AlfalfaGEDB | MsG0480020445.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020445.01

KEGG: K22745
GO: GO:0016491 GO:0055114
PFAM: PF07992

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020445.01.T01	XP_013455748.1	98.305	118	2	0	229	346	1	118	2.26E-73	241

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020445.01.T01	Q54NS9	34.965	143	82	3	213	348	13	151	7.84E-15	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020445.01.T01	A0A072UJ51	98.305	118	2	0	229	346	1	118	1.08e-73	241

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0480020445.01	0.806196	9.251702e-50	4.990769e-47
MsG0080047825.01	MsG0480020445.01	0.855254	7.136356e-62	1.637474e-58
MsG0080047869.01	MsG0480020445.01	0.806216	9.159331e-50	4.943674e-47
MsG0080047912.01	MsG0480020445.01	0.813112	3.018395e-51	1.953554e-48
MsG0080048035.01	MsG0480020445.01	0.860436	2.068561e-63	5.654144e-60
MsG0080048058.01	MsG0480020445.01	0.802712	4.925382e-49	2.429646e-46
MsG0080048177.01	MsG0480020445.01	0.850359	1.786871e-60	3.491043e-57
MsG0080048178.01	MsG0480020445.01	0.854541	1.149489e-61	2.576014e-58
MsG0080048205.01	MsG0480020445.01	0.822131	2.791662e-53	2.316220e-50
MsG0080048207.01	MsG0480020445.01	0.800346	1.504995e-48	6.991459e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020445.01.T01	MTR_4g051622	98.305	118	2	0	229	346	1	118	2.73e-77	241
MsG0480020445.01.T01	MTR_4g051645	72.034	118	33	0	228	345	3	120	8.49e-59	194
MsG0480020445.01.T01	MTR_4g051625	53.498	243	55	5	6	212	46	266	1.61e-55	186
MsG0480020445.01.T01	MTR_4g051625	58.915	129	17	2	120	212	93	221	3.23e-37	137
MsG0480020445.01.T01	MTR_8g085800	48.936	188	41	6	62	212	54	223	1.59e-35	132

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020445.01.T01	AT5G22140	67.544	114	37	232	345	12	125	4.36e-48	166
MsG0480020445.01.T01	AT3G44190	60.526	114	45	232	345	12	125	1.03e-45	160
MsG0480020445.01.T01	AT5G22140	66.197	71	24	275	345	1	71	1.28e-24	102
MsG0480020445.01.T01	AT3G44190	60.563	71	28	275	345	1	71	6.93e-24	100

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Find 57 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGACAAAATCTAGT+TGG	0.473981	4:-41625333	MsG0480020445.01.T01:CDS
AAAGTTGTGATTATAGGAGG+TGG	0.565821	4:-41619832	MsG0480020445.01.T01:CDS
AAATGGTGAGTTAATGATAG+TGG	0.559123	4:-41625721	MsG0480020445.01.T01:intron
AAATGGTGAGTTGATGACAG+TGG	0.761150	4:-41625268	MsG0480020445.01.T01:CDS
AAGAAAGTTGTGATTATAGG+AGG	0.578925	4:-41619835	MsG0480020445.01.T01:CDS
AAGACTATTAACTACATACG+AGG	0.736184	4:-41624087	MsG0480020445.01.T01:CDS
AAGCTACTACTAGTCGAAAA+AGG	0.402492	4:-41625077	MsG0480020445.01.T01:CDS
AAGTCTTTCGGTCCTTGTTT+TGG	0.248727	4:+41618756	None:intergenic
AAGTTATTACTATCCGAAGA+AGG	0.599313	4:-41625812	MsG0480020445.01.T01:CDS
AATACCATCAAAGTAGACCT+GGG	0.679517	4:-41624134	MsG0480020445.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAGAAGCTCAAGAAA+TGG	-	Chr4:41622274-41622293	MsG0480020445.01.T01:intron	30.0%
AAAATGAGAAGTTGCATTAC+AGG	-	Chr4:41624582-41624601	MsG0480020445.01.T01:intron	30.0%
AAACAAGGACAAAATCTAGT+TGG	-	Chr4:41619327-41619346	MsG0480020445.01.T01:intron	30.0%
AAATGGTGAGTTAATGATAG+TGG	-	Chr4:41618939-41618958	MsG0480020445.01.T01:CDS	30.0%
AACAAGGACAAAAATCTAGT+TGG	-	Chr4:41619609-41619628	MsG0480020445.01.T01:intron	30.0%
AACAGTAATGCATAATCATG+AGG	-	Chr4:41621235-41621254	MsG0480020445.01.T01:intron	30.0%
AACTACATACGAGGAAAAAT+TGG	-	Chr4:41620582-41620601	MsG0480020445.01.T01:intron	30.0%
AAGAAAGTTGTGATTATAGG+AGG	-	Chr4:41624825-41624844	MsG0480020445.01.T01:intron	30.0%
AAGACTATTAACTACATACG+AGG	-	Chr4:41620573-41620592	MsG0480020445.01.T01:intron	30.0%
AAGCGAGAAATATCACAAAT+AGG	+	Chr4:41622630-41622649	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	41618723	41625959	41618723	ID=MsG0480020445.01;Name=MsG0480020445.01
Chr4	mRNA	41618723	41625959	41618723	ID=MsG0480020445.01.T01;Parent=MsG0480020445.01;Name=MsG0480020445.01.T01;_AED=0.37;_eAED=0.42;_QI=0\|0.14\|0\|1\|0.42\|0.25\|8\|0\|351
Chr4	exon	41625950	41625959	41625950	ID=MsG0480020445.01.T01:exon:4415;Parent=MsG0480020445.01.T01
Chr4	exon	41625722	41625855	41625722	ID=MsG0480020445.01.T01:exon:4414;Parent=MsG0480020445.01.T01
Chr4	exon	41625208	41625418	41625208	ID=MsG0480020445.01.T01:exon:4413;Parent=MsG0480020445.01.T01
Chr4	exon	41625007	41625111	41625007	ID=MsG0480020445.01.T01:exon:4412;Parent=MsG0480020445.01.T01
Chr4	exon	41624829	41624917	41624829	ID=MsG0480020445.01.T01:exon:4411;Parent=MsG0480020445.01.T01
Chr4	exon	41624073	41624196	41624073	ID=MsG0480020445.01.T01:exon:4410;Parent=MsG0480020445.01.T01
Chr4	exon	41619769	41619877	41619769	ID=MsG0480020445.01.T01:exon:4409;Parent=MsG0480020445.01.T01
Chr4	exon	41618723	41618996	41618723	ID=MsG0480020445.01.T01:exon:4408;Parent=MsG0480020445.01.T01
Chr4	CDS	41625950	41625959	41625950	ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4	CDS	41625722	41625855	41625722	ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4	CDS	41625208	41625418	41625208	ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4	CDS	41625007	41625111	41625007	ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4	CDS	41624829	41624917	41624829	ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4	CDS	41624073	41624196	41624073	ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4	CDS	41619769	41619877	41619769	ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4	CDS	41618723	41618996	41618723	ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01

Gene Sequence

>MsG0480020445.01.T01

ATGAAAGTAACTTGTAAAGGGAAAAAGGCGAAAGTTATTACTATCCGAAGAAGGAAGAACAAGGACAAAAATCTAGCTGGAAGAGAAAACGCAGAAGCTGTTGACGTTGTTGTAGAAGAGCAAAATGGTGAGTTAATGATAGTGTTGATCACGGGATGCAAGTTACGGAGGGAAAAAGGCGAAAGTTTCAACCAGCCGAAAAAAGAAAAACAAGGACAAAATCTAGTTGGAAGAGAAAATCTAGAAGATGTTGAAGTTGATTTAGAAGAGCAAAATGGTGAGTTGATGACAGTGGCGTGGCTTCTCTACTGTGATTGTGAACAAGATATTTTACTGTCTATAAGTGCATATAAGTGGAAAAAGGTGAAAGCTACTACTAGTCGAAAAAGGAAGAACAAGGACAAAAATCTAGTTGGAAGACAAACACCAGAAGATGAAGTTGATTTAGAAGAGCAAAATGATGGAATGGAACATAGTGATTCTAAAGAAGAGGAAGTCAAAGACTCCAAGAAGCACAGAGATTCTAATGTTGAAGCAGCTATCAACCTTCTTTTGACTTGGGAATACTCAACTGCAGAGTGGATCATGGAATACCATCAAAGTAGACCTGGGTTGGAGGTGTTGCAAAATCAATTGAAGACTATTAACTACATACGAGGAAAAATTGGAAGAGATAAAATAAAAATGGTGGAAAAGAAAGTTGTGATTATAGGAGGTGGTGTTGCTGGTGCTGTCCTTGCTAAAACTATACAACATCATGCTAATGTCACTCTTATTGATCCGAAGGAGTATTTTGAGATTCCATGGGCAAGTTTGAGAGCAATGGTGGAGCCATCCTTCGCAGAAAGGACAGTAATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAAGTGCCATCAACATAACTGAATCTGAAGTATTCACTGCTGATGGCCGTGAAATTGCCTATGATTATCTTGTTATCGCAACTGGTCATACGGAATCTATCCCCAAAACAAGGACCGAAAGACTTGACCAATACAAAGGAGTAAGCAATGATACTTAG

Protein sequence

>MsG0480020445.01.T01

MKVTCKGKKAKVITIRRRKNKDKNLAGRENAEAVDVVVEEQNGELMIVLITGCKLRREKGESFNQPKKEKQGQNLVGRENLEDVEVDLEEQNGELMTVAWLLYCDCEQDILLSISAYKWKKVKATTSRKRKNKDKNLVGRQTPEDEVDLEEQNDGMEHSDSKEEEVKDSKKHRDSNVEAAINLLLTWEYSTAEWIMEYHQSRPGLEVLQNQLKTINYIRGKIGRDKIKMVEKKVVIIGGGVAGAVLAKTIQHHANVTLIDPKEYFEIPWASLRAMVEPSFAERTVINHREYFTKGDLVISSAINITESEVFTADGREIAYDYLVIATGHTESIPKTRTERLDQYKGVSNDT*