AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020445.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020445.01.T01 MTR_4g051622 98.305 118 2 0 229 346 1 118 2.73e-77 241
MsG0480020445.01.T01 MTR_4g051645 72.034 118 33 0 228 345 3 120 8.49e-59 194
MsG0480020445.01.T01 MTR_4g051625 53.498 243 55 5 6 212 46 266 1.61e-55 186
MsG0480020445.01.T01 MTR_4g051625 58.915 129 17 2 120 212 93 221 3.23e-37 137
MsG0480020445.01.T01 MTR_8g085800 48.936 188 41 6 62 212 54 223 1.59e-35 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020445.01.T01 AT5G22140 67.544 114 37 0 232 345 12 125 4.36e-48 166
MsG0480020445.01.T01 AT3G44190 60.526 114 45 0 232 345 12 125 1.03e-45 160
MsG0480020445.01.T01 AT5G22140 66.197 71 24 0 275 345 1 71 1.28e-24 102
MsG0480020445.01.T01 AT3G44190 60.563 71 28 0 275 345 1 71 6.93e-24 100

Find 57 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGAATCTCTGTGCTTCT+TGG 0.245269 4:+41624850 None:intergenic
AAGTCTTTCGGTCCTTGTTT+TGG 0.248727 4:+41618756 None:intergenic
ATGGAGATTATAAGGGAAAA+AGG 0.310521 4:-41625103 MsG0480020445.01.T01:intron
TCTAAATCAACTTCATCTTC+TGG 0.321764 4:+41625018 None:intergenic
TGCAGCTTGTAAAGGGAAAA+AGG 0.329067 4:-41625838 MsG0480020445.01.T01:intron
TTCAGATTCAGTTATGTTGA+TGG 0.339851 4:+41618852 None:intergenic
TGCAAGTTACGGAGGGAAAA+AGG 0.350954 4:-41625384 MsG0480020445.01.T01:CDS
TGTCCTTGTTCTTCCTTCTT+CGG 0.356153 4:+41625799 None:intergenic
GTTGATTTAGAAGAGCAAAA+TGG 0.379449 4:-41625006 MsG0480020445.01.T01:intron
GTTGATTTAGAAGAGCAAAA+TGG 0.379449 4:-41625285 MsG0480020445.01.T01:CDS
GAAAAGAAAGTTGTGATTAT+AGG 0.392457 4:-41619838 MsG0480020445.01.T01:CDS
GATTATCTTGTTATCGCAAC+TGG 0.394119 4:-41618796 MsG0480020445.01.T01:CDS
ATTATAGGAGGTGGTGTTGC+TGG 0.401428 4:-41619823 MsG0480020445.01.T01:CDS
CATTGCTTACTCCTTTGTAT+TGG 0.401729 4:+41618731 None:intergenic
AAGCTACTACTAGTCGAAAA+AGG 0.402492 4:-41625077 MsG0480020445.01.T01:CDS
CCAACCCAGGTCTACTTTGA+TGG 0.402517 4:+41624130 None:intergenic
TTTGTATTGGTCAAGTCTTT+CGG 0.415825 4:+41618744 None:intergenic
AATAGAATGCAGCTTGTAAA+GGG 0.444307 4:-41625845 MsG0480020445.01.T01:intron
CTCAATGATGTCAGATGGAA+TGG 0.450935 4:-41624909 MsG0480020445.01.T01:intron
TGCGATAACAAGATAATCAT+AGG 0.455029 4:+41618801 None:intergenic
AAACAAGGACAAAATCTAGT+TGG 0.473981 4:-41625333 MsG0480020445.01.T01:CDS
CATAGAGAATATTTCACAAA+AGG 0.477184 4:-41618895 MsG0480020445.01.T01:CDS
TAATAGAATGCAGCTTGTAA+AGG 0.481658 4:-41625846 MsG0480020445.01.T01:intron
CTCAACTGCAGAGTGGATCA+TGG 0.485065 4:-41624157 MsG0480020445.01.T01:CDS
GAGTAAGCAATGATACTTAG+TGG 0.507430 4:-41618720 None:intergenic
TGATCACGGGATGCAAGTTA+CGG 0.516984 4:-41625395 MsG0480020445.01.T01:CDS
TGGTTGTTTCAGTTGATCAC+GGG 0.517139 4:-41625408 MsG0480020445.01.T01:intron
CCATCAAAGTAGACCTGGGT+TGG 0.520897 4:-41624130 MsG0480020445.01.T01:CDS
TGTTATCGCAACTGGTCATA+CGG 0.523541 4:-41618788 MsG0480020445.01.T01:CDS
GATAATCATAGGCAATTTCA+CGG 0.532473 4:+41618812 None:intergenic
ACTGTCCTTTCTGCGAAGGA+TGG 0.538589 4:+41618925 None:intergenic
TCAAAGTAGACCTGGGTTGG+AGG 0.539427 4:-41624127 MsG0480020445.01.T01:CDS
TTGGTTGTTTCAGTTGATCA+CGG 0.550128 4:-41625409 MsG0480020445.01.T01:intron
GATTACTGTCCTTTCTGCGA+AGG 0.551747 4:+41618921 None:intergenic
AAATGGTGAGTTAATGATAG+TGG 0.559123 4:-41625721 MsG0480020445.01.T01:intron
TGGAGCCATCCTTCGCAGAA+AGG 0.564663 4:-41618930 MsG0480020445.01.T01:CDS
GGCAAGTTTGAGAGCAATGG+TGG 0.564940 4:-41618950 MsG0480020445.01.T01:CDS
AAAGTTGTGATTATAGGAGG+TGG 0.565821 4:-41619832 MsG0480020445.01.T01:CDS
GAATACCATCAAAGTAGACC+TGG 0.568338 4:-41624135 MsG0480020445.01.T01:CDS
ATGGGCAAGTTTGAGAGCAA+TGG 0.572076 4:-41618953 MsG0480020445.01.T01:CDS
AAGAAAGTTGTGATTATAGG+AGG 0.578925 4:-41619835 MsG0480020445.01.T01:CDS
ACATAGTGATTCTAAAGAAG+AGG 0.580245 4:-41624885 MsG0480020445.01.T01:CDS
GTTGTTGTAGAAGAGCAAAA+TGG 0.586388 4:-41625738 MsG0480020445.01.T01:CDS
TCTGAAGTATTCACTGCTGA+TGG 0.587726 4:-41618835 MsG0480020445.01.T01:CDS
ATTGCTCTCAAACTTGCCCA+TGG 0.588281 4:+41618955 None:intergenic
AAGTTATTACTATCCGAAGA+AGG 0.599313 4:-41625812 MsG0480020445.01.T01:CDS
CGGAATCTATCCCCAAAACA+AGG 0.611323 4:-41618768 MsG0480020445.01.T01:CDS
CACGGGATGCAAGTTACGGA+GGG 0.615938 4:-41625391 MsG0480020445.01.T01:CDS
TGATGGCACTTGATATAACA+AGG 0.655923 4:+41618869 None:intergenic
TCACGGGATGCAAGTTACGG+AGG 0.659404 4:-41625392 MsG0480020445.01.T01:CDS
GAAAGACTTGACCAATACAA+AGG 0.662488 4:-41618742 MsG0480020445.01.T01:CDS
AATACCATCAAAGTAGACCT+GGG 0.679517 4:-41624134 MsG0480020445.01.T01:CDS
GGGAATACTCAACTGCAGAG+TGG 0.680390 4:-41624164 MsG0480020445.01.T01:CDS
TATCCGAAGAAGGAAGAACA+AGG 0.684569 4:-41625802 MsG0480020445.01.T01:CDS
GTGAGTTGATGACAGTGGCG+TGG 0.704753 4:-41625263 MsG0480020445.01.T01:CDS
AAGACTATTAACTACATACG+AGG 0.736184 4:-41624087 MsG0480020445.01.T01:CDS
AAATGGTGAGTTGATGACAG+TGG 0.761150 4:-41625268 MsG0480020445.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATTGAAATTTCTAT+TGG + Chr4:41623675-41623694 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - Chr4:41624023-41624042 MsG0480020445.01.T01:intron 10.0%
!! CATAAAATCATATAATTATA+AGG + Chr4:41622779-41622798 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - Chr4:41624022-41624041 MsG0480020445.01.T01:intron 10.0%
!! TCATGAATATTATTATATTT+GGG - Chr4:41623805-41623824 MsG0480020445.01.T01:intron 10.0%
!! TTACAAAGATAAAATAAAAA+TGG - Chr4:41624797-41624816 MsG0480020445.01.T01:intron 10.0%
!! TTCATGAATATTATTATATT+TGG - Chr4:41623804-41623823 MsG0480020445.01.T01:intron 10.0%
!!! TAATTTTAGTTAAAAATAAG+TGG + Chr4:41624426-41624445 None:intergenic 10.0%
!!! TCTATAAAATAAAAGTATAA+TGG + Chr4:41623766-41623785 None:intergenic 10.0%
!!! TTTTAGTTTATGAAATATTA+GGG - Chr4:41622539-41622558 MsG0480020445.01.T01:intron 10.0%
!! AAAATCATAACATGTTAATT+AGG - Chr4:41622445-41622464 MsG0480020445.01.T01:intron 15.0%
!! AAAGTAGAATATATTGTATT+GGG - Chr4:41624047-41624066 MsG0480020445.01.T01:intron 15.0%
!! AAATCATAACATGTTAATTA+GGG - Chr4:41622446-41622465 MsG0480020445.01.T01:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG - Chr4:41624086-41624105 MsG0480020445.01.T01:CDS 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - Chr4:41624024-41624043 MsG0480020445.01.T01:intron 15.0%
!! ATTACTAGGATATAAAAATA+TGG + Chr4:41622326-41622345 None:intergenic 15.0%
!! ATTCTCTATAATAACAATAA+TGG + Chr4:41625335-41625354 None:intergenic 15.0%
!! GGTAATTAAATAATATCAAT+TGG - Chr4:41625026-41625045 MsG0480020445.01.T01:CDS 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - Chr4:41624085-41624104 MsG0480020445.01.T01:CDS 15.0%
!! TGTATATTTATTGTTATACA+TGG - Chr4:41620409-41620428 MsG0480020445.01.T01:intron 15.0%
!!! AGAAATATTTTTGACAAAAT+TGG + Chr4:41623112-41623131 None:intergenic 15.0%
!!! CTTTTAGTTTATGAAATATT+AGG - Chr4:41622538-41622557 MsG0480020445.01.T01:intron 15.0%
!!! GTTGGAAAATATTTTATTTA+GGG - Chr4:41620785-41620804 MsG0480020445.01.T01:intron 15.0%
!!! TCTTATAGTATTACTTTTTT+TGG + Chr4:41624547-41624566 None:intergenic 15.0%
!!! TGTTGGAAAATATTTTATTT+AGG - Chr4:41620784-41620803 MsG0480020445.01.T01:intron 15.0%
!! AAAAATCTAGATTGAAGATA+AGG - Chr4:41623302-41623321 MsG0480020445.01.T01:intron 20.0%
!! AAAACTTAGTAGTTTGAATT+TGG + Chr4:41624654-41624673 None:intergenic 20.0%
!! AAAGAATAATGGTAACAATA+TGG + Chr4:41620340-41620359 None:intergenic 20.0%
!! AAAGTGTATTGAAATTGAAA+TGG - Chr4:41624116-41624135 MsG0480020445.01.T01:CDS 20.0%
!! AATCATAACATGTTAATTAG+GGG - Chr4:41622447-41622466 MsG0480020445.01.T01:intron 20.0%
!! AATGAATCCTTTATACTATT+AGG + Chr4:41622604-41622623 None:intergenic 20.0%
!! AGTTGTCAAAATTAATTCAA+GGG - Chr4:41624234-41624253 MsG0480020445.01.T01:intron 20.0%
!! ATCAAAATAAGGAACAAATA+TGG + Chr4:41622042-41622061 None:intergenic 20.0%
!! ATCATAGAAACAAAGATATT+AGG + Chr4:41622654-41622673 None:intergenic 20.0%
!! ATGCATAGTGATTATTTATT+AGG - Chr4:41625221-41625240 MsG0480020445.01.T01:CDS 20.0%
!! ATTTGCGAGAAAAAAAAAAA+AGG + Chr4:41620076-41620095 None:intergenic 20.0%
!! CAAAGATAAAATAAAAATGG+TGG - Chr4:41624800-41624819 MsG0480020445.01.T01:intron 20.0%
!! CCAAAAAGAAAATAAAGAAT+TGG - Chr4:41622230-41622249 MsG0480020445.01.T01:intron 20.0%
!! GAAAGTAGAATATATTGTAT+TGG - Chr4:41624046-41624065 MsG0480020445.01.T01:intron 20.0%
!! TCAAAATAAGGAACAAATAT+GGG + Chr4:41622041-41622060 None:intergenic 20.0%
!! TCATAGAAACAAAGATATTA+GGG + Chr4:41622653-41622672 None:intergenic 20.0%
!!! AATTATATAGCTTTTGACTT+GGG - Chr4:41620476-41620495 MsG0480020445.01.T01:intron 20.0%
!!! AATTTTAATTAATGGCAGAA+AGG + Chr4:41622684-41622703 None:intergenic 20.0%
!!! ATTTCCATGCAATTATTTTT+TGG - Chr4:41622060-41622079 MsG0480020445.01.T01:intron 20.0%
!!! ATTTGATGATTATTACAAGT+AGG - Chr4:41623466-41623485 MsG0480020445.01.T01:intron 20.0%
!!! ATTTTAATTAATGGCAGAAA+GGG + Chr4:41622683-41622702 None:intergenic 20.0%
!!! CAAAAATATTTCTAGATGTA+AGG - Chr4:41623119-41623138 MsG0480020445.01.T01:intron 20.0%
!!! CCAATTCTTTATTTTCTTTT+TGG + Chr4:41622233-41622252 None:intergenic 20.0%
!!! CTTCAATCTAGATTTTTTTA+GGG + Chr4:41623299-41623318 None:intergenic 20.0%
!!! GAATTTTCTCTGAAATAAAT+CGG - Chr4:41619514-41619533 MsG0480020445.01.T01:intron 20.0%
!!! TAATTATATAGCTTTTGACT+TGG - Chr4:41620475-41620494 MsG0480020445.01.T01:intron 20.0%
!!! TATGATTTTGATGAGTAATA+AGG - Chr4:41621192-41621211 MsG0480020445.01.T01:intron 20.0%
!!! TATTTTTGACAAAATTGGAA+TGG + Chr4:41623107-41623126 None:intergenic 20.0%
!!! TCTTCAATCTAGATTTTTTT+AGG + Chr4:41623300-41623319 None:intergenic 20.0%
!!! TTCAATCTAGATTTTTTTAG+GGG + Chr4:41623298-41623317 None:intergenic 20.0%
!!! TTCTCATTTTCAACATTTTA+AGG + Chr4:41624572-41624591 None:intergenic 20.0%
! AAACAGAGAAAAATTCTATG+AGG + Chr4:41619911-41619930 None:intergenic 25.0%
! AACCTTATACAAATATACCT+TGG + Chr4:41620895-41620914 None:intergenic 25.0%
! ACAAAGTTTAGGAATCATAA+AGG + Chr4:41623077-41623096 None:intergenic 25.0%
! ACCTCTAAACATTTAGATTA+TGG - Chr4:41625500-41625519 MsG0480020445.01.T01:intron 25.0%
! AGAAGAAAAAAAAAAGAGCA+TGG + Chr4:41624955-41624974 None:intergenic 25.0%
! AGTATATTGTTCAAATAAGC+AGG + Chr4:41623707-41623726 None:intergenic 25.0%
! ATAAAAGGATAAATCCTTAC+CGG + Chr4:41623368-41623387 None:intergenic 25.0%
! ATATTTCCTGTGTACAAAAA+AGG + Chr4:41623391-41623410 None:intergenic 25.0%
! ATCAGATTATTTGTTCGATT+GGG + Chr4:41624472-41624491 None:intergenic 25.0%
! ATCATAACATGTTAATTAGG+GGG - Chr4:41622448-41622467 MsG0480020445.01.T01:intron 25.0%
! ATCCAAGGTATATTTGTATA+AGG - Chr4:41620890-41620909 MsG0480020445.01.T01:intron 25.0%
! ATGGTAAATGAACAAAGTTT+AGG + Chr4:41623088-41623107 None:intergenic 25.0%
! ATTGCATGGAAATCAAAATA+AGG + Chr4:41622053-41622072 None:intergenic 25.0%
! CAATTGCAGCTAAATTATAA+AGG + Chr4:41625536-41625555 None:intergenic 25.0%
! CATAGAGAATATTTCACAAA+AGG - Chr4:41625765-41625784 MsG0480020445.01.T01:CDS 25.0%
! CCTCTAAACATTTAGATTAT+GGG - Chr4:41625501-41625520 MsG0480020445.01.T01:intron 25.0%
! GAAAAATTCTATGAGGAAAA+TGG + Chr4:41619904-41619923 None:intergenic 25.0%
! GAAAAGAAAGTTGTGATTAT+AGG - Chr4:41624822-41624841 MsG0480020445.01.T01:intron 25.0%
! GAGTTGTCAAAATTAATTCA+AGG - Chr4:41624233-41624252 MsG0480020445.01.T01:intron 25.0%
! TACATTGGAACAATTTACAA+TGG - Chr4:41620200-41620219 MsG0480020445.01.T01:intron 25.0%
! TAGTAGCAACATCATTTATA+AGG + Chr4:41622983-41623002 None:intergenic 25.0%
! TATCCTAAACCAAACAAATT+TGG - Chr4:41623413-41623432 MsG0480020445.01.T01:intron 25.0%
! TATTGTGAATGATAATTTCG+TGG + Chr4:41618993-41619012 None:intergenic 25.0%
! TCGCTGTATAATAAAATTCA+TGG + Chr4:41620754-41620773 None:intergenic 25.0%
! TCTCGCAAATACTTTATATT+TGG - Chr4:41620086-41620105 MsG0480020445.01.T01:intron 25.0%
! TGAAACAACCAATTCATATA+GGG + Chr4:41619243-41619262 None:intergenic 25.0%
! TGTGTACAAAAAAGGATAAA+AGG + Chr4:41623383-41623402 None:intergenic 25.0%
! TTGACCAAAAAATAATTGCA+TGG + Chr4:41622067-41622086 None:intergenic 25.0%
! TTGTGTCAAATTATATTGAG+TGG - Chr4:41625005-41625024 MsG0480020445.01.T01:intron 25.0%
!! AGAATTTTTCTCTGTTTTGT+AGG - Chr4:41619914-41619933 MsG0480020445.01.T01:intron 25.0%
!! ATTTTCTCTGTATTTTCTCT+TGG - Chr4:41621588-41621607 MsG0480020445.01.T01:intron 25.0%
!! CTTTTGTGAAATATTCTCTA+TGG + Chr4:41625767-41625786 None:intergenic 25.0%
!! TGATTTAGTCCAAATTTGTT+TGG + Chr4:41623425-41623444 None:intergenic 25.0%
!! TTCGTGACATTTAGTATTTT+CGG - Chr4:41619133-41619152 MsG0480020445.01.T01:intron 25.0%
!!! AAAGTCATTTTTCATACATC+TGG - Chr4:41620854-41620873 MsG0480020445.01.T01:intron 25.0%
!!! AATTATTTTTTGGTCAATGC+AGG - Chr4:41622070-41622089 MsG0480020445.01.T01:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - Chr4:41624152-41624171 MsG0480020445.01.T01:CDS 25.0%
!!! GTATTACTTTTTTTGGTACA+AGG + Chr4:41624540-41624559 None:intergenic 25.0%
!!! GTGCGTAGAATTTTAATTAA+TGG + Chr4:41622692-41622711 None:intergenic 25.0%
!!! TCATCAGATTTTGACTAATT+TGG + Chr4:41623339-41623358 None:intergenic 25.0%
!!! TGACTTTACAAGTTTTTTCA+AGG + Chr4:41620841-41620860 None:intergenic 25.0%
!!! TGTCCTTGTTTTTCTTTTTT+CGG + Chr4:41619318-41619337 None:intergenic 25.0%
!!! TTTTATCCTTTTTTGTACAC+AGG - Chr4:41623382-41623401 MsG0480020445.01.T01:intron 25.0%
AAAAAGAGAAGCTCAAGAAA+TGG - Chr4:41622274-41622293 MsG0480020445.01.T01:intron 30.0%
AAAATGAGAAGTTGCATTAC+AGG - Chr4:41624582-41624601 MsG0480020445.01.T01:intron 30.0%
AAACAAGGACAAAATCTAGT+TGG - Chr4:41619327-41619346 MsG0480020445.01.T01:intron 30.0%
AAATGGTGAGTTAATGATAG+TGG - Chr4:41618939-41618958 MsG0480020445.01.T01:CDS 30.0%
AACAAGGACAAAAATCTAGT+TGG - Chr4:41619609-41619628 MsG0480020445.01.T01:intron 30.0%
AACAGTAATGCATAATCATG+AGG - Chr4:41621235-41621254 MsG0480020445.01.T01:intron 30.0%
AACTACATACGAGGAAAAAT+TGG - Chr4:41620582-41620601 MsG0480020445.01.T01:intron 30.0%
AAGAAAGTTGTGATTATAGG+AGG - Chr4:41624825-41624844 MsG0480020445.01.T01:intron 30.0%
AAGACTATTAACTACATACG+AGG - Chr4:41620573-41620592 MsG0480020445.01.T01:intron 30.0%
AAGCGAGAAATATCACAAAT+AGG + Chr4:41622630-41622649 None:intergenic 30.0%
AAGTTATTACTATCCGAAGA+AGG - Chr4:41618848-41618867 MsG0480020445.01.T01:CDS 30.0%
AATAGAATGCAGCTTGTAAA+GGG - Chr4:41618815-41618834 MsG0480020445.01.T01:CDS 30.0%
ACAGCGAATTAAATTGATGT+TGG - Chr4:41620767-41620786 MsG0480020445.01.T01:intron 30.0%
ACATTCCACAATGATAGATA+AGG - Chr4:41621405-41621424 MsG0480020445.01.T01:intron 30.0%
ACCTCACAATATGTAACTAT+GGG + Chr4:41620168-41620187 None:intergenic 30.0%
ACTAATAAGTTGTTGAACAC+AGG - Chr4:41625664-41625683 MsG0480020445.01.T01:intron 30.0%
AGAAACAGCTAGAAATTACT+AGG + Chr4:41622340-41622359 None:intergenic 30.0%
AGCGAGAAATATCACAAATA+GGG + Chr4:41622629-41622648 None:intergenic 30.0%
AGGGTTATCTGACTATAATT+AGG + Chr4:41620707-41620726 None:intergenic 30.0%
ATCCTGAAATGGAGATTATA+AGG - Chr4:41619549-41619568 MsG0480020445.01.T01:intron 30.0%
ATGGAGATTATAAGGGAAAA+AGG - Chr4:41619557-41619576 MsG0480020445.01.T01:intron 30.0%
ATTATTATCCCCCTGATAAA+AGG + Chr4:41620727-41620746 None:intergenic 30.0%
CAAAATCTGATGAAAGTAAC+CGG - Chr4:41623346-41623365 MsG0480020445.01.T01:intron 30.0%
CAAATAGAAGAAGAACGTTT+CGG + Chr4:41621379-41621398 None:intergenic 30.0%
CAATCGAACAAATAATCTGA+TGG - Chr4:41624471-41624490 MsG0480020445.01.T01:intron 30.0%
CATCAGATTATTTGTTCGAT+TGG + Chr4:41624473-41624492 None:intergenic 30.0%
CATTACTGTTCTGTAATCAA+GGG + Chr4:41621225-41621244 None:intergenic 30.0%
CATTCACAATATCTTGAAGT+CGG - Chr4:41619002-41619021 MsG0480020445.01.T01:intron 30.0%
CCCATAATCTAAATGTTTAG+AGG + Chr4:41625504-41625523 None:intergenic 30.0%
CTGAAACAACCAATTCATAT+AGG + Chr4:41619244-41619263 None:intergenic 30.0%
GAACATTTCCCTATATGAAT+TGG - Chr4:41619232-41619251 MsG0480020445.01.T01:intron 30.0%
GAGTGAATTCATAGATAACT+TGG - Chr4:41621655-41621674 MsG0480020445.01.T01:intron 30.0%
GATAATCATAGGCAATTTCA+CGG + Chr4:41625851-41625870 None:intergenic 30.0%
GCAGATAAGAAGAAAAAGAA+AGG - Chr4:41619946-41619965 MsG0480020445.01.T01:intron 30.0%
GCTATACATACATACAGTAA+TGG - Chr4:41620227-41620246 MsG0480020445.01.T01:intron 30.0%
GGGTTAAAAGAAAAGTTGAA+TGG - Chr4:41625130-41625149 MsG0480020445.01.T01:intron 30.0%
GTGAGATGAGAGATTATAAA+GGG + Chr4:41621947-41621966 None:intergenic 30.0%
TAAATTTAAACCAACGACGT+TGG - Chr4:41622407-41622426 MsG0480020445.01.T01:intron 30.0%
TAATAGAATGCAGCTTGTAA+AGG - Chr4:41618814-41618833 MsG0480020445.01.T01:CDS 30.0%
TAGAAAATGGTCAGATATTC+CGG - Chr4:41624165-41624184 MsG0480020445.01.T01:CDS 30.0%
TATTAAAATGATATGCACGC+AGG + Chr4:41621116-41621135 None:intergenic 30.0%
TCAAGCACATAGTTTATAGT+AGG - Chr4:41623442-41623461 MsG0480020445.01.T01:intron 30.0%
TCATAACATGTTAATTAGGG+GGG - Chr4:41622449-41622468 MsG0480020445.01.T01:intron 30.0%
TCATAGCTGTAAATTGAACA+TGG + Chr4:41622013-41622032 None:intergenic 30.0%
TCATTGCATGTATCATCAAA+AGG + Chr4:41624677-41624696 None:intergenic 30.0%
TCCTGAAATGGAGATTATAA+GGG - Chr4:41619550-41619569 MsG0480020445.01.T01:intron 30.0%
TCTAAATCAACTTCATCTTC+TGG + Chr4:41619645-41619664 None:intergenic 30.0%
TCTTAAAGCAAAACAGAAGT+CGG - Chr4:41620630-41620649 MsG0480020445.01.T01:intron 30.0%
TGAGAAAGTTAGAAGAAACA+AGG + Chr4:41621285-41621304 None:intergenic 30.0%
TGCGATAACAAGATAATCAT+AGG + Chr4:41625862-41625881 None:intergenic 30.0%
TGCTAGACCTAATAGTATAA+AGG - Chr4:41622594-41622613 MsG0480020445.01.T01:intron 30.0%
TGGTAATCATGTATCAAGAT+TGG + Chr4:41621433-41621452 None:intergenic 30.0%
TGTGAGATGAGAGATTATAA+AGG + Chr4:41621948-41621967 None:intergenic 30.0%
TTATTATCCCCCTGATAAAA+GGG + Chr4:41620726-41620745 None:intergenic 30.0%
TTCAGATTCAGTTATGTTGA+TGG + Chr4:41625811-41625830 None:intergenic 30.0%
TTTGAATTTCTCAATCGAAG+AGG - Chr4:41623918-41623937 MsG0480020445.01.T01:intron 30.0%
! AAATAAATCGGTTGTTTCAG+TGG - Chr4:41619526-41619545 MsG0480020445.01.T01:intron 30.0%
! ACATAGTGATTCTAAAGAAG+AGG - Chr4:41619775-41619794 MsG0480020445.01.T01:CDS 30.0%
! AGTCCAAATTTGTTTGGTTT+AGG + Chr4:41623419-41623438 None:intergenic 30.0%
! ATCTGTCATTTCAGTTACAA+TGG + Chr4:41621716-41621735 None:intergenic 30.0%
! GATTTCTTTAGAGACATCAA+TGG + Chr4:41621565-41621584 None:intergenic 30.0%
! GTTGATTTAGAAGAGCAAAA+TGG - Chr4:41619375-41619394 MsG0480020445.01.T01:intron 30.0%
! TTCTTTTCACGTCTTTTCTA+TGG - Chr4:41623170-41623189 MsG0480020445.01.T01:intron 30.0%
! TTGAAATGGCTCAGTTATTT+TGG - Chr4:41624130-41624149 MsG0480020445.01.T01:CDS 30.0%
! TTTATTATTGGTGATTCACC+AGG - Chr4:41623842-41623861 MsG0480020445.01.T01:intron 30.0%
! TTTGTATTGGTCAAGTCTTT+CGG + Chr4:41625919-41625938 None:intergenic 30.0%
! TTTTTCTCTGTTTTGTAGGT+AGG - Chr4:41619918-41619937 MsG0480020445.01.T01:intron 30.0%
!! AGTTCTAAAATCACCAGAAA+AGG - Chr4:41619970-41619989 MsG0480020445.01.T01:intron 30.0%
!! ATGACTTGGGATTTTTCATT+GGG + Chr4:41623227-41623246 None:intergenic 30.0%
!! GTTGAATGGTAATTTTGACA+TGG - Chr4:41625144-41625163 MsG0480020445.01.T01:intron 30.0%
!! TATGACTTGGGATTTTTCAT+TGG + Chr4:41623228-41623247 None:intergenic 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG - Chr4:41624131-41624150 MsG0480020445.01.T01:CDS 30.0%
!! TTAAATTTGGTGTTAGGATG+TGG - Chr4:41621001-41621020 MsG0480020445.01.T01:intron 30.0%
!!! GATGTTGTATAGTTTTAGCA+AGG + Chr4:41624869-41624888 None:intergenic 30.0%
AAAGGCAGAACAAAATCATC+AGG - Chr4:41619988-41620007 MsG0480020445.01.T01:intron 35.0%
AAAGTAAGTAAGGGGGAAAA+AGG - Chr4:41618726-41618745 MsG0480020445.01.T01:CDS 35.0%
AAAGTTGTGATTATAGGAGG+TGG - Chr4:41624828-41624847 MsG0480020445.01.T01:intron 35.0%
AACAAGGACAAAAATCTAGC+TGG - Chr4:41618874-41618893 MsG0480020445.01.T01:CDS 35.0%
AAGAAAAGAACCATGAACCT+TGG + Chr4:41623012-41623031 None:intergenic 35.0%
AAGCTACTACTAGTCGAAAA+AGG - Chr4:41619583-41619602 MsG0480020445.01.T01:intron 35.0%
AAGTTGACTATAGTTGCCAT+TGG - Chr4:41624610-41624629 MsG0480020445.01.T01:intron 35.0%
AATACCATCAAAGTAGACCT+GGG - Chr4:41620526-41620545 MsG0480020445.01.T01:intron 35.0%
ACAAATATGCACAAAGCACA+CGG + Chr4:41620392-41620411 None:intergenic 35.0%
ACCTTTCTCTTCCTTAAGTT+GGG - Chr4:41621850-41621869 MsG0480020445.01.T01:intron 35.0%
AGTAAAGACCGACTAAAGAT+TGG + Chr4:41625069-41625088 None:intergenic 35.0%
ATAAACATGACCAAAGCCAA+TGG + Chr4:41624629-41624648 None:intergenic 35.0%
ATAAGTTGTTGAACACAGGA+AGG - Chr4:41625668-41625687 MsG0480020445.01.T01:intron 35.0%
ATACAGATGAGAGCCAATAA+TGG - Chr4:41621455-41621474 MsG0480020445.01.T01:intron 35.0%
ATACGAGGAAAAATTGGAAG+AGG - Chr4:41620588-41620607 MsG0480020445.01.T01:intron 35.0%
ATGCCAAACCAATTGCATTA+AGG - Chr4:41619076-41619095 MsG0480020445.01.T01:intron 35.0%
ATGCCTTAATGCAATTGGTT+TGG + Chr4:41619082-41619101 None:intergenic 35.0%
ATTAGAATCTCTGTGCTTCT+TGG + Chr4:41619813-41619832 None:intergenic 35.0%
CACCTCACAATATGTAACTA+TGG + Chr4:41620169-41620188 None:intergenic 35.0%
CAGCCGAAAAAAGAAAAACA+AGG - Chr4:41619312-41619331 MsG0480020445.01.T01:intron 35.0%
CATAGTTACATATTGTGAGG+TGG - Chr4:41620167-41620186 MsG0480020445.01.T01:intron 35.0%
CATCTATATTTGCACCAACA+TGG - Chr4:41622482-41622501 MsG0480020445.01.T01:intron 35.0%
CATGTTGGTGCAAATATAGA+TGG + Chr4:41622484-41622503 None:intergenic 35.0%
CATTGCTTACTCCTTTGTAT+TGG + Chr4:41625932-41625951 None:intergenic 35.0%
CATTTCAGTTACAATGGTCA+AGG + Chr4:41621710-41621729 None:intergenic 35.0%
CGAGAAGAAGAAGAAAAGTA+AGG - Chr4:41618761-41618780 MsG0480020445.01.T01:CDS 35.0%
CGAGTTAAATTCTGCACATA+AGG + Chr4:41621147-41621166 None:intergenic 35.0%
CTTGTAATAACTGCACTTTC+TGG - Chr4:41619851-41619870 MsG0480020445.01.T01:CDS 35.0%
GAAAGACTTGACCAATACAA+AGG - Chr4:41625918-41625937 MsG0480020445.01.T01:intron 35.0%
GAAGAAGAAGAAAAGTAAGG+TGG - Chr4:41618764-41618783 MsG0480020445.01.T01:CDS 35.0%
GAGAATCGTGTTGTCAAATA+CGG - Chr4:41625349-41625368 MsG0480020445.01.T01:CDS 35.0%
GCATTACTGTTCTGTAATCA+AGG + Chr4:41621226-41621245 None:intergenic 35.0%
GGTAGTACAAGATACTAGTT+AGG + Chr4:41623960-41623979 None:intergenic 35.0%
GTAACAATATGGTCACTCTT+AGG + Chr4:41620329-41620348 None:intergenic 35.0%
GTCGTAAAATGATGACCAAT+GGG - Chr4:41625454-41625473 MsG0480020445.01.T01:intron 35.0%
GTTGTTGTAGAAGAGCAAAA+TGG - Chr4:41618922-41618941 MsG0480020445.01.T01:CDS 35.0%
TAGAAGAAACAAGGCATGTT+GGG + Chr4:41621276-41621295 None:intergenic 35.0%
TAGTCGAAAAAGGAAGAACA+AGG - Chr4:41619593-41619612 MsG0480020445.01.T01:intron 35.0%
TATGGCAAAGTGAGTTAGTT+TGG + Chr4:41621973-41621992 None:intergenic 35.0%
TCCCATAGTTACATATTGTG+AGG - Chr4:41620164-41620183 MsG0480020445.01.T01:intron 35.0%
TCCCTTATAATCTCCATTTC+AGG + Chr4:41619554-41619573 None:intergenic 35.0%
TCGAACAAATAATCTGATGG+AGG - Chr4:41624474-41624493 MsG0480020445.01.T01:intron 35.0%
TCTGACATCATTGAGGAAAA+AGG + Chr4:41619746-41619765 None:intergenic 35.0%
TGAAATGACAACCCAACTTA+AGG + Chr4:41621864-41621883 None:intergenic 35.0%
TGATGGCACTTGATATAACA+AGG + Chr4:41625794-41625813 None:intergenic 35.0%
TGCTGTCTTAAACTAGTACA+TGG - Chr4:41622821-41622840 MsG0480020445.01.T01:intron 35.0%
TGGAACCTTATCTATCATTG+TGG + Chr4:41621413-41621432 None:intergenic 35.0%
TGGTGAGAGTTAGAAAAGTT+AGG + Chr4:41625257-41625276 None:intergenic 35.0%
TGTCGTAAAATGATGACCAA+TGG - Chr4:41625453-41625472 MsG0480020445.01.T01:intron 35.0%
TTAGAAGAAACAAGGCATGT+TGG + Chr4:41621277-41621296 None:intergenic 35.0%
TTTATGTTTGATCGCAGTCT+TGG - Chr4:41625591-41625610 MsG0480020445.01.T01:intron 35.0%
! ACAGAGCTTTTCTGTTTATG+GGG - Chr4:41620963-41620982 MsG0480020445.01.T01:intron 35.0%
! AGGTTCATGGTTCTTTTCTT+AGG - Chr4:41623012-41623031 MsG0480020445.01.T01:intron 35.0%
! AGTCAGATAACCCTTTTATC+AGG - Chr4:41620713-41620732 MsG0480020445.01.T01:intron 35.0%
! ATGGCAAAGTGAGTTAGTTT+GGG + Chr4:41621972-41621991 None:intergenic 35.0%
! CAGAAAGTGCAGTTATTACA+AGG + Chr4:41619853-41619872 None:intergenic 35.0%
! CCTCAATTTAAAACACCATC+AGG + Chr4:41625397-41625416 None:intergenic 35.0%
! GACAGAGCTTTTCTGTTTAT+GGG - Chr4:41620962-41620981 MsG0480020445.01.T01:intron 35.0%
! GATTATCTTGTTATCGCAAC+TGG - Chr4:41625864-41625883 MsG0480020445.01.T01:intron 35.0%
! GCTTGTGTGTTTTATGACTT+GGG + Chr4:41623240-41623259 None:intergenic 35.0%
! GGTGGTTTTTACATGTACAT+TGG - Chr4:41620185-41620204 MsG0480020445.01.T01:intron 35.0%
! GGTTCATGGTTCTTTTCTTA+GGG - Chr4:41623013-41623032 MsG0480020445.01.T01:intron 35.0%
! GTCAGATAACCCTTTTATCA+GGG - Chr4:41620714-41620733 MsG0480020445.01.T01:intron 35.0%
! GTTCATGGTTCTTTTCTTAG+GGG - Chr4:41623014-41623033 MsG0480020445.01.T01:intron 35.0%
! TAGGGGAGCAGATTTTATTA+TGG - Chr4:41623031-41623050 MsG0480020445.01.T01:intron 35.0%
! TCAGATAACCCTTTTATCAG+GGG - Chr4:41620715-41620734 MsG0480020445.01.T01:intron 35.0%
! TCGTTTTATCTGAGTCAGTT+TGG - Chr4:41623986-41624005 MsG0480020445.01.T01:intron 35.0%
! TGACAGAGCTTTTCTGTTTA+TGG - Chr4:41620961-41620980 MsG0480020445.01.T01:intron 35.0%
! TGATTTTCTGTATGCATCGT+TGG - Chr4:41624203-41624222 MsG0480020445.01.T01:intron 35.0%
! TGATTTTGTTCTGCCTTTTC+TGG + Chr4:41619986-41620005 None:intergenic 35.0%
! TGCTTGTGTGTTTTATGACT+TGG + Chr4:41623241-41623260 None:intergenic 35.0%
! TGGTAGTTGGTGCTTAAATT+TGG - Chr4:41620988-41621007 MsG0480020445.01.T01:intron 35.0%
! TTGGTTGTTTCAGTTGATCA+CGG - Chr4:41619251-41619270 MsG0480020445.01.T01:intron 35.0%
! TTTTCCTCAATGATGTCAGA+TGG - Chr4:41619746-41619765 MsG0480020445.01.T01:intron 35.0%
!! AGAAAGGTGTTAGAACTTTG+AGG + Chr4:41621838-41621857 None:intergenic 35.0%
!! AGCTGCTCTAGAGAATAAAT+TGG - Chr4:41622207-41622226 MsG0480020445.01.T01:intron 35.0%
!! CCTGATGGTGTTTTAAATTG+AGG - Chr4:41625394-41625413 MsG0480020445.01.T01:CDS 35.0%
!! GAAAGGTGTTAGAACTTTGA+GGG + Chr4:41621837-41621856 None:intergenic 35.0%
!! GACGTTGGTGGTTTAAATAA+AGG - Chr4:41622422-41622441 MsG0480020445.01.T01:intron 35.0%
!! TGGTGCTTAAATTTGGTGTT+AGG - Chr4:41620995-41621014 MsG0480020445.01.T01:intron 35.0%
!! TTGTATACCGACTAGTTCTA+TGG - Chr4:41620815-41620834 MsG0480020445.01.T01:intron 35.0%
!! TTTTGACTCGTGAACATTGA+AGG + Chr4:41621501-41621520 None:intergenic 35.0%
!!! AGGAGTATTTTGAGATTCCA+TGG - Chr4:41625688-41625707 MsG0480020445.01.T01:intron 35.0%
!!! CTTGTTTTTCTTTTTTCGGC+TGG + Chr4:41619314-41619333 None:intergenic 35.0%
!!! GAGCTTCTCTTTTTTGAAAG+CGG + Chr4:41622268-41622287 None:intergenic 35.0%
!!! GGAGTATTTTGAGATTCCAT+GGG - Chr4:41625689-41625708 MsG0480020445.01.T01:intron 35.0%
!!! GGTTTTAAAATCGCAATCCT+GGG - Chr4:41625302-41625321 MsG0480020445.01.T01:CDS 35.0%
AAATGCTGATGTTGAGACAG+TGG - Chr4:41618790-41618809 MsG0480020445.01.T01:CDS 40.0%
AAGACCGACTAAAGATTGGT+TGG + Chr4:41625065-41625084 None:intergenic 40.0%
AAGAGCAAAATGGTGAGTTG+AGG - Chr4:41619385-41619404 MsG0480020445.01.T01:intron 40.0%
AAGGAGGAATAGGTCTCTAT+TGG + Chr4:41621788-41621807 None:intergenic 40.0%
AATGGTCAGATATTCCGGAA+CGG - Chr4:41624170-41624189 MsG0480020445.01.T01:CDS 40.0%
ACCCAACTTAAGGAAGAGAA+AGG + Chr4:41621854-41621873 None:intergenic 40.0%
AGGAGGAATAGGTCTCTATT+GGG + Chr4:41621787-41621806 None:intergenic 40.0%
AGGGGATTGAATCTAGATGT+GGG + Chr4:41623280-41623299 None:intergenic 40.0%
AGTCCCAACCAATCTTTAGT+CGG - Chr4:41625058-41625077 MsG0480020445.01.T01:CDS 40.0%
AGTCGTGACCGCAATTTAAA+CGG - Chr4:41625557-41625576 MsG0480020445.01.T01:intron 40.0%
ATCACAGAACTCACAAAAGC+CGG + Chr4:41619105-41619124 None:intergenic 40.0%
ATTGGGAAAAGACTGTTCCA+AGG + Chr4:41623210-41623229 None:intergenic 40.0%
ATTTAAACCAACGACGTTGG+TGG - Chr4:41622410-41622429 MsG0480020445.01.T01:intron 40.0%
ATTTAAACCACCAACGTCGT+TGG + Chr4:41622420-41622439 None:intergenic 40.0%
CAAAACGACAGATAGCTGAA+TGG - Chr4:41621516-41621535 MsG0480020445.01.T01:intron 40.0%
CACCACAATCCAATAGTCAA+CGG + Chr4:41620366-41620385 None:intergenic 40.0%
CACCTTTCTCTTCCTTAAGT+TGG - Chr4:41621849-41621868 MsG0480020445.01.T01:intron 40.0%
CAGCTTTCAGCTTATGATAG+AGG - Chr4:41623627-41623646 MsG0480020445.01.T01:intron 40.0%
CAGTTTCATTGTGATCCTGA+TGG - Chr4:41625379-41625398 MsG0480020445.01.T01:CDS 40.0%
CATTCCATCTGACATCATTG+AGG + Chr4:41619753-41619772 None:intergenic 40.0%
CCAAGATCCACTACATATGT+AGG - Chr4:41625274-41625293 MsG0480020445.01.T01:CDS 40.0%
CCACTACATATGTAGGCATA+GGG - Chr4:41625281-41625300 MsG0480020445.01.T01:CDS 40.0%
CTAAAAGATCTGCTCCATGT+TGG + Chr4:41622499-41622518 None:intergenic 40.0%
CTCAATGATGTCAGATGGAA+TGG - Chr4:41619751-41619770 MsG0480020445.01.T01:intron 40.0%
CTCCGATACCGTTTAAATTG+CGG + Chr4:41625568-41625587 None:intergenic 40.0%
CTCTATCATAAGCTGAAAGC+TGG + Chr4:41623629-41623648 None:intergenic 40.0%
CTCTGCAAGCAAAACATGAA+TGG + Chr4:41622888-41622907 None:intergenic 40.0%
CTGAAATGACAGATCCAAAG+TGG - Chr4:41621722-41621741 MsG0480020445.01.T01:intron 40.0%
CTGACTCAGATAAAACGAGA+CGG + Chr4:41623984-41624003 None:intergenic 40.0%
GAACATGGAACGTTAAACAC+TGG + Chr4:41621998-41622017 None:intergenic 40.0%
GAACGTTAAACACTGGAGTA+TGG + Chr4:41621991-41622010 None:intergenic 40.0%
GAATACCATCAAAGTAGACC+TGG - Chr4:41620525-41620544 MsG0480020445.01.T01:intron 40.0%
GACCGCAATTTAAACGGTAT+CGG - Chr4:41625563-41625582 MsG0480020445.01.T01:intron 40.0%
GGAATTGCAGAGCAAATTTG+AGG - Chr4:41622911-41622930 MsG0480020445.01.T01:intron 40.0%
GGCATTAACGTATGAATCCA+AGG - Chr4:41620875-41620894 MsG0480020445.01.T01:intron 40.0%
GGTGTTTCACAATACGACAA+TGG + Chr4:41619883-41619902 None:intergenic 40.0%
GTATGAGAAGTGAAGCTTGA+AGG + Chr4:41621807-41621826 None:intergenic 40.0%
GTCAACGGTCGAAAGAATAA+TGG + Chr4:41620351-41620370 None:intergenic 40.0%
GTTTCGGTGAGACTATTGAT+TGG + Chr4:41621363-41621382 None:intergenic 40.0%
TAACATGTTAATTAGGGGGG+TGG - Chr4:41622452-41622471 MsG0480020445.01.T01:intron 40.0%
TACACTGCAAGTTTCGTGTA+CGG + Chr4:41625630-41625649 None:intergenic 40.0%
TAGGGGATTGAATCTAGATG+TGG + Chr4:41623281-41623300 None:intergenic 40.0%
TATCCGAAGAAGGAAGAACA+AGG - Chr4:41618858-41618877 MsG0480020445.01.T01:CDS 40.0%
TCCACTACATATGTAGGCAT+AGG - Chr4:41625280-41625299 MsG0480020445.01.T01:CDS 40.0%
TCGTGAACATTGAAGGTCTT+TGG + Chr4:41621494-41621513 None:intergenic 40.0%
TCTGATGAAAGTAACCGGTA+AGG - Chr4:41623351-41623370 MsG0480020445.01.T01:intron 40.0%
TGAGCTTATGTTATGCAAGC+TGG - Chr4:41623740-41623759 MsG0480020445.01.T01:intron 40.0%
TGCAGCTTGTAAAGGGAAAA+AGG - Chr4:41618822-41618841 MsG0480020445.01.T01:CDS 40.0%
TGTCCTTGTTCTTCCTTCTT+CGG + Chr4:41618864-41618883 None:intergenic 40.0%
TGTTATCGCAACTGGTCATA+CGG - Chr4:41625872-41625891 MsG0480020445.01.T01:intron 40.0%
TGTTTATGGGGTATGGTAGT+TGG - Chr4:41620975-41620994 MsG0480020445.01.T01:intron 40.0%
TGTTTCAGTGGATCCTGAAA+TGG - Chr4:41619538-41619557 MsG0480020445.01.T01:intron 40.0%
TTCAAGGCCATAGAACTAGT+CGG + Chr4:41620825-41620844 None:intergenic 40.0%
TTCTTTAGTTGTGTGCATGC+TGG + Chr4:41623591-41623610 None:intergenic 40.0%
TTGGGAAAAGACTGTTCCAA+GGG + Chr4:41623209-41623228 None:intergenic 40.0%
TTGGTATCCATCAGAACTGT+TGG + Chr4:41621344-41621363 None:intergenic 40.0%
TTTAGAGGTCTCTGCAATTG+TGG + Chr4:41625489-41625508 None:intergenic 40.0%
! ACCAATTGCATTAAGGCATC+CGG - Chr4:41619083-41619102 MsG0480020445.01.T01:intron 40.0%
! ACTAAAGATTGGTTGGGACT+CGG + Chr4:41625058-41625077 None:intergenic 40.0%
! AGACCGACTAAAGATTGGTT+GGG + Chr4:41625064-41625083 None:intergenic 40.0%
! ATTGGCTCTCATCTGTATCT+TGG + Chr4:41621453-41621472 None:intergenic 40.0%
! CAGATAACCCTTTTATCAGG+GGG - Chr4:41620716-41620735 MsG0480020445.01.T01:intron 40.0%
! CATGTTTTGCTTGCAGAGAA+TGG - Chr4:41622890-41622909 MsG0480020445.01.T01:intron 40.0%
! GCTTTTCTGTTTATGGGGTA+TGG - Chr4:41620968-41620987 MsG0480020445.01.T01:intron 40.0%
! GTAGTTTTCTTCTACCCTTG+TGG + Chr4:41622149-41622168 None:intergenic 40.0%
! TCTGAAGTATTCACTGCTGA+TGG - Chr4:41625825-41625844 MsG0480020445.01.T01:CDS 40.0%
! TGGAGTACTATTCAATCCCT+TGG - Chr4:41623190-41623209 MsG0480020445.01.T01:intron 40.0%
! TGGCAAAGTGAGTTAGTTTG+GGG + Chr4:41621971-41621990 None:intergenic 40.0%
! TGGTTGTTTCAGTTGATCAC+GGG - Chr4:41619252-41619271 MsG0480020445.01.T01:intron 40.0%
! TTCTCTCTCTAGGAATTGGA+GGG - Chr4:41625110-41625129 MsG0480020445.01.T01:intron 40.0%
! TTCTTTCGACCGTTGACTAT+TGG - Chr4:41620354-41620373 MsG0480020445.01.T01:intron 40.0%
!! AAAACTACCGACTCTGAAGT+GGG - Chr4:41622161-41622180 MsG0480020445.01.T01:intron 40.0%
!! AAATGGTGAGTTGATGACAG+TGG - Chr4:41619392-41619411 MsG0480020445.01.T01:intron 40.0%
!! AAGTCTTTCGGTCCTTGTTT+TGG + Chr4:41625907-41625926 None:intergenic 40.0%
!! AATTTGGTGTTAGGATGTGG+AGG - Chr4:41621004-41621023 MsG0480020445.01.T01:intron 40.0%
!! ACTATAGTTGCCATTGGCTT+TGG - Chr4:41624616-41624635 MsG0480020445.01.T01:intron 40.0%
!! ATTATAAAGGGCGTTGTCGT+GGG + Chr4:41621935-41621954 None:intergenic 40.0%
!! CCTACATATGTAGTGGATCT+TGG + Chr4:41625277-41625296 None:intergenic 40.0%
!! GTGAGTTAATGATAGTGGTG+TGG - Chr4:41618944-41618963 MsG0480020445.01.T01:CDS 40.0%
!!! AGTCTTTCGGTCCTTGTTTT+GGG + Chr4:41625906-41625925 None:intergenic 40.0%
!!! GGGTTTTAAAATCGCAATCC+TGG - Chr4:41625301-41625320 MsG0480020445.01.T01:CDS 40.0%
AATGATCGCCATCTTGTTGC+TGG - Chr4:41622748-41622767 MsG0480020445.01.T01:intron 45.0%
ACTATAGCAGCCAAGGTTCA+TGG - Chr4:41622999-41623018 MsG0480020445.01.T01:intron 45.0%
ACTCAGATAAAACGAGACGG+AGG + Chr4:41623981-41624000 None:intergenic 45.0%
AGAGAGAAAGAGAGAGCTCA+CGG + Chr4:41624915-41624934 None:intergenic 45.0%
AGCCACGGAACAAACATCAA+GGG - Chr4:41621755-41621774 MsG0480020445.01.T01:intron 45.0%
AGTAGGGTGGATGTTGGAAA+AGG + Chr4:41620305-41620324 None:intergenic 45.0%
AGTGGTTACCTAATGAGCCA+CGG - Chr4:41621740-41621759 MsG0480020445.01.T01:intron 45.0%
ATAGCCATACACACGAGTGT+CGG - Chr4:41619048-41619067 MsG0480020445.01.T01:intron 45.0%
ATATTCTTCAGCACCCTAGC+AGG - Chr4:41621890-41621909 MsG0480020445.01.T01:intron 45.0%
ATCATATACTCCCTCCGTTC+CGG + Chr4:41624187-41624206 None:intergenic 45.0%
ATCCATCAGAACTGTTGGTC+AGG + Chr4:41621339-41621358 None:intergenic 45.0%
ATGGGCAAGTTTGAGAGCAA+TGG - Chr4:41625707-41625726 MsG0480020445.01.T01:intron 45.0%
ATGGTCACTCTTAGGCAGTA+GGG + Chr4:41620321-41620340 None:intergenic 45.0%
ATTGCTCTCAAACTTGCCCA+TGG + Chr4:41625708-41625727 None:intergenic 45.0%
CCCTATGCCTACATATGTAG+TGG + Chr4:41625284-41625303 None:intergenic 45.0%
CGGAATCTATCCCCAAAACA+AGG - Chr4:41625892-41625911 MsG0480020445.01.T01:intron 45.0%
CTAGAGAGAGAACGAGAGTT+CGG + Chr4:41625102-41625121 None:intergenic 45.0%
CTATAGATTCGTCGATGACC+TGG + Chr4:41623863-41623882 None:intergenic 45.0%
GAAACAAGGCATGTTGGGTA+AGG + Chr4:41621271-41621290 None:intergenic 45.0%
GATTACTGTCCTTTCTGCGA+AGG + Chr4:41625742-41625761 None:intergenic 45.0%
GGCTCATTAGGTAACCACTT+TGG + Chr4:41621739-41621758 None:intergenic 45.0%
GGGGATTGAATCTAGATGTG+GGG + Chr4:41623279-41623298 None:intergenic 45.0%
GTGAAGCTTGAAGGAGGAAT+AGG + Chr4:41621798-41621817 None:intergenic 45.0%
TACAATGGTCAAGGTTCTCG+TGG + Chr4:41621701-41621720 None:intergenic 45.0%
TATGGTCACTCTTAGGCAGT+AGG + Chr4:41620322-41620341 None:intergenic 45.0%
TGAGAAGTGAAGCTTGAAGG+AGG + Chr4:41621804-41621823 None:intergenic 45.0%
TGAGATGATGACTGCTCACA+TGG - Chr4:41620033-41620052 MsG0480020445.01.T01:intron 45.0%
TGATCACGGGATGCAAGTTA+CGG - Chr4:41619265-41619284 MsG0480020445.01.T01:intron 45.0%
TGCAAGTTACGGAGGGAAAA+AGG - Chr4:41619276-41619295 MsG0480020445.01.T01:intron 45.0%
TGTTGCTACTATAGCAGCCA+AGG - Chr4:41622992-41623011 MsG0480020445.01.T01:intron 45.0%
TGTTTGTTCCGTGGCTCATT+AGG + Chr4:41621751-41621770 None:intergenic 45.0%
TTCCCTTGATGTTTGTTCCG+TGG + Chr4:41621760-41621779 None:intergenic 45.0%
TTGAATCTAGATGTGGGGCT+TGG + Chr4:41623274-41623293 None:intergenic 45.0%
TTGTGGTCTCTTCAACCCAT+TGG + Chr4:41625472-41625491 None:intergenic 45.0%
! ACAATAATGGTGATGTGCCC+AGG + Chr4:41625322-41625341 None:intergenic 45.0%
! CTCGTTCTCTCTCTAGGAAT+TGG - Chr4:41625106-41625125 MsG0480020445.01.T01:intron 45.0%
! GACCGTTGACTATTGGATTG+TGG - Chr4:41620361-41620380 MsG0480020445.01.T01:intron 45.0%
! GTTCTCTCTCTAGGAATTGG+AGG - Chr4:41625109-41625128 MsG0480020445.01.T01:intron 45.0%
! TGGTGAGTTGAGGTATGATG+TGG - Chr4:41619674-41619693 MsG0480020445.01.T01:intron 45.0%
!! ATTATAGGAGGTGGTGTTGC+TGG - Chr4:41624837-41624856 MsG0480020445.01.T01:CDS 45.0%
!! GAAAACTACCGACTCTGAAG+TGG - Chr4:41622160-41622179 MsG0480020445.01.T01:intron 45.0%
!! GATTATAAAGGGCGTTGTCG+TGG + Chr4:41621936-41621955 None:intergenic 45.0%
!!! GTCTTTCGGTCCTTGTTTTG+GGG + Chr4:41625905-41625924 None:intergenic 45.0%
!! ATAAAATCATATAATTATAA+GGG + Chr4:41622778-41622797 None:intergenic 5.0%
!! ATGAAATTAATAATAAAAAA+AGG - Chr4:41623519-41623538 MsG0480020445.01.T01:intron 5.0%
!! TTTATTTATCAATTTATTAT+TGG - Chr4:41623830-41623849 MsG0480020445.01.T01:intron 5.0%
AAAGAAGCCCTTGCTGCAGA+AGG - Chr4:41622104-41622123 MsG0480020445.01.T01:intron 50.0%
AACCCACCAGAGGCCATTAT+TGG + Chr4:41621471-41621490 None:intergenic 50.0%
AAGAAGCCCTTGCTGCAGAA+GGG - Chr4:41622105-41622124 MsG0480020445.01.T01:intron 50.0%
ACAAGGCATGTTGGGTAAGG+AGG + Chr4:41621268-41621287 None:intergenic 50.0%
ACTCGTGTGTATGGCTATGC+GGG + Chr4:41619046-41619065 None:intergenic 50.0%
ACTGTCCTTTCTGCGAAGGA+TGG + Chr4:41625738-41625757 None:intergenic 50.0%
AGCCAATAATGGCCTCTGGT+GGG - Chr4:41621466-41621485 MsG0480020445.01.T01:intron 50.0%
ATGTTAATTAGGGGGGTGGC+GGG - Chr4:41622456-41622475 MsG0480020445.01.T01:intron 50.0%
CACGCAGGATACTGAGTCAA+TGG + Chr4:41621101-41621120 None:intergenic 50.0%
CACTCGTGTGTATGGCTATG+CGG + Chr4:41619047-41619066 None:intergenic 50.0%
CAGCAATCCCACTTCAGAGT+CGG + Chr4:41622171-41622190 None:intergenic 50.0%
CATGTTAATTAGGGGGGTGG+CGG - Chr4:41622455-41622474 MsG0480020445.01.T01:intron 50.0%
CCAACCCAGGTCTACTTTGA+TGG + Chr4:41620533-41620552 None:intergenic 50.0%
CCATCAAAGTAGACCTGGGT+TGG - Chr4:41620530-41620549 MsG0480020445.01.T01:intron 50.0%
CGAACTCTCGTTCTCTCTCT+AGG - Chr4:41625100-41625119 MsG0480020445.01.T01:intron 50.0%
CTCAACTGCAGAGTGGATCA+TGG - Chr4:41620503-41620522 MsG0480020445.01.T01:intron 50.0%
GACGGTGTTCAACACCACAA+GGG - Chr4:41622132-41622151 MsG0480020445.01.T01:intron 50.0%
GAGCCACGGAACAAACATCA+AGG - Chr4:41621754-41621773 MsG0480020445.01.T01:intron 50.0%
GCCGGATGCCTTAATGCAAT+TGG + Chr4:41619087-41619106 None:intergenic 50.0%
GGCAAGTTTGAGAGCAATGG+TGG - Chr4:41625710-41625729 MsG0480020445.01.T01:intron 50.0%
GGGAATACTCAACTGCAGAG+TGG - Chr4:41620496-41620515 MsG0480020445.01.T01:intron 50.0%
GTCAGATATTCCGGAACGGA+GGG - Chr4:41624174-41624193 MsG0480020445.01.T01:CDS 50.0%
GTCGGAAACCACCAAGTAGT+CGG - Chr4:41619020-41619039 MsG0480020445.01.T01:intron 50.0%
GTGAGCAGTCATCATCTCAG+AGG + Chr4:41620032-41620051 None:intergenic 50.0%
TCAACCGACACTCGTGTGTA+TGG + Chr4:41619055-41619074 None:intergenic 50.0%
TGAGAGCCAATAATGGCCTC+TGG - Chr4:41621462-41621481 MsG0480020445.01.T01:intron 50.0%
TTAGGCAGTAGGGTGGATGT+TGG + Chr4:41620311-41620330 None:intergenic 50.0%
! AGGGTGTTCCAGCAACAAGA+TGG + Chr4:41622759-41622778 None:intergenic 50.0%
! GGGGAAAAAGGCATACGAAC+AGG - Chr4:41618738-41618757 MsG0480020445.01.T01:CDS 50.0%
! GTCCTGACCAACAGTTCTGA+TGG - Chr4:41621334-41621353 MsG0480020445.01.T01:intron 50.0%
! TCAAAGTAGACCTGGGTTGG+AGG - Chr4:41620533-41620552 MsG0480020445.01.T01:intron 50.0%
! TTTTGCAACACCTCCAACCC+AGG + Chr4:41620546-41620565 None:intergenic 50.0%
!! ACTCTGAAGTGGGATTGCTG+TGG - Chr4:41622171-41622190 MsG0480020445.01.T01:intron 50.0%
!! CTCTGAAGTGGGATTGCTGT+GGG - Chr4:41622172-41622191 MsG0480020445.01.T01:intron 50.0%
AAGTGGGATTGCTGTGGGCT+CGG - Chr4:41622177-41622196 MsG0480020445.01.T01:intron 55.0%
ACTAGGCCTTTCGTCCTGCT+AGG + Chr4:41621907-41621926 None:intergenic 55.0%
AGAACTGTTGGTCAGGACGC+AGG + Chr4:41621332-41621351 None:intergenic 55.0%
AGAAGCCCTTGCTGCAGAAG+GGG - Chr4:41622106-41622125 MsG0480020445.01.T01:intron 55.0%
CACGGGATGCAAGTTACGGA+GGG - Chr4:41619269-41619288 MsG0480020445.01.T01:intron 55.0%
CGCCATTGTTGCTGCAGCAA+TGG + Chr4:41621614-41621633 None:intergenic 55.0%
CTAGGCCTTTCGTCCTGCTA+GGG + Chr4:41621906-41621925 None:intergenic 55.0%
GAGCCAATAATGGCCTCTGG+TGG - Chr4:41621465-41621484 MsG0480020445.01.T01:intron 55.0%
GGACGGTGTTCAACACCACA+AGG - Chr4:41622131-41622150 MsG0480020445.01.T01:intron 55.0%
GGCCATTGCTGCAGCAACAA+TGG - Chr4:41621609-41621628 MsG0480020445.01.T01:intron 55.0%
GGCGCACATGTTTCAGCAAG+TGG - Chr4:41621630-41621649 MsG0480020445.01.T01:intron 55.0%
GGTCAGATATTCCGGAACGG+AGG - Chr4:41624173-41624192 MsG0480020445.01.T01:CDS 55.0%
GTCACTCTTAGGCAGTAGGG+TGG + Chr4:41620318-41620337 None:intergenic 55.0%
TCACGGGATGCAAGTTACGG+AGG - Chr4:41619268-41619287 MsG0480020445.01.T01:intron 55.0%
TCCATCCCCTTCTGCAGCAA+GGG + Chr4:41622114-41622133 None:intergenic 55.0%
TGCAGCAGTTGAGAGCTGCT+AGG - Chr4:41622948-41622967 MsG0480020445.01.T01:intron 55.0%
TGGAGCCATCCTTCGCAGAA+AGG - Chr4:41625730-41625749 MsG0480020445.01.T01:CDS 55.0%
TTGCTGCAGAAGGGGATGGA+CGG - Chr4:41622114-41622133 MsG0480020445.01.T01:intron 55.0%
!! AGGTCTTTGGAACCCACCAG+AGG + Chr4:41621481-41621500 None:intergenic 55.0%
!! CGTTGTCGTGGGAGAGTACT+AGG + Chr4:41621924-41621943 None:intergenic 55.0%
!! GTGAGTTGATGACAGTGGCG+TGG - Chr4:41619397-41619416 MsG0480020445.01.T01:intron 55.0%
CAGCACCCTAGCAGGACGAA+AGG - Chr4:41621898-41621917 MsG0480020445.01.T01:intron 60.0%
GTCCATCCCCTTCTGCAGCA+AGG + Chr4:41622115-41622134 None:intergenic 60.0%
TATGCGGGCCGACTACTTGG+TGG + Chr4:41619031-41619050 None:intergenic 60.0%
GCCCTTGCTGCAGAAGGGGA+TGG - Chr4:41622110-41622129 MsG0480020445.01.T01:intron 65.0%
GGCTATGCGGGCCGACTACT+TGG + Chr4:41619034-41619053 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 41618723 41625959 41618723 ID=MsG0480020445.01;Name=MsG0480020445.01
Chr4 mRNA 41618723 41625959 41618723 ID=MsG0480020445.01.T01;Parent=MsG0480020445.01;Name=MsG0480020445.01.T01;_AED=0.37;_eAED=0.42;_QI=0|0.14|0|1|0.42|0.25|8|0|351
Chr4 exon 41625950 41625959 41625950 ID=MsG0480020445.01.T01:exon:4415;Parent=MsG0480020445.01.T01
Chr4 exon 41625722 41625855 41625722 ID=MsG0480020445.01.T01:exon:4414;Parent=MsG0480020445.01.T01
Chr4 exon 41625208 41625418 41625208 ID=MsG0480020445.01.T01:exon:4413;Parent=MsG0480020445.01.T01
Chr4 exon 41625007 41625111 41625007 ID=MsG0480020445.01.T01:exon:4412;Parent=MsG0480020445.01.T01
Chr4 exon 41624829 41624917 41624829 ID=MsG0480020445.01.T01:exon:4411;Parent=MsG0480020445.01.T01
Chr4 exon 41624073 41624196 41624073 ID=MsG0480020445.01.T01:exon:4410;Parent=MsG0480020445.01.T01
Chr4 exon 41619769 41619877 41619769 ID=MsG0480020445.01.T01:exon:4409;Parent=MsG0480020445.01.T01
Chr4 exon 41618723 41618996 41618723 ID=MsG0480020445.01.T01:exon:4408;Parent=MsG0480020445.01.T01
Chr4 CDS 41625950 41625959 41625950 ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4 CDS 41625722 41625855 41625722 ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4 CDS 41625208 41625418 41625208 ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4 CDS 41625007 41625111 41625007 ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4 CDS 41624829 41624917 41624829 ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4 CDS 41624073 41624196 41624073 ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4 CDS 41619769 41619877 41619769 ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Chr4 CDS 41618723 41618996 41618723 ID=MsG0480020445.01.T01:cds;Parent=MsG0480020445.01.T01
Gene Sequence

>MsG0480020445.01.T01

ATGAAAGTAACTTGTAAAGGGAAAAAGGCGAAAGTTATTACTATCCGAAGAAGGAAGAACAAGGACAAAAATCTAGCTGGAAGAGAAAACGCAGAAGCTGTTGACGTTGTTGTAGAAGAGCAAAATGGTGAGTTAATGATAGTGTTGATCACGGGATGCAAGTTACGGAGGGAAAAAGGCGAAAGTTTCAACCAGCCGAAAAAAGAAAAACAAGGACAAAATCTAGTTGGAAGAGAAAATCTAGAAGATGTTGAAGTTGATTTAGAAGAGCAAAATGGTGAGTTGATGACAGTGGCGTGGCTTCTCTACTGTGATTGTGAACAAGATATTTTACTGTCTATAAGTGCATATAAGTGGAAAAAGGTGAAAGCTACTACTAGTCGAAAAAGGAAGAACAAGGACAAAAATCTAGTTGGAAGACAAACACCAGAAGATGAAGTTGATTTAGAAGAGCAAAATGATGGAATGGAACATAGTGATTCTAAAGAAGAGGAAGTCAAAGACTCCAAGAAGCACAGAGATTCTAATGTTGAAGCAGCTATCAACCTTCTTTTGACTTGGGAATACTCAACTGCAGAGTGGATCATGGAATACCATCAAAGTAGACCTGGGTTGGAGGTGTTGCAAAATCAATTGAAGACTATTAACTACATACGAGGAAAAATTGGAAGAGATAAAATAAAAATGGTGGAAAAGAAAGTTGTGATTATAGGAGGTGGTGTTGCTGGTGCTGTCCTTGCTAAAACTATACAACATCATGCTAATGTCACTCTTATTGATCCGAAGGAGTATTTTGAGATTCCATGGGCAAGTTTGAGAGCAATGGTGGAGCCATCCTTCGCAGAAAGGACAGTAATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAAGTGCCATCAACATAACTGAATCTGAAGTATTCACTGCTGATGGCCGTGAAATTGCCTATGATTATCTTGTTATCGCAACTGGTCATACGGAATCTATCCCCAAAACAAGGACCGAAAGACTTGACCAATACAAAGGAGTAAGCAATGATACTTAG

Protein sequence

>MsG0480020445.01.T01

MKVTCKGKKAKVITIRRRKNKDKNLAGRENAEAVDVVVEEQNGELMIVLITGCKLRREKGESFNQPKKEKQGQNLVGRENLEDVEVDLEEQNGELMTVAWLLYCDCEQDILLSISAYKWKKVKATTSRKRKNKDKNLVGRQTPEDEVDLEEQNDGMEHSDSKEEEVKDSKKHRDSNVEAAINLLLTWEYSTAEWIMEYHQSRPGLEVLQNQLKTINYIRGKIGRDKIKMVEKKVVIIGGGVAGAVLAKTIQHHANVTLIDPKEYFEIPWASLRAMVEPSFAERTVINHREYFTKGDLVISSAINITESEVFTADGREIAYDYLVIATGHTESIPKTRTERLDQYKGVSNDT*