AlfalfaGEDB | MsG0880042843.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042843.01

KEGG: -
GO: -
PFAM: PF13639

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042843.01.T01	RHN39583.1	90.769	130	12	0	1	130	16	145	2.97E-81	245

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042843.01.T01	P0C035	38.554	83	30	1	34	95	120	202	1.23E-13	68.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042843.01.T01	A0A396GFZ5	90.769	130	12	0	1	130	16	145	1.42e-81	245

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048035.01	MsG0880042843.01	0.863210	2.929047e-64	8.810357e-61
MsG0080048177.01	MsG0880042843.01	0.855495	6.070069e-62	1.404083e-58
MsG0080048178.01	MsG0880042843.01	0.814578	1.434592e-51	9.662465e-49
MsG0080048205.01	MsG0880042843.01	0.835841	1.326844e-56	1.642225e-53
MsG0080048207.01	MsG0880042843.01	0.824073	9.834178e-54	8.620503e-51
MsG0080048387.01	MsG0880042843.01	0.802573	5.262658e-49	2.586710e-46
MsG0080048410.01	MsG0880042843.01	0.806809	6.867129e-50	3.763081e-47
MsG0080048656.01	MsG0880042843.01	0.805101	1.570352e-49	8.236400e-47
MsG0080048915.01	MsG0880042843.01	0.836413	9.498318e-57	1.196089e-53
MsG0180000019.01	MsG0880042843.01	0.802291	6.016086e-49	2.936025e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042843.01.T01	MTR_7g117540	57.447	47	20	0	34	80	101	147	2.97e-15	70.5
MsG0880042843.01.T01	MTR_1g043410	45.833	72	34	1	9	80	103	169	7.21e-15	69.7
MsG0880042843.01.T01	MTR_6g007670	38.554	83	50	1	5	86	142	224	1.11e-14	68.6
MsG0880042843.01.T01	MTR_6g007670	41.509	53	31	0	34	86	33	85	1.01e-12	63.2
MsG0880042843.01.T01	MTR_7g116210	50.000	50	25	0	28	77	29	78	4.00e-14	64.3
MsG0880042843.01.T01	MTR_7g116200	50.000	50	25	0	28	77	87	136	5.43e-14	65.1
MsG0880042843.01.T01	MTR_8g093010	58.140	43	18	0	34	76	134	176	5.77e-14	66.2
MsG0880042843.01.T01	MTR_5g082940	54.000	50	22	1	30	79	100	148	8.08e-14	64.7
MsG0880042843.01.T01	MTR_5g026730	32.979	94	59	1	10	103	74	163	9.43e-14	64.7
MsG0880042843.01.T01	MTR_8g066780	52.632	57	25	1	34	88	142	198	1.32e-13	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042843.01.T01	AT1G53820	38.554	83	30	1	34	95	120	202	1.25e-14	68.9
MsG0880042843.01.T01	AT4G40070	43.478	69	38	1	22	89	111	179	2.75e-14	68.2
MsG0880042843.01.T01	AT3G14320	50.000	46	23	0	34	79	88	133	6.45e-14	65.9
MsG0880042843.01.T01	AT5G43420	53.191	47	22	0	34	80	138	184	1.35e-13	66.2
MsG0880042843.01.T01	AT1G72310	47.826	46	24	0	34	79	127	172	1.46e-13	66.2
MsG0880042843.01.T01	AT5G06490	38.961	77	44	1	4	77	96	172	1.50e-13	64.7
MsG0880042843.01.T01	AT3G18930	39.683	63	38	0	17	79	139	201	2.46e-13	65.9
MsG0880042843.01.T01	AT3G18930	39.683	63	38	0	17	79	139	201	2.46e-13	65.9
MsG0880042843.01.T01	AT3G18930	39.683	63	38	0	17	79	139	201	2.46e-13	65.9
MsG0880042843.01.T01	AT1G53010	43.421	76	41	1	6	79	100	175	5.16e-13	62.8

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Find 16 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATCAATAAACTACA+GGG	0.688994	8:+14775634	None:intergenic
AAAGTCTCAGTGATACTAGA+TGG	0.508743	8:+14775657	None:intergenic
AGATATCATGCTGATTGTAT+TGG	0.513302	8:-14775846	MsG0880042843.01.T01:CDS
ATCCTACATGTCCTCTTTGT+AGG	0.420010	8:-14775806	MsG0880042843.01.T01:CDS
ATGCTGATTGTATTGGTGCT+TGG	0.457961	8:-14775839	MsG0880042843.01.T01:CDS
CAAGAATGATGGTTCAGTGA+AGG	0.600245	8:-14775961	MsG0880042843.01.T01:CDS
CATAAACTCTGCAAGAATGA+TGG	0.493226	8:-14775972	MsG0880042843.01.T01:CDS
CATCAGAGAAACTTTGTACA+AGG	0.580071	8:+14775709	None:intergenic
CTCCTACAAAGAGGACATGT+AGG	0.557247	8:+14775804	None:intergenic
GAAATCCTTTGAAGAATCTT+TGG	0.271628	8:-14775736	MsG0880042843.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGTAAAGGAGAAAAAGTTA+AGG	-	Chr8:14775763-14775782	MsG0880042843.01.T01:CDS	30.0%
TGTTTAAGCCAAATGTGTAA+AGG	-	Chr8:14775749-14775768	MsG0880042843.01.T01:CDS	30.0%
AAAGTCTCAGTGATACTAGA+TGG	+	Chr8:14775998-14776017	None:intergenic	35.0%
CATAAACTCTGCAAGAATGA+TGG	-	Chr8:14775680-14775699	MsG0880042843.01.T01:CDS	35.0%
CATCAGAGAAACTTTGTACA+AGG	+	Chr8:14775946-14775965	None:intergenic	35.0%
GTCAACCAAAGATTCTTCAA+AGG	+	Chr8:14775924-14775943	None:intergenic	35.0%
TCAGTGAAGGAAATAGATCA+AGG	-	Chr8:14775704-14775723	MsG0880042843.01.T01:CDS	35.0%
ATCCTACATGTCCTCTTTGT+AGG	-	Chr8:14775846-14775865	MsG0880042843.01.T01:CDS	40.0%
CAAGAATGATGGTTCAGTGA+AGG	-	Chr8:14775691-14775710	MsG0880042843.01.T01:CDS	40.0%
GCAGAGTTTATGCAGAATCT+TGG	+	Chr8:14775672-14775691	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	14775641	14776033	14775641	ID=MsG0880042843.01;Name=MsG0880042843.01
Chr8	mRNA	14775641	14776033	14775641	ID=MsG0880042843.01.T01;Parent=MsG0880042843.01;Name=MsG0880042843.01.T01;_AED=0.31;_eAED=0.31;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|130
Chr8	exon	14775641	14776033	14775641	ID=MsG0880042843.01.T01:exon:36974;Parent=MsG0880042843.01.T01
Chr8	CDS	14775641	14776033	14775641	ID=MsG0880042843.01.T01:cds;Parent=MsG0880042843.01.T01

Gene Sequence

>MsG0880042843.01.T01

ATGGCTAACTCATTTCAAGAAAACATAACCAAGATTCTGCATAAACTCTGCAAGAATGATGGTTCAGTGAAGGAAATAGATCAAGGTGAAAGTGATTGTTGTTCAGTTTGTTTAAGCCAAATGTGTAAAGGAGAAAAAGTTAAGGTATTACCTTTATGTAATCATAGATATCATGCTGATTGTATTGGTGCTTGGTTGAAGAACAATCCTACATGTCCTCTTTGTAGGAGCAAAATCAGTAACCATAGTAATAATCAGAATCAACAAAAACAGGTGAAATCCTTTGAAGAATCTTTGGTTGACCTTGTACAAAGTTTCTCTGATGTACTTGTAGCTATTCTTTATATGATTCTGCCATCTAGTATCACTGAGACTTTCCCTGTAGTTTATTGA

Protein sequence

>MsG0880042843.01.T01

MANSFQENITKILHKLCKNDGSVKEIDQGESDCCSVCLSQMCKGEKVKVLPLCNHRYHADCIGAWLKNNPTCPLCRSKISNHSNNQNQQKQVKSFEESLVDLVQSFSDVLVAILYMILPSSITETFPVVY*