AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027785.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027785.01.T01 MTR_0558s0020 84.783 138 20 1 88 224 1 138 1.39e-77 235
MsG0580027785.01.T01 MTR_4g040430 82.482 137 24 0 88 224 1 137 2.82e-77 231
MsG0580027785.01.T01 MTR_3g008240 82.609 138 23 1 88 224 1 138 6.48e-77 230
MsG0580027785.01.T01 MTR_1g083640 75.163 153 22 1 88 224 1 153 7.13e-76 231
MsG0580027785.01.T01 MTR_2g014100 76.027 146 26 1 88 224 1 146 2.29e-72 221
MsG0580027785.01.T01 MTR_5g071590 72.000 150 29 2 88 224 1 150 3.25e-71 215
MsG0580027785.01.T01 MTR_1281s0010 78.378 111 24 0 106 216 1 111 1.75e-59 183
MsG0580027785.01.T01 MTR_4g008820 85.057 87 12 1 81 166 118 204 1.23e-40 147
MsG0580027785.01.T01 MTR_8g446020 56.934 137 20 1 88 224 1 98 2.96e-40 139
MsG0580027785.01.T01 MTR_0337s0040 57.664 137 18 2 88 223 1 98 8.37e-39 134
MsG0580027785.01.T01 MTR_8g046060 78.409 88 10 2 88 166 91 178 5.56e-35 124
MsG0580027785.01.T01 MTR_6g090505 78.082 73 16 0 152 224 1 73 8.39e-32 119
MsG0580027785.01.T01 MTR_1g055240 85.106 47 7 0 178 224 3 49 1.40e-21 87.4
MsG0580027785.01.T01 MTR_0019s0290 67.857 56 18 0 169 224 9 64 8.29e-19 80.5
MsG0580027785.01.T01 MTR_4g029620 51.807 83 36 2 1 80 1 82 1.04e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGACATGTGGTTTCTTTAC+CGG 0.244384 5:-68439027 None:intergenic
CCTCAGGGTCTTGCACAATA+TGG 0.317263 5:+68438868 MsG0580027785.01.T01:CDS
GTACAGACCTTCGATGAAAA+AGG 0.379677 5:+68438942 MsG0580027785.01.T01:CDS
TTCTCATACTCAACAAGAAC+TGG 0.395633 5:-68441249 None:intergenic
TGTTCTCATTGTCATCCCTC+AGG 0.396416 5:+68438852 MsG0580027785.01.T01:CDS
CCATGATTCTTTATCACTAA+AGG 0.406174 5:-68441010 None:intergenic
TAAAGAATCATGGAAGTCTT+TGG 0.408500 5:+68441020 MsG0580027785.01.T01:CDS
ATAACACTGGATTCTCTGTT+AGG 0.417808 5:+68441091 MsG0580027785.01.T01:CDS
CCACTTCCACCTTCTTATAG+TGG 0.422554 5:+68438892 MsG0580027785.01.T01:CDS
AGCTGGAATATATTTGAAGT+TGG 0.433136 5:+68441308 MsG0580027785.01.T01:CDS
GGATGACAATGAGAACAATA+AGG 0.444023 5:-68438846 None:intergenic
GAAAGGGTTGGTTGTAAAGC+TGG 0.447509 5:+68441291 MsG0580027785.01.T01:CDS
ATCTGAGAGTGGACAATTGA+CGG 0.452529 5:+68440945 MsG0580027785.01.T01:CDS
CTTTACCGGTGGCTTGAAAA+CGG 0.463173 5:-68439013 None:intergenic
GCTTCTCAACCTGTGGTTTG+CGG 0.467537 5:-68439047 None:intergenic
ACAAAATAAGAAATCGGATA+AGG 0.469178 5:+68441140 MsG0580027785.01.T01:CDS
TTACAACCAACCCTTTCCTC+TGG 0.485330 5:-68441285 None:intergenic
TTTAATTATGCATATAACAC+TGG 0.485542 5:+68441078 MsG0580027785.01.T01:CDS
CAATTCACAAAATAAGAAAT+CGG 0.490263 5:+68441134 MsG0580027785.01.T01:CDS
CACTTCCACCTTCTTATAGT+GGG 0.493496 5:+68438893 MsG0580027785.01.T01:CDS
GTTCTCATTGTCATCCCTCA+GGG 0.506336 5:+68438853 MsG0580027785.01.T01:CDS
ACGGAGGGCTTCTCAACTGA+TGG 0.534124 5:-68438994 None:intergenic
TAACAAAGAAGGTTTCAAGA+AGG 0.538422 5:+68441185 MsG0580027785.01.T01:CDS
TGTTATGCTTGTAACAAAGA+AGG 0.541604 5:+68441174 MsG0580027785.01.T01:CDS
CCTTTAGTGATAAAGAATCA+TGG 0.543522 5:+68441010 MsG0580027785.01.T01:CDS
AACAAAGAAGGTTTCAAGAA+GGG 0.545537 5:+68441186 MsG0580027785.01.T01:CDS
CCACTATAAGAAGGTGGAAG+TGG 0.551803 5:-68438892 None:intergenic
TACACTGGTAACTTCTTATG+TGG 0.557016 5:-68438922 None:intergenic
TGAAAATTCAGTTATTGATG+CGG 0.565546 5:+68440969 MsG0580027785.01.T01:CDS
TTCATCGAAGGTCTGTACAC+TGG 0.571571 5:-68438937 None:intergenic
ACCGGTGGCTTGAAAACGGA+GGG 0.572017 5:-68439009 None:intergenic
TCAACTGATGGTTTGTACAC+CGG 0.578953 5:-68438982 None:intergenic
ACCTGTGGTTTGCGGACATG+TGG 0.581430 5:-68439039 None:intergenic
ACCACATGTCCGCAAACCAC+AGG 0.582421 5:+68439038 MsG0580027785.01.T01:CDS
GAACAATAAGGAGCAACACT+AGG 0.584999 5:-68438834 None:intergenic
ACATGTGGTTTCTTTACCGG+TGG 0.602618 5:-68439024 None:intergenic
ACTGGTAACTTCTTATGTGG+TGG 0.603411 5:-68438919 None:intergenic
GGTAACTTCTTATGTGGTGG+CGG 0.608302 5:-68438916 None:intergenic
ATATCAACTTCATCTGAGAG+TGG 0.614980 5:+68440934 MsG0580027785.01.T01:CDS
AGAACTGGACTGTCACATGT+TGG 0.620791 5:-68441234 None:intergenic
GGTGGCGGCCCACTATAAGA+AGG 0.627695 5:-68438901 None:intergenic
CCATATTGTGCAAGACCCTG+AGG 0.632435 5:-68438868 None:intergenic
GAGCAACACTAGGAAGCGAA+AGG 0.635375 5:-68438824 None:intergenic
TACCGGTGGCTTGAAAACGG+AGG 0.650026 5:-68439010 None:intergenic
CATATTGTGCAAGACCCTGA+GGG 0.652621 5:-68438867 None:intergenic
GGCGGCCCACTATAAGAAGG+TGG 0.656159 5:-68438898 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAACAAATTAAATTATT+CGG + Chr5:68439513-68439532 MsG0580027785.01.T01:intron 10.0%
!!! ATTAAATCTTTTCTTTTTTA+AGG - Chr5:68439618-68439637 None:intergenic 10.0%
!! AACCCAAATAAAAAAAAAAT+AGG - Chr5:68439672-68439691 None:intergenic 15.0%
!! ATCAACAAATTAAATTATTC+GGG + Chr5:68439514-68439533 MsG0580027785.01.T01:intron 15.0%
!! TTTCAATTTATCATATCTAA+TGG + Chr5:68440866-68440885 MsG0580027785.01.T01:intron 15.0%
!!! ATATTGATTACTTATTTTCT+TGG - Chr5:68439196-68439215 None:intergenic 15.0%
!!! TGCCTATTTTTTTTTTATTT+GGG + Chr5:68439667-68439686 MsG0580027785.01.T01:intron 15.0%
!!! TTTTTAAGGAAAAGATTAAA+TGG - Chr5:68439604-68439623 None:intergenic 15.0%
!! AAAAACTATGTTAAAACCAT+TGG - Chr5:68440830-68440849 None:intergenic 20.0%
!! ATACGTACATATAACTTATT+AGG - Chr5:68439164-68439183 None:intergenic 20.0%
!! CAATTCACAAAATAAGAAAT+CGG + Chr5:68441134-68441153 MsG0580027785.01.T01:CDS 20.0%
!! TACGTACATATAACTTATTA+GGG - Chr5:68439163-68439182 None:intergenic 20.0%
!! TTTAATTATGCATATAACAC+TGG + Chr5:68441078-68441097 MsG0580027785.01.T01:CDS 20.0%
!!! ATGCTTTAAAATTGAAGTTA+AGG + Chr5:68440426-68440445 MsG0580027785.01.T01:intron 20.0%
!!! GAATCATTTAAAATAACTGT+TGG + Chr5:68440695-68440714 MsG0580027785.01.T01:intron 20.0%
!!! GTGCCTATTTTTTTTTTATT+TGG + Chr5:68439666-68439685 MsG0580027785.01.T01:intron 20.0%
! ACAAAATAAGAAATCGGATA+AGG + Chr5:68441140-68441159 MsG0580027785.01.T01:CDS 25.0%
! AGGCAGTTAGAAATTATAAA+AGG - Chr5:68439463-68439482 None:intergenic 25.0%
! TAAAATGGAGCAACAAAAAA+TGG + Chr5:68439306-68439325 MsG0580027785.01.T01:intron 25.0%
! TGAAAATTCAGTTATTGATG+CGG + Chr5:68440969-68440988 MsG0580027785.01.T01:CDS 25.0%
!!! CTTATTTTGTGAATTGTTCT+TGG - Chr5:68441130-68441149 None:intergenic 25.0%
AAATCAGAACCATTAGATCA+AGG + Chr5:68439804-68439823 MsG0580027785.01.T01:intron 30.0%
AACAAAGAAGGTTTCAAGAA+GGG + Chr5:68441186-68441205 MsG0580027785.01.T01:CDS 30.0%
ATTGTGTTAGATGCACAAAA+GGG + Chr5:68439735-68439754 MsG0580027785.01.T01:intron 30.0%
CATATAAATGAATAACTCGC+CGG - Chr5:68440281-68440300 None:intergenic 30.0%
CCATGATTCTTTATCACTAA+AGG - Chr5:68441013-68441032 None:intergenic 30.0%
CCTTTAGTGATAAAGAATCA+TGG + Chr5:68441010-68441029 MsG0580027785.01.T01:CDS 30.0%
GGCAAAAGTTATTATGCATA+AGG + Chr5:68439756-68439775 MsG0580027785.01.T01:intron 30.0%
TAAAGAAAAACCAGAGGAAA+GGG + Chr5:68441275-68441294 MsG0580027785.01.T01:CDS 30.0%
TAAAGAATCATGGAAGTCTT+TGG + Chr5:68441020-68441039 MsG0580027785.01.T01:CDS 30.0%
TAACAAAGAAGGTTTCAAGA+AGG + Chr5:68441185-68441204 MsG0580027785.01.T01:CDS 30.0%
TATTGTGTTAGATGCACAAA+AGG + Chr5:68439734-68439753 MsG0580027785.01.T01:intron 30.0%
TGTTATGCTTGTAACAAAGA+AGG + Chr5:68441174-68441193 MsG0580027785.01.T01:CDS 30.0%
! AGCTGGAATATATTTGAAGT+TGG + Chr5:68441308-68441327 MsG0580027785.01.T01:CDS 30.0%
! TGTATCTTAGTTTGAATCCT+TGG + Chr5:68439243-68439262 MsG0580027785.01.T01:intron 30.0%
AAGACAAGACTAGCATGTTA+AGG - Chr5:68439483-68439502 None:intergenic 35.0%
AATGGAGCAACAAAAAATGG+TGG + Chr5:68439309-68439328 MsG0580027785.01.T01:intron 35.0%
ATAACACTGGATTCTCTGTT+AGG + Chr5:68441091-68441110 MsG0580027785.01.T01:CDS 35.0%
ATATACAGCACTGTAAACCA+AGG - Chr5:68439263-68439282 None:intergenic 35.0%
ATATCAACTTCATCTGAGAG+TGG + Chr5:68440934-68440953 MsG0580027785.01.T01:CDS 35.0%
CATAAGGATTTCCTTATGCA+TGG + Chr5:68439772-68439791 MsG0580027785.01.T01:intron 35.0%
CTAAAGAAAAACCAGAGGAA+AGG + Chr5:68441274-68441293 MsG0580027785.01.T01:CDS 35.0%
GAAAGCTAAAGAAAAACCAG+AGG + Chr5:68441269-68441288 MsG0580027785.01.T01:CDS 35.0%
GCTAAATGCTACAAAACTGA+TGG + Chr5:68440339-68440358 MsG0580027785.01.T01:intron 35.0%
GGATGACAATGAGAACAATA+AGG - Chr5:68438849-68438868 None:intergenic 35.0%
GTCTGCTTAATCCTAAAAAC+AGG + Chr5:68441211-68441230 MsG0580027785.01.T01:CDS 35.0%
TACACTGGTAACTTCTTATG+TGG - Chr5:68438925-68438944 None:intergenic 35.0%
TGAGAAAAGCGATCTTGTTA+GGG - Chr5:68439929-68439948 None:intergenic 35.0%
TGGTTTACAGTGCTGTATAT+TGG + Chr5:68439263-68439282 MsG0580027785.01.T01:intron 35.0%
TGGTTTAGTTGTTCTACTGT+TGG + Chr5:68439365-68439384 MsG0580027785.01.T01:intron 35.0%
TTAGAACACGTGTGCAATAT+CGG - Chr5:68439876-68439895 None:intergenic 35.0%
TTCTCATACTCAACAAGAAC+TGG - Chr5:68441252-68441271 None:intergenic 35.0%
!!! GTGTTTGTTGCTGTTTTCAA+TGG + Chr5:68440906-68440925 MsG0580027785.01.T01:intron 35.0%
AAACCATATGCACAAGCCAA+TGG + Chr5:68440811-68440830 MsG0580027785.01.T01:intron 40.0%
AACACCTGTCCTTGATCTAA+TGG - Chr5:68439816-68439835 None:intergenic 40.0%
ACGAGTACAATCATCTGCAT+AGG - Chr5:68439112-68439131 None:intergenic 40.0%
ACTGGTAACTTCTTATGTGG+TGG - Chr5:68438922-68438941 None:intergenic 40.0%
ACTGTTGGAGTATGAGTGTT+AGG + Chr5:68440710-68440729 MsG0580027785.01.T01:intron 40.0%
AGAACCATTAGATCAAGGAC+AGG + Chr5:68439809-68439828 MsG0580027785.01.T01:intron 40.0%
ATCTGAGAGTGGACAATTGA+CGG + Chr5:68440945-68440964 MsG0580027785.01.T01:CDS 40.0%
CACTTCCACCTTCTTATAGT+GGG + Chr5:68438893-68438912 MsG0580027785.01.T01:CDS 40.0%
CGAGTACAATCATCTGCATA+GGG - Chr5:68439111-68439130 None:intergenic 40.0%
CTGTTGGAGTATGAGTGTTA+GGG + Chr5:68440711-68440730 MsG0580027785.01.T01:intron 40.0%
GAACAATAAGGAGCAACACT+AGG - Chr5:68438837-68438856 None:intergenic 40.0%
GAGAAGGGTGAAAATAACGT+CGG - Chr5:68440038-68440057 None:intergenic 40.0%
GAGTACAATCATCTGCATAG+GGG - Chr5:68439110-68439129 None:intergenic 40.0%
GAGTTGTACTCCAAAACCAT+TGG - Chr5:68440787-68440806 None:intergenic 40.0%
GTACAGACCTTCGATGAAAA+AGG + Chr5:68438942-68438961 MsG0580027785.01.T01:CDS 40.0%
GTGAGAAAAGCGATCTTGTT+AGG - Chr5:68439930-68439949 None:intergenic 40.0%
TTCTGAATCGCACGAATCAA+GGG - Chr5:68440075-68440094 None:intergenic 40.0%
TTGCTTATGCACCATGCATA+AGG - Chr5:68439786-68439805 None:intergenic 40.0%
TTTCTGAATCGCACGAATCA+AGG - Chr5:68440076-68440095 None:intergenic 40.0%
! CAAGGACAGGTGTTATAATC+TGG + Chr5:68439822-68439841 MsG0580027785.01.T01:intron 40.0%
! CAGGTATTGCGAGTGTAAAA+TGG + Chr5:68439291-68439310 MsG0580027785.01.T01:intron 40.0%
! TCAACTGATGGTTTGTACAC+CGG - Chr5:68438985-68439004 None:intergenic 40.0%
!! AAACCATTGGCTTGTGCATA+TGG - Chr5:68440817-68440836 None:intergenic 40.0%
!! CATAGGGGTACTTAATTTGG+TGG - Chr5:68439095-68439114 None:intergenic 40.0%
!! CTGCATAGGGGTACTTAATT+TGG - Chr5:68439098-68439117 None:intergenic 40.0%
!! TACACCGGTGATTTTTCAAC+TGG - Chr5:68438970-68438989 None:intergenic 40.0%
!! TCACATGTTGGCCTGTTTTT+AGG - Chr5:68441225-68441244 None:intergenic 40.0%
!!! TTGGCTTGTGCATATGGTTT+TGG - Chr5:68440811-68440830 None:intergenic 40.0%
AAACCATTTCCACAGGCCAA+TGG + Chr5:68440768-68440787 MsG0580027785.01.T01:intron 45.0%
AACACGTGTGCAATATCGGA+CGG - Chr5:68439872-68439891 None:intergenic 45.0%
ACATGTGGTTTCTTTACCGG+TGG - Chr5:68439027-68439046 None:intergenic 45.0%
AGAACTGGACTGTCACATGT+TGG - Chr5:68441237-68441256 None:intergenic 45.0%
CATATTGTGCAAGACCCTGA+GGG - Chr5:68438870-68438889 None:intergenic 45.0%
CCACTATAAGAAGGTGGAAG+TGG - Chr5:68438895-68438914 None:intergenic 45.0%
CCACTTCCACCTTCTTATAG+TGG + Chr5:68438892-68438911 MsG0580027785.01.T01:CDS 45.0%
CGGACATGTGGTTTCTTTAC+CGG - Chr5:68439030-68439049 None:intergenic 45.0%
CTCACCAAAACCATTTCCAC+AGG + Chr5:68440761-68440780 MsG0580027785.01.T01:intron 45.0%
CTTTACCGGTGGCTTGAAAA+CGG - Chr5:68439016-68439035 None:intergenic 45.0%
GAAAAACCAGAGGAAAGGGT+TGG + Chr5:68441279-68441298 MsG0580027785.01.T01:CDS 45.0%
GAATCAAGGGTGAATCACGT+CGG - Chr5:68440062-68440081 None:intergenic 45.0%
GAGAAACACGTCAGAGAGAA+AGG - Chr5:68440222-68440241 None:intergenic 45.0%
GAGAAAGGTGAGAATCACGT+CGG - Chr5:68440207-68440226 None:intergenic 45.0%
GCGATTCAGAAATTCATCGC+CGG + Chr5:68440121-68440140 MsG0580027785.01.T01:intron 45.0%
GGTAACTTCTTATGTGGTGG+CGG - Chr5:68438919-68438938 None:intergenic 45.0%
GGTGCCAGTTGAAAAATCAC+CGG + Chr5:68438963-68438982 MsG0580027785.01.T01:CDS 45.0%
GTGCTGTATATTGGCATGAC+AGG + Chr5:68439272-68439291 MsG0580027785.01.T01:intron 45.0%
GTTCTCATTGTCATCCCTCA+GGG + Chr5:68438853-68438872 MsG0580027785.01.T01:CDS 45.0%
TACCTCGGAGTGAATAACGT+CGG - Chr5:68440253-68440272 None:intergenic 45.0%
TATCAAGGCTTCTCAACCTG+TGG - Chr5:68439057-68439076 None:intergenic 45.0%
TGAGAACCGTGATCGTGAAA+CGG - Chr5:68439970-68439989 None:intergenic 45.0%
TGTTCTCATTGTCATCCCTC+AGG + Chr5:68438852-68438871 MsG0580027785.01.T01:CDS 45.0%
TTACAACCAACCCTTTCCTC+TGG - Chr5:68441288-68441307 None:intergenic 45.0%
TTCATCGAAGGTCTGTACAC+TGG - Chr5:68438940-68438959 None:intergenic 45.0%
! AAACCATTGGCCTGTGGAAA+TGG - Chr5:68440774-68440793 None:intergenic 45.0%
! TTCACTCCGAGGTATTTCTC+CGG + Chr5:68440259-68440278 MsG0580027785.01.T01:intron 45.0%
! TTGGCCTGTGGAAATGGTTT+TGG - Chr5:68440768-68440787 None:intergenic 45.0%
! TTTCCACAGGCCAATGGTTT+TGG + Chr5:68440774-68440793 MsG0580027785.01.T01:intron 45.0%
!! ACTGGCACCTTTTTCATCGA+AGG - Chr5:68438952-68438971 None:intergenic 45.0%
!! GAAAGGGTTGGTTGTAAAGC+TGG + Chr5:68441291-68441310 MsG0580027785.01.T01:CDS 45.0%
!! TACTTAATTTGGTGGCGACG+CGG - Chr5:68439087-68439106 None:intergenic 45.0%
!! AATTAATAATAAGAAATTTA+TGG + Chr5:68439345-68439364 MsG0580027785.01.T01:intron 5.0%
AACTCGCCGGAGAAATACCT+CGG - Chr5:68440268-68440287 None:intergenic 50.0%
CAAGTTGCAGCAGCGAGAAA+CGG - Chr5:68440161-68440180 None:intergenic 50.0%
CCATATTGTGCAAGACCCTG+AGG - Chr5:68438871-68438890 None:intergenic 50.0%
CCTCAGGGTCTTGCACAATA+TGG + Chr5:68438868-68438887 MsG0580027785.01.T01:CDS 50.0%
CGACGCGGCTTCTAATATCA+AGG - Chr5:68439072-68439091 None:intergenic 50.0%
GAGCAACACTAGGAAGCGAA+AGG - Chr5:68438827-68438846 None:intergenic 50.0%
GAGTGAATAACGTCGGAGGA+AGG - Chr5:68440246-68440265 None:intergenic 50.0%
GCTTCTCAACCTGTGGTTTG+CGG - Chr5:68439050-68439069 None:intergenic 50.0%
GTGAATCACGTCGGAGAGAA+GGG - Chr5:68440053-68440072 None:intergenic 50.0%
! ACTCCAAAACCATTGGCCTG+TGG - Chr5:68440780-68440799 None:intergenic 50.0%
AACGGTGAGAATCGAGGTGC+CGG - Chr5:68440143-68440162 None:intergenic 55.0%
ACCACATGTCCGCAAACCAC+AGG + Chr5:68439038-68439057 MsG0580027785.01.T01:CDS 55.0%
ACCGGTGGCTTGAAAACGGA+GGG - Chr5:68439012-68439031 None:intergenic 55.0%
ACGGAGGGCTTCTCAACTGA+TGG - Chr5:68438997-68439016 None:intergenic 55.0%
AGCGAGGCTGAGAATCACGT+CGG - Chr5:68440008-68440027 None:intergenic 55.0%
CACGTCGGAACGGCAAGAAA+CGG - Chr5:68439993-68440012 None:intergenic 55.0%
CACGTCGGAGAAGCGAAGAA+AGG - Chr5:68440192-68440211 None:intergenic 55.0%
CTCCGACGTTATTCACTCCG+AGG + Chr5:68440248-68440267 MsG0580027785.01.T01:intron 55.0%
CTCGGAGTGAATAACGTCGG+AGG - Chr5:68440250-68440269 None:intergenic 55.0%
GCGAGAAACGGTGAGAATCG+AGG - Chr5:68440149-68440168 None:intergenic 55.0%
GGCTGAGAATCACGTCGGAA+CGG - Chr5:68440003-68440022 None:intergenic 55.0%
GGTGAATCACGTCGGAGAGA+AGG - Chr5:68440054-68440073 None:intergenic 55.0%
TACCGGTGGCTTGAAAACGG+AGG - Chr5:68439013-68439032 None:intergenic 55.0%
! ACCTGTGGTTTGCGGACATG+TGG - Chr5:68439042-68439061 None:intergenic 55.0%
CCGACGCCGTTTCACGATCA+CGG + Chr5:68439961-68439980 MsG0580027785.01.T01:intron 60.0%
CCGTGATCGTGAAACGGCGT+CGG - Chr5:68439964-68439983 None:intergenic 60.0%
GGCGGCCCACTATAAGAAGG+TGG - Chr5:68438901-68438920 None:intergenic 60.0%
TAACGTCGGAGAAGCGAGCG+AGG - Chr5:68440024-68440043 None:intergenic 60.0%
! GGTGGCGGCCCACTATAAGA+AGG - Chr5:68438904-68438923 None:intergenic 60.0%
!! GCCCTCCGTTTTCAAGCCAC+CGG + Chr5:68439008-68439027 MsG0580027785.01.T01:CDS 60.0%
!! AACGGCGTCGGCGACGGAAA+CGG - Chr5:68439952-68439971 None:intergenic 65.0%
!! TCGTGAAACGGCGTCGGCGA+CGG - Chr5:68439958-68439977 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 68438817 68441341 68438817 ID=MsG0580027785.01;Name=MsG0580027785.01
Chr5 mRNA 68438817 68441341 68438817 ID=MsG0580027785.01.T01;Parent=MsG0580027785.01;Name=MsG0580027785.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|225
Chr5 exon 68438817 68439059 68438817 ID=MsG0580027785.01.T01:exon:14350;Parent=MsG0580027785.01.T01
Chr5 exon 68440907 68441341 68440907 ID=MsG0580027785.01.T01:exon:14351;Parent=MsG0580027785.01.T01
Chr5 CDS 68438817 68439059 68438817 ID=MsG0580027785.01.T01:cds;Parent=MsG0580027785.01.T01
Chr5 CDS 68440907 68441341 68440907 ID=MsG0580027785.01.T01:cds;Parent=MsG0580027785.01.T01
Gene Sequence

>MsG0580027785.01.T01

ATGGCTTCCTTTCGCTTCCTAGTGTTGCTCCTTATTGTTCTCATTGTCATCCCTCAGGGTCTTGCACAATATGGACCACTTCCACCTTCTTATAGTGGGCCGCCACCACATAAGAAGTTACCAGTGTACAGACCTTCGATGAAAAAGGTGCCAGTTGAAAAATCACCGGTGTACAAACCATCAGTTGAGAAGCCCTCCGTTTTCAAGCCACCGGTAAAGAAACCACATGTCCGCAAACCACAGTGTTTGTTGCTGTTTTCAATGGATTTGATATCAACTTCATCTGAGAGTGGACAATTGACGGTTGAAAATTCAGTTATTGATGCGGATAGTTCTCAATGTTACTCCTTTAGTGATAAAGAATCATGGAAGTCTTTGGTCTTTAAATCTATAAAAGAGATTGAAGATTTTTATTTTAATTATGCATATAACACTGGATTCTCTGTTAGGAGTATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGGATAAGGTACATTATGTGTGTTATGCTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAACGTTGA
Protein sequence

>MsG0580027785.01.T01

MASFRFLVLLLIVLIVIPQGLAQYGPLPPSYSGPPPHKKLPVYRPSMKKVPVEKSPVYKPSVEKPSVFKPPVKKPHVRKPQCLLLFSMDLISTSSESGQLTVENSVIDADSSQCYSFSDKESWKSLVFKSIKEIEDFYFNYAYNTGFSVRSMLKSKNNSQNKKSDKVHYVCYACNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDER*