AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017227.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017227.01.T01 MTR_3g103300 97.105 449 13 0 1 449 1 449 0.0 899
MsG0380017227.01.T01 MTR_2g075650 95.918 49 2 0 175 223 25 73 2.29e-24 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017227.01.T01 AT1G27480 59.059 425 164 4 10 431 4 421 0.0 518

Find 102 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTAGGTCGTTTAGGAATT+TGG 0.093532 3:-93804577 None:intergenic
AAAATGGATGGTTTAGATTA+TGG 0.209097 3:+93802919 MsG0380017227.01.T01:CDS
AAAATTAAATTTGCAGATAA+TGG 0.219301 3:-93805434 None:intergenic
AAGAAGAAGGGTTTCGATTA+AGG 0.254545 3:-93804689 None:intergenic
GTTGCACTTGATGAAATAAT+TGG 0.291740 3:+93805275 MsG0380017227.01.T01:CDS
TTAATCGAAACCCTTCTTCT+TGG 0.309291 3:+93804691 MsG0380017227.01.T01:CDS
TCAAATTCTTTAGGTCGTTT+AGG 0.309491 3:-93804584 None:intergenic
TTATCAATATCAAACATCTT+AGG 0.316150 3:-93804885 None:intergenic
TGTTGGCACTTGAATCTCTA+TGG 0.323866 3:+93805177 MsG0380017227.01.T01:CDS
TTTGCATCAGGCAATACTTT+GGG 0.325360 3:+93804786 MsG0380017227.01.T01:CDS
CTTTGTTTCTAGTGAAGCTT+TGG 0.328266 3:-93802643 None:intergenic
CTCATGCTCAACTTGATTTG+AGG 0.335869 3:+93805318 MsG0380017227.01.T01:CDS
TCATAAGGATAAACCCCTTC+AGG 0.343915 3:-93804981 None:intergenic
ATACCATGGATCACAAATTA+AGG 0.343972 3:-93802880 None:intergenic
GTGGCTATGACTTGTATTAT+AGG 0.349728 3:+93805047 MsG0380017227.01.T01:CDS
TGCGCTGAATAGCTTCTATA+TGG 0.355751 3:-93804924 None:intergenic
CTGTGTGAGACAAGTATTAC+TGG 0.360336 3:-93804639 None:intergenic
GGTAGAAGGTTTATATTTAG+TGG 0.367636 3:-93802859 None:intergenic
GGATCACAAATTAAGGTAGA+AGG 0.371811 3:-93802873 None:intergenic
GTTGTTGTTGCTTGTGCTAA+TGG 0.373911 3:-93802778 None:intergenic
AAGCTATTCAGCGCATGATA+TGG 0.395729 3:+93804932 MsG0380017227.01.T01:CDS
GAACAGCTTGGTTACATAGA+TGG 0.397233 3:+93804480 MsG0380017227.01.T01:CDS
TAGACCATATCGAAAATCAT+AGG 0.397497 3:-93804523 None:intergenic
TACTTGAAAGTTATTAAGAT+TGG 0.398069 3:+93805218 MsG0380017227.01.T01:CDS
ATAGATGGTGAAAATCTGTT+TGG 0.403610 3:+93804495 MsG0380017227.01.T01:CDS
TTATAGCACTTTCTGCTCCA+TGG 0.410868 3:+93804736 MsG0380017227.01.T01:CDS
ATATCAAACATCTTAGGATT+AGG 0.419667 3:-93804879 None:intergenic
CTACCTTAATTTGTGATCCA+TGG 0.426147 3:+93802877 MsG0380017227.01.T01:CDS
ACTAGCAAAGGGTTTACTAA+TGG 0.433212 3:-93804813 None:intergenic
GAGACACGTGTCCCTAGCTT+TGG 0.437492 3:+93803047 MsG0380017227.01.T01:CDS
TATAGCACTTTCTGCTCCAT+GGG 0.439917 3:+93804737 MsG0380017227.01.T01:CDS
TATTACTGGCTTCCCTCCAT+TGG 0.440820 3:-93804625 None:intergenic
CTGTTCTAATGATTCTACTA+AGG 0.448413 3:-93804463 None:intergenic
GGTAAAATGCGAGTTTCATA+AGG 0.448911 3:-93804996 None:intergenic
AGTTGGTTCCCTCCATTACC+TGG 0.449098 3:-93802822 None:intergenic
TTCCTATAAAACAATTCCTC+TGG 0.453117 3:-93805086 None:intergenic
AATTTCTTGCGCCAAGAAGA+AGG 0.455307 3:-93804702 None:intergenic
GTTCATTTCTTACTAGCAAA+GGG 0.458490 3:-93804824 None:intergenic
TTACCTGGTATTAGTATCAC+TGG 0.464879 3:-93802807 None:intergenic
CATACGAGAAGCAAAACATT+TGG 0.473192 3:-93802973 None:intergenic
ATACAAGTCATAGCCACTTC+CGG 0.477044 3:-93805041 None:intergenic
TGAAAGTTATTAAGATTGGT+GGG 0.480822 3:+93805222 MsG0380017227.01.T01:CDS
TGTTCATTTCTTACTAGCAA+AGG 0.481119 3:-93804825 None:intergenic
GAAAATAGATGCACCGGAAG+TGG 0.484086 3:+93805028 MsG0380017227.01.T01:CDS
TTGAAAGTTATTAAGATTGG+TGG 0.484679 3:+93805221 MsG0380017227.01.T01:CDS
TACTTGTGTAGGCTTGTCAC+AGG 0.491877 3:+93804429 MsG0380017227.01.T01:intron
ATACTTGTCTCACACAGCTT+GGG 0.495176 3:+93804645 MsG0380017227.01.T01:CDS
AATACTTGTCTCACACAGCT+TGG 0.497555 3:+93804644 MsG0380017227.01.T01:CDS
GAGGAAGTAGAACCAAAGCT+AGG 0.502927 3:-93803059 None:intergenic
GTAGAATCATTAGAACAGCT+TGG 0.503633 3:+93804468 MsG0380017227.01.T01:CDS
GTGATACTAATACCAGGTAA+TGG 0.511981 3:+93802810 MsG0380017227.01.T01:CDS
AATTTGGAACCAACTTGAGA+TGG 0.518350 3:-93804561 None:intergenic
TGTGAACATGGTGAGCTTGT+TGG 0.520209 3:+93805160 MsG0380017227.01.T01:CDS
CCATCACCATAAGAAAACTC+TGG 0.520727 3:-93805128 None:intergenic
CTACAATTTCAAAACATCAA+TGG 0.521982 3:-93805537 None:intergenic
TTGCATCAGGCAATACTTTG+GGG 0.522896 3:+93804787 MsG0380017227.01.T01:CDS
CGATATGGTCTAGCTGCACC+AGG 0.525375 3:+93804534 MsG0380017227.01.T01:CDS
GGTTTCGATTAAGGAGTTCG+AGG 0.526959 3:-93804680 None:intergenic
ATGACTTGTATTATAGGAAA+GGG 0.529339 3:+93805053 MsG0380017227.01.T01:CDS
GGGACACGTGTCTCCACTCC+AGG 0.536426 3:-93803038 None:intergenic
CATCACCATAAGAAAACTCT+GGG 0.540159 3:-93805127 None:intergenic
TTCTTGAAAGGAGGATACCA+TGG 0.540741 3:-93802894 None:intergenic
CACTAACAGTGTTAATGTGT+TGG 0.541443 3:-93802724 None:intergenic
GTATTAGTATCACTGGATTG+AGG 0.543116 3:-93802800 None:intergenic
ATTTGGAACCAACTTGAGAT+GGG 0.545508 3:-93804560 None:intergenic
TATGACTTGTATTATAGGAA+AGG 0.546133 3:+93805052 MsG0380017227.01.T01:CDS
TAGGATTAGGCAAAAGCCAT+AGG 0.550005 3:-93804866 None:intergenic
TAGGCTTGTCACAGGGTACA+TGG 0.553390 3:+93804437 MsG0380017227.01.T01:intron
TCATCAACAGTTCCACCCCA+TGG 0.553701 3:-93804753 None:intergenic
GATAGCGAAAATAGATGCAC+CGG 0.558129 3:+93805022 MsG0380017227.01.T01:CDS
CTTGTCTCACACAGCTTGGG+AGG 0.564047 3:+93804648 MsG0380017227.01.T01:CDS
GAAAGTTATTAAGATTGGTG+GGG 0.564534 3:+93805223 MsG0380017227.01.T01:CDS
GAAGCAAAACATTTGGTGAA+AGG 0.565167 3:-93802966 None:intergenic
AAAGCTAGTACTTGATGCGA+TGG 0.565432 3:+93805401 MsG0380017227.01.T01:three_prime_UTR
TGTTCTAATGATTCTACTAA+GGG 0.567395 3:-93804462 None:intergenic
TGCATCAGGCAATACTTTGG+GGG 0.570619 3:+93804788 MsG0380017227.01.T01:CDS
GCACTTTCTGCTCCATGGGG+TGG 0.574507 3:+93804741 MsG0380017227.01.T01:CDS
ATTTCTTGCGCCAAGAAGAA+GGG 0.574514 3:-93804701 None:intergenic
AGGAAGTAGAACCAAAGCTA+GGG 0.574724 3:-93803058 None:intergenic
AGACCATATCGAAAATCATA+GGG 0.574772 3:-93804522 None:intergenic
GCTTGTGCTAATGGCAACAT+TGG 0.575689 3:-93802769 None:intergenic
AGGATTAAGATAAAGAAGAG+AGG 0.580569 3:-93803078 None:intergenic
CACATTAACACTGTTAGTGA+TGG 0.588711 3:+93802728 MsG0380017227.01.T01:CDS
GAACTTCTGAGAGTAACCTA+TGG 0.593616 3:+93804850 MsG0380017227.01.T01:CDS
CCAACTTGAGATGGGTGACC+TGG 0.599702 3:-93804552 None:intergenic
ATACTAATACCAGGTAATGG+AGG 0.600946 3:+93802813 MsG0380017227.01.T01:CDS
AAAGCAAGCAATTCCAATGG+AGG 0.603247 3:+93804612 MsG0380017227.01.T01:CDS
AAAGGAGCAAGTAAGACACT+TGG 0.604685 3:-93802948 None:intergenic
CCAGGTCACCCATCTCAAGT+TGG 0.608401 3:+93804552 MsG0380017227.01.T01:CDS
TGGTGACGGAACTGTGAACA+TGG 0.612065 3:+93805148 MsG0380017227.01.T01:CDS
ACTTGTGTAGGCTTGTCACA+GGG 0.624634 3:+93804430 MsG0380017227.01.T01:intron
AAGCAAGCAATTCCAATGGA+GGG 0.626020 3:+93804613 MsG0380017227.01.T01:CDS
TACTAATACCAGGTAATGGA+GGG 0.631997 3:+93802814 MsG0380017227.01.T01:CDS
TGTTTCGTTTCACTCAAACA+TGG 0.636137 3:-93802616 None:intergenic
ATAGCACTTTCTGCTCCATG+GGG 0.637994 3:+93804738 MsG0380017227.01.T01:CDS
AAGGAGCAAGTAAGACACTT+GGG 0.639202 3:-93802947 None:intergenic
AATCCAGTGATACTAATACC+AGG 0.663374 3:+93802804 MsG0380017227.01.T01:CDS
AAATAAACTTACTTAAGACG+AGG 0.677738 3:-93803098 None:intergenic
TCACCATAAGAAAACTCTGG+GGG 0.705714 3:-93805125 None:intergenic
CATTTGATGAGAAATGATCG+TGG 0.720069 3:+93805357 MsG0380017227.01.T01:exon
AAAGGGTGTGAAGACTCCAG+AGG 0.728760 3:+93805070 MsG0380017227.01.T01:CDS
ATCACCATAAGAAAACTCTG+GGG 0.774332 3:-93805126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAAAAATATATAATTAC+TGG - Chr3:93802670-93802689 None:intergenic 10.0%
!! TTATCTTTCAATTATTATAT+GGG + Chr3:93804001-93804020 MsG0380017227.01.T01:intron 10.0%
!! TTCTATAAAAAGTTATTATA+TGG + Chr3:93804382-93804401 MsG0380017227.01.T01:intron 10.0%
!! TTTATCTTTCAATTATTATA+TGG + Chr3:93804000-93804019 MsG0380017227.01.T01:intron 10.0%
!! AAAATTAAATTTGCAGATAA+TGG - Chr3:93805437-93805456 None:intergenic 15.0%
!! AATTGAATGAATCTAAAAAT+TGG - Chr3:93803241-93803260 None:intergenic 15.0%
!!! TAAGCAAAAATCTATTTTTT+AGG - Chr3:93803316-93803335 None:intergenic 15.0%
!!! TGACATTTTATTATTGATAT+AGG + Chr3:93805473-93805492 MsG0380017227.01.T01:three_prime_UTR 15.0%
!! AACATTACTGTATTATTGTA+AGG - Chr3:93804410-93804429 None:intergenic 20.0%
!! AGGAAATCAAACAAAATTTA+AGG - Chr3:93803141-93803160 None:intergenic 20.0%
!! ATGAATGTAGTCTTTATTAT+AGG + Chr3:93803265-93803284 MsG0380017227.01.T01:intron 20.0%
!! ATTAAAGTTTCACTAAATCA+AGG - Chr3:93803404-93803423 None:intergenic 20.0%
!! TACTTGAAAGTTATTAAGAT+TGG + Chr3:93805218-93805237 MsG0380017227.01.T01:CDS 20.0%
!! TTATCAATATCAAACATCTT+AGG - Chr3:93804888-93804907 None:intergenic 20.0%
!! TTTACATCTATATAAAGCTA+CGG + Chr3:93804238-93804257 MsG0380017227.01.T01:intron 20.0%
!!! AAAAGTGTCTTTTTTTTCTT+TGG - Chr3:93804220-93804239 None:intergenic 20.0%
!!! ATTCATGTTAGTCTTTTTTT+AGG + Chr3:93803580-93803599 MsG0380017227.01.T01:intron 20.0%
!!! CTTTTTCTATCAAATTCTTT+AGG - Chr3:93804596-93804615 None:intergenic 20.0%
!!! GTTGATTTTCTTAAAGATAT+TGG + Chr3:93804954-93804973 MsG0380017227.01.T01:CDS 20.0%
!!! TATATTTTTTATCGTGATGA+AGG + Chr3:93802677-93802696 MsG0380017227.01.T01:exon 20.0%
!!! TCAATTTTTTTTGTGTTAAC+CGG - Chr3:93803808-93803827 None:intergenic 20.0%
!!! TGAGTTTTGATATTAAGAAT+GGG + Chr3:93805560-93805579 MsG0380017227.01.T01:three_prime_UTR 20.0%
! AAAAGATTTAACATTGCTCA+TGG - Chr3:93803714-93803733 None:intergenic 25.0%
! AAAATGGATGGTTTAGATTA+TGG + Chr3:93802919-93802938 MsG0380017227.01.T01:CDS 25.0%
! AAATAAACTTACTTAAGACG+AGG - Chr3:93803101-93803120 None:intergenic 25.0%
! ATATCAAACATCTTAGGATT+AGG - Chr3:93804882-93804901 None:intergenic 25.0%
! ATATTATCAAATTAGTCCGA+AGG - Chr3:93803618-93803637 None:intergenic 25.0%
! CTACAATTTCAAAACATCAA+TGG - Chr3:93805540-93805559 None:intergenic 25.0%
! CTTTCAATTATTATATGGGA+AGG + Chr3:93804005-93804024 MsG0380017227.01.T01:intron 25.0%
! GACGAGAAATTATAAATTGT+TGG - Chr3:93803871-93803890 None:intergenic 25.0%
! GTGCATTAAAAAAATCATCA+AGG - Chr3:93803019-93803038 None:intergenic 25.0%
! TGAAAGTTATTAAGATTGGT+GGG + Chr3:93805222-93805241 MsG0380017227.01.T01:CDS 25.0%
! TGTTCTAATGATTCTACTAA+GGG - Chr3:93804465-93804484 None:intergenic 25.0%
! TTGAAAGTTATTAAGATTGG+TGG + Chr3:93805221-93805240 MsG0380017227.01.T01:CDS 25.0%
!! ATGACTTGTATTATAGGAAA+GGG + Chr3:93805053-93805072 MsG0380017227.01.T01:CDS 25.0%
!! ATGAGCAATGTTAAATCTTT+TGG + Chr3:93803713-93803732 MsG0380017227.01.T01:intron 25.0%
!! CTTTTCTAGATAGATTGAAT+CGG + Chr3:93804070-93804089 MsG0380017227.01.T01:intron 25.0%
!! TATGACTTGTATTATAGGAA+AGG + Chr3:93805052-93805071 MsG0380017227.01.T01:CDS 25.0%
!! TGAGCAATGTTAAATCTTTT+GGG + Chr3:93803714-93803733 MsG0380017227.01.T01:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG + Chr3:93803326-93803345 MsG0380017227.01.T01:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG - Chr3:93803345-93803326 None:intergenic 25.0%
!!! ATCTAGAAAAGTGTTCATAT+AGG - Chr3:93804061-93804080 None:intergenic 25.0%
!!! CAATTTTTTTTGTGTTAACC+GGG - Chr3:93803807-93803826 None:intergenic 25.0%
!!! GTGAGTTTTGATATTAAGAA+TGG + Chr3:93805559-93805578 MsG0380017227.01.T01:three_prime_UTR 25.0%
AAACTTCCAAAACAAAGTAC+AGG - Chr3:93803161-93803180 None:intergenic 30.0%
AGACCATATCGAAAATCATA+GGG - Chr3:93804525-93804544 None:intergenic 30.0%
AGGATTAAGATAAAGAAGAG+AGG - Chr3:93803081-93803100 None:intergenic 30.0%
ATAATAACTAGAGCTCATGA+TGG - Chr3:93803487-93803506 None:intergenic 30.0%
ATACCATGGATCACAAATTA+AGG - Chr3:93802883-93802902 None:intergenic 30.0%
ATAGATGGTGAAAATCTGTT+TGG + Chr3:93804495-93804514 MsG0380017227.01.T01:CDS 30.0%
CTGTTCTAATGATTCTACTA+AGG - Chr3:93804466-93804485 None:intergenic 30.0%
CTTTCAAGAAGAAAAATGGA+TGG + Chr3:93802907-93802926 MsG0380017227.01.T01:CDS 30.0%
GAAAGTTATTAAGATTGGTG+GGG + Chr3:93805223-93805242 MsG0380017227.01.T01:CDS 30.0%
GGTAGAAGGTTTATATTTAG+TGG - Chr3:93802862-93802881 None:intergenic 30.0%
GTTAGAACCTTGAAATTGTA+GGG - Chr3:93803927-93803946 None:intergenic 30.0%
GTTCATTTCTTACTAGCAAA+GGG - Chr3:93804827-93804846 None:intergenic 30.0%
GTTGCACTTGATGAAATAAT+TGG + Chr3:93805275-93805294 MsG0380017227.01.T01:CDS 30.0%
TAATTTCTCGTCAATTTCGT+AGG + Chr3:93803879-93803898 MsG0380017227.01.T01:intron 30.0%
TAGACCATATCGAAAATCAT+AGG - Chr3:93804526-93804545 None:intergenic 30.0%
TCAAATTCTTTAGGTCGTTT+AGG - Chr3:93804587-93804606 None:intergenic 30.0%
TGCTAAAAGACTATACTGTT+TGG + Chr3:93803835-93803854 MsG0380017227.01.T01:intron 30.0%
TGTTCATTTCTTACTAGCAA+AGG - Chr3:93804828-93804847 None:intergenic 30.0%
TTAGAACCTTGAAATTGTAG+GGG - Chr3:93803926-93803945 None:intergenic 30.0%
TTCCTATAAAACAATTCCTC+TGG - Chr3:93805089-93805108 None:intergenic 30.0%
! AGCAATGTTAAATCTTTTGG+GGG + Chr3:93803716-93803735 MsG0380017227.01.T01:intron 30.0%
! GAGCAATGTTAAATCTTTTG+GGG + Chr3:93803715-93803734 MsG0380017227.01.T01:intron 30.0%
! TACAGTAATGTTACTTGTGT+AGG + Chr3:93804418-93804437 MsG0380017227.01.T01:intron 30.0%
!! CATCCATTTTTCTTCTTGAA+AGG - Chr3:93802909-93802928 None:intergenic 30.0%
!! GAAATGTTTACTTTTGCATC+AGG + Chr3:93804774-93804793 MsG0380017227.01.T01:CDS 30.0%
!! GAGGAATTGTTTTATAGGAA+TGG + Chr3:93805089-93805108 MsG0380017227.01.T01:CDS 30.0%
!! TGATTTCCTGTACTTTGTTT+TGG + Chr3:93803152-93803171 MsG0380017227.01.T01:intron 30.0%
!!! AAAGATATTGGTTTTCCTGA+AGG + Chr3:93804966-93804985 MsG0380017227.01.T01:CDS 30.0%
!!! AAGATATTGGTTTTCCTGAA+GGG + Chr3:93804967-93804986 MsG0380017227.01.T01:CDS 30.0%
!!! AGTGTCTTTTTTTTCTTTGG+TGG - Chr3:93804217-93804236 None:intergenic 30.0%
!!! GATGATTTTTTTAATGCACC+TGG + Chr3:93803020-93803039 MsG0380017227.01.T01:CDS 30.0%
AAGAAGAAGGGTTTCGATTA+AGG - Chr3:93804692-93804711 None:intergenic 35.0%
AATCCAGTGATACTAATACC+AGG + Chr3:93802804-93802823 MsG0380017227.01.T01:CDS 35.0%
AATTAACAAACTACACCCTC+CGG + Chr3:93803195-93803214 MsG0380017227.01.T01:intron 35.0%
ACAATACCCCTACAATTTCA+AGG + Chr3:93803917-93803936 MsG0380017227.01.T01:intron 35.0%
ACTAGCAAAGGGTTTACTAA+TGG - Chr3:93804816-93804835 None:intergenic 35.0%
AGATCATCCAATTTGGTTGT+GGG + Chr3:93803371-93803390 MsG0380017227.01.T01:intron 35.0%
ATCACCATAAGAAAACTCTG+GGG - Chr3:93805129-93805148 None:intergenic 35.0%
ATTAATCAGTGTTCTCATGG+CGG + Chr3:93804328-93804347 MsG0380017227.01.T01:intron 35.0%
CACATTAACACTGTTAGTGA+TGG + Chr3:93802728-93802747 MsG0380017227.01.T01:CDS 35.0%
CACTAACAGTGTTAATGTGT+TGG - Chr3:93802727-93802746 None:intergenic 35.0%
CATACGAGAAGCAAAACATT+TGG - Chr3:93802976-93802995 None:intergenic 35.0%
CATCACCATAAGAAAACTCT+GGG - Chr3:93805130-93805149 None:intergenic 35.0%
CATTTGATGAGAAATGATCG+TGG + Chr3:93805357-93805376 MsG0380017227.01.T01:exon 35.0%
CCTCCTTTCAAGAAGAAAAA+TGG + Chr3:93802903-93802922 MsG0380017227.01.T01:CDS 35.0%
CTCTATGAGATCATCCAATT+TGG + Chr3:93803364-93803383 MsG0380017227.01.T01:intron 35.0%
CTTTAGGTCGTTTAGGAATT+TGG - Chr3:93804580-93804599 None:intergenic 35.0%
GAAAAAGCAAGCAATTCCAA+TGG + Chr3:93804609-93804628 MsG0380017227.01.T01:CDS 35.0%
GACAGTGCATAAAATATGCA+AGG + Chr3:93804176-93804195 MsG0380017227.01.T01:intron 35.0%
GGATCACAAATTAAGGTAGA+AGG - Chr3:93802876-93802895 None:intergenic 35.0%
GGTAAAATGCGAGTTTCATA+AGG - Chr3:93804999-93805018 None:intergenic 35.0%
GGTTAGAACCTTGAAATTGT+AGG - Chr3:93803928-93803947 None:intergenic 35.0%
GTAGAATCATTAGAACAGCT+TGG + Chr3:93804468-93804487 MsG0380017227.01.T01:CDS 35.0%
GTATTAGTATCACTGGATTG+AGG - Chr3:93802803-93802822 None:intergenic 35.0%
GTGATACTAATACCAGGTAA+TGG + Chr3:93802810-93802829 MsG0380017227.01.T01:CDS 35.0%
GTTTCACTAAATCAAGGACT+TGG - Chr3:93803398-93803417 None:intergenic 35.0%
TGCATTAATCAGTGTTCTCA+TGG + Chr3:93804325-93804344 MsG0380017227.01.T01:intron 35.0%
TGTTTCGTTTCACTCAAACA+TGG - Chr3:93802619-93802638 None:intergenic 35.0%
TTAATCGAAACCCTTCTTCT+TGG + Chr3:93804691-93804710 MsG0380017227.01.T01:CDS 35.0%
TTACCTGGTATTAGTATCAC+TGG - Chr3:93802810-93802829 None:intergenic 35.0%
TTATCAATGAGTGTATCACC+AGG - Chr3:93803949-93803968 None:intergenic 35.0%
TTTGCATCAGGCAATACTTT+GGG + Chr3:93804786-93804805 MsG0380017227.01.T01:CDS 35.0%
! AATTTGGAACCAACTTGAGA+TGG - Chr3:93804564-93804583 None:intergenic 35.0%
! ACAATTTCAAGGTTCTAACC+TGG + Chr3:93803928-93803947 MsG0380017227.01.T01:intron 35.0%
! ATACTAATACCAGGTAATGG+AGG + Chr3:93802813-93802832 MsG0380017227.01.T01:CDS 35.0%
! ATTTGGAACCAACTTGAGAT+GGG - Chr3:93804563-93804582 None:intergenic 35.0%
! GAAGCAAAACATTTGGTGAA+AGG - Chr3:93802969-93802988 None:intergenic 35.0%
! GCATCTATTTTCGCTATCAA+AGG - Chr3:93805020-93805039 None:intergenic 35.0%
! GTGGCTATGACTTGTATTAT+AGG + Chr3:93805047-93805066 MsG0380017227.01.T01:CDS 35.0%
! TTTTGCATCAGGCAATACTT+TGG + Chr3:93804785-93804804 MsG0380017227.01.T01:CDS 35.0%
!! CCATTTTTCTTCTTGAAAGG+AGG - Chr3:93802906-93802925 None:intergenic 35.0%
!! CTACCTTAATTTGTGATCCA+TGG + Chr3:93802877-93802896 MsG0380017227.01.T01:CDS 35.0%
!! CTCCAGAGGAATTGTTTTAT+AGG + Chr3:93805084-93805103 MsG0380017227.01.T01:CDS 35.0%
!! CTTTGTTTCTAGTGAAGCTT+TGG - Chr3:93802646-93802665 None:intergenic 35.0%
!! TACTAATACCAGGTAATGGA+GGG + Chr3:93802814-93802833 MsG0380017227.01.T01:CDS 35.0%
!!! AGATATTGGTTTTCCTGAAG+GGG + Chr3:93804968-93804987 MsG0380017227.01.T01:CDS 35.0%
!!! GTCTTTTTTTTCTTTGGTGG+TGG - Chr3:93804214-93804233 None:intergenic 35.0%
!!! TAGGCTAAGTTTTTAGCCTT+CGG + Chr3:93803599-93803618 MsG0380017227.01.T01:intron 35.0%
!!! TGGTTAGTTTTGCTTCTAGT+TGG - Chr3:93802842-93802861 None:intergenic 35.0%
!!! TTTTCTTATGGTGATGGTGA+CGG + Chr3:93805134-93805153 MsG0380017227.01.T01:CDS 35.0%
!!! TTTTTTTAATGCACCTGGAG+TGG + Chr3:93803025-93803044 MsG0380017227.01.T01:CDS 35.0%
AAAGCAAGCAATTCCAATGG+AGG + Chr3:93804612-93804631 MsG0380017227.01.T01:CDS 40.0%
AAAGCTAGTACTTGATGCGA+TGG + Chr3:93805401-93805420 MsG0380017227.01.T01:three_prime_UTR 40.0%
AAAGGAGCAAGTAAGACACT+TGG - Chr3:93802951-93802970 None:intergenic 40.0%
AAGCAAGCAATTCCAATGGA+GGG + Chr3:93804613-93804632 MsG0380017227.01.T01:CDS 40.0%
AAGCTATTCAGCGCATGATA+TGG + Chr3:93804932-93804951 MsG0380017227.01.T01:CDS 40.0%
AAGGAGCAAGTAAGACACTT+GGG - Chr3:93802950-93802969 None:intergenic 40.0%
AATACTTGTCTCACACAGCT+TGG + Chr3:93804644-93804663 MsG0380017227.01.T01:CDS 40.0%
AATTTCTTGCGCCAAGAAGA+AGG - Chr3:93804705-93804724 None:intergenic 40.0%
AGGAAGTAGAACCAAAGCTA+GGG - Chr3:93803061-93803080 None:intergenic 40.0%
ATACAAGTCATAGCCACTTC+CGG - Chr3:93805044-93805063 None:intergenic 40.0%
ATACTTGTCTCACACAGCTT+GGG + Chr3:93804645-93804664 MsG0380017227.01.T01:CDS 40.0%
ATTTCTTGCGCCAAGAAGAA+GGG - Chr3:93804704-93804723 None:intergenic 40.0%
CCATCACCATAAGAAAACTC+TGG - Chr3:93805131-93805150 None:intergenic 40.0%
CGATCGAATTGACAAACTCA+CGG - Chr3:93803447-93803466 None:intergenic 40.0%
CTGTGTGAGACAAGTATTAC+TGG - Chr3:93804642-93804661 None:intergenic 40.0%
GAACAGCTTGGTTACATAGA+TGG + Chr3:93804480-93804499 MsG0380017227.01.T01:CDS 40.0%
GAGATCATCCAATTTGGTTG+TGG + Chr3:93803370-93803389 MsG0380017227.01.T01:intron 40.0%
GATAGCGAAAATAGATGCAC+CGG + Chr3:93805022-93805041 MsG0380017227.01.T01:CDS 40.0%
TACAAAGACTAATCCCTCGA+AGG - Chr3:93803765-93803784 None:intergenic 40.0%
TAGATTCGAACCAGGATCTT+TGG - Chr3:93803690-93803709 None:intergenic 40.0%
TAGGATTAGGCAAAAGCCAT+AGG - Chr3:93804869-93804888 None:intergenic 40.0%
TATAGCACTTTCTGCTCCAT+GGG + Chr3:93804737-93804756 MsG0380017227.01.T01:CDS 40.0%
TCACCATAAGAAAACTCTGG+GGG - Chr3:93805128-93805147 None:intergenic 40.0%
TCATAAGGATAAACCCCTTC+AGG - Chr3:93804984-93805003 None:intergenic 40.0%
TGCGCTGAATAGCTTCTATA+TGG - Chr3:93804927-93804946 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+GGG + Chr3:93803330-93803349 MsG0380017227.01.T01:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - Chr3:93803349-93803330 None:intergenic 40.0%
TGGGAAGGAATATAATGCAG+TGG + Chr3:93804020-93804039 MsG0380017227.01.T01:intron 40.0%
TGTTGGCACTTGAATCTCTA+TGG + Chr3:93805177-93805196 MsG0380017227.01.T01:CDS 40.0%
TTATAGCACTTTCTGCTCCA+TGG + Chr3:93804736-93804755 MsG0380017227.01.T01:CDS 40.0%
TTCAGCTTAACCAAAGATCC+TGG + Chr3:93803677-93803696 MsG0380017227.01.T01:intron 40.0%
TTCTTGAAAGGAGGATACCA+TGG - Chr3:93802897-93802916 None:intergenic 40.0%
TTGCATCAGGCAATACTTTG+GGG + Chr3:93804787-93804806 MsG0380017227.01.T01:CDS 40.0%
TTGCTTATATTAGTGACCGG+AGG + Chr3:93803329-93803348 MsG0380017227.01.T01:intron 40.0%
TTGCTTATATTAGTGACCGG+AGG - Chr3:93803348-93803329 None:intergenic 40.0%
! AGAGCTCATGATGGAAAGTT+TGG - Chr3:93803478-93803497 None:intergenic 40.0%
! CCAGAGTTTTCTTATGGTGA+TGG + Chr3:93805128-93805147 MsG0380017227.01.T01:CDS 40.0%
! CTCATGCTCAACTTGATTTG+AGG + Chr3:93805318-93805337 MsG0380017227.01.T01:CDS 40.0%
! GAACTTCTGAGAGTAACCTA+TGG + Chr3:93804850-93804869 MsG0380017227.01.T01:CDS 40.0%
! GCTCCCTATGATTTTCGATA+TGG + Chr3:93804519-93804538 MsG0380017227.01.T01:CDS 40.0%
! GTTGTTGTTGCTTGTGCTAA+TGG - Chr3:93802781-93802800 None:intergenic 40.0%
!! TTCTCATGGCGGACAAAATA+GGG + Chr3:93804339-93804358 MsG0380017227.01.T01:intron 40.0%
!!! TTTTTTTCTTTGGTGGTGGC+CGG - Chr3:93804210-93804229 None:intergenic 40.0%
AATATGCAAGGTTCGAACCC+CGG + Chr3:93804188-93804207 MsG0380017227.01.T01:intron 45.0%
ACTTGGTCCCACAACCAAAT+TGG - Chr3:93803381-93803400 None:intergenic 45.0%
ACTTGTGTAGGCTTGTCACA+GGG + Chr3:93804430-93804449 MsG0380017227.01.T01:intron 45.0%
ATAGCACTTTCTGCTCCATG+GGG + Chr3:93804738-93804757 MsG0380017227.01.T01:CDS 45.0%
CTTTGTATAGTTGCGTGCAG+AGG + Chr3:93803778-93803797 MsG0380017227.01.T01:intron 45.0%
GAAAATAGATGCACCGGAAG+TGG + Chr3:93805028-93805047 MsG0380017227.01.T01:CDS 45.0%
GAGGAAGTAGAACCAAAGCT+AGG - Chr3:93803062-93803081 None:intergenic 45.0%
GCTTGTGCTAATGGCAACAT+TGG - Chr3:93802772-93802791 None:intergenic 45.0%
GGTTTCGATTAAGGAGTTCG+AGG - Chr3:93804683-93804702 None:intergenic 45.0%
TACTTGTGTAGGCTTGTCAC+AGG + Chr3:93804429-93804448 MsG0380017227.01.T01:intron 45.0%
TGCATCAGGCAATACTTTGG+GGG + Chr3:93804788-93804807 MsG0380017227.01.T01:CDS 45.0%
TGTGAACATGGTGAGCTTGT+TGG + Chr3:93805160-93805179 MsG0380017227.01.T01:CDS 45.0%
! GCTCATGATGGAAAGTTTGG+TGG - Chr3:93803475-93803494 None:intergenic 45.0%
!! GCAAGAGCGTTTGAATGAGA+TGG + Chr3:93803642-93803661 MsG0380017227.01.T01:intron 45.0%
!! GTTCTCATGGCGGACAAAAT+AGG + Chr3:93804338-93804357 MsG0380017227.01.T01:intron 45.0%
!! TATTACTGGCTTCCCTCCAT+TGG - Chr3:93804628-93804647 None:intergenic 45.0%
!!! TTTTTTCTTTGGTGGTGGCC+GGG - Chr3:93804209-93804228 None:intergenic 45.0%
!! ATAAAAAATATATAATTACT+GGG - Chr3:93802669-93802688 None:intergenic 5.0%
CTCATGGCTAGATTCGAACC+AGG - Chr3:93803698-93803717 None:intergenic 50.0%
GAGAACTTTGCCACCCATTG+CGG + Chr3:93803738-93803757 MsG0380017227.01.T01:intron 50.0%
TAGGCTTGTCACAGGGTACA+TGG + Chr3:93804437-93804456 MsG0380017227.01.T01:intron 50.0%
TCATCAACAGTTCCACCCCA+TGG - Chr3:93804756-93804775 None:intergenic 50.0%
! AAAGGGTGTGAAGACTCCAG+AGG + Chr3:93805070-93805089 MsG0380017227.01.T01:CDS 50.0%
! AGTTGGTTCCCTCCATTACC+TGG - Chr3:93802825-93802844 None:intergenic 50.0%
! GAGCCCCCAGAGTTTTCTTA+TGG + Chr3:93805122-93805141 MsG0380017227.01.T01:CDS 50.0%
! TGAGTCTAGCTCAGTTGGCA+GGG + Chr3:93804154-93804173 MsG0380017227.01.T01:intron 50.0%
!! TGGTGACGGAACTGTGAACA+TGG + Chr3:93805148-93805167 MsG0380017227.01.T01:CDS 50.0%
!!! TTTTTCTTTGGTGGTGGCCG+GGG - Chr3:93804208-93804227 None:intergenic 50.0%
AATCCCTCGAAGGACCGCAA+TGG - Chr3:93803755-93803774 None:intergenic 55.0%
AGAGCTAGAGCTACACCCTC+CGG - Chr3:93803348-93803367 None:intergenic 55.0%
AGTTGCGTGCAGAGGATACC+CGG + Chr3:93803786-93803805 MsG0380017227.01.T01:intron 55.0%
ATCCCTCGAAGGACCGCAAT+GGG - Chr3:93803754-93803773 None:intergenic 55.0%
CCAACTGAGCTAGACTCACG+AGG - Chr3:93804152-93804171 None:intergenic 55.0%
CCAACTTGAGATGGGTGACC+TGG - Chr3:93804555-93804574 None:intergenic 55.0%
CCAGGTCACCCATCTCAAGT+TGG + Chr3:93804552-93804571 MsG0380017227.01.T01:CDS 55.0%
CGATATGGTCTAGCTGCACC+AGG + Chr3:93804534-93804553 MsG0380017227.01.T01:CDS 55.0%
CTTGTCTCACACAGCTTGGG+AGG + Chr3:93804648-93804667 MsG0380017227.01.T01:CDS 55.0%
GAGACACGTGTCCCTAGCTT+TGG + Chr3:93803047-93803066 MsG0380017227.01.T01:CDS 55.0%
! CCTCGTGAGTCTAGCTCAGT+TGG + Chr3:93804149-93804168 MsG0380017227.01.T01:intron 55.0%
! GTGAGTCTAGCTCAGTTGGC+AGG + Chr3:93804153-93804172 MsG0380017227.01.T01:intron 55.0%
CACCCATTGCGGTCCTTCGA+GGG + Chr3:93803749-93803768 MsG0380017227.01.T01:intron 60.0%
GCACTTTCTGCTCCATGGGG+TGG + Chr3:93804741-93804760 MsG0380017227.01.T01:CDS 60.0%
CCACCCATTGCGGTCCTTCG+AGG + Chr3:93803748-93803767 MsG0380017227.01.T01:intron 65.0%
CCTCGAAGGACCGCAATGGG+TGG - Chr3:93803751-93803770 None:intergenic 65.0%
GGGACACGTGTCTCCACTCC+AGG - Chr3:93803041-93803060 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93802615 93805581 93802615 ID=MsG0380017227.01;Name=MsG0380017227.01
Chr3 mRNA 93802615 93805581 93802615 ID=MsG0380017227.01.T01;Parent=MsG0380017227.01;Name=MsG0380017227.01.T01;_AED=0.43;_eAED=0.43;_QI=78|1|1|1|1|1|2|208|449
Chr3 exon 93802615 93803108 93802615 ID=MsG0380017227.01.T01:exon:1436;Parent=MsG0380017227.01.T01
Chr3 exon 93804440 93805581 93804440 ID=MsG0380017227.01.T01:exon:1437;Parent=MsG0380017227.01.T01
Chr3 five_prime_UTR 93802615 93802692 93802615 ID=MsG0380017227.01.T01:five_prime_utr;Parent=MsG0380017227.01.T01
Chr3 CDS 93802693 93803108 93802693 ID=MsG0380017227.01.T01:cds;Parent=MsG0380017227.01.T01
Chr3 CDS 93804440 93805373 93804440 ID=MsG0380017227.01.T01:cds;Parent=MsG0380017227.01.T01
Chr3 three_prime_UTR 93805374 93805581 93805374 ID=MsG0380017227.01.T01:three_prime_utr;Parent=MsG0380017227.01.T01
Gene Sequence

>MsG0380017227.01.T01

ATGAAGGAACATAGTCTCAAAATTTGCATTACCAACACATTAACACTGTTAGTGATGGTATCATTAATTTGTTGCACCAATGTTGCCATTAGCACAAGCAACAACAACCTCAATCCAGTGATACTAATACCAGGTAATGGAGGGAACCAACTAGAAGCAAAACTAACCACTAAATATAAACCTTCTACCTTAATTTGTGATCCATGGTATCCTCCTTTCAAGAAGAAAAATGGATGGTTTAGATTATGGTTTGACCCAAGTGTCTTACTTGCTCCTTTCACCAAATGTTTTGCTTCTCGTATGACTCTTTATTATGATCAAGACCTTGATGATTTTTTTAATGCACCTGGAGTGGAGACACGTGTCCCTAGCTTTGGTTCTACTTCCTCTCTTCTTTATCTTAATCCTCGTCTTAAGCTTGTCACAGGGTACATGGCGCCCTTAGTAGAATCATTAGAACAGCTTGGTTACATAGATGGTGAAAATCTGTTTGGAGCTCCCTATGATTTTCGATATGGTCTAGCTGCACCAGGTCACCCATCTCAAGTTGGTTCCAAATTCCTAAACGACCTAAAGAATTTGATAGAAAAAGCAAGCAATTCCAATGGAGGGAAGCCAGTAATACTTGTCTCACACAGCTTGGGAGGTTTATTTGTCCTCGAACTCCTTAATCGAAACCCTTCTTCTTGGCGCAAGAAATTCATTAAACATTTTATAGCACTTTCTGCTCCATGGGGTGGAACTGTTGATGAAATGTTTACTTTTGCATCAGGCAATACTTTGGGGGTGCCATTAGTAAACCCTTTGCTAGTAAGAAATGAACAGAGAACTTCTGAGAGTAACCTATGGCTTTTGCCTAATCCTAAGATGTTTGATATTGATAAATCTTTAGTTACTACTCCATATAGAAGCTATTCAGCGCATGATATGGTTGATTTTCTTAAAGATATTGGTTTTCCTGAAGGGGTTTATCCTTATGAAACTCGCATTTTACCTTTGATAGCGAAAATAGATGCACCGGAAGTGGCTATGACTTGTATTATAGGAAAGGGTGTGAAGACTCCAGAGGAATTGTTTTATAGGAATGGTGATTTTGACGAGCCCCCAGAGTTTTCTTATGGTGATGGTGACGGAACTGTGAACATGGTGAGCTTGTTGGCACTTGAATCTCTATGGAAAGATGAAAAAAATCAGTACTTGAAAGTTATTAAGATTGGTGGGGTGACTCATACTTCTATATTGAAAGATAAAGTTGCACTTGATGAAATAATTGGTGAGATTAGTAGAATTAATTCTCATGCTCAACTTGATTTGAGGAATATTTCTTTAGCTGCATTTGATGAGAAATGA

Protein sequence

>MsG0380017227.01.T01

MKEHSLKICITNTLTLLVMVSLICCTNVAISTSNNNLNPVILIPGNGGNQLEAKLTTKYKPSTLICDPWYPPFKKKNGWFRLWFDPSVLLAPFTKCFASRMTLYYDQDLDDFFNAPGVETRVPSFGSTSSLLYLNPRLKLVTGYMAPLVESLEQLGYIDGENLFGAPYDFRYGLAAPGHPSQVGSKFLNDLKNLIEKASNSNGGKPVILVSHSLGGLFVLELLNRNPSSWRKKFIKHFIALSAPWGGTVDEMFTFASGNTLGVPLVNPLLVRNEQRTSESNLWLLPNPKMFDIDKSLVTTPYRSYSAHDMVDFLKDIGFPEGVYPYETRILPLIAKIDAPEVAMTCIIGKGVKTPEELFYRNGDFDEPPEFSYGDGDGTVNMVSLLALESLWKDEKNQYLKVIKIGGVTHTSILKDKVALDEIIGEISRINSHAQLDLRNISLAAFDEK*