AlfalfaGEDB | MsG0580028117.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028117.01

KEGG: K01623
GO: GO:0003824 GO:0004332 GO:0006096
PFAM: PF00274 PF12041

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028117.01.T01	AES98478.2	89.169	397	18	2	13	409	13	384	0	701

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028117.01.T01	P46257	88.301	359	41	1	52	409	1	359	0	642

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028117.01.T01	G7K694	89.169	397	18	2	13	409	13	384	0.0	701

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049027.01	MsG0580028117.01	0.807856	4.120195e-50	2.319904e-47
MsG0180004025.01	MsG0580028117.01	-0.802842	4.629639e-49	2.291448e-46
MsG0180005515.01	MsG0580028117.01	0.804721	1.885419e-49	9.793184e-47
MsG0180005881.01	MsG0580028117.01	0.832404	9.637680e-56	1.076163e-52
MsG0280007743.01	MsG0580028117.01	0.803415	3.524207e-49	1.769939e-46
MsG0280010604.01	MsG0580028117.01	0.813142	2.972953e-51	1.925755e-48
MsG0280011059.01	MsG0580028117.01	0.820684	6.023952e-53	4.798643e-50
MsG0380015891.01	MsG0580028117.01	-0.813393	2.617891e-51	1.707602e-48
MsG0380017437.01	MsG0580028117.01	0.815466	9.114619e-52	6.289203e-49
MsG0480018426.01	MsG0580028117.01	-0.800515	1.390310e-48	6.486290e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028117.01.T01	MTR_5g069050	89.169	397	18	2	13	409	13	384	0.0	701
MsG0580028117.01.T01	MTR_5g069055	95.415	349	16	0	61	409	10	358	0.0	680
MsG0580028117.01.T01	MTR_1g061050	85.387	349	51	0	61	409	10	358	0.0	611
MsG0580028117.01.T01	MTR_5g096670	76.504	349	81	1	61	409	10	357	0.0	538
MsG0580028117.01.T01	MTR_4g057670	51.724	377	176	5	35	409	28	400	1.51e-126	372
MsG0580028117.01.T01	MTR_4g071860	51.724	377	176	5	35	409	28	400	2.00e-126	372
MsG0580028117.01.T01	MTR_1g109200	51.966	356	166	4	55	409	40	391	3.15e-124	366
MsG0580028117.01.T01	MTR_4g071880	49.858	353	154	6	61	409	53	386	2.92e-107	322
MsG0580028117.01.T01	MTR_7g103920	66.667	96	7	1	163	258	11	81	1.79e-34	124
MsG0580028117.01.T01	MTR_3g065980	76.667	60	13	1	1	60	1	59	4.29e-19	90.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028117.01.T01	AT3G52930	84.916	358	54	0	52	409	1	358	0.0	625
MsG0580028117.01.T01	AT2G36460	83.240	358	60	0	52	409	1	358	0.0	612
MsG0580028117.01.T01	AT5G03690	84.286	350	54	1	61	409	10	359	0.0	586
MsG0580028117.01.T01	AT5G03690	84.241	349	54	1	62	409	45	393	0.0	585
MsG0580028117.01.T01	AT4G26530	75.358	349	86	0	61	409	10	358	0.0	539
MsG0580028117.01.T01	AT4G26530	75.358	349	86	0	61	409	10	358	0.0	539
MsG0580028117.01.T01	AT4G26530	75.358	349	86	0	61	409	10	358	0.0	539
MsG0580028117.01.T01	AT4G26520	69.914	349	105	0	61	409	7	355	2.29e-175	494
MsG0580028117.01.T01	AT4G26520	69.914	349	105	0	61	409	7	355	2.29e-175	494
MsG0580028117.01.T01	AT4G26520	69.914	349	105	0	61	409	10	358	2.75e-175	494

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Find 131 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACGGTGGTGGTGGAA+TGG	0.504858	5:-74859551	MsG0580028117.01.T01:CDS
AACAAAGTACCCTTAAGGCA+TGG	0.626614	5:-74857768	MsG0580028117.01.T01:CDS
AACAACAACACAAACAACGG+TGG	0.690508	5:-74859562	MsG0580028117.01.T01:CDS
AACAACACAAACAACGGTGG+TGG	0.579288	5:-74859559	MsG0580028117.01.T01:CDS
AACACAAACAACGGTGGTGG+TGG	0.504001	5:-74859556	MsG0580028117.01.T01:CDS
AACCCTCTTCTAGTCTTTAA+GGG	0.346087	5:+74857571	None:intergenic
AAGATACTTAAGGACACCAG+GGG	0.730918	5:+74859079	None:intergenic
AAGCCTAACATGGTTACCCC+TGG	0.543234	5:-74857997	MsG0580028117.01.T01:CDS
AAGGAAGCTGGTGTGCTTCC+TGG	0.302664	5:-74858390	MsG0580028117.01.T01:CDS
AAGGGCTAAAGCTAATTCTG+AGG	0.658549	5:-74857698	MsG0580028117.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAACAACAACACAAACAA+CGG	-	Chr5:74857534-74857553	MsG0580028117.01.T01:CDS	30.0%
GAACAACTTGATATGGTTAT+GGG	-	Chr5:74857642-74857661	MsG0580028117.01.T01:CDS	30.0%
TAACTCCACTAAGATACTTA+AGG	+	Chr5:74858033-74858052	None:intergenic	30.0%
TAATCTCAAATTGACAACAC+AGG	+	Chr5:74858544-74858563	None:intergenic	30.0%
TGAACAACTTGATATGGTTA+TGG	-	Chr5:74857641-74857660	MsG0580028117.01.T01:CDS	30.0%
TGGAAAAGAAGAAAATGTGA+AGG	-	Chr5:74859356-74859375	MsG0580028117.01.T01:intron	30.0%
AATGCCATTAACCAAGTCAA+GGG	-	Chr5:74859264-74859283	MsG0580028117.01.T01:intron	35.0%
ATCAGAGAGTCTTCATGTTA+AGG	-	Chr5:74859470-74859489	MsG0580028117.01.T01:CDS	35.0%
ATCCCTTAAAGACTAGAAGA+GGG	-	Chr5:74859526-74859545	MsG0580028117.01.T01:CDS	35.0%
CAATGCATGTTCAAAGACAT+TGG	+	Chr5:74858475-74858494	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	74857531	74859590	74857531	ID=MsG0580028117.01;Name=MsG0580028117.01
Chr5	mRNA	74857531	74859590	74857531	ID=MsG0580028117.01.T01;Parent=MsG0580028117.01;Name=MsG0580028117.01.T01;_AED=0.40;_eAED=0.52;_QI=0\|0\|0\|1\|1\|1\|3\|0\|437
Chr5	exon	74859410	74859590	74859410	ID=MsG0580028117.01.T01:exon:15323;Parent=MsG0580028117.01.T01
Chr5	exon	74859030	74859257	74859030	ID=MsG0580028117.01.T01:exon:15322;Parent=MsG0580028117.01.T01
Chr5	exon	74857531	74858435	74857531	ID=MsG0580028117.01.T01:exon:15321;Parent=MsG0580028117.01.T01
Chr5	CDS	74859410	74859590	74859410	ID=MsG0580028117.01.T01:cds;Parent=MsG0580028117.01.T01
Chr5	CDS	74859030	74859257	74859030	ID=MsG0580028117.01.T01:cds;Parent=MsG0580028117.01.T01
Chr5	CDS	74857531	74858435	74857531	ID=MsG0580028117.01.T01:cds;Parent=MsG0580028117.01.T01

Gene Sequence

>MsG0580028117.01.T01

ATGCAAAACAACAACACAAACAACGGTGGTGGTGGAATGGACGAGTTACTAGCAGCATTAGGTTACAAGGTTCGTTCATCATCGGACATGGCTGACGTAGCTGAGAAACCTGAACAACTTGATATGGTTATGGGTAATGCTCAAGAAGAAGGAATCAACCATCTTTCTGCAGATACTGTTGATGAGCTTATTGCCAATGCTGCATACATCGGCACACCTGGAAAAGGTATTCTTGCTGCTGATGAGTCAACCGGAACAATTGGAGAGTGTCTAGCTAGCATCAGCGTTGAGAATGTTGAATCCAACAGACGTGCTCTTCGTGAACTCCTTTTCACCGCCCCTGGTGTCCTTAAGTATCTTAGTGGAGTTATCCTCTCTGAGGAAACCCTCTACCAATGCACCACTGCTGGCAAGCCTTTTGTTGATGTCTTGAAGGAAGCTGGTGTGCTTCCTGGTATTAAGGTTGACAAGGGTACCGTTGAGCTTGCAGGGACTGATGGAGAAACCACCACTCAGGGTCTCGACGGACTTGGTGCACGCTGTATCAAGTACTATGAAGCTGGTGCACGTTTCGCTAAATGGCGTGCCATGCTCAAAATTGGCCCCAACGAGCCATCTGAACACTCTATCCATGAGAATGCCTATGCTTTGGCCCGATACGCAGTCATATGCCAAGAGAATGGACTTATACCAATTGTTGAGCCTGAGATCCTTGTTGATGGACCTCATGACATTCAAAAGTGTGCTGCTGTTACCGAGCGTGTCCTTGCAGCATGCTACAAGGCCTTGAACGACCACCATGTCCTCCTTGAAAGCACTCTCTTGAAGCCTAACATGGTTACCCCTGGATCTGATGCTCCAAAGGTTGCACCCGAGGTTGTCGCTGAGCACACCGTTAAAGCTTTGCAGCGAACCGTACCTGCTGCGGTTCCCGCTGTTGTTTTCTTGTCTGGTGGACAGAGTGAGGAAGAGGCCAGTGTCAACCTCAATGCCATTAACCAAGTCAAGGGTAAGAAGCCATGGACTCTCTCTTTCTCATTTGGAAGGGCACTTCAACAAAGTACCCTTAAGGCATGGTCTGGAAAAGAAGAAAATGTGAAGGCTGCTCAAGAAGCGTTGTTGACAAGGGCTAAAGCTAATTCTGAGGCAACTCTTGGAACTTACAAGGGTAACTCCAAACTTGGTGCCGGTGCATCAGAGAGTCTTCATGTTAAGGACTATAAGTACTTATCAAATTGTTGGTGTGTGTATCCCTTAAAGACTAGAAGAGGGTTGAATTTCTTGTTTATGATTATTGTAGCTTTGTTACCGTAG

Protein sequence

>MsG0580028117.01.T01

MQNNNTNNGGGGMDELLAALGYKVRSSSDMADVAEKPEQLDMVMGNAQEEGINHLSADTVDELIANAAYIGTPGKGILAADESTGTIGECLASISVENVESNRRALRELLFTAPGVLKYLSGVILSEETLYQCTTAGKPFVDVLKEAGVLPGIKVDKGTVELAGTDGETTTQGLDGLGARCIKYYEAGARFAKWRAMLKIGPNEPSEHSIHENAYALARYAVICQENGLIPIVEPEILVDGPHDIQKCAAVTERVLAACYKALNDHHVLLESTLLKPNMVTPGSDAPKVAPEVVAEHTVKALQRTVPAAVPAVVFLSGGQSEEEASVNLNAINQVKGKKPWTLSFSFGRALQQSTLKAWSGKEENVKAAQEALLTRAKANSEATLGTYKGNSKLGAGASESLHVKDYKYLSNCWCVYPLKTRRGLNFLFMIIVALLP*