AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028907.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028907.01.T01 MTR_5g077280 91.765 85 7 0 19 103 118 202 1.99e-48 153
MsG0580028907.01.T01 MTR_5g091900 62.353 85 32 0 19 103 148 232 1.17e-29 106
MsG0580028907.01.T01 MTR_5g077270 64.912 57 20 0 19 75 798 854 2.32e-18 79.0
MsG0580028907.01.T01 MTR_5g077280 80.000 40 8 0 19 58 118 157 1.47e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028907.01.T01 AT5G16550 47.619 84 37 2 20 103 164 240 9.96e-16 70.1

Find 65 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATAACAGTTATATTAA+AGG 0.151879 5:+88342220 None:intergenic
TGTATTGTGTTACACAATTA+AGG 0.154601 5:-88342496 MsG0580028907.01.T01:three_prime_UTR
TTACCTTATGCTTCTCCTTC+TGG 0.206427 5:-88344079 MsG0580028907.01.T01:five_prime_UTR
CAATTTCAACAGTTGTCTTT+TGG 0.213908 5:-88343932 MsG0580028907.01.T01:CDS
AACTGTTGAAATTGCAAATA+TGG 0.243964 5:+88343941 None:intergenic
GGTGGTGGCCGGAGGATTCT+TGG 0.250332 5:-88344013 MsG0580028907.01.T01:CDS
ACCAAACAGTGAGTGGGATT+TGG 0.280277 5:+88342585 None:intergenic
TTCAAATTATTCTGCTGCTT+GGG 0.313188 5:-88342730 MsG0580028907.01.T01:CDS
TCGACCTCTCCTTCTCATTT+CGG 0.313356 5:-88345712 MsG0580028907.01.T01:intron
CCAAACAGTGAGTGGGATTT+GGG 0.313820 5:+88342586 None:intergenic
CCCAAATCCCACTCACTGTT+TGG 0.345488 5:-88342586 MsG0580028907.01.T01:three_prime_UTR
TTTAGTGACAGCATATATAT+TGG 0.348587 5:-88343978 MsG0580028907.01.T01:CDS
TAATTAAATGTGATCAAGAT+TGG 0.358830 5:+88346005 None:intergenic
TTGAGTTCTTCGATCTGAAC+TGG 0.371062 5:-88345945 MsG0580028907.01.T01:five_prime_UTR
TCTAGAAGCTTCGGGAATAT+AGG 0.372680 5:+88345781 None:intergenic
TTCATTTCTTTGGTGGTGGC+CGG 0.390732 5:-88344024 MsG0580028907.01.T01:CDS
GTGTAGTTTCTAGAAGCTTC+GGG 0.394632 5:+88345773 None:intergenic
ATTGCTCTTGTTGCCTTGAC+AGG 0.399432 5:-88344107 MsG0580028907.01.T01:five_prime_UTR
AGTGTAGTTTCTAGAAGCTT+CGG 0.407995 5:+88345772 None:intergenic
ACCTGTGATCAGCTCCTAAT+CGG 0.414543 5:+88342680 None:intergenic
GTATTGTGTTACACAATTAA+GGG 0.422615 5:-88342495 MsG0580028907.01.T01:three_prime_UTR
CACTCACTGTTTGGTTTCGA+TGG 0.430823 5:-88342577 MsG0580028907.01.T01:three_prime_UTR
TTCACACAAACATTCCGATT+AGG 0.433053 5:-88342694 MsG0580028907.01.T01:exon
CAAAAGCTTCTTCTGTTGAC+TGG 0.440439 5:-88342615 MsG0580028907.01.T01:three_prime_UTR
TTTCAAATTATTCTGCTGCT+TGG 0.446312 5:-88342731 MsG0580028907.01.T01:CDS
AACCTTCTTATACTGCTAAT+CGG 0.456832 5:-88345821 MsG0580028907.01.T01:five_prime_UTR
ATAATACAAGCAGGATGGGT+TGG 0.474448 5:-88342834 MsG0580028907.01.T01:intron
GTTATAATATGATCCTGCTC+TGG 0.487746 5:+88342260 None:intergenic
ATCCGATTAGCAGTATAAGA+AGG 0.498829 5:+88345819 None:intergenic
TCCGATTAGGAGCTGATCAC+AGG 0.513825 5:-88342681 MsG0580028907.01.T01:exon
AATCGGAATGTTTGTGTGAA+AGG 0.516233 5:+88342697 None:intergenic
TTGATAGCTAGCAAGAGCCT+TGG 0.537563 5:-88342792 MsG0580028907.01.T01:CDS
CAACCAGAAGGAGAAGCATA+AGG 0.540150 5:+88344076 None:intergenic
AATGAGAAGGAGAGGTCGAA+GGG 0.543624 5:+88345716 None:intergenic
GAGATGGCAGAGAAAGAAAA+CGG 0.543810 5:-88345921 MsG0580028907.01.T01:five_prime_UTR
GTGGCTATTCTGATAACTGC+AGG 0.545502 5:-88343903 MsG0580028907.01.T01:intron
TACATGTGGATGCTGTGAAA+TGG 0.547387 5:-88342638 MsG0580028907.01.T01:three_prime_UTR
AGAAGGAGAAGCATAAGGTA+AGG 0.552713 5:+88344081 None:intergenic
AATGAAAAGAGAGACAATGA+TGG 0.559549 5:+88344041 None:intergenic
ATTTCTTTGGTGGTGGCCGG+AGG 0.560839 5:-88344021 MsG0580028907.01.T01:CDS
TTCGATCTGAACTGGAGAGA+TGG 0.561622 5:-88345937 MsG0580028907.01.T01:five_prime_UTR
TCAAATTATTCTGCTGCTTG+GGG 0.563978 5:-88342729 MsG0580028907.01.T01:CDS
TATTCATTTGAAACCAGAGC+AGG 0.565831 5:-88342273 MsG0580028907.01.T01:three_prime_UTR
AGAAAGAGCCAAGAATCCTC+CGG 0.567366 5:+88344005 None:intergenic
TGTTAGCCTACGTAATTACC+TGG 0.568456 5:-88342449 MsG0580028907.01.T01:three_prime_UTR
CATCGAAACCAAACAGTGAG+TGG 0.576080 5:+88342578 None:intergenic
AAATGAGAAGGAGAGGTCGA+AGG 0.579200 5:+88345715 None:intergenic
AGCTTAAGTTGTACAATACC+AGG 0.580332 5:+88342431 None:intergenic
CATTGATAGTTGCAACCAGA+AGG 0.586472 5:+88344064 None:intergenic
TGACGAGACCAGCGAAAACA+CGG 0.590317 5:+88345747 None:intergenic
AGCAGTGTTGATAAATATGC+TGG 0.593773 5:-88342524 MsG0580028907.01.T01:three_prime_UTR
GGATCATATTATAACACGAC+AGG 0.594084 5:-88342252 MsG0580028907.01.T01:three_prime_UTR
AATGTTTGTGTGAAAGGTTG+CGG 0.597552 5:+88342703 None:intergenic
TAAGGTAAGGAGTCCTGTCA+AGG 0.613972 5:+88344094 None:intergenic
ATCGAAACCAAACAGTGAGT+GGG 0.619872 5:+88342579 None:intergenic
TGCAGTTATCAGAATAGCCA+CGG 0.625555 5:+88343905 None:intergenic
GTAACCGAACCGAAATGAGA+AGG 0.629050 5:+88345703 None:intergenic
AAACACTCATTAAGCGTGAG+TGG 0.633113 5:-88342762 MsG0580028907.01.T01:CDS
TGCATGAAATTGCATTTGTG+TGG 0.640656 5:-88342408 MsG0580028907.01.T01:three_prime_UTR
CGAACCGAAATGAGAAGGAG+AGG 0.653048 5:+88345708 None:intergenic
TCGGGAATATAGGAGAGATG+AGG 0.658596 5:+88345791 None:intergenic
CTTATGTGTGAAGTTACATG+TGG 0.666580 5:-88342652 MsG0580028907.01.T01:three_prime_UTR
ATTAGGAGCTGATCACAGGT+AGG 0.671400 5:-88342677 MsG0580028907.01.T01:exon
ACAATACCAGGTAATTACGT+AGG 0.690583 5:+88342443 None:intergenic
TGATGTACTTGTATGAACGA+AGG 0.757731 5:-88342355 MsG0580028907.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAACAGTTATATTAA+AGG + Chr5:88346017-88346036 None:intergenic 10.0%
!! TAACTTTAAATTTATTAAAC+TGG + Chr5:88345122-88345141 None:intergenic 10.0%
!!! ATTTTAATATGATTTTGTTT+TGG + Chr5:88342801-88342820 None:intergenic 10.0%
!! AAAAATATATTGTCATGTTA+TGG + Chr5:88345259-88345278 None:intergenic 15.0%
!! CATTCAAAATTATGAAATTA+TGG + Chr5:88343265-88343284 None:intergenic 15.0%
!!! TAAATTAGTAATGTTTTTCA+GGG - Chr5:88342824-88342843 MsG0580028907.01.T01:CDS 15.0%
!! AATGACATGTAGATATAAAT+CGG - Chr5:88344461-88344480 MsG0580028907.01.T01:intron 20.0%
!! AGATTGCATTTATATCATTT+CGG - Chr5:88343870-88343889 MsG0580028907.01.T01:intron 20.0%
!! CTTCTATATTTATTCTATGT+GGG - Chr5:88343755-88343774 MsG0580028907.01.T01:intron 20.0%
!! GCAATTAAAGAAAAAGAAAA+AGG + Chr5:88344374-88344393 None:intergenic 20.0%
!! TAATTAAATGTGATCAAGAT+TGG + Chr5:88342232-88342251 None:intergenic 20.0%
!! TGTTAATCATGTTAAAAATG+TGG - Chr5:88343066-88343085 MsG0580028907.01.T01:intron 20.0%
!! TTAAAGAAAAAGAAAAAGGT+TGG + Chr5:88344370-88344389 None:intergenic 20.0%
!!! AATTTTTTCTGATCATTGAT+TGG - Chr5:88344545-88344564 MsG0580028907.01.T01:intron 20.0%
!!! ATTTTTTCTGATCATTGATT+GGG - Chr5:88344546-88344565 MsG0580028907.01.T01:intron 20.0%
!!! CTAAATTAGTAATGTTTTTC+AGG - Chr5:88342823-88342842 MsG0580028907.01.T01:CDS 20.0%
!!! TTTTGTTTTTTCTCCTTTTT+TGG - Chr5:88345347-88345366 MsG0580028907.01.T01:intron 20.0%
! AACATGAAAATAATACAAGC+AGG - Chr5:88345391-88345410 MsG0580028907.01.T01:intron 25.0%
! AACTGTTGAAATTGCAAATA+TGG + Chr5:88344296-88344315 None:intergenic 25.0%
! AATCAGCATATCAAGAAAAT+AGG - Chr5:88344038-88344057 MsG0580028907.01.T01:CDS 25.0%
! ACCATAAACATTCAACTAAA+AGG + Chr5:88344078-88344097 None:intergenic 25.0%
! ATCAGCATATCAAGAAAATA+GGG - Chr5:88344039-88344058 MsG0580028907.01.T01:CDS 25.0%
! ATGACATGTAGATATAAATC+GGG - Chr5:88344462-88344481 MsG0580028907.01.T01:intron 25.0%
! ATTTCCTAATGTGCATTATT+AGG + Chr5:88344900-88344919 None:intergenic 25.0%
! GCTTCTATATTTATTCTATG+TGG - Chr5:88343754-88343773 MsG0580028907.01.T01:intron 25.0%
! GTATTGTGTTACACAATTAA+GGG - Chr5:88345739-88345758 MsG0580028907.01.T01:five_prime_UTR 25.0%
! TACTATTATTACTGCTTTCA+CGG + Chr5:88343588-88343607 None:intergenic 25.0%
! TGTATTGTGTTACACAATTA+AGG - Chr5:88345738-88345757 MsG0580028907.01.T01:five_prime_UTR 25.0%
! TTTAGTGACAGCATATATAT+TGG - Chr5:88344256-88344275 MsG0580028907.01.T01:intron 25.0%
! TTTCAATCAACTCAACAAAT+TGG - Chr5:88345008-88345027 MsG0580028907.01.T01:intron 25.0%
!! GTTTCTTTTCAAATTTCTTC+AGG - Chr5:88344096-88344115 MsG0580028907.01.T01:five_prime_UTR 25.0%
!! TTAATATTTTCTCTCTAGTC+AGG + Chr5:88343216-88343235 None:intergenic 25.0%
!!! ATGCTGATTCACTAAAAATA+TGG + Chr5:88344027-88344046 None:intergenic 25.0%
!!! TCCTTTTAGTTGAATGTTTA+TGG - Chr5:88344074-88344093 MsG0580028907.01.T01:five_prime_UTR 25.0%
!!! TGCTTTTTTTTTATGAAGAC+TGG - Chr5:88344522-88344541 MsG0580028907.01.T01:intron 25.0%
!!! TTTTCAAATTTCTTCAGGTT+GGG - Chr5:88344101-88344120 MsG0580028907.01.T01:five_prime_UTR 25.0%
AAAATTTCACCCGAATAAGT+TGG + Chr5:88342940-88342959 None:intergenic 30.0%
AAATTTCACCCGAATAAGTT+GGG + Chr5:88342939-88342958 None:intergenic 30.0%
AACCTTCTTATACTGCTAAT+CGG - Chr5:88342413-88342432 MsG0580028907.01.T01:three_prime_UTR 30.0%
AATGAAAAGAGAGACAATGA+TGG + Chr5:88344196-88344215 None:intergenic 30.0%
ACTAGATGTTAGACCAAAAA+AGG + Chr5:88345363-88345382 None:intergenic 30.0%
ACTCAAGTATCTTTCTATAC+AGG + Chr5:88344588-88344607 None:intergenic 30.0%
ATCACCTAATAATGCACATT+AGG - Chr5:88344893-88344912 MsG0580028907.01.T01:intron 30.0%
ATTAACTCAAGTGCATGATT+GGG - Chr5:88343137-88343156 MsG0580028907.01.T01:intron 30.0%
ATTGAAAGAAAGAATCCATC+AGG + Chr5:88344995-88345014 None:intergenic 30.0%
ATTTATTCTATGTGGGACTT+TGG - Chr5:88343762-88343781 MsG0580028907.01.T01:intron 30.0%
CCATCATAACGAAAAAAATG+TGG - Chr5:88345928-88345947 MsG0580028907.01.T01:five_prime_UTR 30.0%
CGAAAAAAATGTGGAAACAT+CGG - Chr5:88345937-88345956 MsG0580028907.01.T01:five_prime_UTR 30.0%
CTACTTGACCAACAAAAAAA+GGG - Chr5:88342970-88342989 MsG0580028907.01.T01:intron 30.0%
CTCAAGTATCTTTCTATACA+GGG + Chr5:88344587-88344606 None:intergenic 30.0%
GAAAAAAATGTGGAAACATC+GGG - Chr5:88345938-88345957 MsG0580028907.01.T01:five_prime_UTR 30.0%
GAAAATAATACAAGCAGGAT+GGG - Chr5:88345396-88345415 MsG0580028907.01.T01:intron 30.0%
TAACTGCAATGTAACAGAAT+TGG + Chr5:88343696-88343715 None:intergenic 30.0%
TACTTGACCAACAAAAAAAG+GGG - Chr5:88342971-88342990 MsG0580028907.01.T01:intron 30.0%
TATTAACAATCGTTGTTCTG+AGG - Chr5:88342710-88342729 MsG0580028907.01.T01:CDS 30.0%
TCTTAGATAAAATCCATCTC+AGG + Chr5:88345324-88345343 None:intergenic 30.0%
TGAAAATAATACAAGCAGGA+TGG - Chr5:88345395-88345414 MsG0580028907.01.T01:intron 30.0%
TGTGATCATTGATATTGTAG+AGG - Chr5:88343451-88343470 MsG0580028907.01.T01:intron 30.0%
TGTGCATTATTAGGTGATTA+AGG + Chr5:88344891-88344910 None:intergenic 30.0%
TGTGTCAGCATTCAAATAAT+TGG + Chr5:88344937-88344956 None:intergenic 30.0%
TTAGTTAGTTAGTTACAGAG+TGG - Chr5:88343717-88343736 MsG0580028907.01.T01:intron 30.0%
TTTAGCATGTTCTCTTGAAT+TGG + Chr5:88343979-88343998 None:intergenic 30.0%
TTTCAAATTATTCTGCTGCT+TGG - Chr5:88345503-88345522 MsG0580028907.01.T01:intron 30.0%
! AACTTATTCGGGTGAAATTT+TGG - Chr5:88342939-88342958 MsG0580028907.01.T01:intron 30.0%
! ATTAAGGGTTGAAAAAGCAT+TGG - Chr5:88345754-88345773 MsG0580028907.01.T01:five_prime_UTR 30.0%
! CAATTTCAACAGTTGTCTTT+TGG - Chr5:88344302-88344321 MsG0580028907.01.T01:intron 30.0%
! CTTTTCAAATTTCTTCAGGT+TGG - Chr5:88344100-88344119 MsG0580028907.01.T01:five_prime_UTR 30.0%
! GAACTCAATTTTCAGTTAGT+TGG + Chr5:88342277-88342296 None:intergenic 30.0%
! TGTCTCTCTTTTCATTTCTT+TGG - Chr5:88344200-88344219 MsG0580028907.01.T01:intron 30.0%
! TTCAAATTATTCTGCTGCTT+GGG - Chr5:88345504-88345523 MsG0580028907.01.T01:intron 30.0%
! TTTTTGCATGTAATTGTACG+CGG - Chr5:88344676-88344695 MsG0580028907.01.T01:intron 30.0%
!! CATCAGGATTTTTAAAAGTC+CGG + Chr5:88343558-88343577 None:intergenic 30.0%
!! TTTTGGAGGGAAAAAAATAG+TGG - Chr5:88343398-88343417 MsG0580028907.01.T01:intron 30.0%
!!! CCACATTTTTTTCGTTATGA+TGG + Chr5:88345931-88345950 None:intergenic 30.0%
AAGAATCCATCAGGTAATTC+TGG + Chr5:88344986-88345005 None:intergenic 35.0%
AATCGGAATGTTTGTGTGAA+AGG + Chr5:88345540-88345559 None:intergenic 35.0%
AATGTTTGTGTGAAAGGTTG+CGG + Chr5:88345534-88345553 None:intergenic 35.0%
AATTCTGCATGTGATTAACC+TGG - Chr5:88343330-88343349 MsG0580028907.01.T01:intron 35.0%
ACAATACCAGGTAATTACGT+AGG + Chr5:88345794-88345813 None:intergenic 35.0%
ATCCGATTAGCAGTATAAGA+AGG + Chr5:88342418-88342437 None:intergenic 35.0%
ATTTGGTTGCTCTGTTAATC+AGG - Chr5:88343837-88343856 MsG0580028907.01.T01:intron 35.0%
CAGTTGACATTTCTAACAGT+CGG - Chr5:88345042-88345061 MsG0580028907.01.T01:intron 35.0%
CCTACTTGACCAACAAAAAA+AGG - Chr5:88342969-88342988 MsG0580028907.01.T01:intron 35.0%
CTCATAAACTTAGCTTAGCT+GGG - Chr5:88342868-88342887 MsG0580028907.01.T01:intron 35.0%
CTTATGTGTGAAGTTACATG+TGG - Chr5:88345582-88345601 MsG0580028907.01.T01:intron 35.0%
GATTAACTCAAGTGCATGAT+TGG - Chr5:88343136-88343155 MsG0580028907.01.T01:intron 35.0%
GGATCATATTATAACACGAC+AGG - Chr5:88345982-88346001 MsG0580028907.01.T01:five_prime_UTR 35.0%
GTTATAATATGATCCTGCTC+TGG + Chr5:88345977-88345996 None:intergenic 35.0%
TCTCATAAACTTAGCTTAGC+TGG - Chr5:88342867-88342886 MsG0580028907.01.T01:intron 35.0%
TGAATACCAGAATTACCTGA+TGG - Chr5:88344977-88344996 MsG0580028907.01.T01:intron 35.0%
TGATGTACTTGTATGAACGA+AGG - Chr5:88345879-88345898 MsG0580028907.01.T01:five_prime_UTR 35.0%
TGATTAACAGAGCAACCAAA+TGG + Chr5:88343838-88343857 None:intergenic 35.0%
TGCATGAAATTGCATTTGTG+TGG - Chr5:88345826-88345845 MsG0580028907.01.T01:five_prime_UTR 35.0%
TTAACTCAAGTGCATGATTG+GGG - Chr5:88343138-88343157 MsG0580028907.01.T01:intron 35.0%
TTAGCATCAATACCTCAGTT+TGG + Chr5:88344843-88344862 None:intergenic 35.0%
TTCACACAAACATTCCGATT+AGG - Chr5:88345540-88345559 MsG0580028907.01.T01:intron 35.0%
TTTCCCTCCAAAATGTTTCA+TGG + Chr5:88343391-88343410 None:intergenic 35.0%
! AGCTTAAGTTGTACAATACC+AGG + Chr5:88345806-88345825 None:intergenic 35.0%
! AGTGTAGTTTCTAGAAGCTT+CGG + Chr5:88342465-88342484 None:intergenic 35.0%
! ATGAGTGTTTTGCAAATCCA+AGG + Chr5:88345462-88345481 None:intergenic 35.0%
! CTCAATTTTCAGTTAGTTGG+AGG + Chr5:88342274-88342293 None:intergenic 35.0%
! CTCTCTTTTCATTTCTTTGG+TGG - Chr5:88344203-88344222 MsG0580028907.01.T01:intron 35.0%
! TATTCATTTGAAACCAGAGC+AGG - Chr5:88345961-88345980 MsG0580028907.01.T01:five_prime_UTR 35.0%
! TCAAATTATTCTGCTGCTTG+GGG - Chr5:88345505-88345524 MsG0580028907.01.T01:intron 35.0%
! TCTTTTCATTTCTTTGGTGG+TGG - Chr5:88344206-88344225 MsG0580028907.01.T01:intron 35.0%
! TGTCCATGAAACATTTTGGA+GGG - Chr5:88343385-88343404 MsG0580028907.01.T01:intron 35.0%
! TTGGATTCTTTTGTACTGCA+TGG - Chr5:88345419-88345438 MsG0580028907.01.T01:intron 35.0%
!! AACAAAGTGTCGCAAAAGTA+GGG + Chr5:88343050-88343069 None:intergenic 35.0%
!! AGCAGTGTTGATAAATATGC+TGG - Chr5:88345710-88345729 MsG0580028907.01.T01:intron 35.0%
!! CTGAGGTATTGATGCTAAAT+AGG - Chr5:88344845-88344864 MsG0580028907.01.T01:intron 35.0%
!! TAACAAAGTGTCGCAAAAGT+AGG + Chr5:88343051-88343070 None:intergenic 35.0%
!!! AATTGCACCCCTTTTTTTGT+TGG + Chr5:88342981-88343000 None:intergenic 35.0%
!!! CCTTTTTTTGTTGGTCAAGT+AGG + Chr5:88342972-88342991 None:intergenic 35.0%
AAACACTCATTAAGCGTGAG+TGG - Chr5:88345472-88345491 MsG0580028907.01.T01:intron 40.0%
AACAATGCAGTCATTGCTGT+CGG + Chr5:88345184-88345203 None:intergenic 40.0%
ACATTGCAACATGCAAGAGT+CGG - Chr5:88342895-88342914 MsG0580028907.01.T01:intron 40.0%
AGTAGCTGATCTCCATCAAA+CGG - Chr5:88345149-88345168 MsG0580028907.01.T01:intron 40.0%
ATAATACAAGCAGGATGGGT+TGG - Chr5:88345400-88345419 MsG0580028907.01.T01:intron 40.0%
ATAGTGGTTGCAGTAACGAT+TGG - Chr5:88343414-88343433 MsG0580028907.01.T01:intron 40.0%
ATCGAAACCAAACAGTGAGT+GGG + Chr5:88345658-88345677 None:intergenic 40.0%
ATCGGGACTATAATACATGC+TGG - Chr5:88344479-88344498 MsG0580028907.01.T01:intron 40.0%
CAAAAGCTTCTTCTGTTGAC+TGG - Chr5:88345619-88345638 MsG0580028907.01.T01:intron 40.0%
CAACACAAACACACAGAAAC+AGG - Chr5:88344754-88344773 MsG0580028907.01.T01:intron 40.0%
CATTTCTAACAGTCGGATCT+TGG - Chr5:88345049-88345068 MsG0580028907.01.T01:intron 40.0%
CCATAGGTGTAGGGAAAATT+GGG - Chr5:88343362-88343381 MsG0580028907.01.T01:intron 40.0%
CCTGGATTTCCCAACTTATT+CGG - Chr5:88342927-88342946 MsG0580028907.01.T01:intron 40.0%
CTCTGGATCTTTAATCCCTT+AGG + Chr5:88343186-88343205 None:intergenic 40.0%
CTGGATTTCCCAACTTATTC+GGG - Chr5:88342928-88342947 MsG0580028907.01.T01:intron 40.0%
GAGATGGCAGAGAAAGAAAA+CGG - Chr5:88342313-88342332 MsG0580028907.01.T01:three_prime_UTR 40.0%
TAAACTTAGCTTAGCTGGGA+AGG - Chr5:88342872-88342891 MsG0580028907.01.T01:intron 40.0%
TAACTCAAGTGCATGATTGG+GGG - Chr5:88343139-88343158 MsG0580028907.01.T01:intron 40.0%
TACATGTGGATGCTGTGAAA+TGG - Chr5:88345596-88345615 MsG0580028907.01.T01:intron 40.0%
TAGGTGATTAAGGAGTTCTG+AGG + Chr5:88344881-88344900 None:intergenic 40.0%
TATGAAACATTGACACGCAC+AGG - Chr5:88344723-88344742 MsG0580028907.01.T01:intron 40.0%
TCATTTCGGTTTCATCCTTC+TGG - Chr5:88343884-88343903 MsG0580028907.01.T01:intron 40.0%
TCGGGACTATAATACATGCT+GGG - Chr5:88344480-88344499 MsG0580028907.01.T01:intron 40.0%
TCTAGAAGCTTCGGGAATAT+AGG + Chr5:88342456-88342475 None:intergenic 40.0%
TCTAGTCAGGATTCAAACTC+TGG + Chr5:88343203-88343222 None:intergenic 40.0%
TGCAGTTATCAGAATAGCCA+CGG + Chr5:88344332-88344351 None:intergenic 40.0%
TTACCTTATGCTTCTCCTTC+TGG - Chr5:88344155-88344174 MsG0580028907.01.T01:intron 40.0%
TTATGTCGCAGTCTAGATTG+TGG - Chr5:88343525-88343544 MsG0580028907.01.T01:intron 40.0%
TTGAGTTCTTCGATCTGAAC+TGG - Chr5:88342289-88342308 MsG0580028907.01.T01:three_prime_UTR 40.0%
TTGCAGTAAACACAACCAGA+AGG + Chr5:88343902-88343921 None:intergenic 40.0%
TTTGCGACTGTAGGAAACTT+AGG - Chr5:88345203-88345222 MsG0580028907.01.T01:intron 40.0%
! AGAAGGAGAAGCATAAGGTA+AGG + Chr5:88344156-88344175 None:intergenic 40.0%
! AGGTGATTAAGGAGTTCTGA+GGG + Chr5:88344880-88344899 None:intergenic 40.0%
! CATTGATAGTTGCAACCAGA+AGG + Chr5:88344173-88344192 None:intergenic 40.0%
! CCAATTTTCCCTACACCTAT+GGG + Chr5:88343364-88343383 None:intergenic 40.0%
! GAAGTTTTTGCTTCCTGAGA+TGG - Chr5:88345308-88345327 MsG0580028907.01.T01:intron 40.0%
! GTGTAGTTTCTAGAAGCTTC+GGG + Chr5:88342464-88342483 None:intergenic 40.0%
! GTGTCCATGAAACATTTTGG+AGG - Chr5:88343384-88343403 MsG0580028907.01.T01:intron 40.0%
! TAAGTTGGGAAATCCAGGAT+TGG + Chr5:88342925-88342944 None:intergenic 40.0%
! TGAGTATTCCGAAAAGTGTG+TGG - Chr5:88344603-88344622 MsG0580028907.01.T01:intron 40.0%
! TGGGTGTCCATGAAACATTT+TGG - Chr5:88343381-88343400 MsG0580028907.01.T01:intron 40.0%
! TGTTAGCCTACGTAATTACC+TGG - Chr5:88345785-88345804 MsG0580028907.01.T01:five_prime_UTR 40.0%
!! ACAAAGTGTCGCAAAAGTAG+GGG + Chr5:88343049-88343068 None:intergenic 40.0%
!! CTGTTTCTGTGTGTTTGTGT+TGG + Chr5:88344756-88344775 None:intergenic 40.0%
AAATGAGAAGGAGAGGTCGA+AGG + Chr5:88342522-88342541 None:intergenic 45.0%
AACAGTCGGATCTTGGCAAT+AGG - Chr5:88345056-88345075 MsG0580028907.01.T01:intron 45.0%
AATGAGAAGGAGAGGTCGAA+GGG + Chr5:88342521-88342540 None:intergenic 45.0%
ACCAAACAGTGAGTGGGATT+TGG + Chr5:88345652-88345671 None:intergenic 45.0%
ACCTGTGATCAGCTCCTAAT+CGG + Chr5:88345557-88345576 None:intergenic 45.0%
AGAAAGAGCCAAGAATCCTC+CGG + Chr5:88344232-88344251 None:intergenic 45.0%
AGCTCACTTGGTTGACCTAA+GGG - Chr5:88343168-88343187 MsG0580028907.01.T01:intron 45.0%
ATTAGGAGCTGATCACAGGT+AGG - Chr5:88345557-88345576 MsG0580028907.01.T01:intron 45.0%
ATTGCAACATGCAAGAGTCG+GGG - Chr5:88342897-88342916 MsG0580028907.01.T01:intron 45.0%
ATTGCTCTTGTTGCCTTGAC+AGG - Chr5:88344127-88344146 MsG0580028907.01.T01:intron 45.0%
CAATCAATGAGCCTTGGTTG+TGG - Chr5:88343478-88343497 MsG0580028907.01.T01:intron 45.0%
CATCGAAACCAAACAGTGAG+TGG + Chr5:88345659-88345678 None:intergenic 45.0%
CATTGCAACATGCAAGAGTC+GGG - Chr5:88342896-88342915 MsG0580028907.01.T01:intron 45.0%
CCAAACAGTGAGTGGGATTT+GGG + Chr5:88345651-88345670 None:intergenic 45.0%
CCCATAGGTGTAGGGAAAAT+TGG - Chr5:88343361-88343380 MsG0580028907.01.T01:intron 45.0%
CTATAATGCGACCACAACCA+AGG + Chr5:88343492-88343511 None:intergenic 45.0%
CTCCTCACGACATCACTATT+GGG - Chr5:88343798-88343817 MsG0580028907.01.T01:intron 45.0%
CTCTCCTTCTCATTTCGGTT+CGG - Chr5:88342527-88342546 MsG0580028907.01.T01:three_prime_UTR 45.0%
CTTTCACGGTTAAGCACATC+AGG + Chr5:88343574-88343593 None:intergenic 45.0%
GCATCAATACCTCAGTTTGG+AGG + Chr5:88344840-88344859 None:intergenic 45.0%
GCATTTGATTCAGAGTCGCA+AGG + Chr5:88345282-88345301 None:intergenic 45.0%
GCTCTGGTGTATAAGCCATT+TGG - Chr5:88343820-88343839 MsG0580028907.01.T01:intron 45.0%
GGATCACAATCAATGAGCCT+TGG - Chr5:88343472-88343491 MsG0580028907.01.T01:intron 45.0%
GGTTGCAGTAACGATTGGAA+TGG - Chr5:88343419-88343438 MsG0580028907.01.T01:intron 45.0%
GTAACCGAACCGAAATGAGA+AGG + Chr5:88342534-88342553 None:intergenic 45.0%
GTGGCTATTCTGATAACTGC+AGG - Chr5:88344331-88344350 MsG0580028907.01.T01:intron 45.0%
TAAGGTAAGGAGTCCTGTCA+AGG + Chr5:88344143-88344162 None:intergenic 45.0%
TAGCTCACTTGGTTGACCTA+AGG - Chr5:88343167-88343186 MsG0580028907.01.T01:intron 45.0%
TCGACCTCTCCTTCTCATTT+CGG - Chr5:88342522-88342541 MsG0580028907.01.T01:three_prime_UTR 45.0%
TCGGGAATATAGGAGAGATG+AGG + Chr5:88342446-88342465 None:intergenic 45.0%
TCTAGATTGTGGTTGTGGAC+CGG - Chr5:88343536-88343555 MsG0580028907.01.T01:intron 45.0%
TTCGATCTGAACTGGAGAGA+TGG - Chr5:88342297-88342316 MsG0580028907.01.T01:three_prime_UTR 45.0%
TTGTTGGTCAAGTAGGCTAG+TGG + Chr5:88342965-88342984 None:intergenic 45.0%
! AGTGTGTGGTGTGTGTGTTT+TGG - Chr5:88344617-88344636 MsG0580028907.01.T01:intron 45.0%
! AGTTGTCTTTTGGACAACCG+TGG - Chr5:88344312-88344331 MsG0580028907.01.T01:intron 45.0%
! ATGTCGTGAGGAGGTGTAAT+GGG + Chr5:88343791-88343810 None:intergenic 45.0%
! CAACCAGAAGGAGAAGCATA+AGG + Chr5:88344161-88344180 None:intergenic 45.0%
! CACACACACCACACACTTTT+CGG + Chr5:88344614-88344633 None:intergenic 45.0%
! CACTCACTGTTTGGTTTCGA+TGG - Chr5:88345657-88345676 MsG0580028907.01.T01:intron 45.0%
! CAGAGTGGTTAGTTAGTCTG+TGG - Chr5:88343732-88343751 MsG0580028907.01.T01:intron 45.0%
! CCCAATTTTCCCTACACCTA+TGG + Chr5:88343365-88343384 None:intergenic 45.0%
! CCGAATAAGTTGGGAAATCC+AGG + Chr5:88342930-88342949 None:intergenic 45.0%
! TTGATAGCTAGCAAGAGCCT+TGG - Chr5:88345442-88345461 MsG0580028907.01.T01:intron 45.0%
!! CAAAGTGTCGCAAAAGTAGG+GGG + Chr5:88343048-88343067 None:intergenic 45.0%
!! CTGCATTGTTTTGCGACTGT+AGG - Chr5:88345194-88345213 MsG0580028907.01.T01:intron 45.0%
!! TTCATTTCTTTGGTGGTGGC+CGG - Chr5:88344210-88344229 MsG0580028907.01.T01:intron 45.0%
ACGACATCACTATTGGGCTC+TGG - Chr5:88343804-88343823 MsG0580028907.01.T01:intron 50.0%
AGCCCAATAGTGATGTCGTG+AGG + Chr5:88343803-88343822 None:intergenic 50.0%
CAAGTGCATGATTGGGGGTT+GGG - Chr5:88343144-88343163 MsG0580028907.01.T01:intron 50.0%
CCAATAGTGATGTCGTGAGG+AGG + Chr5:88343800-88343819 None:intergenic 50.0%
CCCAAATCCCACTCACTGTT+TGG - Chr5:88345648-88345667 MsG0580028907.01.T01:intron 50.0%
CCTCCTCACGACATCACTAT+TGG - Chr5:88343797-88343816 MsG0580028907.01.T01:intron 50.0%
CGAACCGAAATGAGAAGGAG+AGG + Chr5:88342529-88342548 None:intergenic 50.0%
CGCAGTCTAGATTGTGGTTG+TGG - Chr5:88343531-88343550 MsG0580028907.01.T01:intron 50.0%
CGGTGATGTCAACCGTTTGA+TGG + Chr5:88345164-88345183 None:intergenic 50.0%
GAAACTTAGGTCCACAGCAG+AGG - Chr5:88345216-88345235 MsG0580028907.01.T01:intron 50.0%
GTGCGAGTGTCTAACCATGT+CGG + Chr5:88344814-88344833 None:intergenic 50.0%
TCAAGTGCATGATTGGGGGT+TGG - Chr5:88343143-88343162 MsG0580028907.01.T01:intron 50.0%
TCCGATTAGGAGCTGATCAC+AGG - Chr5:88345553-88345572 MsG0580028907.01.T01:intron 50.0%
TGACGAGACCAGCGAAAACA+CGG + Chr5:88342490-88342509 None:intergenic 50.0%
! CATACACTGACTGTCCGACA+TGG - Chr5:88344797-88344816 MsG0580028907.01.T01:intron 50.0%
! GATGTCGTGAGGAGGTGTAA+TGG + Chr5:88343792-88343811 None:intergenic 50.0%
!! TGTTTTCGCTGGTCTCGTCA+AGG - Chr5:88342490-88342509 MsG0580028907.01.T01:three_prime_UTR 50.0%
AAGAGTCGGGGTTCCAATCC+TGG - Chr5:88342909-88342928 MsG0580028907.01.T01:intron 55.0%
CTACCACAGAACCTCTGCTG+TGG + Chr5:88345230-88345249 None:intergenic 55.0%
TCGCACACACCTCCAAACTG+AGG - Chr5:88344828-88344847 MsG0580028907.01.T01:intron 55.0%
TGTCGCAGCCCATAGGTGTA+GGG - Chr5:88343353-88343372 MsG0580028907.01.T01:intron 55.0%
! TACACTCGCCGTGTTTTCGC+TGG - Chr5:88342479-88342498 MsG0580028907.01.T01:three_prime_UTR 55.0%
!! ATTTCTTTGGTGGTGGCCGG+AGG - Chr5:88344213-88344232 MsG0580028907.01.T01:intron 55.0%
GGTCCACAGCAGAGGTTCTG+TGG - Chr5:88345224-88345243 MsG0580028907.01.T01:intron 60.0%
GTGTCGCAGCCCATAGGTGT+AGG - Chr5:88343352-88343371 MsG0580028907.01.T01:intron 60.0%
TGGGGGTTGGGTAGCTCACT+TGG - Chr5:88343156-88343175 MsG0580028907.01.T01:intron 60.0%
!! AACCTGGTGTCGCAGCCCAT+AGG - Chr5:88343346-88343365 MsG0580028907.01.T01:intron 60.0%
! CACCTATGGGCTGCGACACC+AGG + Chr5:88343351-88343370 None:intergenic 65.0%
! GGTGGTGGCCGGAGGATTCT+TGG - Chr5:88344221-88344240 MsG0580028907.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 88342220 88346036 88342220 ID=MsG0580028907.01;Name=MsG0580028907.01
Chr5 mRNA 88342220 88346036 88342220 ID=MsG0580028907.01.T01;Parent=MsG0580028907.01;Name=MsG0580028907.01.T01;_AED=0.49;_eAED=0.49;_QI=396|1|1|1|0|0|3|475|103
Chr5 exon 88342220 88342843 88342220 ID=MsG0580028907.01.T01:exon:25832;Parent=MsG0580028907.01.T01
Chr5 exon 88343904 88344138 88343904 ID=MsG0580028907.01.T01:exon:25831;Parent=MsG0580028907.01.T01
Chr5 exon 88345713 88346036 88345713 ID=MsG0580028907.01.T01:exon:25830;Parent=MsG0580028907.01.T01
Chr5 five_prime_UTR 88345713 88346036 88345713 ID=MsG0580028907.01.T01:five_prime_utr;Parent=MsG0580028907.01.T01
Chr5 five_prime_UTR 88344067 88344138 88344067 ID=MsG0580028907.01.T01:five_prime_utr;Parent=MsG0580028907.01.T01
Chr5 CDS 88343904 88344066 88343904 ID=MsG0580028907.01.T01:cds;Parent=MsG0580028907.01.T01
Chr5 CDS 88342695 88342843 88342695 ID=MsG0580028907.01.T01:cds;Parent=MsG0580028907.01.T01
Chr5 three_prime_UTR 88342220 88342694 88342220 ID=MsG0580028907.01.T01:three_prime_utr;Parent=MsG0580028907.01.T01
Gene Sequence

>MsG0580028907.01.T01

ATGCCATCATTGTCTCTCTTTTCATTTCTTTGGTGGTGGCCGGAGGATTCTTGGCTCTTTCTTTGCTTTAGTGACAGCATATATATTGGAGCATTATCAGTTGCCATATTTGCAATTTCAACAGTTGTCTTTTGGACAACCGTGGCTATTCTGATAACTGCAGGATGGGTTGGATTCTTTTGTACTGCATGGTTGATAGCTAGCAAGAGCCTTGGATTTGCAAAACACTCATTAAGCGTGAGTGGCTCTGCAATTTCAAATTATTCTGCTGCTTGGGGTAGCCGCAACCTTTCACACAAACATTCCGATTAG
Protein sequence

>MsG0580028907.01.T01

MPSLSLFSFLWWWPEDSWLFLCFSDSIYIGALSVAIFAISTVVFWTTVAILITAGWVGFFCTAWLIASKSLGFAKHSLSVSGSAISNYSAAWGSRNLSHKHSD*