AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042961.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042961.01.T03 MTR_8g027220 98.824 85 1 0 1 85 148 232 6.78e-54 167
MsG0880042961.01.T03 MTR_2g014990 48.810 84 41 1 2 85 136 217 1.63e-16 70.9
MsG0880042961.01.T03 MTR_4g088090 46.429 84 43 1 2 85 136 217 7.35e-16 69.3
MsG0880042961.01.T03 MTR_3g086980 51.163 86 34 2 2 83 139 220 1.22e-15 68.9
MsG0880042961.01.T03 MTR_8g089985 51.948 77 32 2 2 74 140 215 3.86e-15 67.4
MsG0880042961.01.T03 MTR_4g079350 42.857 84 46 1 2 85 136 217 2.23e-14 65.5
MsG0880042961.01.T03 MTR_2g090865 41.667 84 46 1 2 85 134 214 4.86e-13 61.6
MsG0880042961.01.T03 MTR_1g052475 50.725 69 27 2 2 64 138 205 8.01e-13 61.2
MsG0880042961.01.T03 MTR_2g075950 43.023 86 41 3 2 84 136 216 1.08e-12 60.8
MsG0880042961.01.T03 MTR_2g083860 56.000 50 22 0 2 51 136 185 7.51e-12 58.5
MsG0880042961.01.T03 MTR_7g117910 54.386 57 24 1 31 85 156 212 2.79e-11 57.0
MsG0880042961.01.T03 MTR_0262s0050 47.761 67 31 1 2 64 138 204 8.65e-11 55.8
MsG0880042961.01.T02 MTR_8g027220 98.980 98 1 0 1 98 135 232 5.69e-64 193
MsG0880042961.01.T02 MTR_2g014990 52.041 98 45 1 1 98 122 217 7.06e-24 90.9
MsG0880042961.01.T02 MTR_4g088090 50.000 98 47 1 1 98 122 217 2.66e-23 89.4
MsG0880042961.01.T02 MTR_4g079350 46.939 98 50 1 1 98 122 217 1.30e-21 84.7
MsG0880042961.01.T02 MTR_3g086980 51.000 100 41 2 1 96 125 220 3.82e-21 83.6
MsG0880042961.01.T02 MTR_8g089985 52.747 91 38 2 1 87 126 215 2.12e-20 82.0
MsG0880042961.01.T02 MTR_2g090865 44.898 98 51 1 1 98 120 214 1.41e-19 79.3
MsG0880042961.01.T02 MTR_2g075950 46.000 100 46 3 1 97 122 216 1.61e-18 76.6
MsG0880042961.01.T02 MTR_1g052475 51.807 83 33 2 1 77 124 205 5.88e-18 75.5
MsG0880042961.01.T02 MTR_2g083860 56.250 64 28 0 1 64 122 185 1.83e-17 73.9
MsG0880042961.01.T02 MTR_7g117910 45.000 100 37 2 1 98 129 212 2.06e-17 73.9
MsG0880042961.01.T02 MTR_2g005510 50.000 86 41 1 1 84 124 209 5.25e-17 72.8
MsG0880042961.01.T02 MTR_0262s0050 50.617 81 36 1 1 77 124 204 8.71e-17 72.4
MsG0880042961.01.T02 MTR_8g036220 42.157 102 52 2 1 96 125 225 1.49e-15 69.3
MsG0880042961.01.T02 MTR_4g064897 48.649 74 38 0 1 74 121 194 7.36e-15 67.0
MsG0880042961.01.T02 MTR_6g079550 37.624 101 53 2 1 97 121 215 1.36e-13 63.9
MsG0880042961.01.T02 MTR_1g078200 51.613 62 30 0 1 62 123 184 2.98e-13 63.2
MsG0880042961.01.T02 MTR_3g069510 53.226 62 29 0 1 62 121 182 6.41e-13 62.0
MsG0880042961.01.T02 MTR_7g051940 40.964 83 48 1 1 83 122 203 1.95e-12 60.8
MsG0880042961.01.T02 MTR_7g405790 38.542 96 58 1 1 96 124 218 4.44e-12 59.7
MsG0880042961.01.T01 MTR_8g027220 98.462 130 2 0 1 130 103 232 4.46e-89 258
MsG0880042961.01.T01 MTR_3g086980 56.061 132 50 2 1 128 93 220 1.91e-41 137
MsG0880042961.01.T01 MTR_8g089985 57.258 124 48 2 1 120 94 216 5.45e-41 136
MsG0880042961.01.T01 MTR_7g117910 54.545 132 42 2 1 130 97 212 6.16e-41 135
MsG0880042961.01.T01 MTR_1g052475 58.261 115 41 2 1 109 92 205 2.92e-39 131
MsG0880042961.01.T01 MTR_0262s0050 57.522 113 44 1 1 109 92 204 8.17e-38 127
MsG0880042961.01.T01 MTR_2g014990 50.000 130 63 1 1 130 90 217 8.28e-37 125
MsG0880042961.01.T01 MTR_4g088090 48.462 130 65 1 1 130 90 217 3.35e-36 123
MsG0880042961.01.T01 MTR_4g079350 46.923 130 67 1 1 130 90 217 1.24e-34 119
MsG0880042961.01.T01 MTR_4g064897 53.774 106 49 0 1 106 89 194 1.80e-32 114
MsG0880042961.01.T01 MTR_2g005510 51.695 118 55 1 1 116 92 209 1.89e-32 114
MsG0880042961.01.T01 MTR_2g075950 45.455 132 64 3 1 129 90 216 4.43e-32 113
MsG0880042961.01.T01 MTR_2g090865 44.615 130 69 1 1 130 88 214 8.41e-32 112
MsG0880042961.01.T01 MTR_8g036220 44.776 134 67 2 1 128 93 225 9.95e-32 112
MsG0880042961.01.T01 MTR_2g083860 53.125 96 45 0 1 96 90 185 1.14e-31 112
MsG0880042961.01.T01 MTR_3g069510 45.865 133 62 2 1 129 89 215 5.90e-30 107
MsG0880042961.01.T01 MTR_1g078200 48.936 94 48 0 1 94 91 184 3.78e-27 100
MsG0880042961.01.T01 MTR_8g031870 50.588 85 42 0 1 85 83 167 1.52e-25 95.5
MsG0880042961.01.T01 MTR_7g405790 38.281 128 78 1 1 128 92 218 1.80e-25 96.3
MsG0880042961.01.T01 MTR_8g031660 51.765 85 41 0 1 85 83 167 3.87e-25 95.1
MsG0880042961.01.T01 MTR_2g027660 45.918 98 53 0 1 98 83 180 6.09e-25 94.7
MsG0880042961.01.T01 MTR_6g079550 39.098 133 71 2 1 129 89 215 3.10e-24 92.8
MsG0880042961.01.T01 MTR_8g031680 49.412 85 43 0 1 85 83 167 3.64e-24 92.4
MsG0880042961.01.T01 MTR_6g021790 49.412 85 43 0 1 85 83 167 2.84e-23 90.5
MsG0880042961.01.T01 MTR_7g051940 36.719 128 77 2 1 128 90 213 4.13e-22 87.4
MsG0880042961.01.T01 MTR_8g031830 44.944 89 48 1 1 88 83 171 4.76e-21 84.3
MsG0880042961.01.T01 MTR_4g099470 33.333 114 76 0 1 114 61 174 5.37e-19 78.6
MsG0880042961.01.T01 MTR_2g005500 38.182 110 67 1 1 109 86 195 2.49e-18 77.4
MsG0880042961.01.T01 MTR_3g064390 38.462 104 59 1 1 104 87 185 7.32e-18 75.9
MsG0880042961.01.T01 MTR_5g076590 38.462 104 59 1 1 104 87 185 7.48e-18 75.9
MsG0880042961.01.T01 MTR_8g107070 42.708 96 55 0 1 96 91 186 1.17e-17 76.6
MsG0880042961.01.T01 MTR_1g094220 40.426 94 52 1 1 94 109 198 4.58e-17 73.9
MsG0880042961.01.T01 MTR_8g006970 34.783 115 74 1 1 114 99 213 5.02e-17 73.9
MsG0880042961.01.T01 MTR_3g087160 44.444 81 45 0 1 81 86 166 1.37e-16 72.8
MsG0880042961.01.T01 MTR_1g094220 41.304 92 50 1 1 92 109 196 1.76e-16 72.4
MsG0880042961.01.T01 MTR_1g094220 44.872 78 43 0 1 78 109 186 4.02e-16 71.6
MsG0880042961.01.T01 MTR_8g006970 42.353 85 49 0 1 85 85 169 4.53e-16 70.9
MsG0880042961.01.T01 MTR_7g081700 32.456 114 77 0 1 114 85 198 4.53e-16 71.2
MsG0880042961.01.T01 MTR_1g094220 44.872 78 43 0 1 78 109 186 5.11e-16 71.6
MsG0880042961.01.T01 MTR_5g013900 32.308 130 80 1 1 130 86 207 8.43e-16 70.9
MsG0880042961.01.T01 MTR_8g090215 43.210 81 46 0 1 81 86 166 1.85e-15 69.7
MsG0880042961.01.T01 MTR_8g103550 40.000 85 51 0 1 85 86 170 6.07e-15 68.2
MsG0880042961.01.T01 MTR_2g102060 35.238 105 62 1 1 105 87 185 8.51e-15 67.8
MsG0880042961.01.T01 MTR_4g098950 38.272 81 50 0 1 81 86 166 1.05e-14 67.8
MsG0880042961.01.T01 MTR_1g068740 38.372 86 52 1 1 85 92 177 2.90e-14 66.6
MsG0880042961.01.T01 MTR_7g100020 38.372 86 52 1 1 85 92 177 4.31e-14 66.2
MsG0880042961.01.T01 MTR_1g115325 38.372 86 52 1 1 85 92 177 5.40e-14 66.2
MsG0880042961.01.T01 MTR_4g063160 38.372 86 52 1 1 85 94 179 5.65e-14 65.9
MsG0880042961.01.T01 MTR_1g068730 37.209 86 53 1 1 85 92 177 9.60e-14 65.5
MsG0880042961.01.T01 MTR_2g005500 37.634 93 57 1 18 109 63 155 1.18e-12 61.6
MsG0880042961.01.T01 MTR_1g029450 40.230 87 50 2 1 85 93 179 4.69e-12 60.8
MsG0880042961.01.T01 MTR_8g093740 36.905 84 51 2 1 82 56 139 8.10e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042961.01.T03 AT1G01200 63.953 86 29 1 2 85 152 237 1.70e-28 102
MsG0880042961.01.T03 AT3G15060 48.193 83 41 1 2 84 136 216 1.44e-16 71.2
MsG0880042961.01.T03 AT4G18800 50.000 84 35 2 2 84 136 213 2.05e-16 70.9
MsG0880042961.01.T03 AT5G60860 46.988 83 42 1 2 84 136 216 6.78e-16 69.3
MsG0880042961.01.T03 AT1G28550 49.412 85 40 2 2 85 136 218 2.06e-15 68.2
MsG0880042961.01.T03 AT5G65270 51.351 74 28 2 2 69 140 211 6.22e-15 67.0
MsG0880042961.01.T03 AT2G33870 44.706 85 44 2 2 85 136 218 2.14e-14 65.5
MsG0880042961.01.T03 AT5G45750 45.238 84 41 2 2 84 136 215 5.39e-14 64.3
MsG0880042961.01.T03 AT3G12160 47.297 74 35 1 2 71 138 211 4.14e-13 62.0
MsG0880042961.01.T03 AT4G39990 49.412 85 36 4 2 83 140 220 4.37e-13 62.0
MsG0880042961.01.T03 AT5G47960 51.948 77 31 3 2 73 138 213 9.12e-13 61.2
MsG0880042961.01.T03 AT4G18430 42.857 84 44 3 2 84 136 216 1.40e-12 60.5
MsG0880042961.01.T03 AT1G16920 44.048 84 42 2 2 84 136 215 2.24e-12 60.1
MsG0880042961.01.T02 AT1G01200 64.356 101 33 2 1 98 137 237 1.57e-33 116
MsG0880042961.01.T02 AT3G15060 51.546 97 45 1 1 97 122 216 6.16e-24 90.9
MsG0880042961.01.T02 AT5G60860 49.485 97 47 1 1 97 122 216 9.86e-23 87.8
MsG0880042961.01.T02 AT1G28550 52.525 99 44 2 1 98 122 218 1.19e-22 87.8
MsG0880042961.01.T02 AT4G18800 52.041 98 40 2 1 97 122 213 2.38e-22 86.7
MsG0880042961.01.T02 AT5G65270 53.409 88 33 2 1 82 126 211 3.97e-22 86.3
MsG0880042961.01.T02 AT2G33870 48.485 99 48 2 1 98 122 218 1.74e-21 84.7
MsG0880042961.01.T02 AT5G45750 47.959 98 46 2 1 97 122 215 5.83e-20 80.5
MsG0880042961.01.T02 AT4G18430 46.939 98 48 3 1 97 122 216 1.11e-19 79.7
MsG0880042961.01.T02 AT4G39990 50.505 99 42 4 1 96 126 220 2.67e-19 79.0
MsG0880042961.01.T02 AT3G12160 51.111 90 36 2 1 84 124 211 3.51e-19 78.6
MsG0880042961.01.T02 AT5G47960 53.846 91 36 3 1 86 124 213 4.10e-19 78.6
MsG0880042961.01.T02 AT1G16920 46.939 98 47 2 1 97 122 215 3.33e-18 75.9
MsG0880042961.01.T02 AT1G09630 46.512 86 44 1 1 84 121 206 7.35e-17 72.4
MsG0880042961.01.T02 AT1G06400 41.837 98 52 2 1 97 122 215 9.06e-15 67.0
MsG0880042961.01.T02 AT1G07410 45.783 83 38 2 1 79 121 200 2.19e-14 65.9
MsG0880042961.01.T02 AT3G07410 40.206 97 57 1 1 97 121 216 3.79e-13 62.8
MsG0880042961.01.T02 AT5G47520 51.613 62 30 0 1 62 123 184 1.16e-12 61.6
MsG0880042961.01.T02 AT5G59150 53.333 60 28 0 1 60 70 129 1.27e-12 60.5
MsG0880042961.01.T02 AT2G43130 47.059 68 36 0 1 68 121 188 3.08e-12 60.1
MsG0880042961.01.T02 AT5G59150 53.333 60 28 0 1 60 121 180 3.16e-12 60.1
MsG0880042961.01.T02 AT3G46830 53.333 60 28 0 1 60 121 180 3.93e-12 60.1
MsG0880042961.01.T02 AT3G46830 53.333 60 28 0 1 60 121 180 3.93e-12 60.1
MsG0880042961.01.T02 AT1G05810 47.059 68 36 0 1 68 121 188 2.17e-11 58.2
MsG0880042961.01.T02 AT2G31680 45.588 68 37 0 1 68 121 188 2.38e-11 57.8
MsG0880042961.01.T02 AT1G05810 47.059 68 36 0 1 68 167 234 2.50e-11 58.2
MsG0880042961.01.T01 AT1G01200 68.421 133 39 2 1 130 105 237 1.48e-54 171
MsG0880042961.01.T01 AT5G65270 57.851 121 43 2 1 115 94 212 3.17e-43 142
MsG0880042961.01.T01 AT5G47960 60.976 123 42 3 1 118 92 213 3.95e-41 136
MsG0880042961.01.T01 AT3G12160 58.197 122 43 2 1 116 92 211 1.76e-40 134
MsG0880042961.01.T01 AT4G39990 54.198 131 53 4 1 128 94 220 3.98e-39 131
MsG0880042961.01.T01 AT3G15060 49.612 129 63 1 1 129 90 216 3.36e-36 123
MsG0880042961.01.T01 AT5G60860 48.837 129 64 1 1 129 90 216 7.32e-36 122
MsG0880042961.01.T01 AT1G28550 51.145 131 61 2 1 130 90 218 9.33e-36 122
MsG0880042961.01.T01 AT4G18800 50.000 130 58 2 1 129 90 213 1.21e-35 122
MsG0880042961.01.T01 AT2G33870 47.328 131 66 2 1 130 90 218 7.77e-34 117
MsG0880042961.01.T01 AT5G45750 46.923 130 64 2 1 129 90 215 7.38e-33 115
MsG0880042961.01.T01 AT4G18430 46.923 130 65 3 1 129 90 216 1.58e-32 114
MsG0880042961.01.T01 AT1G16920 46.154 130 65 2 1 129 90 215 3.98e-32 113
MsG0880042961.01.T01 AT1G09630 48.305 118 59 1 1 116 89 206 1.10e-31 112
MsG0880042961.01.T01 AT1G07410 50.435 115 50 2 1 111 89 200 3.46e-31 110
MsG0880042961.01.T01 AT5G59150 57.609 92 39 0 1 92 38 129 3.28e-30 107
MsG0880042961.01.T01 AT5G59150 57.609 92 39 0 1 92 89 180 1.33e-29 106
MsG0880042961.01.T01 AT3G46830 57.609 92 39 0 1 92 89 180 1.47e-29 106
MsG0880042961.01.T01 AT3G46830 57.609 92 39 0 1 92 89 180 1.47e-29 106
MsG0880042961.01.T01 AT1G06400 41.538 130 71 2 1 129 90 215 1.32e-28 104
MsG0880042961.01.T01 AT5G47520 47.872 94 49 0 1 94 91 184 1.27e-25 96.7
MsG0880042961.01.T01 AT4G17160 45.098 102 56 0 1 102 83 184 2.42e-25 95.5
MsG0880042961.01.T01 AT4G17170 45.918 98 53 0 1 98 83 180 3.14e-25 95.5
MsG0880042961.01.T01 AT4G35860 45.192 104 53 1 1 100 37 140 1.84e-24 92.4
MsG0880042961.01.T01 AT4G35860 45.192 104 53 1 1 100 83 186 7.57e-24 92.0
MsG0880042961.01.T01 AT3G07410 38.760 129 78 1 1 129 89 216 8.97e-24 91.7
MsG0880042961.01.T01 AT2G43130 43.000 100 57 0 1 100 89 188 1.02e-23 91.7
MsG0880042961.01.T01 AT1G05810 44.000 100 56 0 1 100 89 188 1.05e-23 91.7
MsG0880042961.01.T01 AT1G05810 44.000 100 56 0 1 100 135 234 1.93e-23 92.0
MsG0880042961.01.T01 AT2G31680 42.000 100 58 0 1 100 89 188 2.06e-23 90.9
MsG0880042961.01.T01 AT1G73640 45.652 92 50 0 1 92 90 181 8.90e-22 87.0
MsG0880042961.01.T01 AT3G54840 46.237 93 46 1 1 93 77 165 9.11e-21 82.8
MsG0880042961.01.T01 AT3G54840 46.237 93 46 1 1 93 111 199 1.31e-20 83.2
MsG0880042961.01.T01 AT4G19640 37.273 110 64 1 1 110 87 191 3.05e-20 82.4
MsG0880042961.01.T01 AT1G18200 43.478 92 52 0 1 92 90 181 3.29e-20 82.8
MsG0880042961.01.T01 AT3G54840 50.000 78 39 0 1 78 111 188 1.86e-19 80.1
MsG0880042961.01.T01 AT5G45130 40.909 88 52 0 1 88 87 174 2.10e-18 77.4
MsG0880042961.01.T01 AT5G46025 46.739 92 47 2 1 90 21 112 2.97e-18 74.7
MsG0880042961.01.T01 AT5G45130 40.909 88 52 0 1 88 95 182 3.93e-18 77.0
MsG0880042961.01.T01 AT5G10260 44.444 81 45 0 1 81 86 166 1.91e-17 75.1
MsG0880042961.01.T01 AT1G02130 34.545 110 71 1 1 109 85 194 4.64e-17 73.9
MsG0880042961.01.T01 AT5G47200 32.456 114 77 0 1 114 85 198 1.02e-16 73.2
MsG0880042961.01.T01 AT5G64990 43.210 81 46 0 1 81 84 164 2.12e-16 72.4
MsG0880042961.01.T01 AT5G64990 43.210 81 46 0 1 81 91 171 2.26e-16 72.4
MsG0880042961.01.T01 AT4G17530 32.456 114 77 0 1 114 85 198 2.66e-16 72.0
MsG0880042961.01.T01 AT2G44610 41.975 81 47 0 1 81 86 166 5.14e-16 71.2
MsG0880042961.01.T01 AT3G11730 40.000 85 51 0 1 85 85 169 6.50e-16 70.9
MsG0880042961.01.T01 AT3G09900 39.535 86 51 1 1 85 92 177 1.18e-14 67.8
MsG0880042961.01.T01 AT5G03520 38.372 86 52 1 1 85 82 167 1.45e-14 67.4
MsG0880042961.01.T01 AT5G03520 38.372 86 52 1 1 85 92 177 1.54e-14 67.4
MsG0880042961.01.T01 AT2G22290 40.741 81 48 0 1 81 86 166 4.88e-14 66.2
MsG0880042961.01.T01 AT3G46060 37.363 91 56 1 1 90 92 182 6.50e-14 65.9
MsG0880042961.01.T01 AT3G46060 37.363 91 56 1 1 90 92 182 6.50e-14 65.9
MsG0880042961.01.T01 AT3G46060 37.363 91 56 1 1 90 92 182 6.50e-14 65.9
MsG0880042961.01.T01 AT3G53610 38.372 86 52 1 1 85 92 177 6.92e-14 65.9
MsG0880042961.01.T01 AT3G53610 38.372 86 52 1 1 85 92 177 6.92e-14 65.9
MsG0880042961.01.T01 AT3G53610 38.372 86 52 1 1 85 92 177 6.92e-14 65.9
MsG0880042961.01.T01 AT5G59840 37.209 86 53 1 1 85 92 177 2.64e-13 64.3
MsG0880042961.01.T01 AT4G39890 36.585 82 51 1 1 81 86 167 5.66e-13 63.5
MsG0880042961.01.T01 AT4G08190 50.000 64 29 1 15 78 67 127 2.36e-12 60.1
MsG0880042961.01.T01 AT3G09910 39.048 105 52 3 1 93 89 193 8.82e-11 57.4
MsG0880042961.01.T01 AT3G09910 39.048 105 52 3 1 93 89 193 8.82e-11 57.4
MsG0880042961.01.T01 AT3G09910 39.048 105 52 3 1 93 89 193 8.82e-11 57.4

Find 23 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGATCATGTTGCTAAA+TGG 0.168189 8:-16754503 MsG0880042961.01.T01:CDS
TAATAGTGTAGTTTCTAAAA+AGG 0.249947 8:-16754280 MsG0880042961.01.T01:CDS
TCAGAGACTTCAGCTCTTAC+TGG 0.284192 8:-16754345 MsG0880042961.01.T01:CDS
GTGAAGGGGATTGCGCTAAA+AGG 0.290270 8:-16754240 MsG0880042961.01.T01:CDS
ATGATCAAATGATTGTCTTT+TGG 0.311811 8:+16754515 None:intergenic
TCTAAGATTGATGTAATTTC+AGG 0.313382 8:-16754216 MsG0880042961.01.T01:CDS
TGTAATTTCAGGTGCTGAAT+TGG 0.361003 8:-16754205 MsG0880042961.01.T01:CDS
ATTTGATCATGTTGCTAAAT+GGG 0.407497 8:-16754502 MsG0880042961.01.T01:CDS
TGAAGGGGATTGCGCTAAAA+GGG 0.524828 8:-16754239 MsG0880042961.01.T01:CDS
AGCTCTTACTGGTGTGAATG+TGG 0.537237 8:-16754334 MsG0880042961.01.T01:CDS
TGACCTTGTTGATTTGAGAA+TGG 0.538385 8:-16754418 MsG0880042961.01.T01:CDS
TCAATTGTGATCATGCTAGT+TGG 0.549084 8:-16754450 MsG0880042961.01.T01:CDS
TTGGAATGTGGTAATGTGAA+GGG 0.563064 8:-16754255 MsG0880042961.01.T01:CDS
TCATGTTGCTAAATGGGTTG+AGG 0.586597 8:-16754496 MsG0880042961.01.T01:CDS
CTTACTGGTGTGAATGTGGA+GGG 0.593992 8:-16754330 MsG0880042961.01.T01:CDS
TCTTACTGGTGTGAATGTGG+AGG 0.594853 8:-16754331 MsG0880042961.01.T01:CDS
AACTCAACTGCATCTTCAGT+AGG 0.619231 8:+16754393 None:intergenic
GTTGAGTTTGCAGAAGACCA+AGG 0.629515 8:-16754378 MsG0880042961.01.T01:CDS
TCTCTGAGAAGAATAAACCT+TGG 0.630408 8:+16754361 None:intergenic
TGGAATGTGGTAATGTGAAG+GGG 0.631602 8:-16754254 MsG0880042961.01.T01:CDS
ATTGGAATGTGGTAATGTGA+AGG 0.637056 8:-16754256 MsG0880042961.01.T01:CDS
ATCATGCTAGTTGGTAACAA+AGG 0.656634 8:-16754441 MsG0880042961.01.T01:CDS
GAACCATTCTCAAATCAACA+AGG 0.712150 8:+16754415 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAGTGTAGTTTCTAAAA+AGG - Chr8:16754418-16754437 MsG0880042961.01.T01:CDS 20.0%
! ATTTGATCATGTTGCTAAAT+GGG - Chr8:16754196-16754215 MsG0880042961.01.T01:CDS 25.0%
!! ATGATCAAATGATTGTCTTT+TGG + Chr8:16754186-16754205 None:intergenic 25.0%
!! TCTAAGATTGATGTAATTTC+AGG - Chr8:16754482-16754501 MsG0880042961.01.T01:CDS 25.0%
CATTTGATCATGTTGCTAAA+TGG - Chr8:16754195-16754214 MsG0880042961.01.T01:CDS 30.0%
! TGTAGTTTCTAAAAAGGCAT+TGG - Chr8:16754424-16754443 MsG0880042961.01.T01:CDS 30.0%
GAACCATTCTCAAATCAACA+AGG + Chr8:16754286-16754305 None:intergenic 35.0%
TCAATTGTGATCATGCTAGT+TGG - Chr8:16754248-16754267 MsG0880042961.01.T01:CDS 35.0%
! ATTGGAATGTGGTAATGTGA+AGG - Chr8:16754442-16754461 MsG0880042961.01.T01:CDS 35.0%
! TCTCTGAGAAGAATAAACCT+TGG + Chr8:16754340-16754359 None:intergenic 35.0%
! TTGGAATGTGGTAATGTGAA+GGG - Chr8:16754443-16754462 MsG0880042961.01.T01:CDS 35.0%
!! ATCATGCTAGTTGGTAACAA+AGG - Chr8:16754257-16754276 MsG0880042961.01.T01:CDS 35.0%
!! TCTAAAAAGGCATTGGAATG+TGG - Chr8:16754431-16754450 MsG0880042961.01.T01:CDS 35.0%
!! TGACCTTGTTGATTTGAGAA+TGG - Chr8:16754280-16754299 MsG0880042961.01.T01:CDS 35.0%
!! TGTAATTTCAGGTGCTGAAT+TGG - Chr8:16754493-16754512 MsG0880042961.01.T01:CDS 35.0%
AACTCAACTGCATCTTCAGT+AGG + Chr8:16754308-16754327 None:intergenic 40.0%
! TGGAATGTGGTAATGTGAAG+GGG - Chr8:16754444-16754463 MsG0880042961.01.T01:CDS 40.0%
!! TCATGTTGCTAAATGGGTTG+AGG - Chr8:16754202-16754221 MsG0880042961.01.T01:CDS 40.0%
AGCTCTTACTGGTGTGAATG+TGG - Chr8:16754364-16754383 MsG0880042961.01.T01:CDS 45.0%
CTTACTGGTGTGAATGTGGA+GGG - Chr8:16754368-16754387 MsG0880042961.01.T01:CDS 45.0%
GTTGAGTTTGCAGAAGACCA+AGG - Chr8:16754320-16754339 MsG0880042961.01.T01:CDS 45.0%
TCAGAGACTTCAGCTCTTAC+TGG - Chr8:16754353-16754372 MsG0880042961.01.T01:CDS 45.0%
TCTTACTGGTGTGAATGTGG+AGG - Chr8:16754367-16754386 MsG0880042961.01.T01:CDS 45.0%
TGAAGGGGATTGCGCTAAAA+GGG - Chr8:16754459-16754478 MsG0880042961.01.T01:CDS 45.0%
GTGAAGGGGATTGCGCTAAA+AGG - Chr8:16754458-16754477 MsG0880042961.01.T01:CDS 50.0%
Chromosome Type Strat End Strand Name
Chr8 gene 16754164 16754556 16754164 ID=MsG0880042961.01;Name=MsG0880042961.01
Chr8 mRNA 16754164 16754556 16754164 ID=MsG0880042961.01.T01;Parent=MsG0880042961.01;Name=MsG0880042961.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|130
Chr8 exon 16754164 16754556 16754164 ID=MsG0880042961.01.T01:exon:3253;Parent=MsG0880042961.01.T01
Chr8 CDS 16754164 16754556 16754164 ID=MsG0880042961.01.T01:cds;Parent=MsG0880042961.01.T01
Chr8 mRNA 16754164 16754460 16754164 ID=MsG0880042961.01.T02;Parent=MsG0880042961.01;Name=MsG0880042961.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|98
Chr8 exon 16754164 16754460 16754164 ID=MsG0880042961.01.T02:exon:3254;Parent=MsG0880042961.01.T02
Chr8 CDS 16754164 16754460 16754164 ID=MsG0880042961.01.T02:cds;Parent=MsG0880042961.01.T02
Chr8 mRNA 16754164 16754421 16754164 ID=MsG0880042961.01.T03;Parent=MsG0880042961.01;Name=MsG0880042961.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|85
Chr8 exon 16754164 16754421 16754164 ID=MsG0880042961.01.T03:exon:3255;Parent=MsG0880042961.01.T03
Chr8 CDS 16754164 16754421 16754164 ID=MsG0880042961.01.T03:cds;Parent=MsG0880042961.01.T03
Chr8 mRNA 16754310 16754339 16754310 ID=MsG0880042961.01.T04;Parent=MsG0880042961.01;Name=MsG0880042961.01.T04;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|9
Chr8 exon 16754310 16754339 16754310 ID=MsG0880042961.01.T04:exon:3256;Parent=MsG0880042961.01.T04
Chr8 CDS 16754310 16754339 16754310 ID=MsG0880042961.01.T04:cds;Parent=MsG0880042961.01.T04
Gene Sequence

>MsG0880042961.01.T03

ATGGTTCCTACTGAAGATGCAGTTGAGTTTGCAGAAGACCAAGGTTTATTCTTCTCAGAGACTTCAGCTCTTACTGGTGTGAATGTGGAGGGTGCATTTATCAAATTGCTAGAAGAGATTAATAGTGTAGTTTCTAAAAAGGCATTGGAATGTGGTAATGTGAAGGGGATTGCGCTAAAAGGGTCTAAGATTGATGTAATTTCAGGTGCTGAATTGGAAATTAGTGAGATAAAGAAGCTGTCTTCATGCTCTTGTTGA

>MsG0880042961.01.T02

ATGCTAGTTGGTAACAAAGGTGACCTTGTTGATTTGAGAATGGTTCCTACTGAAGATGCAGTTGAGTTTGCAGAAGACCAAGGTTTATTCTTCTCAGAGACTTCAGCTCTTACTGGTGTGAATGTGGAGGGTGCATTTATCAAATTGCTAGAAGAGATTAATAGTGTAGTTTCTAAAAAGGCATTGGAATGTGGTAATGTGAAGGGGATTGCGCTAAAAGGGTCTAAGATTGATGTAATTTCAGGTGCTGAATTGGAAATTAGTGAGATAAAGAAGCTGTCTTCATGCTCTTGTTGA

>MsG0880042961.01.T01

ATGCTAGTATATGACATAACCAAAAGACAATCATTTGATCATGTTGCTAAATGGGTTGAGGAACGTAGAGCACATGCAGATAACTCAATTGTGATCATGCTAGTTGGTAACAAAGGTGACCTTGTTGATTTGAGAATGGTTCCTACTGAAGATGCAGTTGAGTTTGCAGAAGACCAAGGTTTATTCTTCTCAGAGACTTCAGCTCTTACTGGTGTGAATGTGGAGGGTGCATTTATCAAATTGCTAGAAGAGATTAATAGTGTAGTTTCTAAAAAGGCATTGGAATGTGGTAATGTGAAGGGGATTGCGCTAAAAGGGTCTAAGATTGATGTAATTTCAGGTGCTGAATTGGAAATTAGTGAGATAAAGAAGCTGTCTTCATGCTCTTGTTGA

>MsG0880042961.01.T04

ATGTGGAGGGTGCATTTATCAAATTGCTAG

Protein sequence

>MsG0880042961.01.T03

MVPTEDAVEFAEDQGLFFSETSALTGVNVEGAFIKLLEEINSVVSKKALECGNVKGIALKGSKIDVISGAELEISEIKKLSSCSC*

>MsG0880042961.01.T02

MLVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGVNVEGAFIKLLEEINSVVSKKALECGNVKGIALKGSKIDVISGAELEISEIKKLSSCSC*

>MsG0880042961.01.T01

MLVYDITKRQSFDHVAKWVEERRAHADNSIVIMLVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGVNVEGAFIKLLEEINSVVSKKALECGNVKGIALKGSKIDVISGAELEISEIKKLSSCSC*

>MsG0880042961.01.T04

MWRVHLSNC*