AlfalfaGEDB | MsG0380014734.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014734.01

KEGG: K15401
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014734.01.T01	XP_024635808.1	98.065	465	9	0	1	465	60	524	0	947

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014734.01.T01	P48422	75.93	457	106	3	1	457	56	508	0	723

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014734.01.T01	A0A396ISX1	98.065	465	9	0	1	465	60	524	0.0	947

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048509.01	MsG0380014734.01	0.837457	5.140215e-57	6.681133e-54
MsG0080048633.01	MsG0380014734.01	0.826048	3.358823e-54	3.115260e-51
MsG0080048652.01	MsG0380014734.01	0.834266	3.310783e-56	3.908943e-53
MsG0180000367.01	MsG0380014734.01	0.810120	1.349592e-50	8.067802e-48
MsG0180001079.01	MsG0380014734.01	0.835222	1.902542e-56	2.311691e-53
MsG0180002808.01	MsG0380014734.01	0.857065	2.103711e-62	5.127237e-59
MsG0180003375.01	MsG0380014734.01	0.823489	1.347786e-53	1.162185e-50
MsG0180003955.01	MsG0380014734.01	0.848308	6.659037e-60	1.216934e-56
MsG0180005054.01	MsG0380014734.01	0.815074	1.113726e-51	7.602211e-49
MsG0180005096.01	MsG0380014734.01	0.806089	9.745181e-50	5.242500e-47

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0380012606.01	MsG0380014734.01	PPI
MsG0380014734.01	MsG0180005039.01	PPI
MsG0380014734.01	MsG0380012604.01	PPI
MsG0380014734.01	MsG0380012607.01	PPI
MsG0580024955.01	MsG0380014734.01	PPI
MsG0880043147.01	MsG0380014734.01	PPI

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014734.01.T01	MTR_3g463060	94.624	465	12	1	1	465	59	510	0.0	907
MsG0380014734.01.T01	MTR_5g070010	76.906	459	104	1	1	459	54	510	0.0	751
MsG0380014734.01.T01	MTR_8g098435	65.451	466	143	4	1	459	53	507	0.0	612
MsG0380014734.01.T01	MTR_8g030590	64.043	470	150	6	1	460	53	513	0.0	606
MsG0380014734.01.T01	MTR_1g037560	46.804	438	217	5	31	457	111	543	1.33e-138	409
MsG0380014734.01.T01	MTR_1g037550	46.188	446	219	6	33	461	113	554	1.52e-137	407
MsG0380014734.01.T01	MTR_4g075110	46.560	436	216	5	33	457	120	549	3.05e-136	404
MsG0380014734.01.T01	MTR_7g096340	39.951	408	219	4	33	432	86	475	6.22e-110	334
MsG0380014734.01.T01	MTR_4g119660	39.746	473	239	11	15	457	59	515	6.32e-109	332
MsG0380014734.01.T01	MTR_5g019140	39.746	473	239	11	15	457	74	530	3.30e-108	331

Showing 1 to 10 of 249 entries

Previous1 2 3 4 5…25Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014734.01.T01	AT5G58860	75.930	457	106	3	1	457	56	508	0.0	723
MsG0380014734.01.T01	AT4G00360	63.191	470	155	4	1	460	53	514	0.0	602
MsG0380014734.01.T01	AT1G63710	62.076	472	159	5	1	463	53	513	0.0	602
MsG0380014734.01.T01	AT2G45970	63.931	463	152	4	6	459	56	512	0.0	597
MsG0380014734.01.T01	AT1G01600	62.055	477	161	5	1	465	53	521	0.0	591
MsG0380014734.01.T01	AT5G08250	48.307	443	207	7	32	461	49	482	5.46e-143	419
MsG0380014734.01.T01	AT5G08250	48.307	443	207	7	32	461	111	544	1.12e-142	420
MsG0380014734.01.T01	AT5G23190	47.273	440	217	4	32	461	110	544	5.28e-141	416
MsG0380014734.01.T01	AT1G13150	42.630	441	235	5	33	461	87	521	7.99e-123	368
MsG0380014734.01.T01	AT3G26125	42.411	448	234	5	33	461	94	536	1.32e-118	358

Showing 1 to 10 of 217 entries

Previous1 2 3 4 5…22Next

Find 120 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGGTTATAAGTTTG+TGG	0.439754	3:+58974419	MsG0380014734.01.T01:CDS
AACATTTGTGGACTCACTTT+TGG	0.292025	3:+58973658	MsG0380014734.01.T01:CDS
AACGAGCCATGGCTTGACGA+AGG	0.607881	3:-58973528	None:intergenic
AAGAAGGTCTTGTAAATCAA+CGG	0.596913	3:-58973617	None:intergenic
AAGGGGTTATCTGGAAGATC+CGG	0.496441	3:-58973703	None:intergenic
AAGTGTTTGAACCGCCGGTT+TGG	0.490379	3:-58973270	None:intergenic
AATCAAAAGAAAGAGAAAAG+GGG	0.670364	3:-58973720	None:intergenic
AATGAAGAGTGTATGGGGTG+AGG	0.499027	3:+58974329	MsG0380014734.01.T01:CDS
AATTATCGAACCGGGTTCGG+AGG	0.544072	3:-58973381	None:intergenic
ACAAACTTATAACCATCTTT+TGG	0.345798	3:-58974417	None:intergenic

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTATCTAAAAGCTGCAT+TGG	+	Chr3:58974176-58974195	MsG0380014734.01.T01:CDS	30.0%
CAAAAGTTAACCGCAAAAGA+AGG	-	Chr3:58973636-58973655	None:intergenic	35.0%
CACCAAAATCTAGAAACTTC+TGG	-	Chr3:58973801-58973820	None:intergenic	35.0%
CAGCAACAGATTTCATTTGA+AGG	-	Chr3:58974491-58974510	None:intergenic	35.0%
GGATTGCATGGAATTTAAAC+CGG	+	Chr3:58974350-58974369	MsG0380014734.01.T01:CDS	35.0%
TCCTAAAAGATCATGGAAAG+CGG	-	Chr3:58973431-58973450	None:intergenic	35.0%
TGAACCGAACCATAAAAAAC+CGG	+	Chr3:58973554-58973573	MsG0380014734.01.T01:CDS	35.0%
TTTCTGTTGAACCTTATGAC+CGG	-	Chr3:58974550-58974569	None:intergenic	35.0%
ACCTCAAACCTAAACCAAAC+CGG	+	Chr3:58973256-58973275	MsG0380014734.01.T01:CDS	40.0%
ATTACCCAAAAGGACCAACA+TGG	+	Chr3:58973401-58973420	MsG0380014734.01.T01:CDS	40.0%

Showing 1 to 10 of 159 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	58973253	58974650	58973253	ID=MsG0380014734.01;Name=MsG0380014734.01
Chr3	mRNA	58973253	58974650	58973253	ID=MsG0380014734.01.T01;Parent=MsG0380014734.01;Name=MsG0380014734.01.T01;_AED=0.27;_eAED=0.27;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|465
Chr3	exon	58973253	58974650	58973253	ID=MsG0380014734.01.T01:exon:11444;Parent=MsG0380014734.01.T01
Chr3	CDS	58973253	58974650	58973253	ID=MsG0380014734.01.T01:cds;Parent=MsG0380014734.01.T01

Gene Sequence

>MsG0380014734.01.T01

ATGACCTCAAACCTAAACCAAACCGGCGGTTCAAACACTTACCAAACATGCATCCTACCTTTCCCATTCTTAGCCCGTAAACAAGGCTTCTACACGGTCACAAGCCACCCAAAAAACATCGAACATATCCTCCGAACCCGGTTCGATAATTACCCAAAAGGACCAACATGGCAAACCGCTTTCCATGATCTTTTAGGACACGGAATCTTCAATAGTGATGGTGACACGTGGCTGGTCCAACGTAAAACCGCTGCACTCGAATTCACAACCCGAACCCTTCGTCAAGCCATGGCTCGTTGGGTGAACCGAACCATAAAAAACCGGTTGTGGTGCATTTTAGACAAAGCGGTAAAAGAAAAAGTTACCGTTGATTTACAAGACCTTCTTTTGCGGTTAACTTTTGATAACATTTGTGGACTCACTTTTGGTAAAGATCCGGAGACTCTTTCTCCGGATCTTCCAGATAACCCCTTTTCTCTTTCTTTTGATTACGCCACTGAAGCTACATTGCAAAGACTACTTTACCCTGGATTCTTTTGGAGGATCCAGAAGTTTCTAGATTTTGGTGCTGAGAAAAAATTGAGAGAGAGTTTAAATGTTGTTGAAAATTACATGAAGGACGCCGTTTCGGCTCGTGAGAAATCCCCCTCGGATGATCTTTTATCGCGCTTTTTGAAGAAGCGCGACGGCGATGGAAAACCGTTTGATGCCGGAAAACTGAGACACATTGCATTGAATTTTGTTCTAGCCGGGAGAGATACTTCATCTGTGGCATTGAGCTGGTTTTTCTGGCTTGTCATGAATCATCCTAGCGTGGAGGAGAAGATTCTAGCAGAGTTAACTGTGGTTTTGGCTGAAACTCGCGGTGGTGATTCTCGCCGGTGGACGGAGGAAGCTGTGGATTTTGAGGAAGCAGAGAAGCTTGTTTATCTAAAAGCTGCATTGGCTGAGACACTGAGACTATATCCTTCTGTGCCGGAGGATTTCAAATATGCCGTCGACGACGATGTTTTACCGGACGGAACGGTGGTTCCGGCGGGTTCAACGGTGACATATTCGATATATTCAGTTGGAAGAATGAAGAGTGTATGGGGTGAGGATTGCATGGAATTTAAACCGGACCGGTGGTTATCAGTTCATGAAGGTCGAACCCGGTTTGAACCGCCAAAAGATGGTTATAAGTTTGTGGCTTTTAATGCTGGACCGAGGACTTGTTTAGGGAAGGATTTGGCTTACCTTCAAATGAAATCTGTTGCTGCTGCTGTTTTGATTCGTTACCGGCTTTTACCGGTTCCCGGTCATAAGGTTCAACAGAAAATGTCTCTTACACTTTTTATGAAGTATGGGTTACGTGTATTCTTGTGTCCACGTCAGCTTCAGCAACCCATCTCTGCATAG

Protein sequence

>MsG0380014734.01.T01

MTSNLNQTGGSNTYQTCILPFPFLARKQGFYTVTSHPKNIEHILRTRFDNYPKGPTWQTAFHDLLGHGIFNSDGDTWLVQRKTAALEFTTRTLRQAMARWVNRTIKNRLWCILDKAVKEKVTVDLQDLLLRLTFDNICGLTFGKDPETLSPDLPDNPFSLSFDYATEATLQRLLYPGFFWRIQKFLDFGAEKKLRESLNVVENYMKDAVSAREKSPSDDLLSRFLKKRDGDGKPFDAGKLRHIALNFVLAGRDTSSVALSWFFWLVMNHPSVEEKILAELTVVLAETRGGDSRRWTEEAVDFEEAEKLVYLKAALAETLRLYPSVPEDFKYAVDDDVLPDGTVVPAGSTVTYSIYSVGRMKSVWGEDCMEFKPDRWLSVHEGRTRFEPPKDGYKFVAFNAGPRTCLGKDLAYLQMKSVAAAVLIRYRLLPVPGHKVQQKMSLTLFMKYGLRVFLCPRQLQQPISA*