AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029760.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029760.01.T01 MTR_5g092080 86.228 334 23 2 1 311 1 334 0.0 562
MsG0580029760.01.T01 MTR_5g092080 85.460 337 23 3 1 311 1 337 0.0 556
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029760.01.T01 AT3G47860 61.162 327 91 7 11 311 37 353 1.24e-128 371

Find 57 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAATTATGCTCTTGTTTC+TGG 0.024981 5:+101642973 MsG0580029760.01.T01:CDS
AAAACTTACCTTGCAGATTA+TGG 0.223001 5:+101643839 MsG0580029760.01.T01:CDS
TCAGTTCAAGATCAGGAAAT+TGG 0.260295 5:-101643970 None:intergenic
TTTGACCCTATCAGATATTC+AGG 0.279436 5:+101642440 MsG0580029760.01.T01:CDS
GAGTGCAATGACAGTCTTCT+TGG 0.317907 5:-101642511 None:intergenic
ATTTATCTCTCCAGCAAATC+AGG 0.333389 5:+101641380 MsG0580029760.01.T01:CDS
TTGTATTTCTCTATAAATTC+AGG 0.336114 5:-101643818 None:intergenic
CATCTTCCTGAATATCTGAT+AGG 0.337240 5:-101642446 None:intergenic
TCTGATAGGGTCAAAATTCT+TGG 0.339639 5:-101642432 None:intergenic
CATAGCTGCCAGTTTACTAT+TGG 0.341261 5:-101643912 None:intergenic
ACAATACAAACCTGATTTGC+TGG 0.354372 5:-101641390 None:intergenic
TTCACTTGATCTTTCAAGTA+AGG 0.357987 5:+101641314 MsG0580029760.01.T01:CDS
ATGTCTTTCACAAGAAGATT+TGG 0.359868 5:+101642834 MsG0580029760.01.T01:CDS
AACACAATCATTAAAATTCA+AGG 0.367727 5:-101644183 None:intergenic
GTTAGTGCCTGTTGCATCCC+TGG 0.384685 5:-101643944 None:intergenic
TTCTCTATAAATTCAGGTCC+AGG 0.399668 5:-101643812 None:intergenic
AGAGCTTAGGTGATGCTCTT+AGG 0.401177 5:-101641147 None:intergenic
AGTAATGTCCAATAGTAAAC+TGG 0.423649 5:+101643904 MsG0580029760.01.T01:CDS
TCACTGGACTCATTCTCAAA+TGG 0.439527 5:-101642371 None:intergenic
TGCTCTTGTTTCTGGAGCTA+AGG 0.441426 5:+101642981 MsG0580029760.01.T01:CDS
ATAAATTCAGGTCCAGGGTT+AGG 0.446321 5:-101643806 None:intergenic
GGTGTATCTTTAATTTCGCT+TGG 0.461443 5:-101643869 None:intergenic
TCAGTAGCAATCACATCATA+AGG 0.465892 5:-101642946 None:intergenic
ATCACATCATAAGGCTCCTT+GGG 0.467344 5:-101642937 None:intergenic
CTATCAGATATTCAGGAAGA+TGG 0.471288 5:+101642447 MsG0580029760.01.T01:CDS
GTCCATGCCAGGGATGCAAC+AGG 0.473508 5:+101643937 MsG0580029760.01.T01:CDS
AATCACATCATAAGGCTCCT+TGG 0.473774 5:-101642938 None:intergenic
TAAGAAGAAGTACAGAGCTT+AGG 0.479385 5:-101641160 None:intergenic
TTGGGAATGAACGGCAATGT+TGG 0.490083 5:-101642919 None:intergenic
GAGCCCTTCAGTTCAAGATC+AGG 0.499745 5:-101643977 None:intergenic
AACATTGCCGTTCATTCCCA+AGG 0.502752 5:+101642921 MsG0580029760.01.T01:CDS
GACTGTCATTGCACTCAGGC+AGG 0.506413 5:+101642518 MsG0580029760.01.T01:CDS
GCAGCTATGATGTCCATGCC+AGG 0.511229 5:+101643926 MsG0580029760.01.T01:CDS
ATTTCCTGATCTTGAACTGA+AGG 0.514630 5:+101643973 MsG0580029760.01.T01:CDS
TCTCTATAAATTCAGGTCCA+GGG 0.519094 5:-101643811 None:intergenic
ATCTTCCTGAATATCTGATA+GGG 0.534452 5:-101642445 None:intergenic
CTTATCCTCTCATTCATCAA+AGG 0.536489 5:+101641179 MsG0580029760.01.T01:CDS
TGCTGGAGAGATAAATATCA+AGG 0.541440 5:-101641373 None:intergenic
GACATTACTTCACAATCTTG+AGG 0.543352 5:-101643890 None:intergenic
TTTCACTGGCAATAGCAAGC+TGG 0.550592 5:-101642334 None:intergenic
TGCCTGTTGCATCCCTGGCA+TGG 0.552579 5:-101643939 None:intergenic
TATAACTGGCATTAGGGGAA+GGG 0.559959 5:+101642807 MsG0580029760.01.T01:intron
TGGTACCTTTGATGAATGAG+AGG 0.565747 5:-101641184 None:intergenic
TTTCCTGATCTTGAACTGAA+GGG 0.583532 5:+101643974 MsG0580029760.01.T01:CDS
GTTTCAAATACACTTGTGAG+TGG 0.612175 5:-101644013 None:intergenic
TAAGGCTCCTTGGGAATGAA+CGG 0.612716 5:-101642928 None:intergenic
TGAGACACAACTTGAGACGC+AGG 0.613938 5:+101642864 MsG0580029760.01.T01:CDS
AGAAGACTGTCATTGCACTC+AGG 0.620753 5:+101642514 MsG0580029760.01.T01:CDS
GAGACGCAGGAGATGATCAA+AGG 0.621662 5:+101642877 MsG0580029760.01.T01:CDS
GATTATAGCCATAATCTGCA+AGG 0.627467 5:-101643847 None:intergenic
TACTCAAGGACACCTAACCC+TGG 0.635374 5:+101643794 MsG0580029760.01.T01:CDS
GAAAATCTTATGATGATGAG+AGG 0.636432 5:+101642401 MsG0580029760.01.T01:CDS
AAATTGAGAAAGCAAAGTCA+TGG 0.636574 5:+101641114 MsG0580029760.01.T01:exon
CAGCTATGATGTCCATGCCA+GGG 0.657155 5:+101643927 MsG0580029760.01.T01:CDS
CAATATTACAGATATACTCA+AGG 0.664599 5:+101643780 MsG0580029760.01.T01:intron
TGAACGGCAATGTTGGAAAG+CGG 0.667583 5:-101642912 None:intergenic
GAAGTTGCTTCACTCAAACG+CGG 0.736177 5:+101642473 MsG0580029760.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTTAAATTATTTATTAG+TGG + Chr5:101643685-101643704 MsG0580029760.01.T01:intron 10.0%
!! TTGTAACTTTAATACATTTA+TGG - Chr5:101641647-101641666 None:intergenic 15.0%
!!! AAATTTTACTTCATCTATTT+TGG + Chr5:101641924-101641943 MsG0580029760.01.T01:intron 15.0%
!!! AATTTGCTTATAATTCATTT+CGG - Chr5:101641909-101641928 None:intergenic 15.0%
!!! AGGCAATAATTTTTTTTTAT+TGG + Chr5:101642018-101642037 MsG0580029760.01.T01:intron 15.0%
!!! TATACAGATTTTAATTATAG+TGG + Chr5:101641489-101641508 MsG0580029760.01.T01:intron 15.0%
!!! TTCTTCTAAATTTTAATTGA+TGG + Chr5:101643338-101643357 MsG0580029760.01.T01:intron 15.0%
!! AACACAATCATTAAAATTCA+AGG - Chr5:101644186-101644205 None:intergenic 20.0%
!! AATAAATATAGTCTGTGTTT+AGG + Chr5:101642551-101642570 MsG0580029760.01.T01:intron 20.0%
!! AGTATATAAATGACATTTCA+GGG + Chr5:101642710-101642729 MsG0580029760.01.T01:intron 20.0%
!! ATATCTGTAATATTGATCAA+GGG - Chr5:101643775-101643794 None:intergenic 20.0%
!! GTTACAACAATAATTGATAA+TGG - Chr5:101641243-101641262 None:intergenic 20.0%
!! TATATCTGTAATATTGATCA+AGG - Chr5:101643776-101643795 None:intergenic 20.0%
!! TTGTATTTCTCTATAAATTC+AGG - Chr5:101643821-101643840 None:intergenic 20.0%
!!! TAAATTTTAATTGATGGCAA+TGG + Chr5:101643344-101643363 MsG0580029760.01.T01:intron 20.0%
!!! TTTTTTTTATTGGATTGCAT+AGG + Chr5:101642028-101642047 MsG0580029760.01.T01:intron 20.0%
! AAAATAAAGAGAGTTGAGTT+TGG - Chr5:101641207-101641226 None:intergenic 25.0%
! AAATCCACAGAAAAACATAA+TGG - Chr5:101641868-101641887 None:intergenic 25.0%
! AACTAGTATATGTGTTAACT+TGG - Chr5:101643556-101643575 None:intergenic 25.0%
! AATAAGCTGAAAACAGATTA+TGG - Chr5:101643146-101643165 None:intergenic 25.0%
! AATATTATGAATTACGACAC+CGG - Chr5:101643733-101643752 None:intergenic 25.0%
! CAATATTACAGATATACTCA+AGG + Chr5:101643780-101643799 MsG0580029760.01.T01:intron 25.0%
! CATATTAATATCAAGAAGCA+TGG - Chr5:101642690-101642709 None:intergenic 25.0%
! GAACAATGTTAAGTTAACAA+GGG - Chr5:101642593-101642612 None:intergenic 25.0%
! GAGTATATAAATGACATTTC+AGG + Chr5:101642709-101642728 MsG0580029760.01.T01:intron 25.0%
! GTATTAGTTATGACTTATGA+AGG + Chr5:101641988-101642007 MsG0580029760.01.T01:intron 25.0%
! TAATTGAATGTAATATGCGT+TGG - Chr5:101643658-101643677 None:intergenic 25.0%
! TACACATGTTAAGAAAAAGT+AGG - Chr5:101642067-101642086 None:intergenic 25.0%
! TAGTAAAATTCTTAGAGTTG+TGG - Chr5:101641447-101641466 None:intergenic 25.0%
! TATATGATTCCAAAATCACA+TGG + Chr5:101641531-101641550 MsG0580029760.01.T01:intron 25.0%
! TGAACAATGTTAAGTTAACA+AGG - Chr5:101642594-101642613 None:intergenic 25.0%
! TGACTTATGAAGGTTAATTT+AGG + Chr5:101641998-101642017 MsG0580029760.01.T01:intron 25.0%
!! AATCATGTCTTGATAATTTG+TGG + Chr5:101643485-101643504 MsG0580029760.01.T01:intron 25.0%
!!! TCTTATGCTTGTAGTTTTAT+GGG - Chr5:101641739-101641758 None:intergenic 25.0%
AAAACTTACCTTGCAGATTA+TGG + Chr5:101643839-101643858 MsG0580029760.01.T01:CDS 30.0%
AAATAGATTCTATGCACATG+TGG - Chr5:101642653-101642672 None:intergenic 30.0%
AAATTGAGAAAGCAAAGTCA+TGG + Chr5:101641114-101641133 MsG0580029760.01.T01:exon 30.0%
AGTAATGTCCAATAGTAAAC+TGG + Chr5:101643904-101643923 MsG0580029760.01.T01:CDS 30.0%
AGTTAACAAGGGAAATAAGT+TGG - Chr5:101642582-101642601 None:intergenic 30.0%
ATCTTCCTGAATATCTGATA+GGG - Chr5:101642448-101642467 None:intergenic 30.0%
ATGTCTTTCACAAGAAGATT+TGG + Chr5:101642834-101642853 MsG0580029760.01.T01:CDS 30.0%
CACTCTTTAATATGACCATA+TGG + Chr5:101642145-101642164 MsG0580029760.01.T01:intron 30.0%
CATTTGTAAGAACTTCCATA+TGG - Chr5:101642163-101642182 None:intergenic 30.0%
TAATAGCTATGAGTTAGCAA+GGG + Chr5:101643430-101643449 MsG0580029760.01.T01:intron 30.0%
TTAATAGCTATGAGTTAGCA+AGG + Chr5:101643429-101643448 MsG0580029760.01.T01:intron 30.0%
TTGAAGTTTCGATACATTCA+AGG + Chr5:101641776-101641795 MsG0580029760.01.T01:intron 30.0%
TTGCTTATAATTCATTTCGG+AGG - Chr5:101641906-101641925 None:intergenic 30.0%
TTGCTTATATTTCAGTCTAG+AGG + Chr5:101642100-101642119 MsG0580029760.01.T01:intron 30.0%
! CTAGAGGAAGTAGATATTTT+GGG + Chr5:101642116-101642135 MsG0580029760.01.T01:intron 30.0%
! CTGACTAAACATGTTTTATC+TGG + Chr5:101641339-101641358 MsG0580029760.01.T01:CDS 30.0%
! GAAAATCTTATGATGATGAG+AGG + Chr5:101642401-101642420 MsG0580029760.01.T01:CDS 30.0%
! GTTGATACTTTTGTGTTCAT+GGG + Chr5:101642770-101642789 MsG0580029760.01.T01:intron 30.0%
! TCTAGAGGAAGTAGATATTT+TGG + Chr5:101642115-101642134 MsG0580029760.01.T01:intron 30.0%
! TTCACTTGATCTTTCAAGTA+AGG + Chr5:101641314-101641333 MsG0580029760.01.T01:CDS 30.0%
! TTGATACTTTTGTGTTCATG+GGG + Chr5:101642771-101642790 MsG0580029760.01.T01:intron 30.0%
!! AGTTGATACTTTTGTGTTCA+TGG + Chr5:101642769-101642788 MsG0580029760.01.T01:intron 30.0%
!! GTCTTATGCTTGTAGTTTTA+TGG - Chr5:101641740-101641759 None:intergenic 30.0%
!! TGAACACAAAAGTATCAACT+TGG - Chr5:101642769-101642788 None:intergenic 30.0%
!!! TTTTGTTTCTAGACAATGCA+GGG + Chr5:101641263-101641282 MsG0580029760.01.T01:intron 30.0%
AGGGTGTGTATACATTTGAT+AGG + Chr5:101642729-101642748 MsG0580029760.01.T01:intron 35.0%
ATGGAAGTTCTTACAAATGC+TGG + Chr5:101642164-101642183 MsG0580029760.01.T01:intron 35.0%
ATGGGTATATAACTGGCATT+AGG + Chr5:101642800-101642819 MsG0580029760.01.T01:intron 35.0%
ATTTATCTCTCCAGCAAATC+AGG + Chr5:101641380-101641399 MsG0580029760.01.T01:CDS 35.0%
ATTTCCTGATCTTGAACTGA+AGG + Chr5:101643973-101643992 MsG0580029760.01.T01:CDS 35.0%
CAAGTTTATCAACTCTTTCC+TGG - Chr5:101643512-101643531 None:intergenic 35.0%
CATCTTCCTGAATATCTGAT+AGG - Chr5:101642449-101642468 None:intergenic 35.0%
CTATCAGATATTCAGGAAGA+TGG + Chr5:101642447-101642466 MsG0580029760.01.T01:CDS 35.0%
CTTATAATTCATTTCGGAGG+AGG - Chr5:101641903-101641922 None:intergenic 35.0%
CTTATCCTCTCATTCATCAA+AGG + Chr5:101641179-101641198 MsG0580029760.01.T01:CDS 35.0%
GACATTACTTCACAATCTTG+AGG - Chr5:101643893-101643912 None:intergenic 35.0%
GATTATAGCCATAATCTGCA+AGG - Chr5:101643850-101643869 None:intergenic 35.0%
GGGTGTGTATACATTTGATA+GGG + Chr5:101642730-101642749 MsG0580029760.01.T01:intron 35.0%
GTTCACAACTAACTGTTGAA+GGG + Chr5:101642609-101642628 MsG0580029760.01.T01:intron 35.0%
GTTTCAAATACACTTGTGAG+TGG - Chr5:101644016-101644035 None:intergenic 35.0%
TCAGTAGCAATCACATCATA+AGG - Chr5:101642949-101642968 None:intergenic 35.0%
TCAGTTCAAGATCAGGAAAT+TGG - Chr5:101643973-101643992 None:intergenic 35.0%
TCTCTATAAATTCAGGTCCA+GGG - Chr5:101643814-101643833 None:intergenic 35.0%
TCTGATAGGGTCAAAATTCT+TGG - Chr5:101642435-101642454 None:intergenic 35.0%
TGCTGGAGAGATAAATATCA+AGG - Chr5:101641376-101641395 None:intergenic 35.0%
TGGGTATATAACTGGCATTA+GGG + Chr5:101642801-101642820 MsG0580029760.01.T01:intron 35.0%
TGTTCACAACTAACTGTTGA+AGG + Chr5:101642608-101642627 MsG0580029760.01.T01:intron 35.0%
TTCACAACTAACTGTTGAAG+GGG + Chr5:101642610-101642629 MsG0580029760.01.T01:intron 35.0%
TTCTCTATAAATTCAGGTCC+AGG - Chr5:101643815-101643834 None:intergenic 35.0%
TTTCCTGATCTTGAACTGAA+GGG + Chr5:101643974-101643993 MsG0580029760.01.T01:CDS 35.0%
TTTGACCCTATCAGATATTC+AGG + Chr5:101642440-101642459 MsG0580029760.01.T01:CDS 35.0%
! AAAGTATCAACTTGGATAGC+TGG - Chr5:101642761-101642780 None:intergenic 35.0%
! AATATCAAGAAGCATGGTCA+TGG - Chr5:101642684-101642703 None:intergenic 35.0%
! ACAATACAAACCTGATTTGC+TGG - Chr5:101641393-101641412 None:intergenic 35.0%
! AGCTAATGTCCATGTGATTT+TGG - Chr5:101641543-101641562 None:intergenic 35.0%
! CTACAGACTGTTGATGAAAA+AGG - Chr5:101642280-101642299 None:intergenic 35.0%
! GACAATTATGCTCTTGTTTC+TGG + Chr5:101642973-101642992 MsG0580029760.01.T01:CDS 35.0%
! GGTGTATCTTTAATTTCGCT+TGG - Chr5:101643872-101643891 None:intergenic 35.0%
! TAAGAAGAAGTACAGAGCTT+AGG - Chr5:101641163-101641182 None:intergenic 35.0%
! TGAACTAACTGCATTTTCAC+TGG - Chr5:101642351-101642370 None:intergenic 35.0%
! TGATACTTTTGTGTTCATGG+GGG + Chr5:101642772-101642791 MsG0580029760.01.T01:intron 35.0%
!! AAGATTTTCGCTGTTTTCAC+TGG - Chr5:101642390-101642409 None:intergenic 35.0%
!! CTTATTTCTATAAGCTCTCC+AGG + Chr5:101643160-101643179 MsG0580029760.01.T01:intron 35.0%
!! GTGTAGTGTTTTTGTCGTTT+TGG + Chr5:101641713-101641732 MsG0580029760.01.T01:intron 35.0%
!! TTTGTTTCTAGACAATGCAG+GGG + Chr5:101641264-101641283 MsG0580029760.01.T01:intron 35.0%
!!! CTTTTGTTTCTAGACAATGC+AGG + Chr5:101641262-101641281 MsG0580029760.01.T01:intron 35.0%
!!! TAAGGACACAAGTTTTGTTC+AGG + Chr5:101642999-101643018 MsG0580029760.01.T01:CDS 35.0%
AATCACATCATAAGGCTCCT+TGG - Chr5:101642941-101642960 None:intergenic 40.0%
ATAAATTCAGGTCCAGGGTT+AGG - Chr5:101643809-101643828 None:intergenic 40.0%
ATATAACTGGCATTAGGGGA+AGG + Chr5:101642806-101642825 MsG0580029760.01.T01:intron 40.0%
ATCACATCATAAGGCTCCTT+GGG - Chr5:101642940-101642959 None:intergenic 40.0%
ATCACATGGACATTAGCTAG+AGG + Chr5:101641545-101641564 MsG0580029760.01.T01:intron 40.0%
ATGCCAGTTATATACCCATC+AGG - Chr5:101642799-101642818 None:intergenic 40.0%
CATAGCTGCCAGTTTACTAT+TGG - Chr5:101643915-101643934 None:intergenic 40.0%
CGAATGTGTCTTTCTCTAGT+CGG + Chr5:101641676-101641695 MsG0580029760.01.T01:intron 40.0%
CGTTTGTAGCACCAATATAC+CGG + Chr5:101643584-101643603 MsG0580029760.01.T01:intron 40.0%
GGGTATATAACTGGCATTAG+GGG + Chr5:101642802-101642821 MsG0580029760.01.T01:intron 40.0%
TATAACTGGCATTAGGGGAA+GGG + Chr5:101642807-101642826 MsG0580029760.01.T01:intron 40.0%
TCACAACTAACTGTTGAAGG+GGG + Chr5:101642611-101642630 MsG0580029760.01.T01:intron 40.0%
TCACTGGACTCATTCTCAAA+TGG - Chr5:101642374-101642393 None:intergenic 40.0%
TGCCAGTTATATACCCATCA+GGG - Chr5:101642798-101642817 None:intergenic 40.0%
TGGTACCTTTGATGAATGAG+AGG - Chr5:101641187-101641206 None:intergenic 40.0%
! AGCGCCATTATGTTTTTCTG+TGG + Chr5:101641861-101641880 MsG0580029760.01.T01:intron 40.0%
! CAGACTGTTGATGAAAAAGG+TGG - Chr5:101642277-101642296 None:intergenic 40.0%
! GTCTTGATAATTTGTGGTCC+AGG + Chr5:101643491-101643510 MsG0580029760.01.T01:intron 40.0%
!! AATATGCGTTGGTGTCATGT+CGG - Chr5:101643647-101643666 None:intergenic 40.0%
!! GTTGTTTTCATGAGCTATCC+TGG - Chr5:101643181-101643200 None:intergenic 40.0%
AACATTGCCGTTCATTCCCA+AGG + Chr5:101642921-101642940 MsG0580029760.01.T01:CDS 45.0%
AGAAGACTGTCATTGCACTC+AGG + Chr5:101642514-101642533 MsG0580029760.01.T01:CDS 45.0%
AGAGCTTAGGTGATGCTCTT+AGG - Chr5:101641150-101641169 None:intergenic 45.0%
CTACTTGTCAGTGTCATGTC+CGG + Chr5:101643711-101643730 MsG0580029760.01.T01:intron 45.0%
GAAGTTGCTTCACTCAAACG+CGG + Chr5:101642473-101642492 MsG0580029760.01.T01:CDS 45.0%
GAGTGCAATGACAGTCTTCT+TGG - Chr5:101642514-101642533 None:intergenic 45.0%
GTAGCACCAATATACCGGAT+TGG + Chr5:101643589-101643608 MsG0580029760.01.T01:intron 45.0%
TAAGGCTCCTTGGGAATGAA+CGG - Chr5:101642931-101642950 None:intergenic 45.0%
TGAACGGCAATGTTGGAAAG+CGG - Chr5:101642915-101642934 None:intergenic 45.0%
TTGGGAATGAACGGCAATGT+TGG - Chr5:101642922-101642941 None:intergenic 45.0%
TTTCACTGGCAATAGCAAGC+TGG - Chr5:101642337-101642356 None:intergenic 45.0%
!! TGCTCTTGTTTCTGGAGCTA+AGG + Chr5:101642981-101643000 MsG0580029760.01.T01:CDS 45.0%
ACGCCACCAATCCGGTATAT+TGG - Chr5:101643598-101643617 None:intergenic 50.0%
CAACTAACTGTTGAAGGGGG+AGG + Chr5:101642614-101642633 MsG0580029760.01.T01:intron 50.0%
CACTGACATGTGTGAGACAC+CGG - Chr5:101643623-101643642 None:intergenic 50.0%
CAGCTATGATGTCCATGCCA+GGG + Chr5:101643927-101643946 MsG0580029760.01.T01:CDS 50.0%
GAGACGCAGGAGATGATCAA+AGG + Chr5:101642877-101642896 MsG0580029760.01.T01:CDS 50.0%
GAGCCCTTCAGTTCAAGATC+AGG - Chr5:101643980-101643999 None:intergenic 50.0%
TACTCAAGGACACCTAACCC+TGG + Chr5:101643794-101643813 MsG0580029760.01.T01:CDS 50.0%
TGAGACACAACTTGAGACGC+AGG + Chr5:101642864-101642883 MsG0580029760.01.T01:CDS 50.0%
! GCACCAATATACCGGATTGG+TGG + Chr5:101643592-101643611 MsG0580029760.01.T01:intron 50.0%
! GGCCCTGATGGGTATATAAC+TGG + Chr5:101642793-101642812 MsG0580029760.01.T01:intron 50.0%
! TCACTCAAACGCGGTTTTGC+TGG + Chr5:101642482-101642501 MsG0580029760.01.T01:CDS 50.0%
GACTGTCATTGCACTCAGGC+AGG + Chr5:101642518-101642537 MsG0580029760.01.T01:CDS 55.0%
GCAGCTATGATGTCCATGCC+AGG + Chr5:101643926-101643945 MsG0580029760.01.T01:CDS 55.0%
GTTAGTGCCTGTTGCATCCC+TGG - Chr5:101643947-101643966 None:intergenic 55.0%
! AAACGCGGTTTTGCTGGAGC+AGG + Chr5:101642488-101642507 MsG0580029760.01.T01:CDS 55.0%
GTCCATGCCAGGGATGCAAC+AGG + Chr5:101643937-101643956 MsG0580029760.01.T01:CDS 60.0%
GTGTTCATGGGGGCCCTGAT+GGG + Chr5:101642782-101642801 MsG0580029760.01.T01:intron 60.0%
TGCCTGTTGCATCCCTGGCA+TGG - Chr5:101643942-101643961 None:intergenic 60.0%
TGTGTTCATGGGGGCCCTGA+TGG + Chr5:101642781-101642800 MsG0580029760.01.T01:intron 60.0%
!! TACCGGATTGGTGGCGTGTC+CGG + Chr5:101643601-101643620 MsG0580029760.01.T01:intron 60.0%
CACCGGACACGCCACCAATC+CGG - Chr5:101643606-101643625 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 101641085 101644207 101641085 ID=MsG0580029760.01;Name=MsG0580029760.01
Chr5 mRNA 101641085 101644207 101641085 ID=MsG0580029760.01.T01;Parent=MsG0580029760.01;Name=MsG0580029760.01.T01;_AED=0.34;_eAED=0.34;_QI=48|0.75|0.6|1|1|1|5|138|311
Chr5 exon 101641085 101641200 101641085 ID=MsG0580029760.01.T01:exon:26369;Parent=MsG0580029760.01.T01
Chr5 exon 101641284 101641401 101641284 ID=MsG0580029760.01.T01:exon:26370;Parent=MsG0580029760.01.T01
Chr5 exon 101642293 101642564 101642293 ID=MsG0580029760.01.T01:exon:26371;Parent=MsG0580029760.01.T01
Chr5 exon 101642822 101643020 101642822 ID=MsG0580029760.01.T01:exon:26372;Parent=MsG0580029760.01.T01
Chr5 exon 101643791 101644207 101643791 ID=MsG0580029760.01.T01:exon:26373;Parent=MsG0580029760.01.T01
Chr5 five_prime_UTR 101641085 101641132 101641085 ID=MsG0580029760.01.T01:five_prime_utr;Parent=MsG0580029760.01.T01
Chr5 CDS 101641133 101641200 101641133 ID=MsG0580029760.01.T01:cds;Parent=MsG0580029760.01.T01
Chr5 CDS 101641284 101641401 101641284 ID=MsG0580029760.01.T01:cds;Parent=MsG0580029760.01.T01
Chr5 CDS 101642293 101642564 101642293 ID=MsG0580029760.01.T01:cds;Parent=MsG0580029760.01.T01
Chr5 CDS 101642822 101643020 101642822 ID=MsG0580029760.01.T01:cds;Parent=MsG0580029760.01.T01
Chr5 CDS 101643791 101644069 101643791 ID=MsG0580029760.01.T01:cds;Parent=MsG0580029760.01.T01
Chr5 three_prime_UTR 101644070 101644207 101644070 ID=MsG0580029760.01.T01:three_prime_utr;Parent=MsG0580029760.01.T01
Gene Sequence

>MsG0580029760.01.T01

ATGGTAGATATTTTCCTAAGAGCATCACCTAAGCTCTGTACTTCTTCTTATCCTCTCATTCATCAAAGGGGAGTGTCAAGAAAAACACAGTTGAAGTGTTCACTTGATCTTTCAAGTAAGGTTCTGACTAAACATGTTTTATCTGGTCTTGCTGCTTCCTTGATATTTATCTCTCCAGCAAATCAGTCTGTAGCAGCAGATCTATATTCTCATCAACAAAACATATGCCAGCTTGCTATTGCCAGTGAAAATGCAGTTAGTTCACCATTTGAGAATGAGTCCAGTGAAAACAGCGAAAATCTTATGATGATGAGAGGTATGACAGCCAAGAATTTTGACCCTATCAGATATTCAGGAAGATGGTTTGAAGTTGCTTCACTCAAACGCGGTTTTGCTGGAGCAGGCCAAGAAGACTGTCATTGCACTCAGGCAGGTGAATGCTATAATAAATATAGTCTGGGAAGGGTTCAATGTCTTTCACAAGAAGATTTGGTGAAAAATGAGACACAACTTGAGACGCAGGAGATGATCAAAGGAAAATGCTTTCTCCGCTTTCCAACATTGCCGTTCATTCCCAAGGAGCCTTATGATGTGATTGCTACTGATTATGACAATTATGCTCTTGTTTCTGGAGCTAAGGACACAAGTTTTGTTCAGATATACTCAAGGACACCTAACCCTGGACCTGAATTTATAGAGAAATACAAAACTTACCTTGCAGATTATGGCTATAATCCAAGCGAAATTAAAGATACACCTCAAGATTGTGAAGTAATGTCCAATAGTAAACTGGCAGCTATGATGTCCATGCCAGGGATGCAACAGGCACTAACAAACCAATTTCCTGATCTTGAACTGAAGGGCTCTGTTGCATTTGATCCACTCACAAGTGTATTTGAAACTCTGAAGAAGCTTGTTGAGCTTTATTTTAAGTAG
Protein sequence

>MsG0580029760.01.T01

MVDIFLRASPKLCTSSYPLIHQRGVSRKTQLKCSLDLSSKVLTKHVLSGLAASLIFISPANQSVAADLYSHQQNICQLAIASENAVSSPFENESSENSENLMMMRGMTAKNFDPIRYSGRWFEVASLKRGFAGAGQEDCHCTQAGECYNKYSLGRVQCLSQEDLVKNETQLETQEMIKGKCFLRFPTLPFIPKEPYDVIATDYDNYALVSGAKDTSFVQIYSRTPNPGPEFIEKYKTYLADYGYNPSEIKDTPQDCEVMSNSKLAAMMSMPGMQQALTNQFPDLELKGSVAFDPLTSVFETLKKLVELYFK*