Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017427.01.T01 | XP_013461885.1 | 60 | 80 | 8 | 1 | 1 | 56 | 61 | 140 | 4.87E-20 | 87 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017427.01.T01 | Q9SN73 | 43.75 | 80 | 21 | 1 | 1 | 56 | 57 | 136 | 4.38E-15 | 67 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017427.01.T01 | A0A072VCQ1 | 60.000 | 80 | 8 | 1 | 1 | 56 | 61 | 140 | 2.32e-20 | 87.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048727.01 | MsG0380017427.01 | 0.812206 | 4.763409e-51 | 3.009860e-48 |
| MsG0080048995.01 | MsG0380017427.01 | 0.855621 | 5.580460e-62 | 1.296122e-58 |
| MsG0080049029.01 | MsG0380017427.01 | 0.844146 | 9.058295e-59 | 1.449113e-55 |
| MsG0080049068.01 | MsG0380017427.01 | 0.820718 | 5.915799e-53 | 4.717187e-50 |
| MsG0080049069.01 | MsG0380017427.01 | 0.841065 | 5.955580e-58 | 8.648827e-55 |
| MsG0080049070.01 | MsG0380017427.01 | 0.889623 | 2.052681e-73 | 1.669121e-69 |
| MsG0180000113.01 | MsG0380017427.01 | 0.818287 | 2.120629e-52 | 1.580737e-49 |
| MsG0180000549.01 | MsG0380017427.01 | 0.830280 | 3.210518e-55 | 3.367013e-52 |
| MsG0180000833.01 | MsG0380017427.01 | 0.846532 | 2.047899e-59 | 3.535729e-56 |
| MsG0180000834.01 | MsG0380017427.01 | 0.839254 | 1.768783e-57 | 2.428770e-54 |
| MsG0180001175.01 | MsG0380017427.01 | 0.835655 | 1.478945e-56 | 1.820276e-53 |
| MsG0180001270.01 | MsG0380017427.01 | 0.808706 | 2.714994e-50 | 1.563196e-47 |
| MsG0180001548.01 | MsG0380017427.01 | 0.911860 | 3.767728e-83 | 8.238677e-79 |
| MsG0180002700.01 | MsG0380017427.01 | 0.863700 | 2.064653e-64 | 6.317579e-61 |
| MsG0180003196.01 | MsG0380017427.01 | 0.873689 | 1.210685e-67 | 5.301018e-64 |
| MsG0180003404.01 | MsG0380017427.01 | -0.805219 | 1.483924e-49 | 7.806508e-47 |
| MsG0180003547.01 | MsG0380017427.01 | 0.838923 | 2.154556e-57 | 2.928762e-54 |
| MsG0180003637.01 | MsG0380017427.01 | -0.827246 | 1.739134e-54 | 1.669674e-51 |
| MsG0180003942.01 | MsG0380017427.01 | -0.847198 | 1.345755e-59 | 2.373608e-56 |
| MsG0180004006.01 | MsG0380017427.01 | 0.860146 | 2.531787e-63 | 6.851933e-60 |
| MsG0180004448.01 | MsG0380017427.01 | 0.801646 | 8.161626e-49 | 3.918109e-46 |
| MsG0180004792.01 | MsG0380017427.01 | 0.838315 | 3.092993e-57 | 4.126852e-54 |
| MsG0180004954.01 | MsG0380017427.01 | -0.814512 | 1.483500e-51 | 9.974585e-49 |
| MsG0180005184.01 | MsG0380017427.01 | 0.808667 | 2.767797e-50 | 1.591981e-47 |
| MsG0180005395.01 | MsG0380017427.01 | -0.817393 | 3.375476e-52 | 2.455254e-49 |
| MsG0180005822.01 | MsG0380017427.01 | 0.841185 | 5.539988e-58 | 8.075813e-55 |
| MsG0180005961.01 | MsG0380017427.01 | 0.801516 | 8.677906e-49 | 4.152487e-46 |
| MsG0180005964.01 | MsG0380017427.01 | 0.872611 | 2.783886e-67 | 1.172315e-63 |
| MsG0180006028.01 | MsG0380017427.01 | 0.879932 | 8.319404e-70 | 4.597692e-66 |
| MsG0180006217.01 | MsG0380017427.01 | 0.855808 | 4.918637e-62 | 1.149669e-58 |
| MsG0280010644.01 | MsG0380017427.01 | -0.804761 | 1.849934e-49 | 9.618477e-47 |
| MsG0280010728.01 | MsG0380017427.01 | 0.814112 | 1.818856e-51 | 1.209664e-48 |
| MsG0280011180.01 | MsG0380017427.01 | 0.835150 | 1.984245e-56 | 2.405448e-53 |
| MsG0280011218.01 | MsG0380017427.01 | 0.853092 | 3.002790e-61 | 6.412777e-58 |
| MsG0280011271.01 | MsG0380017427.01 | -0.810432 | 1.155945e-50 | 6.966595e-48 |
| MsG0380012658.01 | MsG0380017427.01 | -0.802367 | 5.802112e-49 | 2.837154e-46 |
| MsG0380012868.01 | MsG0380017427.01 | 0.895122 | 1.293841e-75 | 1.324582e-71 |
| MsG0380014588.01 | MsG0380017427.01 | 0.821838 | 3.264109e-53 | 2.685795e-50 |
| MsG0380015024.01 | MsG0380017427.01 | 0.804255 | 2.358574e-49 | 1.210318e-46 |
| MsG0380015456.01 | MsG0380017427.01 | 0.802383 | 5.759574e-49 | 2.817522e-46 |
| MsG0380016057.01 | MsG0380017427.01 | 0.842197 | 2.995561e-58 | 4.507179e-55 |
| MsG0380016471.01 | MsG0380017427.01 | 0.812387 | 4.349947e-51 | 2.762032e-48 |
| MsG0380016574.01 | MsG0380017427.01 | -0.802937 | 4.425691e-49 | 2.195604e-46 |
| MsG0380017143.01 | MsG0380017427.01 | 0.808479 | 3.035234e-50 | 1.737384e-47 |
| MsG0380017162.01 | MsG0380017427.01 | 0.834258 | 3.325676e-56 | 3.925531e-53 |
| MsG0380017411.01 | MsG0380017427.01 | -0.813217 | 2.861688e-51 | 1.857505e-48 |
| MsG0380017427.01 | MsG0480018337.01 | 0.917530 | 4.743740e-86 | 1.375762e-81 |
| MsG0380017427.01 | MsG0480018338.01 | 0.874642 | 5.758596e-68 | 2.611904e-64 |
| MsG0380017427.01 | MsG0480018592.01 | 0.808773 | 2.627206e-50 | 1.515277e-47 |
| MsG0380017427.01 | MsG0480018644.01 | 0.848428 | 6.169199e-60 | 1.131819e-56 |
| MsG0380017427.01 | MsG0480018676.01 | 0.827807 | 1.276024e-54 | 1.245047e-51 |
| MsG0380017427.01 | MsG0480019812.01 | 0.902514 | 8.966307e-79 | 1.273912e-74 |
| MsG0380017427.01 | MsG0480020473.01 | 0.843175 | 1.646741e-58 | 2.554926e-55 |
| MsG0380017427.01 | MsG0480020596.01 | 0.870410 | 1.489865e-66 | 5.789706e-63 |
| MsG0380017427.01 | MsG0480020753.01 | 0.816933 | 4.283147e-52 | 3.076518e-49 |
| MsG0380017427.01 | MsG0480021038.01 | 0.919506 | 4.132896e-87 | 1.331906e-82 |
| MsG0380017427.01 | MsG0480021101.01 | 0.818857 | 1.575045e-52 | 1.192770e-49 |
| MsG0380017427.01 | MsG0480021213.01 | 0.918165 | 2.179612e-86 | 6.544011e-82 |
| MsG0380017427.01 | MsG0480021248.01 | 0.807348 | 5.282425e-50 | 2.935322e-47 |
| MsG0380017427.01 | MsG0480021783.01 | 0.806518 | 7.911122e-50 | 4.302755e-47 |
| MsG0380017427.01 | MsG0480021967.01 | 0.805119 | 1.556603e-49 | 8.168297e-47 |
| MsG0380017427.01 | MsG0480022113.01 | 0.911201 | 7.952852e-83 | 1.685129e-78 |
| MsG0380017427.01 | MsG0480022154.01 | 0.801240 | 9.884583e-49 | 4.697141e-46 |
| MsG0380017427.01 | MsG0480022162.01 | 0.856825 | 2.475569e-62 | 5.983623e-59 |
| MsG0380017427.01 | MsG0480022240.01 | 0.835181 | 1.948157e-56 | 2.363994e-53 |
| MsG0380017427.01 | MsG0480023406.01 | 0.850205 | 1.974234e-60 | 3.837641e-57 |
| MsG0380017427.01 | MsG0480023454.01 | -0.800201 | 1.610510e-48 | 7.453876e-46 |
| MsG0380017427.01 | MsG0480023466.01 | 0.820360 | 7.146109e-53 | 5.642155e-50 |
| MsG0380017427.01 | MsG0480024011.01 | 0.840756 | 7.177300e-58 | 1.032498e-54 |
| MsG0380017427.01 | MsG0580025366.01 | 0.824303 | 8.681738e-54 | 7.659763e-51 |
| MsG0380017427.01 | MsG0580025610.01 | 0.811536 | 6.666005e-51 | 4.137077e-48 |
| MsG0380017427.01 | MsG0580025627.01 | 0.846331 | 2.323181e-59 | 3.984495e-56 |
| MsG0380017427.01 | MsG0580027183.01 | 0.898225 | 6.535679e-77 | 7.654901e-73 |
| MsG0380017427.01 | MsG0580027189.01 | 0.913013 | 1.005763e-83 | 2.329071e-79 |
| MsG0380017427.01 | MsG0580029325.01 | 0.868221 | 7.667942e-66 | 2.752413e-62 |
| MsG0380017427.01 | MsG0580029511.01 | 0.826051 | 3.354542e-54 | 3.111480e-51 |
| MsG0380017427.01 | MsG0580029760.01 | 0.800279 | 1.553018e-48 | 7.202221e-46 |
| MsG0380017427.01 | MsG0580029862.01 | 0.801862 | 7.370383e-49 | 3.557906e-46 |
| MsG0380017427.01 | MsG0680031826.01 | 0.860758 | 1.652632e-63 | 4.567501e-60 |
| MsG0380017427.01 | MsG0680032850.01 | 0.924458 | 6.856924e-90 | 2.901485e-85 |
| MsG0380017427.01 | MsG0680034759.01 | -0.831305 | 1.800156e-55 | 1.945726e-52 |
| MsG0380017427.01 | MsG0680035344.01 | -0.823110 | 1.652097e-53 | 1.409480e-50 |
| MsG0380017427.01 | MsG0680035532.01 | 0.816433 | 5.545086e-52 | 3.928385e-49 |
| MsG0380017427.01 | MsG0780035965.01 | 0.839591 | 1.445984e-57 | 2.006207e-54 |
| MsG0380017427.01 | MsG0780035976.01 | -0.807262 | 5.506739e-50 | 3.053258e-47 |
| MsG0380017427.01 | MsG0780036008.01 | 0.836358 | 9.807223e-57 | 1.233056e-53 |
| MsG0380017427.01 | MsG0780036347.01 | -0.826552 | 2.548591e-54 | 2.397740e-51 |
| MsG0380017427.01 | MsG0780036792.01 | 0.804404 | 2.196168e-49 | 1.131306e-46 |
| MsG0380017427.01 | MsG0780037363.01 | 0.830307 | 3.161961e-55 | 3.318638e-52 |
| MsG0380017427.01 | MsG0780037662.01 | 0.803572 | 3.269789e-49 | 1.648926e-46 |
| MsG0380017427.01 | MsG0780038727.01 | -0.805640 | 1.211030e-49 | 6.440330e-47 |
| MsG0380017427.01 | MsG0780039161.01 | 0.846703 | 1.838528e-59 | 3.192040e-56 |
| MsG0380017427.01 | MsG0780039675.01 | 0.810693 | 1.015391e-50 | 6.162587e-48 |
| MsG0380017427.01 | MsG0780040214.01 | 0.821069 | 4.912234e-53 | 3.955905e-50 |
| MsG0380017427.01 | MsG0780040236.01 | 0.846144 | 2.612426e-59 | 4.453514e-56 |
| MsG0380017427.01 | MsG0780040277.01 | 0.811661 | 6.262725e-51 | 3.899287e-48 |
| MsG0380017427.01 | MsG0780040550.01 | 0.847620 | 1.030349e-59 | 1.842060e-56 |
| MsG0380017427.01 | MsG0780040684.01 | 0.875459 | 3.031264e-68 | 1.416197e-64 |
| MsG0380017427.01 | MsG0780040965.01 | 0.857318 | 1.770701e-62 | 4.352580e-59 |
| MsG0380017427.01 | MsG0780041174.01 | 0.810847 | 9.405161e-51 | 5.731657e-48 |
| MsG0380017427.01 | MsG0780041331.01 | 0.890129 | 1.302202e-73 | 1.081038e-69 |
| MsG0380017427.01 | MsG0780041361.01 | 0.892013 | 2.347604e-74 | 2.106830e-70 |
| MsG0380017427.01 | MsG0780041385.01 | 0.809897 | 1.508031e-50 | 8.962023e-48 |
| MsG0380017427.01 | MsG0780041442.01 | 0.815508 | 8.918582e-52 | 6.160996e-49 |
| MsG0380017427.01 | MsG0880041847.01 | 0.874326 | 7.371543e-68 | 3.304219e-64 |
| MsG0380017427.01 | MsG0880042086.01 | 0.841102 | 5.825392e-58 | 8.469554e-55 |
| MsG0380017427.01 | MsG0880042415.01 | 0.865852 | 4.371171e-65 | 1.443218e-61 |
| MsG0380017427.01 | MsG0880043024.01 | 0.865731 | 4.775171e-65 | 1.569972e-61 |
| MsG0380017427.01 | MsG0880043092.01 | 0.856181 | 3.826690e-62 | 9.054924e-59 |
| MsG0380017427.01 | MsG0880043476.01 | 0.841570 | 4.385001e-58 | 6.470025e-55 |
| MsG0380017427.01 | MsG0880044901.01 | -0.816660 | 4.930754e-52 | 3.515239e-49 |
| MsG0380017427.01 | MsG0880045327.01 | 0.855744 | 5.137785e-62 | 1.198297e-58 |
| MsG0380017427.01 | MsG0880045444.01 | 0.823620 | 1.255713e-53 | 1.086833e-50 |
| MsG0380017427.01 | MsG0880045648.01 | 0.800449 | 1.433715e-48 | 6.677573e-46 |
| MsG0380017427.01 | MsG0880046124.01 | 0.813177 | 2.921161e-51 | 1.893989e-48 |
| MsG0380017427.01 | MsG0880046267.01 | 0.805338 | 1.400780e-49 | 7.391742e-47 |
| MsG0380017427.01 | MsG0880046434.01 | -0.807254 | 5.530392e-50 | 3.065610e-47 |
| MsG0380017427.01 | MsG0880046765.01 | 0.816010 | 6.891342e-52 | 4.826420e-49 |
| MsG0380017427.01 | MsG0880046946.01 | -0.814345 | 1.615472e-51 | 1.081260e-48 |
| MsG0380017427.01 | MsG0880047312.01 | -0.838239 | 3.235748e-57 | 4.307207e-54 |
| MsG0380017427.01 | MsG0880047656.01 | 0.832288 | 1.029612e-55 | 1.145566e-52 |
| MsG0280006505.01 | MsG0380017427.01 | -0.809226 | 2.100745e-50 | 1.226497e-47 |
| MsG0280006607.01 | MsG0380017427.01 | 0.803606 | 3.217663e-49 | 1.623979e-46 |
| MsG0280007406.01 | MsG0380017427.01 | 0.884911 | 1.278735e-71 | 8.595973e-68 |
| MsG0280007647.01 | MsG0380017427.01 | 0.803279 | 3.760660e-49 | 1.882066e-46 |
| MsG0280007852.01 | MsG0380017427.01 | 0.875208 | 3.694115e-68 | 1.710690e-64 |
| MsG0280007853.01 | MsG0380017427.01 | 0.876637 | 1.192198e-68 | 5.822936e-65 |
| MsG0280008223.01 | MsG0380017427.01 | 0.832696 | 8.157244e-56 | 9.188077e-53 |
| MsG0280008388.01 | MsG0380017427.01 | 0.836412 | 9.501346e-57 | 1.196452e-53 |
| MsG0280008394.01 | MsG0380017427.01 | 0.815062 | 1.120478e-51 | 7.645852e-49 |
| MsG0280008451.01 | MsG0380017427.01 | 0.805628 | 1.217749e-49 | 6.474147e-47 |
| MsG0280008452.01 | MsG0380017427.01 | -0.822549 | 2.232013e-53 | 1.874281e-50 |
| MsG0280009675.01 | MsG0380017427.01 | 0.840115 | 1.055976e-57 | 1.489282e-54 |
| MsG0280009756.01 | MsG0380017427.01 | 0.804076 | 2.569792e-49 | 1.312773e-46 |
| MsG0280010353.01 | MsG0380017427.01 | 0.820727 | 5.886544e-53 | 4.695066e-50 |
| MsG0280010468.01 | MsG0380017427.01 | -0.852214 | 5.345198e-61 | 1.109033e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017427.01.T01 | MTR_3g107397 | 60.000 | 80 | 8 | 1 | 1 | 56 | 61 | 140 | 5.89e-24 | 87.0 |
| MsG0380017427.01.T01 | MTR_4g114180 | 40.000 | 80 | 23 | 2 | 1 | 55 | 53 | 132 | 1.01e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017427.01.T01 | AT3G47650 | 43.750 | 80 | 21 | 1 | 1 | 56 | 57 | 136 | 4.46e-16 | 67.0 |
Find 20 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATGAAGTATGTAATAA+TGG | 0.243773 | 3:+96172526 | None:intergenic |
| TCAGCACAGATGACACTATT+TGG | 0.263290 | 3:+96173377 | None:intergenic |
| TGCAATGGAGCTGGATTTAT+CGG | 0.322631 | 3:-96172796 | MsG0380017427.01.T01:CDS |
| TCAATGAAGTATGTAATAAT+GGG | 0.409734 | 3:+96172527 | None:intergenic |
| TTATTACATACTTCATTGAA+TGG | 0.423113 | 3:-96172523 | None:intergenic |
| TTGGATCTGTCCCTCCCTAC+TGG | 0.458506 | 3:+96172752 | None:intergenic |
| CAGTTCACTTGTAGCCATAG+TGG | 0.465843 | 3:-96172638 | MsG0380017427.01.T01:three_prime_UTR |
| CTGAACTTGTTCGCAGTCGT+TGG | 0.486092 | 3:+96172733 | None:intergenic |
| TGTGGGAATTGCAATGGAGC+TGG | 0.521634 | 3:-96172805 | MsG0380017427.01.T01:CDS |
| GGCAGGAAGGAGATGTTATG+TGG | 0.530714 | 3:-96172823 | MsG0380017427.01.T01:CDS |
| TGTGCTGATTGTGATGGAAA+TGG | 0.538508 | 3:-96173362 | MsG0380017427.01.T01:CDS |
| GCAGGAAGGAGATGTTATGT+GGG | 0.542628 | 3:-96172822 | MsG0380017427.01.T01:CDS |
| CTTGAGCACATATGACCAGT+AGG | 0.554604 | 3:-96172767 | MsG0380017427.01.T01:exon |
| ATGTTATGTGGGAATTGCAA+TGG | 0.609174 | 3:-96172811 | MsG0380017427.01.T01:CDS |
| AATGGAGCTGGATTTATCGG+TGG | 0.609254 | 3:-96172793 | MsG0380017427.01.T01:CDS |
| TTGAGCACATATGACCAGTA+GGG | 0.613108 | 3:-96172766 | MsG0380017427.01.T01:exon |
| GTCATCTGTGCTGATTGTGA+TGG | 0.623087 | 3:-96173368 | MsG0380017427.01.T01:CDS |
| AGCACATATGACCAGTAGGG+AGG | 0.624035 | 3:-96172763 | MsG0380017427.01.T01:exon |
| CACTATCATACTGATGCTCA+AGG | 0.627147 | 3:-96172585 | MsG0380017427.01.T01:three_prime_UTR |
| GCACATATGACCAGTAGGGA+GGG | 0.642431 | 3:-96172762 | MsG0380017427.01.T01:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAAAAAAATGC+AGG | - | Chr3:96173322-96173341 | MsG0380017427.01.T01:intron | 10.0% |
| !! | AAAATTTGCATTTAACAATT+AGG | + | Chr3:96172967-96172986 | None:intergenic | 15.0% |
| !!! | ATAGAATGATTTTACTAATT+AGG | + | Chr3:96172907-96172926 | None:intergenic | 15.0% |
| !!! | TTATATTTTGTGTAATTAAC+AGG | - | Chr3:96172782-96172801 | MsG0380017427.01.T01:CDS | 15.0% |
| !! | CGATGAACAATAATAATATA+AGG | + | Chr3:96173074-96173093 | None:intergenic | 20.0% |
| !! | TCAATGAAGTATGTAATAAT+GGG | + | Chr3:96173407-96173426 | None:intergenic | 20.0% |
| !! | TTATTACATACTTCATTGAA+TGG | - | Chr3:96173408-96173427 | MsG0380017427.01.T01:CDS | 20.0% |
| !! | TTCAATGAAGTATGTAATAA+TGG | + | Chr3:96173408-96173427 | None:intergenic | 20.0% |
| !!! | AGATGACATATGATTTTATA+AGG | - | Chr3:96172594-96172613 | MsG0380017427.01.T01:three_prime_UTR | 20.0% |
| ! | CAAGAGAAAATATACATCTA+CGG | - | Chr3:96172746-96172765 | MsG0380017427.01.T01:three_prime_UTR | 25.0% |
| ! | TAATAATATAAGGCACATTG+TGG | + | Chr3:96173064-96173083 | None:intergenic | 25.0% |
| !!! | TATTTGGTTTTGTGTTTTGT+TGG | + | Chr3:96172541-96172560 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTAGCAACCACTA+TGG | + | Chr3:96173310-96173329 | None:intergenic | 25.0% |
| AACGATTTACATGCTCATAA+CGG | + | Chr3:96172672-96172691 | None:intergenic | 30.0% | |
| AATGTATTTGTGGTTGTTGA+AGG | - | Chr3:96172717-96172736 | MsG0380017427.01.T01:three_prime_UTR | 30.0% | |
| TGCTTCTTGTAATGTATTTG+TGG | - | Chr3:96172707-96172726 | MsG0380017427.01.T01:three_prime_UTR | 30.0% | |
| ! | AACTCTGTTGATATTTTCGA+TGG | - | Chr3:96172842-96172861 | MsG0380017427.01.T01:intron | 30.0% |
| AAGGCTTCATTGTATTCTAG+AGG | + | Chr3:96173002-96173021 | None:intergenic | 35.0% | |
| ATGTTATGTGGGAATTGCAA+TGG | - | Chr3:96173120-96173139 | MsG0380017427.01.T01:intron | 35.0% | |
| ! | AATGAAGCCTTATGATCAGT+AGG | - | Chr3:96173011-96173030 | MsG0380017427.01.T01:intron | 35.0% |
| ! | ATGAAGCCTTATGATCAGTA+GGG | - | Chr3:96173012-96173031 | MsG0380017427.01.T01:intron | 35.0% |
| !!! | TTCATCGTTTTTTACTCCAG+AGG | - | Chr3:96173087-96173106 | MsG0380017427.01.T01:intron | 35.0% |
| ATTGTCTGCTCTCAATGCAA+AGG | - | Chr3:96172809-96172828 | MsG0380017427.01.T01:CDS | 40.0% | |
| CACTATCATACTGATGCTCA+AGG | - | Chr3:96173346-96173365 | MsG0380017427.01.T01:CDS | 40.0% | |
| TCAGCACAGATGACACTATT+TGG | + | Chr3:96172557-96172576 | None:intergenic | 40.0% | |
| TGCAATGGAGCTGGATTTAT+CGG | - | Chr3:96173135-96173154 | MsG0380017427.01.T01:intron | 40.0% | |
| TTGAGCACATATGACCAGTA+GGG | - | Chr3:96173165-96173184 | MsG0380017427.01.T01:intron | 40.0% | |
| !! | TGTGCTGATTGTGATGGAAA+TGG | - | Chr3:96172569-96172588 | MsG0380017427.01.T01:three_prime_UTR | 40.0% |
| !! | TTCGATGGACTGTTTAAAGC+TGG | - | Chr3:96172857-96172876 | MsG0380017427.01.T01:intron | 40.0% |
| AATGGAGCTGGATTTATCGG+TGG | - | Chr3:96173138-96173157 | MsG0380017427.01.T01:intron | 45.0% | |
| CAGTTCACTTGTAGCCATAG+TGG | - | Chr3:96173293-96173312 | MsG0380017427.01.T01:intron | 45.0% | |
| CTTGAGCACATATGACCAGT+AGG | - | Chr3:96173164-96173183 | MsG0380017427.01.T01:intron | 45.0% | |
| GCAGGAAGGAGATGTTATGT+GGG | - | Chr3:96173109-96173128 | MsG0380017427.01.T01:intron | 45.0% | |
| GTTCCTCCCTACTGATCATA+AGG | + | Chr3:96173021-96173040 | None:intergenic | 45.0% | |
| TGCTCTCAATGCAAAGGTAG+CGG | - | Chr3:96172815-96172834 | MsG0380017427.01.T01:CDS | 45.0% | |
| ! | AAGCCTTATGATCAGTAGGG+AGG | - | Chr3:96173015-96173034 | MsG0380017427.01.T01:intron | 45.0% |
| ! | TTTTTACTCCAGAGGCAGGA+AGG | - | Chr3:96173095-96173114 | MsG0380017427.01.T01:intron | 45.0% |
| !! | GTCATCTGTGCTGATTGTGA+TGG | - | Chr3:96172563-96172582 | MsG0380017427.01.T01:three_prime_UTR | 45.0% |
| !!! | TCGTTTTTTACTCCAGAGGC+AGG | - | Chr3:96173091-96173110 | MsG0380017427.01.T01:intron | 45.0% |
| AGCACATATGACCAGTAGGG+AGG | - | Chr3:96173168-96173187 | MsG0380017427.01.T01:intron | 50.0% | |
| GCACATATGACCAGTAGGGA+GGG | - | Chr3:96173169-96173188 | MsG0380017427.01.T01:intron | 50.0% | |
| GGCAGGAAGGAGATGTTATG+TGG | - | Chr3:96173108-96173127 | MsG0380017427.01.T01:intron | 50.0% | |
| TAACATCTCCTTCCTGCCTC+TGG | + | Chr3:96173106-96173125 | None:intergenic | 50.0% | |
| TGTGGGAATTGCAATGGAGC+TGG | - | Chr3:96173126-96173145 | MsG0380017427.01.T01:intron | 50.0% | |
| TTAAAGCTGGTGCCTCCTGT+TGG | - | Chr3:96172870-96172889 | MsG0380017427.01.T01:intron | 50.0% | |
| ! | CTGAACTTGTTCGCAGTCGT+TGG | + | Chr3:96173201-96173220 | None:intergenic | 50.0% |
| TAGGTACCCGCAAAGCCAAC+AGG | + | Chr3:96172888-96172907 | None:intergenic | 55.0% | |
| TTGGATCTGTCCCTCCCTAC+TGG | + | Chr3:96173182-96173201 | None:intergenic | 55.0% | |
| GTACCCGCAAAGCCAACAGG+AGG | + | Chr3:96172885-96172904 | None:intergenic | 60.0% | |
| !! | GGTGCCTCCTGTTGGCTTTG+CGG | - | Chr3:96172878-96172897 | MsG0380017427.01.T01:intron | 60.0% |
| !! | GTGCCTCCTGTTGGCTTTGC+GGG | - | Chr3:96172879-96172898 | MsG0380017427.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 96172524 | 96173429 | 96172524 | ID=MsG0380017427.01;Name=MsG0380017427.01 |
| Chr3 | mRNA | 96172524 | 96173429 | 96172524 | ID=MsG0380017427.01.T01;Parent=MsG0380017427.01;Name=MsG0380017427.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0.5|1|0|0|2|244|56 |
| Chr3 | exon | 96172524 | 96172846 | 96172524 | ID=MsG0380017427.01.T01:exon:17451;Parent=MsG0380017427.01.T01 |
| Chr3 | exon | 96173338 | 96173429 | 96173338 | ID=MsG0380017427.01.T01:exon:17450;Parent=MsG0380017427.01.T01 |
| Chr3 | CDS | 96173338 | 96173429 | 96173338 | ID=MsG0380017427.01.T01:cds;Parent=MsG0380017427.01.T01 |
| Chr3 | CDS | 96172768 | 96172846 | 96172768 | ID=MsG0380017427.01.T01:cds;Parent=MsG0380017427.01.T01 |
| Chr3 | three_prime_UTR | 96172524 | 96172767 | 96172524 | ID=MsG0380017427.01.T01:three_prime_utr;Parent=MsG0380017427.01.T01 |
| Gene Sequence |
| Protein sequence |
