AlfalfaGEDB | MsG0380017427.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017427.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017427.01.T01	XP_013461885.1	60	80	8	1	1	56	61	140	4.87E-20	87

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017427.01.T01	Q9SN73	43.75	80	21	1	1	56	57	136	4.38E-15	67

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017427.01.T01	A0A072VCQ1	60.000	80	8	1	1	56	61	140	2.32e-20	87.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048727.01	MsG0380017427.01	0.812206	4.763409e-51	3.009860e-48
MsG0080048995.01	MsG0380017427.01	0.855621	5.580460e-62	1.296122e-58
MsG0080049029.01	MsG0380017427.01	0.844146	9.058295e-59	1.449113e-55
MsG0080049068.01	MsG0380017427.01	0.820718	5.915799e-53	4.717187e-50
MsG0080049069.01	MsG0380017427.01	0.841065	5.955580e-58	8.648827e-55
MsG0080049070.01	MsG0380017427.01	0.889623	2.052681e-73	1.669121e-69
MsG0180000113.01	MsG0380017427.01	0.818287	2.120629e-52	1.580737e-49
MsG0180000549.01	MsG0380017427.01	0.830280	3.210518e-55	3.367013e-52
MsG0180000833.01	MsG0380017427.01	0.846532	2.047899e-59	3.535729e-56
MsG0180000834.01	MsG0380017427.01	0.839254	1.768783e-57	2.428770e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017427.01.T01	MTR_3g107397	60.000	80	8	1	1	56	61	140	5.89e-24	87.0
MsG0380017427.01.T01	MTR_4g114180	40.000	80	23	2	1	55	53	132	1.01e-11	55.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017427.01.T01	AT3G47650	43.750	80	21	1	1	56	57	136	4.46e-16	67.0

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Find 20 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGGAGCTGGATTTATCGG+TGG	0.609254	3:-96172793	MsG0380017427.01.T01:CDS
AGCACATATGACCAGTAGGG+AGG	0.624035	3:-96172763	MsG0380017427.01.T01:exon
ATGTTATGTGGGAATTGCAA+TGG	0.609174	3:-96172811	MsG0380017427.01.T01:CDS
CACTATCATACTGATGCTCA+AGG	0.627147	3:-96172585	MsG0380017427.01.T01:three_prime_UTR
CAGTTCACTTGTAGCCATAG+TGG	0.465843	3:-96172638	MsG0380017427.01.T01:three_prime_UTR
CTGAACTTGTTCGCAGTCGT+TGG	0.486092	3:+96172733	None:intergenic
CTTGAGCACATATGACCAGT+AGG	0.554604	3:-96172767	MsG0380017427.01.T01:exon
GCACATATGACCAGTAGGGA+GGG	0.642431	3:-96172762	MsG0380017427.01.T01:exon
GCAGGAAGGAGATGTTATGT+GGG	0.542628	3:-96172822	MsG0380017427.01.T01:CDS
GGCAGGAAGGAGATGTTATG+TGG	0.530714	3:-96172823	MsG0380017427.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGATTTACATGCTCATAA+CGG	+	Chr3:96172672-96172691	None:intergenic	30.0%
AATGTATTTGTGGTTGTTGA+AGG	-	Chr3:96172717-96172736	MsG0380017427.01.T01:three_prime_UTR	30.0%
TGCTTCTTGTAATGTATTTG+TGG	-	Chr3:96172707-96172726	MsG0380017427.01.T01:three_prime_UTR	30.0%
AAGGCTTCATTGTATTCTAG+AGG	+	Chr3:96173002-96173021	None:intergenic	35.0%
ATGTTATGTGGGAATTGCAA+TGG	-	Chr3:96173120-96173139	MsG0380017427.01.T01:intron	35.0%
ATTGTCTGCTCTCAATGCAA+AGG	-	Chr3:96172809-96172828	MsG0380017427.01.T01:CDS	40.0%
CACTATCATACTGATGCTCA+AGG	-	Chr3:96173346-96173365	MsG0380017427.01.T01:CDS	40.0%
TCAGCACAGATGACACTATT+TGG	+	Chr3:96172557-96172576	None:intergenic	40.0%
TGCAATGGAGCTGGATTTAT+CGG	-	Chr3:96173135-96173154	MsG0380017427.01.T01:intron	40.0%
TTGAGCACATATGACCAGTA+GGG	-	Chr3:96173165-96173184	MsG0380017427.01.T01:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	96172524	96173429	96172524	ID=MsG0380017427.01;Name=MsG0380017427.01
Chr3	mRNA	96172524	96173429	96172524	ID=MsG0380017427.01.T01;Parent=MsG0380017427.01;Name=MsG0380017427.01.T01;_AED=0.50;_eAED=0.52;_QI=0\|0\|0.5\|1\|0\|0\|2\|244\|56
Chr3	exon	96172524	96172846	96172524	ID=MsG0380017427.01.T01:exon:17451;Parent=MsG0380017427.01.T01
Chr3	exon	96173338	96173429	96173338	ID=MsG0380017427.01.T01:exon:17450;Parent=MsG0380017427.01.T01
Chr3	CDS	96173338	96173429	96173338	ID=MsG0380017427.01.T01:cds;Parent=MsG0380017427.01.T01
Chr3	CDS	96172768	96172846	96172768	ID=MsG0380017427.01.T01:cds;Parent=MsG0380017427.01.T01
Chr3	three_prime_UTR	96172524	96172767	96172524	ID=MsG0380017427.01.T01:three_prime_utr;Parent=MsG0380017427.01.T01

Gene Sequence	>MsG0380017427.01.T01 GCTACAAATGACAACCAACAAAACACAAAACCAAATAGTGTCATCTGTGCTGATTGTGATGGAAATGGTAAGATGACATATGATTTTATAAGAGGCAGGAAGGAGATGTTATGTGGGAATTGCAATGGAGCTGGATTTATCGGTGGCTTCTTGAGCACATATGACCAGTAG
Protein sequence	>MsG0380017427.01.T01 ATNDNQQNTKPNSVICADCDGNGKMTYDFIRGRKEMLCGNCNGAGFIGGFLSTYDQ*