Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007406.01.T01 | XP_013462892.1 | 78.453 | 181 | 21 | 2 | 1 | 171 | 1 | 173 | 1.74E-94 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007406.01.T01 | Q94AU9 | 65.289 | 121 | 34 | 1 | 50 | 170 | 59 | 171 | 5.80E-50 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007406.01.T01 | A0A072V552 | 78.453 | 181 | 21 | 2 | 1 | 171 | 1 | 173 | 8.32e-95 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048995.01 | MsG0280007406.01 | 0.828457 | 8.893745e-55 | 8.845401e-52 |
| MsG0080049070.01 | MsG0280007406.01 | 0.854637 | 1.078173e-61 | 2.423775e-58 |
| MsG0180001548.01 | MsG0280007406.01 | 0.888937 | 3.789200e-73 | 2.995560e-69 |
| MsG0180003196.01 | MsG0280007406.01 | 0.837291 | 5.667599e-57 | 7.328503e-54 |
| MsG0180003637.01 | MsG0280007406.01 | -0.829534 | 4.877414e-55 | 5.005843e-52 |
| MsG0180004121.01 | MsG0280007406.01 | -0.818806 | 1.617159e-52 | 1.222823e-49 |
| MsG0180004714.01 | MsG0280007406.01 | 0.844481 | 7.362941e-59 | 1.190311e-55 |
| MsG0180004792.01 | MsG0280007406.01 | 0.857344 | 1.739722e-62 | 4.280439e-59 |
| MsG0180004916.01 | MsG0280007406.01 | -0.801673 | 8.059626e-49 | 3.871784e-46 |
| MsG0180004979.01 | MsG0280007406.01 | 0.848121 | 7.501454e-60 | 1.362353e-56 |
| MsG0180005636.01 | MsG0280007406.01 | -0.805213 | 1.487894e-49 | 7.826337e-47 |
| MsG0180005666.01 | MsG0280007406.01 | 0.849782 | 2.591734e-60 | 4.968550e-57 |
| MsG0180006028.01 | MsG0280007406.01 | 0.882017 | 1.481432e-70 | 8.877984e-67 |
| MsG0180006217.01 | MsG0280007406.01 | 0.824944 | 6.132756e-54 | 5.512160e-51 |
| MsG0280007406.01 | MsG0280007598.01 | -0.814529 | 1.470976e-51 | 9.894644e-49 |
| MsG0280007406.01 | MsG0280008343.01 | 0.806620 | 7.529686e-50 | 4.105772e-47 |
| MsG0280007406.01 | MsG0280008452.01 | -0.807714 | 4.416747e-50 | 2.477799e-47 |
| MsG0280007406.01 | MsG0280009675.01 | 0.811972 | 5.356604e-51 | 3.363161e-48 |
| MsG0280007406.01 | MsG0280010468.01 | -0.806683 | 7.301313e-50 | 3.987748e-47 |
| MsG0280007406.01 | MsG0280011218.01 | 0.802666 | 5.035692e-49 | 2.480972e-46 |
| MsG0280007406.01 | MsG0380014678.01 | 0.814224 | 1.717929e-51 | 1.146027e-48 |
| MsG0280007406.01 | MsG0380015456.01 | 0.809757 | 1.615820e-50 | 9.568222e-48 |
| MsG0280007406.01 | MsG0380015972.01 | -0.818801 | 1.621427e-52 | 1.225885e-49 |
| MsG0280007406.01 | MsG0380016568.01 | 0.807325 | 5.342196e-50 | 2.966845e-47 |
| MsG0280007406.01 | MsG0380017362.01 | -0.800124 | 1.669468e-48 | 7.711868e-46 |
| MsG0280007406.01 | MsG0380017411.01 | -0.843032 | 1.798152e-58 | 2.777209e-55 |
| MsG0280007406.01 | MsG0380017427.01 | 0.884911 | 1.278735e-71 | 8.595973e-68 |
| MsG0280007406.01 | MsG0480018337.01 | 0.891768 | 2.938210e-74 | 2.611114e-70 |
| MsG0280007406.01 | MsG0480018338.01 | 0.888983 | 3.635544e-73 | 2.879546e-69 |
| MsG0280007406.01 | MsG0480019644.01 | 0.834040 | 3.772418e-56 | 4.423592e-53 |
| MsG0280007406.01 | MsG0480019812.01 | 0.901566 | 2.353466e-78 | 3.198112e-74 |
| MsG0280007406.01 | MsG0480020473.01 | 0.808811 | 2.577533e-50 | 1.488191e-47 |
| MsG0280007406.01 | MsG0480020596.01 | 0.849401 | 3.312089e-60 | 6.271111e-57 |
| MsG0280007406.01 | MsG0480021038.01 | 0.905563 | 3.762932e-80 | 6.120989e-76 |
| MsG0280007406.01 | MsG0480021124.01 | 0.823823 | 1.125349e-53 | 9.796229e-51 |
| MsG0280007406.01 | MsG0480021154.01 | -0.806515 | 7.925672e-50 | 4.310237e-47 |
| MsG0280007406.01 | MsG0480021213.01 | 0.893180 | 7.988696e-75 | 7.532295e-71 |
| MsG0280007406.01 | MsG0480021967.01 | 0.847898 | 8.642948e-60 | 1.558880e-56 |
| MsG0280007406.01 | MsG0480022113.01 | 0.869321 | 3.379485e-66 | 1.262969e-62 |
| MsG0280007406.01 | MsG0480022154.01 | 0.863772 | 1.961188e-64 | 6.016558e-61 |
| MsG0280007406.01 | MsG0480022162.01 | 0.804094 | 2.547201e-49 | 1.301832e-46 |
| MsG0280007406.01 | MsG0480023454.01 | -0.813004 | 3.186889e-51 | 2.056806e-48 |
| MsG0280007406.01 | MsG0480023466.01 | 0.842969 | 1.868581e-58 | 2.880345e-55 |
| MsG0280007406.01 | MsG0580024193.01 | -0.804767 | 1.844316e-49 | 9.590849e-47 |
| MsG0280007406.01 | MsG0580027183.01 | 0.859971 | 2.858432e-63 | 7.689441e-60 |
| MsG0280007406.01 | MsG0580027189.01 | 0.824056 | 9.925708e-54 | 8.696162e-51 |
| MsG0280007406.01 | MsG0580029511.01 | 0.831251 | 1.856013e-55 | 2.002757e-52 |
| MsG0280007406.01 | MsG0580029751.01 | 0.827218 | 1.766287e-54 | 1.694290e-51 |
| MsG0280007406.01 | MsG0580029760.01 | 0.820408 | 6.970217e-53 | 5.510788e-50 |
| MsG0280007406.01 | MsG0680030289.01 | -0.805401 | 1.359079e-49 | 7.183448e-47 |
| MsG0280007406.01 | MsG0680031826.01 | 0.803483 | 3.411593e-49 | 1.716432e-46 |
| MsG0280007406.01 | MsG0680032416.01 | 0.806392 | 8.412360e-50 | 4.560493e-47 |
| MsG0280007406.01 | MsG0680032850.01 | 0.824076 | 9.819417e-54 | 8.608393e-51 |
| MsG0280007406.01 | MsG0680033884.01 | 0.807676 | 4.499301e-50 | 2.521575e-47 |
| MsG0280007406.01 | MsG0780035976.01 | -0.867093 | 1.763460e-65 | 6.081419e-62 |
| MsG0280007406.01 | MsG0780037507.01 | 0.821502 | 3.901595e-53 | 3.179748e-50 |
| MsG0280007406.01 | MsG0780040550.01 | 0.805961 | 1.036419e-49 | 5.557586e-47 |
| MsG0280007406.01 | MsG0780040684.01 | 0.804712 | 1.894031e-49 | 9.835130e-47 |
| MsG0280007406.01 | MsG0780040965.01 | 0.807558 | 4.767372e-50 | 2.663536e-47 |
| MsG0280007406.01 | MsG0780041331.01 | 0.855947 | 4.480498e-62 | 1.052162e-58 |
| MsG0280007406.01 | MsG0780041361.01 | 0.813137 | 2.980936e-51 | 1.930661e-48 |
| MsG0280007406.01 | MsG0880041847.01 | 0.855245 | 7.178646e-62 | 1.646661e-58 |
| MsG0280007406.01 | MsG0880042415.01 | 0.840460 | 8.582963e-58 | 1.223423e-54 |
| MsG0280007406.01 | MsG0880043056.01 | 0.833348 | 5.616376e-56 | 6.451067e-53 |
| MsG0280007406.01 | MsG0880043476.01 | 0.847686 | 9.885275e-60 | 1.771147e-56 |
| MsG0280007406.01 | MsG0880045312.01 | 0.830245 | 3.273748e-55 | 3.430102e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007406.01.T01 | MTR_2g024300 | 78.453 | 181 | 21 | 2 | 1 | 171 | 1 | 173 | 2.11e-98 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007406.01.T01 | AT4G04330 | 65.289 | 121 | 34 | 1 | 50 | 170 | 59 | 171 | 5.91e-51 | 161 |
Find 49 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACTCCCATGTCTTCTTAA+TGG | 0.242605 | 2:+14997209 | MsG0280007406.01.T01:three_prime_UTR |
| CAGATTTGTCCAACCACTTA+TGG | 0.272786 | 2:-14997167 | None:intergenic |
| CTCTTGCCAGCTGGCCAAAA+AGG | 0.282297 | 2:-14995956 | None:intergenic |
| ATATTGATATGTATGGAAAT+TGG | 0.302745 | 2:+14997055 | MsG0280007406.01.T01:three_prime_UTR |
| TGTCCCATTCAAAATCCTTT+TGG | 0.366494 | 2:-14996762 | None:intergenic |
| GACTCCCATGTCTTCTTAAT+GGG | 0.375531 | 2:+14997210 | MsG0280007406.01.T01:three_prime_UTR |
| TGAAGCATATGTTGAGCTAA+TGG | 0.380963 | 2:+14996392 | MsG0280007406.01.T01:CDS |
| TTGTTGGTGCATGGTGTAGC+AGG | 0.403399 | 2:-14995926 | None:intergenic |
| ACTCTAACACGAGGCTTATG+AGG | 0.410584 | 2:+14996930 | MsG0280007406.01.T01:CDS |
| ATTAGCTCAACATATGCTTC+AGG | 0.434378 | 2:-14996390 | None:intergenic |
| AAATCGAGTTAGACCATAAG+TGG | 0.434411 | 2:+14997154 | MsG0280007406.01.T01:three_prime_UTR |
| GTGCAACATATTGATATGTA+TGG | 0.445645 | 2:+14997048 | MsG0280007406.01.T01:three_prime_UTR |
| GAGCTCCTTCTCTTGCCAGC+TGG | 0.451237 | 2:-14995965 | None:intergenic |
| TTGAATAGCCCTACGCATAA+TGG | 0.455624 | 2:+14996633 | MsG0280007406.01.T01:intron |
| CTTCTCAGTTTCAGAACGAC+TGG | 0.465661 | 2:-14996969 | None:intergenic |
| GAAAGGGCTTGCTTTGCTGC+AGG | 0.490075 | 2:-14997000 | None:intergenic |
| TTCGATCAATGGGAATGAAA+GGG | 0.495924 | 2:-14997016 | None:intergenic |
| GTTCGATCAATGGGAATGAA+AGG | 0.498668 | 2:-14997017 | None:intergenic |
| TGTTGAGCTAATGGAATTTG+TGG | 0.500110 | 2:+14996401 | MsG0280007406.01.T01:CDS |
| TACATAGCTCAGTGTTTGCA+TGG | 0.509009 | 2:+14997118 | MsG0280007406.01.T01:three_prime_UTR |
| TACATATCAATATGTTGCAC+AGG | 0.515031 | 2:-14997045 | None:intergenic |
| ACTTGTCACCATCATCTAAC+GGG | 0.516413 | 2:-14996431 | None:intergenic |
| CATTTACCTCCATTATGCGT+AGG | 0.520633 | 2:-14996642 | None:intergenic |
| TCATCAAGACATAAGAACTT+AGG | 0.525555 | 2:+14996477 | MsG0280007406.01.T01:CDS |
| GGTGTAGCAGGGTAAACATA+AGG | 0.525917 | 2:-14995914 | None:intergenic |
| ATTTACCTCCATTATGCGTA+GGG | 0.537053 | 2:-14996641 | None:intergenic |
| ATGTATGGAAATTGGAAAGA+TGG | 0.540841 | 2:+14997063 | MsG0280007406.01.T01:three_prime_UTR |
| TTTGGCCAGCTGGCAAGAGA+AGG | 0.542150 | 2:+14995960 | MsG0280007406.01.T01:CDS |
| AATCGTTGCTGCTCAACTTG+AGG | 0.547786 | 2:+14996204 | MsG0280007406.01.T01:CDS |
| GAGATCAGCATACTGCCAAA+AGG | 0.559923 | 2:+14996747 | MsG0280007406.01.T01:CDS |
| AGAAGCAACACCGGAAGCAA+AGG | 0.569743 | 2:+14996139 | MsG0280007406.01.T01:CDS |
| AACTTGTCACCATCATCTAA+CGG | 0.580454 | 2:-14996432 | None:intergenic |
| TTCTGAAACTGAGAAGTGAA+TGG | 0.580741 | 2:+14996976 | MsG0280007406.01.T01:exon |
| AGTATCCCATTAAGAAGACA+TGG | 0.584140 | 2:-14997215 | None:intergenic |
| TAGAGCTGAAGATGATTCCA+TGG | 0.584821 | 2:-14995876 | None:intergenic |
| CGAGTTAGACCATAAGTGGT+TGG | 0.590124 | 2:+14997158 | MsG0280007406.01.T01:three_prime_UTR |
| CTCTAACACGAGGCTTATGA+GGG | 0.595924 | 2:+14996931 | MsG0280007406.01.T01:CDS |
| TGTTGGTGCATGGTGTAGCA+GGG | 0.612247 | 2:-14995925 | None:intergenic |
| AGGATTCGGAGAAGCAACAC+CGG | 0.623746 | 2:+14996130 | MsG0280007406.01.T01:intron |
| TGGCAGAAGACTCACTCGCA+TGG | 0.631217 | 2:+14997083 | MsG0280007406.01.T01:three_prime_UTR |
| GCTTATGAGGGATTACGTCT+CGG | 0.635882 | 2:+14996943 | MsG0280007406.01.T01:CDS |
| GATAAACACCCGTTAGATGA+TGG | 0.636151 | 2:+14996423 | MsG0280007406.01.T01:CDS |
| TGATGATTCTCTGAACATAG+TGG | 0.639406 | 2:-14996460 | None:intergenic |
| AATAGCCCTACGCATAATGG+AGG | 0.664082 | 2:+14996636 | MsG0280007406.01.T01:intron |
| GCAGTGTAGGTGAAGAATTG+TGG | 0.667362 | 2:-14996175 | None:intergenic |
| GTATCCCATTAAGAAGACAT+GGG | 0.697518 | 2:-14997214 | None:intergenic |
| GGAGCTCTCAATTATCCACA+CGG | 0.710162 | 2:+14995981 | MsG0280007406.01.T01:CDS |
| GTGTAGGTGAAGAATTGTGG+AGG | 0.711984 | 2:-14996172 | None:intergenic |
| TGGTCACTGACTCTAACACG+AGG | 0.758847 | 2:+14996921 | MsG0280007406.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGGTGTAATATTATATAT+AGG | + | Chr2:14996723-14996742 | MsG0280007406.01.T01:intron | 15.0% |
| !! | AAAACAAACTAAAACAACAA+AGG | - | Chr2:14996248-14996267 | None:intergenic | 20.0% |
| !! | ATATTGATATGTATGGAAAT+TGG | + | Chr2:14997055-14997074 | MsG0280007406.01.T01:three_prime_UTR | 20.0% |
| !! | TAATAGACACTTAACTATTA+AGG | - | Chr2:14996529-14996548 | None:intergenic | 20.0% |
| ! | AAAACAACAAAGGCAAATAA+AGG | - | Chr2:14996238-14996257 | None:intergenic | 25.0% |
| ! | AACAGTTACATGCATTATTA+AGG | - | Chr2:14996879-14996898 | None:intergenic | 25.0% |
| ! | ACACTTAACTATTAAGGATT+GGG | - | Chr2:14996523-14996542 | None:intergenic | 25.0% |
| ! | ATACGAAAAATAACACAACT+AGG | - | Chr2:14996292-14996311 | None:intergenic | 25.0% |
| ! | GGAAGTTGAATAAATTTAGT+AGG | - | Chr2:14996858-14996877 | None:intergenic | 25.0% |
| ! | TAACCAACAACTATTCTATA+TGG | + | Chr2:14996551-14996570 | MsG0280007406.01.T01:intron | 25.0% |
| ! | TACGAAAAATAACACAACTA+GGG | - | Chr2:14996291-14996310 | None:intergenic | 25.0% |
| !! | AAAACTTGCTTAATAAGTGA+TGG | - | Chr2:14996691-14996710 | None:intergenic | 25.0% |
| !! | TTACAACTTCAATTTTGTAC+TGG | + | Chr2:14996037-14996056 | MsG0280007406.01.T01:intron | 25.0% |
| !!! | AGTTTTGATTGAGTATACTA+TGG | + | Chr2:14996705-14996724 | MsG0280007406.01.T01:intron | 25.0% |
| AAGACATAAGAACTTAGGTA+AGG | + | Chr2:14996482-14996501 | MsG0280007406.01.T01:intron | 30.0% | |
| AATAGTGTGCTATGTTATCT+TGG | + | Chr2:14996103-14996122 | MsG0280007406.01.T01:intron | 30.0% | |
| ATGTATGGAAATTGGAAAGA+TGG | + | Chr2:14997063-14997082 | MsG0280007406.01.T01:three_prime_UTR | 30.0% | |
| GACACTTAACTATTAAGGAT+TGG | - | Chr2:14996524-14996543 | None:intergenic | 30.0% | |
| GTGCAACATATTGATATGTA+TGG | + | Chr2:14997048-14997067 | MsG0280007406.01.T01:three_prime_UTR | 30.0% | |
| TACATATCAATATGTTGCAC+AGG | - | Chr2:14997048-14997067 | None:intergenic | 30.0% | |
| TCACCATATAGAATAGTTGT+TGG | - | Chr2:14996557-14996576 | None:intergenic | 30.0% | |
| TCATCAAGACATAAGAACTT+AGG | + | Chr2:14996477-14996496 | MsG0280007406.01.T01:CDS | 30.0% | |
| !! | AACTTCAATTTTGTACTGGT+TGG | + | Chr2:14996041-14996060 | MsG0280007406.01.T01:intron | 30.0% |
| AAATCCTGTAAACTGATGTG+TGG | + | Chr2:14996593-14996612 | MsG0280007406.01.T01:intron | 35.0% | |
| AAATCGAGTTAGACCATAAG+TGG | + | Chr2:14997154-14997173 | MsG0280007406.01.T01:three_prime_UTR | 35.0% | |
| AACTTGTCACCATCATCTAA+CGG | - | Chr2:14996435-14996454 | None:intergenic | 35.0% | |
| ACAAAATGTTTGTACCTGGT+CGG | + | Chr2:14996013-14996032 | MsG0280007406.01.T01:intron | 35.0% | |
| ACAACAAAGGCAAATAAAGG+AGG | - | Chr2:14996235-14996254 | None:intergenic | 35.0% | |
| AGTATCCCATTAAGAAGACA+TGG | - | Chr2:14997218-14997237 | None:intergenic | 35.0% | |
| ATGCACAAAATGTTTGTACC+TGG | + | Chr2:14996009-14996028 | MsG0280007406.01.T01:intron | 35.0% | |
| ATTAGCTCAACATATGCTTC+AGG | - | Chr2:14996393-14996412 | None:intergenic | 35.0% | |
| ATTTACCTCCATTATGCGTA+GGG | - | Chr2:14996644-14996663 | None:intergenic | 35.0% | |
| GTATCCCATTAAGAAGACAT+GGG | - | Chr2:14997217-14997236 | None:intergenic | 35.0% | |
| TGAAGCATATGTTGAGCTAA+TGG | + | Chr2:14996392-14996411 | MsG0280007406.01.T01:CDS | 35.0% | |
| TGATGATTCTCTGAACATAG+TGG | - | Chr2:14996463-14996482 | None:intergenic | 35.0% | |
| TGTTGAGCTAATGGAATTTG+TGG | + | Chr2:14996401-14996420 | MsG0280007406.01.T01:CDS | 35.0% | |
| TTCGATCAATGGGAATGAAA+GGG | - | Chr2:14997019-14997038 | None:intergenic | 35.0% | |
| ! | ACTGCCAAAAGGATTTTGAA+TGG | + | Chr2:14996758-14996777 | MsG0280007406.01.T01:CDS | 35.0% |
| ! | CCAAAAAGGATAGCTTTTGT+TGG | - | Chr2:14995945-14995964 | None:intergenic | 35.0% |
| ! | CCAACAAAAGCTATCCTTTT+TGG | + | Chr2:14995942-14995961 | MsG0280007406.01.T01:CDS | 35.0% |
| ! | CTGCCAAAAGGATTTTGAAT+GGG | + | Chr2:14996759-14996778 | MsG0280007406.01.T01:CDS | 35.0% |
| ! | TGAAGAATTGTGGAGGTTTT+TGG | - | Chr2:14996168-14996187 | None:intergenic | 35.0% |
| ! | TGTCCCATTCAAAATCCTTT+TGG | - | Chr2:14996765-14996784 | None:intergenic | 35.0% |
| !! | TTCTGAAACTGAGAAGTGAA+TGG | + | Chr2:14996976-14996995 | MsG0280007406.01.T01:exon | 35.0% |
| !!! | AACGATTTTAACTGCAGTGT+AGG | - | Chr2:14996191-14996210 | None:intergenic | 35.0% |
| !!! | CTTGAAGCGTTTAGCTTTTA+AGG | + | Chr2:14996786-14996805 | MsG0280007406.01.T01:CDS | 35.0% |
| ACTTGTCACCATCATCTAAC+GGG | - | Chr2:14996434-14996453 | None:intergenic | 40.0% | |
| ATTGAAGTTGTAAACCGACC+AGG | - | Chr2:14996030-14996049 | None:intergenic | 40.0% | |
| CAGATTTGTCCAACCACTTA+TGG | - | Chr2:14997170-14997189 | None:intergenic | 40.0% | |
| CAGGATTATAACTCTGCTCA+TGG | - | Chr2:14996374-14996393 | None:intergenic | 40.0% | |
| CATTTACCTCCATTATGCGT+AGG | - | Chr2:14996645-14996664 | None:intergenic | 40.0% | |
| GACTCCCATGTCTTCTTAAT+GGG | + | Chr2:14997210-14997229 | MsG0280007406.01.T01:three_prime_UTR | 40.0% | |
| GAGGTAAATGGATGACTAGT+TGG | + | Chr2:14996655-14996674 | MsG0280007406.01.T01:intron | 40.0% | |
| GATAAACACCCGTTAGATGA+TGG | + | Chr2:14996423-14996442 | MsG0280007406.01.T01:CDS | 40.0% | |
| GTTATCTTGGATGCAGGATT+CGG | + | Chr2:14996116-14996135 | MsG0280007406.01.T01:intron | 40.0% | |
| GTTCGATCAATGGGAATGAA+AGG | - | Chr2:14997020-14997039 | None:intergenic | 40.0% | |
| TACATAGCTCAGTGTTTGCA+TGG | + | Chr2:14997118-14997137 | MsG0280007406.01.T01:three_prime_UTR | 40.0% | |
| TGCTATGTTATCTTGGATGC+AGG | + | Chr2:14996110-14996129 | MsG0280007406.01.T01:intron | 40.0% | |
| TTGAATAGCCCTACGCATAA+TGG | + | Chr2:14996633-14996652 | MsG0280007406.01.T01:intron | 40.0% | |
| ! | ACAGGCTTTTGTTCGATCAA+TGG | - | Chr2:14997030-14997049 | None:intergenic | 40.0% |
| ! | CAGGCTTTTGTTCGATCAAT+GGG | - | Chr2:14997029-14997048 | None:intergenic | 40.0% |
| ! | CTACGCATAATGGAGGTAAA+TGG | + | Chr2:14996643-14996662 | MsG0280007406.01.T01:intron | 40.0% |
| AATAGCCCTACGCATAATGG+AGG | + | Chr2:14996636-14996655 | MsG0280007406.01.T01:intron | 45.0% | |
| AATCGTTGCTGCTCAACTTG+AGG | + | Chr2:14996204-14996223 | MsG0280007406.01.T01:CDS | 45.0% | |
| ACTCTAACACGAGGCTTATG+AGG | + | Chr2:14996930-14996949 | MsG0280007406.01.T01:CDS | 45.0% | |
| AGAGCCACACATCAGTTTAC+AGG | - | Chr2:14996600-14996619 | None:intergenic | 45.0% | |
| AGTCAGTGACCATCTACAAG+AGG | - | Chr2:14996913-14996932 | None:intergenic | 45.0% | |
| CGACTCCCATGTCTTCTTAA+TGG | + | Chr2:14997209-14997228 | MsG0280007406.01.T01:three_prime_UTR | 45.0% | |
| CGAGTTAGACCATAAGTGGT+TGG | + | Chr2:14997158-14997177 | MsG0280007406.01.T01:three_prime_UTR | 45.0% | |
| CTCTAACACGAGGCTTATGA+GGG | + | Chr2:14996931-14996950 | MsG0280007406.01.T01:CDS | 45.0% | |
| CTTCTCAGTTTCAGAACGAC+TGG | - | Chr2:14996972-14996991 | None:intergenic | 45.0% | |
| GAGATCAGCATACTGCCAAA+AGG | + | Chr2:14996747-14996766 | MsG0280007406.01.T01:CDS | 45.0% | |
| GCAGTGTAGGTGAAGAATTG+TGG | - | Chr2:14996178-14996197 | None:intergenic | 45.0% | |
| GCTTATGAGGGATTACGTCT+CGG | + | Chr2:14996943-14996962 | MsG0280007406.01.T01:CDS | 45.0% | |
| GGAGCTCTCAATTATCCACA+CGG | + | Chr2:14995981-14996000 | MsG0280007406.01.T01:CDS | 45.0% | |
| GGTGTAGCAGGGTAAACATA+AGG | - | Chr2:14995917-14995936 | None:intergenic | 45.0% | |
| GTGTAGGTGAAGAATTGTGG+AGG | - | Chr2:14996175-14996194 | None:intergenic | 45.0% | |
| TAGCGTTGTCCTCTTGTAGA+TGG | + | Chr2:14996901-14996920 | MsG0280007406.01.T01:intron | 45.0% | |
| ! | GGATAGCTTTTGTTGGTGCA+TGG | - | Chr2:14995938-14995957 | None:intergenic | 45.0% |
| ! | TTTTGTGCATTGCAACCGTG+TGG | - | Chr2:14995999-14996018 | None:intergenic | 45.0% |
| !! | TTTTTGGCAGCCTTTGCTTC+CGG | - | Chr2:14996152-14996171 | None:intergenic | 45.0% |
| AGAAGCAACACCGGAAGCAA+AGG | + | Chr2:14996139-14996158 | MsG0280007406.01.T01:CDS | 50.0% | |
| AGGATTCGGAGAAGCAACAC+CGG | + | Chr2:14996130-14996149 | MsG0280007406.01.T01:intron | 50.0% | |
| TGTTGGTGCATGGTGTAGCA+GGG | - | Chr2:14995928-14995947 | None:intergenic | 50.0% | |
| TTGTTGGTGCATGGTGTAGC+AGG | - | Chr2:14995929-14995948 | None:intergenic | 50.0% | |
| !! | ACTGATGTGTGGCTCTGACA+TGG | + | Chr2:14996604-14996623 | MsG0280007406.01.T01:intron | 50.0% |
| !! | AGCTATCCTTTTTGGCCAGC+TGG | + | Chr2:14995950-14995969 | MsG0280007406.01.T01:CDS | 50.0% |
| !! | TGGTCACTGACTCTAACACG+AGG | + | Chr2:14996921-14996940 | MsG0280007406.01.T01:CDS | 50.0% |
| CTCTTGCCAGCTGGCCAAAA+AGG | - | Chr2:14995959-14995978 | None:intergenic | 55.0% | |
| TGGCAGAAGACTCACTCGCA+TGG | + | Chr2:14997083-14997102 | MsG0280007406.01.T01:three_prime_UTR | 55.0% | |
| TTTGGCCAGCTGGCAAGAGA+AGG | + | Chr2:14995960-14995979 | MsG0280007406.01.T01:CDS | 55.0% | |
| ! | GAAAGGGCTTGCTTTGCTGC+AGG | - | Chr2:14997003-14997022 | None:intergenic | 55.0% |
| GAGCTCCTTCTCTTGCCAGC+TGG | - | Chr2:14995968-14995987 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 14995878 | 14997291 | 14995878 | ID=MsG0280007406.01;Name=MsG0280007406.01 |
| Chr2 | mRNA | 14995878 | 14997291 | 14995878 | ID=MsG0280007406.01.T01;Parent=MsG0280007406.01;Name=MsG0280007406.01.T01;_AED=0.27;_eAED=0.28;_QI=0|0.6|0.66|1|0|0|6|297|171 |
| Chr2 | exon | 14995878 | 14996002 | 14995878 | ID=MsG0280007406.01.T01:exon:3187;Parent=MsG0280007406.01.T01 |
| Chr2 | exon | 14996132 | 14996225 | 14996132 | ID=MsG0280007406.01.T01:exon:3188;Parent=MsG0280007406.01.T01 |
| Chr2 | exon | 14996381 | 14996498 | 14996381 | ID=MsG0280007406.01.T01:exon:3189;Parent=MsG0280007406.01.T01 |
| Chr2 | exon | 14996641 | 14996657 | 14996641 | ID=MsG0280007406.01.T01:exon:3190;Parent=MsG0280007406.01.T01 |
| Chr2 | exon | 14996745 | 14996831 | 14996745 | ID=MsG0280007406.01.T01:exon:3191;Parent=MsG0280007406.01.T01 |
| Chr2 | exon | 14996920 | 14997291 | 14996920 | ID=MsG0280007406.01.T01:exon:3192;Parent=MsG0280007406.01.T01 |
| Chr2 | CDS | 14995878 | 14996002 | 14995878 | ID=MsG0280007406.01.T01:cds;Parent=MsG0280007406.01.T01 |
| Chr2 | CDS | 14996132 | 14996225 | 14996132 | ID=MsG0280007406.01.T01:cds;Parent=MsG0280007406.01.T01 |
| Chr2 | CDS | 14996381 | 14996498 | 14996381 | ID=MsG0280007406.01.T01:cds;Parent=MsG0280007406.01.T01 |
| Chr2 | CDS | 14996641 | 14996657 | 14996641 | ID=MsG0280007406.01.T01:cds;Parent=MsG0280007406.01.T01 |
| Chr2 | CDS | 14996745 | 14996831 | 14996745 | ID=MsG0280007406.01.T01:cds;Parent=MsG0280007406.01.T01 |
| Chr2 | CDS | 14996920 | 14996994 | 14996920 | ID=MsG0280007406.01.T01:cds;Parent=MsG0280007406.01.T01 |
| Chr2 | three_prime_UTR | 14996995 | 14997291 | 14996995 | ID=MsG0280007406.01.T01:three_prime_utr;Parent=MsG0280007406.01.T01 |
| Gene Sequence |
| Protein sequence |
