Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030524.01.T01 | RHN70244.1 | 67.29 | 107 | 27 | 1 | 1 | 99 | 1237 | 1343 | 8.08E-38 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030524.01.T01 | Q9FWQ5 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1599 | 1692 | 2.04E-23 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030524.01.T01 | A0A396J0M7 | 67.290 | 107 | 27 | 1 | 1 | 99 | 1237 | 1343 | 3.86e-38 | 149 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0680030524.01.T01 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002234.01 | MsG0680030524.01 | 0.814665 | 1.372322e-51 | 9.264461e-49 |
| MsG0480018664.01 | MsG0680030524.01 | 0.808725 | 2.689034e-50 | 1.549014e-47 |
| MsG0380016274.01 | MsG0680030524.01 | 0.802703 | 4.945648e-49 | 2.439107e-46 |
| MsG0380017312.01 | MsG0680030524.01 | 0.805680 | 1.187548e-49 | 6.322209e-47 |
| MsG0580026222.01 | MsG0680030524.01 | 0.806132 | 9.542670e-50 | 5.139251e-47 |
| MsG0580027332.01 | MsG0680030524.01 | 0.801549 | 8.546318e-49 | 4.092706e-46 |
| MsG0580029381.01 | MsG0680030524.01 | 0.827442 | 1.561392e-54 | 1.507628e-51 |
| MsG0580029899.01 | MsG0680030524.01 | 0.802034 | 6.794224e-49 | 3.294043e-46 |
| MsG0680030524.01 | MsG0780037606.01 | 0.807162 | 5.784798e-50 | 3.198927e-47 |
| MsG0680030524.01 | MsG0780039282.01 | 0.848046 | 7.867614e-60 | 1.425493e-56 |
| MsG0280006551.01 | MsG0680030524.01 | 0.813141 | 2.974727e-51 | 1.926847e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030524.01.T01 | MTR_3g101100 | 67.290 | 107 | 27 | 1 | 1 | 99 | 1289 | 1395 | 1.15e-41 | 149 |
| MsG0680030524.01.T01 | MTR_6g017010 | 71.569 | 102 | 19 | 1 | 1 | 92 | 664 | 765 | 3.29e-41 | 147 |
| MsG0680030524.01.T01 | MTR_3g107960 | 64.486 | 107 | 30 | 1 | 1 | 99 | 1100 | 1206 | 8.95e-41 | 146 |
| MsG0680030524.01.T01 | MTR_5g085310 | 76.667 | 90 | 13 | 1 | 2 | 83 | 936 | 1025 | 1.73e-40 | 145 |
| MsG0680030524.01.T01 | MTR_6g017130 | 85.246 | 61 | 8 | 1 | 22 | 81 | 330 | 390 | 2.68e-29 | 111 |
| MsG0680030524.01.T01 | MTR_6g089560 | 57.333 | 75 | 32 | 0 | 102 | 176 | 117 | 191 | 1.93e-26 | 100 |
| MsG0680030524.01.T01 | MTR_1g017840 | 53.333 | 75 | 35 | 0 | 102 | 176 | 79 | 153 | 9.81e-25 | 94.4 |
| MsG0680030524.01.T01 | MTR_0093s0070 | 53.846 | 78 | 36 | 0 | 99 | 176 | 121 | 198 | 1.06e-23 | 92.8 |
| MsG0680030524.01.T01 | MTR_1g047940 | 58.242 | 91 | 18 | 2 | 1 | 89 | 126 | 198 | 1.16e-23 | 92.8 |
| MsG0680030524.01.T01 | MTR_7g013520 | 48.235 | 85 | 44 | 0 | 92 | 176 | 61 | 145 | 6.81e-23 | 90.1 |
| MsG0680030524.01.T01 | MTR_8g099580 | 50.000 | 84 | 42 | 0 | 93 | 176 | 198 | 281 | 2.11e-22 | 91.7 |
| MsG0680030524.01.T01 | MTR_8g098925 | 35.507 | 138 | 80 | 3 | 47 | 176 | 4 | 140 | 3.38e-22 | 87.8 |
| MsG0680030524.01.T01 | MTR_4g005050 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1602 | 1695 | 3.95e-21 | 90.1 |
| MsG0680030524.01.T01 | MTR_1g022215 | 57.143 | 56 | 24 | 0 | 102 | 157 | 15 | 70 | 1.31e-19 | 79.0 |
| MsG0680030524.01.T01 | MTR_5g037920 | 54.167 | 72 | 32 | 1 | 105 | 176 | 102 | 172 | 1.74e-19 | 82.4 |
| MsG0680030524.01.T01 | MTR_5g034450 | 53.333 | 60 | 28 | 0 | 101 | 160 | 49 | 108 | 3.26e-17 | 73.6 |
| MsG0680030524.01.T01 | MTR_2g017550 | 50.820 | 61 | 30 | 0 | 93 | 153 | 100 | 160 | 3.56e-16 | 72.4 |
| MsG0680030524.01.T01 | MTR_8g059135 | 47.222 | 72 | 38 | 0 | 104 | 175 | 31 | 102 | 1.07e-15 | 70.1 |
| MsG0680030524.01.T01 | MTR_6g016265 | 44.048 | 84 | 47 | 0 | 93 | 176 | 31 | 114 | 1.22e-15 | 69.7 |
| MsG0680030524.01.T01 | MTR_4g029360 | 45.455 | 77 | 42 | 0 | 100 | 176 | 126 | 202 | 1.73e-15 | 71.6 |
| MsG0680030524.01.T01 | MTR_6g033225 | 44.776 | 67 | 37 | 0 | 103 | 169 | 72 | 138 | 8.29e-15 | 68.2 |
| MsG0680030524.01.T01 | MTR_4g008270 | 40.789 | 76 | 45 | 0 | 101 | 176 | 10 | 85 | 1.98e-14 | 65.9 |
| MsG0680030524.01.T01 | MTR_7g063280 | 40.789 | 76 | 45 | 0 | 101 | 176 | 72 | 147 | 2.05e-14 | 67.8 |
| MsG0680030524.01.T01 | MTR_6g453270 | 43.056 | 72 | 41 | 0 | 105 | 176 | 304 | 375 | 2.15e-14 | 70.1 |
| MsG0680030524.01.T01 | MTR_2g055490 | 52.632 | 57 | 27 | 0 | 106 | 162 | 12 | 68 | 3.31e-14 | 65.9 |
| MsG0680030524.01.T01 | MTR_5g049680 | 36.471 | 85 | 53 | 1 | 93 | 176 | 23 | 107 | 2.04e-13 | 63.5 |
| MsG0680030524.01.T01 | MTR_3g116210 | 36.905 | 84 | 53 | 0 | 93 | 176 | 89 | 172 | 2.43e-13 | 65.5 |
| MsG0680030524.01.T01 | MTR_1g088650 | 43.836 | 73 | 41 | 0 | 104 | 176 | 89 | 161 | 2.70e-13 | 65.1 |
| MsG0680030524.01.T01 | MTR_2g059470 | 40.541 | 74 | 44 | 0 | 103 | 176 | 2 | 75 | 4.07e-13 | 62.0 |
| MsG0680030524.01.T01 | MTR_1g018300 | 45.238 | 84 | 40 | 1 | 93 | 176 | 55 | 132 | 4.20e-13 | 65.9 |
| MsG0680030524.01.T01 | MTR_5g075610 | 43.939 | 66 | 35 | 1 | 107 | 172 | 1 | 64 | 7.06e-13 | 62.0 |
| MsG0680030524.01.T01 | MTR_1g069475 | 38.356 | 73 | 45 | 0 | 104 | 176 | 167 | 239 | 1.15e-12 | 64.3 |
| MsG0680030524.01.T01 | MTR_2g027020 | 40.789 | 76 | 41 | 1 | 101 | 176 | 28 | 99 | 1.89e-12 | 62.8 |
| MsG0680030524.01.T01 | MTR_5g083200 | 39.726 | 73 | 44 | 0 | 104 | 176 | 101 | 173 | 2.18e-12 | 62.8 |
| MsG0680030524.01.T01 | MTR_0002s1220 | 39.726 | 73 | 44 | 0 | 104 | 176 | 101 | 173 | 2.18e-12 | 62.8 |
| MsG0680030524.01.T01 | MTR_6g045427 | 62.791 | 43 | 16 | 0 | 134 | 176 | 178 | 220 | 2.67e-12 | 63.2 |
| MsG0680030524.01.T01 | MTR_3g111390 | 39.726 | 73 | 44 | 0 | 104 | 176 | 101 | 173 | 3.18e-12 | 62.4 |
| MsG0680030524.01.T01 | MTR_1g070820 | 39.726 | 73 | 44 | 0 | 104 | 176 | 101 | 173 | 3.18e-12 | 62.4 |
| MsG0680030524.01.T01 | MTR_1g045340 | 39.726 | 73 | 44 | 0 | 104 | 176 | 87 | 159 | 3.87e-12 | 62.0 |
| MsG0680030524.01.T01 | MTR_1g050488 | 34.667 | 75 | 49 | 0 | 93 | 167 | 90 | 164 | 1.32e-11 | 60.1 |
| MsG0680030524.01.T01 | MTR_5g015680 | 35.644 | 101 | 53 | 5 | 16 | 112 | 188 | 280 | 1.39e-11 | 61.6 |
| MsG0680030524.01.T01 | MTR_5g015680 | 35.644 | 101 | 53 | 5 | 16 | 112 | 283 | 375 | 1.60e-11 | 62.0 |
| MsG0680030524.01.T01 | MTR_1g034430 | 24.590 | 122 | 89 | 1 | 55 | 176 | 52 | 170 | 1.81e-11 | 60.1 |
| MsG0680030524.01.T01 | MTR_5g015680 | 35.644 | 101 | 53 | 5 | 16 | 112 | 322 | 414 | 1.82e-11 | 62.0 |
| MsG0680030524.01.T01 | MTR_5g036320 | 50.000 | 60 | 30 | 0 | 101 | 160 | 79 | 138 | 4.45e-11 | 58.2 |
| MsG0680030524.01.T01 | MTR_0015s0120 | 38.272 | 81 | 50 | 0 | 93 | 173 | 285 | 365 | 8.35e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1573 | 1666 | 2.02e-24 | 99.8 |
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1573 | 1666 | 2.02e-24 | 99.8 |
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1573 | 1666 | 2.02e-24 | 99.8 |
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1573 | 1666 | 2.02e-24 | 99.8 |
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1570 | 1663 | 2.08e-24 | 99.8 |
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1599 | 1692 | 2.08e-24 | 99.8 |
| MsG0680030524.01.T01 | AT1G79000 | 46.809 | 94 | 45 | 2 | 3 | 91 | 1590 | 1683 | 2.29e-24 | 99.4 |
| MsG0680030524.01.T01 | AT1G79000 | 46.809 | 94 | 45 | 2 | 3 | 91 | 1590 | 1683 | 2.32e-24 | 99.4 |
| MsG0680030524.01.T01 | AT1G79000 | 46.809 | 94 | 45 | 2 | 3 | 91 | 1566 | 1659 | 2.36e-24 | 99.4 |
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1534 | 1627 | 2.72e-24 | 99.4 |
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1534 | 1627 | 2.72e-24 | 99.4 |
| MsG0680030524.01.T01 | AT1G16710 | 44.681 | 94 | 47 | 1 | 3 | 91 | 1534 | 1627 | 2.72e-24 | 99.4 |
| MsG0680030524.01.T01 | AT3G12980 | 38.298 | 94 | 50 | 2 | 3 | 91 | 1565 | 1655 | 7.42e-16 | 75.1 |
| MsG0680030524.01.T01 | AT3G12980 | 38.298 | 94 | 50 | 2 | 3 | 91 | 1484 | 1574 | 8.79e-16 | 74.7 |
| MsG0680030524.01.T01 | AT5G67480 | 43.939 | 66 | 36 | 1 | 19 | 83 | 280 | 345 | 7.92e-12 | 62.8 |
| MsG0680030524.01.T01 | AT5G67480 | 43.939 | 66 | 36 | 1 | 19 | 83 | 280 | 345 | 7.92e-12 | 62.8 |
| MsG0680030524.01.T01 | AT5G67480 | 43.939 | 66 | 36 | 1 | 19 | 83 | 291 | 356 | 8.01e-12 | 62.8 |
| MsG0680030524.01.T01 | AT1G55970 | 34.043 | 94 | 59 | 1 | 11 | 104 | 1380 | 1470 | 9.97e-11 | 60.1 |
Find 23 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTATTTGTGAAGCTTT+AGG | 0.291360 | 6:+4645876 | MsG0680030524.01.T01:CDS |
| TTCCGAGTCTCTGCAATTCC+TGG | 0.327710 | 6:-4644192 | None:intergenic |
| AGATTTCAGCGTACCGGTAT+TGG | 0.360138 | 6:+4645783 | MsG0680030524.01.T01:CDS |
| TTGTCGTAGAGCTGAAGTTT+TGG | 0.361135 | 6:+4644415 | MsG0680030524.01.T01:CDS |
| AATGTAGAATACCGCGTTGT+AGG | 0.362248 | 6:+4644213 | MsG0680030524.01.T01:CDS |
| GTGTCTATCATGTTATTCAA+TGG | 0.423944 | 6:+4645898 | MsG0680030524.01.T01:CDS |
| AAAGCTTCACAAATAGCAAC+TGG | 0.432607 | 6:-4645873 | None:intergenic |
| AAGTGCAAAATTCGAATGAA+TGG | 0.438598 | 6:+4644122 | MsG0680030524.01.T01:CDS |
| AGTGCAAAATTCGAATGAAT+GGG | 0.457982 | 6:+4644123 | MsG0680030524.01.T01:CDS |
| GAAAGCGACGGAGCAGTCAT+TGG | 0.464537 | 6:+4644437 | MsG0680030524.01.T01:CDS |
| TGACATCCACCGTGCGGGAA+TGG | 0.473452 | 6:-4645986 | None:intergenic |
| TTATACTAGCTACGCACTCC+AGG | 0.495911 | 6:+4644174 | MsG0680030524.01.T01:CDS |
| TCAGAGAGATTTCAGCGTAC+CGG | 0.517168 | 6:+4645777 | MsG0680030524.01.T01:intron |
| CTCCAGGAATTGCAGAGACT+CGG | 0.528433 | 6:+4644190 | MsG0680030524.01.T01:CDS |
| TTCTATGACATCCACCGTGC+GGG | 0.530948 | 6:-4645991 | None:intergenic |
| ACGAATACAAATTCCAATAC+CGG | 0.562322 | 6:-4645796 | None:intergenic |
| TTTAGCTAAAACAAATATGA+CGG | 0.596720 | 6:-4645826 | None:intergenic |
| GTGCAAAATTCGAATGAATG+GGG | 0.623329 | 6:+4644124 | MsG0680030524.01.T01:CDS |
| TGCTTTCCATTCCCGCACGG+TGG | 0.634709 | 6:+4645980 | MsG0680030524.01.T01:CDS |
| TGCAAAATTCGAATGAATGG+GGG | 0.645250 | 6:+4644125 | MsG0680030524.01.T01:CDS |
| AGATGCTTTCCATTCCCGCA+CGG | 0.679367 | 6:+4645977 | MsG0680030524.01.T01:CDS |
| ATTCTATGACATCCACCGTG+CGG | 0.701414 | 6:-4645992 | None:intergenic |
| ATTGTAACACACCTACAACG+CGG | 0.798908 | 6:-4644224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATTTATATAAACAAA+AGG | - | Chr6:4644621-4644640 | None:intergenic | 10.0% |
| !! | AAATTATGATCATAAAGAAA+TGG | - | Chr6:4645688-4645707 | None:intergenic | 15.0% |
| !!! | CTAAATTTTATCTATGATAA+TGG | + | Chr6:4645158-4645177 | MsG0680030524.01.T01:intron | 15.0% |
| !! | AAAAAATAGGAAACTATTAG+TGG | + | Chr6:4645550-4645569 | MsG0680030524.01.T01:intron | 20.0% |
| !! | AATATAAGAGTAATTGACAA+AGG | - | Chr6:4645052-4645071 | None:intergenic | 20.0% |
| !! | ATATAAGAGTAATTGACAAA+GGG | - | Chr6:4645051-4645070 | None:intergenic | 20.0% |
| !! | TTGTTGTGAATATATTTCAA+TGG | + | Chr6:4644710-4644729 | MsG0680030524.01.T01:intron | 20.0% |
| !! | TTTAGCTAAAACAAATATGA+CGG | - | Chr6:4645829-4645848 | None:intergenic | 20.0% |
| !!! | ATTGAATCTCTTATTTTAAG+AGG | - | Chr6:4644684-4644703 | None:intergenic | 20.0% |
| ! | AAAAAGACACTAAAAAGGAA+CGG | - | Chr6:4644961-4644980 | None:intergenic | 25.0% |
| ! | AAACACAAAGAACAAATCAA+TGG | + | Chr6:4644871-4644890 | MsG0680030524.01.T01:intron | 25.0% |
| ! | ACACAAGAATAATGAAACTA+TGG | - | Chr6:4644915-4644934 | None:intergenic | 25.0% |
| ! | GTAGAATATCAAAATTCTCT+AGG | - | Chr6:4644265-4644284 | None:intergenic | 25.0% |
| ! | TAATGTGTGTGCAAAAAAAT+AGG | + | Chr6:4645537-4645556 | MsG0680030524.01.T01:intron | 25.0% |
| ! | TACCAAAATGACAGTTAAAT+AGG | - | Chr6:4645001-4645020 | None:intergenic | 25.0% |
| ! | TTTGATTATGTGACATACAT+AGG | + | Chr6:4644635-4644654 | MsG0680030524.01.T01:intron | 25.0% |
| !! | ACCATATCTTTTTACAATGT+TGG | - | Chr6:4644154-4644173 | None:intergenic | 25.0% |
| !! | GATTAAAATGAGGGTATAAT+AGG | + | Chr6:4645572-4645591 | MsG0680030524.01.T01:intron | 25.0% |
| !!! | ACTATTAGTGGATTAAAATG+AGG | + | Chr6:4645562-4645581 | MsG0680030524.01.T01:intron | 25.0% |
| !!! | CTATTAGTGGATTAAAATGA+GGG | + | Chr6:4645563-4645582 | MsG0680030524.01.T01:intron | 25.0% |
| !!! | CTGTCATTTTGGTATTTTAA+AGG | + | Chr6:4645007-4645026 | MsG0680030524.01.T01:intron | 25.0% |
| !!! | TATAGAATTTTAACCCTTCA+TGG | - | Chr6:4645186-4645205 | None:intergenic | 25.0% |
| !!! | TCCTTTTTAGTGTCTTTTTA+GGG | + | Chr6:4644962-4644981 | MsG0680030524.01.T01:intron | 25.0% |
| !!! | TTCCTATTTAACTGTCATTT+TGG | + | Chr6:4644996-4645015 | MsG0680030524.01.T01:intron | 25.0% |
| !!! | TTCCTTTTTAGTGTCTTTTT+AGG | + | Chr6:4644961-4644980 | MsG0680030524.01.T01:intron | 25.0% |
| !!! | TTCTAAAACGACACTTAAAA+AGG | + | Chr6:4645637-4645656 | MsG0680030524.01.T01:intron | 25.0% |
| AAACGACACTTAAAAAGGAA+CGG | + | Chr6:4645642-4645661 | MsG0680030524.01.T01:intron | 30.0% | |
| AAGTGCAAAATTCGAATGAA+TGG | + | Chr6:4644122-4644141 | MsG0680030524.01.T01:CDS | 30.0% | |
| ACCCTAAAAAGACACTAAAA+AGG | - | Chr6:4644966-4644985 | None:intergenic | 30.0% | |
| ACGAATACAAATTCCAATAC+CGG | - | Chr6:4645799-4645818 | None:intergenic | 30.0% | |
| AGAAAGAGTTGAAGATTCAT+TGG | + | Chr6:4645302-4645321 | MsG0680030524.01.T01:intron | 30.0% | |
| AGTGCAAAATTCGAATGAAT+GGG | + | Chr6:4644123-4644142 | MsG0680030524.01.T01:CDS | 30.0% | |
| CGCAAAAAATAGGAATTTGT+TGG | + | Chr6:4645459-4645478 | MsG0680030524.01.T01:intron | 30.0% | |
| GATAGCATTTCATTCATGTT+TGG | + | Chr6:4644845-4644864 | MsG0680030524.01.T01:intron | 30.0% | |
| GCCAACATTGTAAAAAGATA+TGG | + | Chr6:4644150-4644169 | MsG0680030524.01.T01:CDS | 30.0% | |
| GTGTCTATCATGTTATTCAA+TGG | + | Chr6:4645898-4645917 | MsG0680030524.01.T01:CDS | 30.0% | |
| TGAATGAAATGCTATCAATG+TGG | - | Chr6:4644841-4644860 | None:intergenic | 30.0% | |
| TGAGACTTGAATTGAATAGT+TGG | - | Chr6:4644751-4644770 | None:intergenic | 30.0% | |
| TTATGTGACATACATAGGTT+AGG | + | Chr6:4644640-4644659 | MsG0680030524.01.T01:intron | 30.0% | |
| !! | GCTTTTGATTATTGTGAAGT+TGG | + | Chr6:4645346-4645365 | MsG0680030524.01.T01:intron | 30.0% |
| !! | TATGATAATGGTTCCATGAA+GGG | + | Chr6:4645170-4645189 | MsG0680030524.01.T01:intron | 30.0% |
| AAAGCTTCACAAATAGCAAC+TGG | - | Chr6:4645876-4645895 | None:intergenic | 35.0% | |
| AAGAGTTGAAGATTCATTGG+AGG | + | Chr6:4645305-4645324 | MsG0680030524.01.T01:intron | 35.0% | |
| AGATAAAGCGCGCAAAAAAT+AGG | + | Chr6:4645449-4645468 | MsG0680030524.01.T01:intron | 35.0% | |
| GAATTGAATAGTTGGAGCTT+AGG | - | Chr6:4644743-4644762 | None:intergenic | 35.0% | |
| GTGCAAAATTCGAATGAATG+GGG | + | Chr6:4644124-4644143 | MsG0680030524.01.T01:CDS | 35.0% | |
| TGCAAAATTCGAATGAATGG+GGG | + | Chr6:4644125-4644144 | MsG0680030524.01.T01:CDS | 35.0% | |
| ! | CATTCGAATTTTGCACTTAC+TGG | - | Chr6:4644120-4644139 | None:intergenic | 35.0% |
| ! | TTCTTCCTTTTGAGCATTCA+TGG | - | Chr6:4645286-4645305 | None:intergenic | 35.0% |
| !! | CTATGATAATGGTTCCATGA+AGG | + | Chr6:4645169-4645188 | MsG0680030524.01.T01:intron | 35.0% |
| !! | GTTGCTATTTGTGAAGCTTT+AGG | + | Chr6:4645876-4645895 | MsG0680030524.01.T01:CDS | 35.0% |
| AAGACACTAAAAAGGAACGG+AGG | - | Chr6:4644958-4644977 | None:intergenic | 40.0% | |
| AATGTAGAATACCGCGTTGT+AGG | + | Chr6:4644213-4644232 | MsG0680030524.01.T01:CDS | 40.0% | |
| AGACACTAAAAAGGAACGGA+GGG | - | Chr6:4644957-4644976 | None:intergenic | 40.0% | |
| AGACTCCATGAATGCTCAAA+AGG | + | Chr6:4645278-4645297 | MsG0680030524.01.T01:intron | 40.0% | |
| ATTGTAACACACCTACAACG+CGG | - | Chr6:4644227-4644246 | None:intergenic | 40.0% | |
| GACACTTAAAAAGGAACGGA+GGG | + | Chr6:4645646-4645665 | MsG0680030524.01.T01:intron | 40.0% | |
| ! | ACGCTGAAATCTCTCTGAAA+AGG | - | Chr6:4645775-4645794 | None:intergenic | 40.0% |
| ! | TTGTCGTAGAGCTGAAGTTT+TGG | + | Chr6:4644415-4644434 | MsG0680030524.01.T01:CDS | 40.0% |
| ATTCTATGACATCCACCGTG+CGG | - | Chr6:4645995-4646014 | None:intergenic | 45.0% | |
| CGACACTTAAAAAGGAACGG+AGG | + | Chr6:4645645-4645664 | MsG0680030524.01.T01:intron | 45.0% | |
| TCAGAGAGATTTCAGCGTAC+CGG | + | Chr6:4645777-4645796 | MsG0680030524.01.T01:intron | 45.0% | |
| TTATACTAGCTACGCACTCC+AGG | + | Chr6:4644174-4644193 | MsG0680030524.01.T01:CDS | 45.0% | |
| ! | AGATTTCAGCGTACCGGTAT+TGG | + | Chr6:4645783-4645802 | MsG0680030524.01.T01:CDS | 45.0% |
| !!! | GCTGAAGTTTTGGAAAGCGA+CGG | + | Chr6:4644425-4644444 | MsG0680030524.01.T01:CDS | 45.0% |
| AGATGCTTTCCATTCCCGCA+CGG | + | Chr6:4645977-4645996 | MsG0680030524.01.T01:CDS | 50.0% | |
| CTCCAGGAATTGCAGAGACT+CGG | + | Chr6:4644190-4644209 | MsG0680030524.01.T01:CDS | 50.0% | |
| TTCCGAGTCTCTGCAATTCC+TGG | - | Chr6:4644195-4644214 | None:intergenic | 50.0% | |
| TTCTATGACATCCACCGTGC+GGG | - | Chr6:4645994-4646013 | None:intergenic | 50.0% | |
| GAAAGCGACGGAGCAGTCAT+TGG | + | Chr6:4644437-4644456 | MsG0680030524.01.T01:CDS | 55.0% | |
| TGACATCCACCGTGCGGGAA+TGG | - | Chr6:4645989-4646008 | None:intergenic | 60.0% | |
| TGCTTTCCATTCCCGCACGG+TGG | + | Chr6:4645980-4645999 | MsG0680030524.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 4644032 | 4646019 | 4644032 | ID=MsG0680030524.01;Name=MsG0680030524.01 |
| Chr6 | mRNA | 4644032 | 4646019 | 4644032 | ID=MsG0680030524.01.T01;Parent=MsG0680030524.01;Name=MsG0680030524.01.T01;_AED=0.44;_eAED=0.45;_QI=0|0|0|0.66|0|0|3|0|176 |
| Chr6 | exon | 4644032 | 4644234 | 4644032 | ID=MsG0680030524.01.T01:exon:12391;Parent=MsG0680030524.01.T01 |
| Chr6 | exon | 4644370 | 4644458 | 4644370 | ID=MsG0680030524.01.T01:exon:12390;Parent=MsG0680030524.01.T01 |
| Chr6 | exon | 4645781 | 4646019 | 4645781 | ID=MsG0680030524.01.T01:exon:12389;Parent=MsG0680030524.01.T01 |
| Chr6 | CDS | 4644032 | 4644234 | 4644032 | ID=MsG0680030524.01.T01:cds;Parent=MsG0680030524.01.T01 |
| Chr6 | CDS | 4644370 | 4644458 | 4644370 | ID=MsG0680030524.01.T01:cds;Parent=MsG0680030524.01.T01 |
| Chr6 | CDS | 4645781 | 4646019 | 4645781 | ID=MsG0680030524.01.T01:cds;Parent=MsG0680030524.01.T01 |
| Gene Sequence |
| Protein sequence |
