Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037606.01.T01 | XP_039689544.1 | 47.368 | 266 | 129 | 5 | 150 | 413 | 16 | 272 | 1.43E-76 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037606.01.T01 | A0A396I0Y9 | 48.276 | 261 | 124 | 5 | 155 | 413 | 50 | 301 | 1.23e-75 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047925.01 | MsG0780037606.01 | 0.806882 | 6.629104e-50 | 3.639353e-47 |
| MsG0080048431.01 | MsG0780037606.01 | 0.802638 | 5.103135e-49 | 2.512459e-46 |
| MsG0180002233.01 | MsG0780037606.01 | 0.818121 | 2.311866e-52 | 1.715469e-49 |
| MsG0180002234.01 | MsG0780037606.01 | 0.823975 | 1.036765e-53 | 9.063558e-51 |
| MsG0180002518.01 | MsG0780037606.01 | 0.803772 | 2.972272e-49 | 1.506501e-46 |
| MsG0180002667.01 | MsG0780037606.01 | 0.818855 | 1.576625e-52 | 1.193892e-49 |
| MsG0180004275.01 | MsG0780037606.01 | 0.800277 | 1.554301e-48 | 7.207837e-46 |
| MsG0180004847.01 | MsG0780037606.01 | 0.826139 | 3.195703e-54 | 2.971594e-51 |
| MsG0280006325.01 | MsG0780037606.01 | 0.860406 | 2.112068e-63 | 5.766734e-60 |
| MsG0380013489.01 | MsG0780037606.01 | 0.820326 | 7.276455e-53 | 5.739383e-50 |
| MsG0380013883.01 | MsG0780037606.01 | 0.831154 | 1.960330e-55 | 2.109409e-52 |
| MsG0380013896.01 | MsG0780037606.01 | 0.806283 | 8.866544e-50 | 4.793599e-47 |
| MsG0680031101.01 | MsG0780037606.01 | 0.830541 | 2.770658e-55 | 2.927798e-52 |
| MsG0680031380.01 | MsG0780037606.01 | 0.829164 | 5.997781e-55 | 6.089791e-52 |
| MsG0680031989.01 | MsG0780037606.01 | 0.806270 | 8.925928e-50 | 4.824235e-47 |
| MsG0680032158.01 | MsG0780037606.01 | 0.803529 | 3.338414e-49 | 1.681633e-46 |
| MsG0680033466.01 | MsG0780037606.01 | 0.809378 | 1.949508e-50 | 1.142814e-47 |
| MsG0480018664.01 | MsG0780037606.01 | 0.966600 | 3.871173e-126 | 2.691077e-120 |
| MsG0480019482.01 | MsG0780037606.01 | 0.801833 | 7.470568e-49 | 3.603574e-46 |
| MsG0480021587.01 | MsG0780037606.01 | 0.848883 | 4.615325e-60 | 8.593573e-57 |
| MsG0380014977.01 | MsG0780037606.01 | 0.841041 | 6.042618e-58 | 8.769176e-55 |
| MsG0380016274.01 | MsG0780037606.01 | 0.852398 | 4.740236e-61 | 9.891776e-58 |
| MsG0380017312.01 | MsG0780037606.01 | 0.836131 | 1.120013e-56 | 1.398551e-53 |
| MsG0380017820.01 | MsG0780037606.01 | 0.809547 | 1.792851e-50 | 1.055704e-47 |
| MsG0380017821.01 | MsG0780037606.01 | 0.818125 | 2.307830e-52 | 1.712641e-49 |
| MsG0380017822.01 | MsG0780037606.01 | 0.802642 | 5.093423e-49 | 2.507917e-46 |
| MsG0380017855.01 | MsG0780037606.01 | 0.803337 | 3.657740e-49 | 1.833303e-46 |
| MsG0480018121.01 | MsG0780037606.01 | 0.800256 | 1.569830e-48 | 7.275868e-46 |
| MsG0580026197.01 | MsG0780037606.01 | 0.827953 | 1.176335e-54 | 1.152866e-51 |
| MsG0580026222.01 | MsG0780037606.01 | 0.843397 | 1.437394e-58 | 2.246262e-55 |
| MsG0580026303.01 | MsG0780037606.01 | 0.824354 | 8.448727e-54 | 7.465021e-51 |
| MsG0580026434.01 | MsG0780037606.01 | 0.826690 | 2.361638e-54 | 2.230741e-51 |
| MsG0580026631.01 | MsG0780037606.01 | 0.819527 | 1.108130e-52 | 8.549102e-50 |
| MsG0580027332.01 | MsG0780037606.01 | 0.852566 | 4.243694e-61 | 8.903573e-58 |
| MsG0580028169.01 | MsG0780037606.01 | 0.825010 | 5.917052e-54 | 5.328464e-51 |
| MsG0580028170.01 | MsG0780037606.01 | 0.827417 | 1.583046e-54 | 1.527437e-51 |
| MsG0580029292.01 | MsG0780037606.01 | 0.813770 | 2.163617e-51 | 1.425655e-48 |
| MsG0580029381.01 | MsG0780037606.01 | 0.867654 | 1.166879e-65 | 4.105049e-62 |
| MsG0580029899.01 | MsG0780037606.01 | 0.813597 | 2.361640e-51 | 1.548973e-48 |
| MsG0680030524.01 | MsG0780037606.01 | 0.807162 | 5.784798e-50 | 3.198927e-47 |
| MsG0280006551.01 | MsG0780037606.01 | 0.829089 | 6.257551e-55 | 6.338986e-52 |
| MsG0280008759.01 | MsG0780037606.01 | 0.829176 | 5.960959e-55 | 6.054421e-52 |
| MsG0280009248.01 | MsG0780037606.01 | 0.833835 | 4.245595e-56 | 4.948254e-53 |
| MsG0280009371.01 | MsG0780037606.01 | 0.825068 | 5.733888e-54 | 5.171789e-51 |
| MsG0280010117.01 | MsG0780037606.01 | 0.831838 | 1.330438e-55 | 1.461153e-52 |
| MsG0780036080.01 | MsG0780037606.01 | 0.804674 | 1.929041e-49 | 1.000685e-46 |
| MsG0780037606.01 | MsG0780039282.01 | 0.851000 | 1.179718e-60 | 2.354064e-57 |
| MsG0780037606.01 | MsG0780039880.01 | 0.825390 | 4.811511e-54 | 4.379508e-51 |
| MsG0780037606.01 | MsG0880043812.01 | 0.806650 | 7.420091e-50 | 4.048997e-47 |
| MsG0780037606.01 | MsG0880044644.01 | 0.815908 | 7.264374e-52 | 5.073079e-49 |
| MsG0780037606.01 | MsG0880044788.01 | 0.811372 | 7.235126e-51 | 4.470781e-48 |
| MsG0780037606.01 | MsG0880044821.01 | 0.814636 | 1.392719e-51 | 9.395289e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037606.01.T01 | MTR_4g007830 | 52.018 | 223 | 101 | 4 | 193 | 413 | 122 | 340 | 1.33e-70 | 227 |
| MsG0780037606.01.T01 | MTR_8g089760 | 51.875 | 160 | 72 | 3 | 256 | 413 | 1 | 157 | 8.02e-50 | 167 |
| MsG0780037606.01.T01 | MTR_1g009820 | 58.333 | 96 | 38 | 1 | 332 | 427 | 1 | 94 | 3.09e-34 | 124 |
| MsG0780037606.01.T01 | MTR_5g022270 | 32.171 | 258 | 164 | 8 | 155 | 408 | 137 | 387 | 4.84e-32 | 127 |
| MsG0780037606.01.T01 | MTR_2g022080 | 31.783 | 258 | 165 | 8 | 155 | 408 | 137 | 387 | 6.50e-32 | 126 |
| MsG0780037606.01.T01 | MTR_4g040020 | 32.934 | 167 | 106 | 4 | 245 | 408 | 11 | 174 | 5.97e-27 | 107 |
| MsG0780037606.01.T01 | MTR_6g035170 | 30.625 | 160 | 98 | 6 | 154 | 311 | 102 | 250 | 1.29e-13 | 71.6 |
| MsG0780037606.01.T01 | MTR_3g023970 | 24.151 | 265 | 176 | 11 | 160 | 414 | 276 | 525 | 2.55e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTGGCAGTTTACATATT+TGG | 0.149377 | 7:-29230184 | MsG0780037606.01.T01:CDS |
| GGGTTATCGAAAGCGATTTA+TGG | 0.217435 | 7:-29229611 | MsG0780037606.01.T01:CDS |
| AACCAATATTTAGGATAAAA+TGG | 0.269706 | 7:+29229781 | None:intergenic |
| GGTGGTTTCAAATCAACTTA+TGG | 0.292463 | 7:-29229214 | MsG0780037606.01.T01:CDS |
| ATTGTTTCAGGTAATTGATT+TGG | 0.299049 | 7:-29229842 | MsG0780037606.01.T01:intron |
| AATTGCTCATGTCGAAAGTT+TGG | 0.300899 | 7:-29230557 | MsG0780037606.01.T01:CDS |
| TAGGAATGATTGTGCGATTT+GGG | 0.304560 | 7:-29229022 | MsG0780037606.01.T01:CDS |
| TTTCATGGAAAACTTGTTGA+TGG | 0.314872 | 7:-29229254 | MsG0780037606.01.T01:CDS |
| ATCAAATGGATGATGGAAAA+AGG | 0.314997 | 7:-29228997 | MsG0780037606.01.T01:CDS |
| GTCGGAATAAACCAATATTT+AGG | 0.320561 | 7:+29229772 | None:intergenic |
| AAATCCTCATTTGTTTGATT+AGG | 0.320853 | 7:+29231221 | None:intergenic |
| CTTGATACTTGTCTTCCTCT+TGG | 0.328648 | 7:+29229374 | None:intergenic |
| CTACTAAAACATTACCTCAT+AGG | 0.337049 | 7:+29231172 | None:intergenic |
| TTAGGAATGATTGTGCGATT+TGG | 0.345924 | 7:-29229023 | MsG0780037606.01.T01:intron |
| GAAGACAAGTATCAAGAAAA+TGG | 0.346177 | 7:-29229367 | MsG0780037606.01.T01:intron |
| GGTTATCGAAAGCGATTTAT+GGG | 0.356200 | 7:-29229610 | MsG0780037606.01.T01:CDS |
| TGACATCGGCAGAAAGGAAT+TGG | 0.366356 | 7:-29229433 | MsG0780037606.01.T01:CDS |
| GTTAGCACAAAGGATGAAAA+TGG | 0.367000 | 7:-29230665 | MsG0780037606.01.T01:CDS |
| TTGATACTTGTCTTCCTCTT+GGG | 0.380492 | 7:+29229375 | None:intergenic |
| GGATTTGATCTTGCGGAATT+CGG | 0.384621 | 7:-29228798 | MsG0780037606.01.T01:CDS |
| AAATTCTGTAATAGTGTTAT+CGG | 0.391323 | 7:-29231368 | MsG0780037606.01.T01:CDS |
| ATCATCGTCAATAAATTTGT+TGG | 0.391722 | 7:+29229951 | None:intergenic |
| GTTTATTCCGACCACATTAT+CGG | 0.391757 | 7:-29229761 | MsG0780037606.01.T01:intron |
| ACAATCTGTAGATCAAATAA+AGG | 0.392762 | 7:-29230617 | MsG0780037606.01.T01:CDS |
| TGAGCAATTTGTGAGCGTTT+TGG | 0.431058 | 7:+29230571 | None:intergenic |
| TCATCGTCAATAAATTTGTT+GGG | 0.434932 | 7:+29229952 | None:intergenic |
| AAATGATGAAGAATCTAATC+TGG | 0.436512 | 7:-29230200 | MsG0780037606.01.T01:CDS |
| CGATACATGATACCGTTCAT+TGG | 0.450387 | 7:-29229470 | MsG0780037606.01.T01:CDS |
| TTAGCAACTCGTGTTGGCAT+TGG | 0.451963 | 7:-29229659 | MsG0780037606.01.T01:intron |
| TAGGGACACGAGCACCTCAT+TGG | 0.461676 | 7:+29231191 | None:intergenic |
| GTGCGATTTGGGTAATCAAA+TGG | 0.465432 | 7:-29229011 | MsG0780037606.01.T01:CDS |
| TTTGTTGATCCACGTGATTA+CGG | 0.472519 | 7:-29229169 | MsG0780037606.01.T01:CDS |
| TACTAAAACATTACCTCATA+GGG | 0.479347 | 7:+29231173 | None:intergenic |
| ACAGAGATAGATTACGTTGA+AGG | 0.486255 | 7:-29230003 | MsG0780037606.01.T01:CDS |
| ATGGATCCCTCTTTCTATGT+GGG | 0.495254 | 7:-29229235 | MsG0780037606.01.T01:CDS |
| GATGGATCCCTCTTTCTATG+TGG | 0.506410 | 7:-29229236 | MsG0780037606.01.T01:CDS |
| AGGAACTAGGAAGTTGCTGC+AGG | 0.508385 | 7:-29229983 | MsG0780037606.01.T01:CDS |
| CTGTAATAGTGTTATCGGAC+AGG | 0.508801 | 7:-29231363 | MsG0780037606.01.T01:intron |
| GCATCCTAATCAAACAAATG+AGG | 0.512763 | 7:-29231225 | MsG0780037606.01.T01:CDS |
| TTGGGTAATCAAATGGATGA+TGG | 0.515751 | 7:-29229004 | MsG0780037606.01.T01:CDS |
| CATAATTGACATCGGCAGAA+AGG | 0.522205 | 7:-29229439 | MsG0780037606.01.T01:CDS |
| GATCCCTCTTTCTATGTGGG+TGG | 0.525374 | 7:-29229232 | MsG0780037606.01.T01:CDS |
| TGAAGGCTCAAGACTACAAA+CGG | 0.525594 | 7:-29228858 | MsG0780037606.01.T01:CDS |
| GAAACCACCCACATAGAAAG+AGG | 0.536877 | 7:+29229228 | None:intergenic |
| TAGATTACGTTGAAGGAACT+AGG | 0.550308 | 7:-29229996 | MsG0780037606.01.T01:CDS |
| GAGTGCTGAGTTTATTTCAA+AGG | 0.557552 | 7:-29229584 | MsG0780037606.01.T01:intron |
| TTACACTAACAGGTGGATGA+AGG | 0.560129 | 7:-29228875 | MsG0780037606.01.T01:intron |
| CCACGTGATTACGGAAGTCA+AGG | 0.561322 | 7:-29229160 | MsG0780037606.01.T01:CDS |
| ATCGAAAGCGATTTATGGGG+GGG | 0.572674 | 7:-29229606 | MsG0780037606.01.T01:CDS |
| TGCCGATGTCAATTATGAGA+AGG | 0.572917 | 7:+29229445 | None:intergenic |
| CAATGAACGGTATCATGTAT+CGG | 0.573628 | 7:+29229471 | None:intergenic |
| TTAATAATTTACCGATAATG+TGG | 0.589365 | 7:+29229750 | None:intergenic |
| ATTTATTTAGCAACTCGTGT+TGG | 0.592550 | 7:-29229665 | MsG0780037606.01.T01:intron |
| TTATCGAAAGCGATTTATGG+GGG | 0.592691 | 7:-29229608 | MsG0780037606.01.T01:CDS |
| AAGGATGAAAATGGTAGAGA+CGG | 0.599188 | 7:-29230656 | MsG0780037606.01.T01:CDS |
| TAATTTACCGATAATGTGGT+CGG | 0.599623 | 7:+29229754 | None:intergenic |
| TCTTAATTGCTGTAGGCAAG+AGG | 0.599814 | 7:-29230037 | MsG0780037606.01.T01:intron |
| TGGTGGAGATGAAACGGAAT+CGG | 0.606779 | 7:+29231438 | None:intergenic |
| TATCGAAAGCGATTTATGGG+GGG | 0.620517 | 7:-29229607 | MsG0780037606.01.T01:CDS |
| AAAAGAGGGATTTGATCTTG+CGG | 0.622365 | 7:-29228805 | MsG0780037606.01.T01:CDS |
| TTCCTTCTCATAATTGACAT+CGG | 0.629925 | 7:-29229447 | MsG0780037606.01.T01:CDS |
| GAGGTGCTCGTGTCCCTATG+AGG | 0.630432 | 7:-29231186 | MsG0780037606.01.T01:intron |
| GGAACTAGGAAGTTGCTGCA+GGG | 0.630697 | 7:-29229982 | MsG0780037606.01.T01:CDS |
| GTTATCGAAAGCGATTTATG+GGG | 0.643499 | 7:-29229609 | MsG0780037606.01.T01:CDS |
| CCTTGACTTCCGTAATCACG+TGG | 0.644952 | 7:+29229160 | None:intergenic |
| TATGAGAAGGAACCAATGAA+CGG | 0.646603 | 7:+29229458 | None:intergenic |
| TTCATCATTTAACTTCAGTG+TGG | 0.647375 | 7:+29230213 | None:intergenic |
| GTTCGTCAGCTCTTCCCAAG+AGG | 0.652918 | 7:-29229389 | MsG0780037606.01.T01:CDS |
| AAACCACCCACATAGAAAGA+GGG | 0.662397 | 7:+29229229 | None:intergenic |
| CACGTGATTACGGAAGTCAA+GGG | 0.684657 | 7:-29229159 | MsG0780037606.01.T01:CDS |
| TATGAGAAAGAACATAGACA+TGG | 0.713561 | 7:-29230496 | MsG0780037606.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTCATAATTTTTTATTT+AGG | - | Chr7:29231230-29231249 | MsG0780037606.01.T01:CDS | 10.0% |
| !! | ATATATATATATATCATGTG+TGG | - | Chr7:29229221-29229240 | MsG0780037606.01.T01:CDS | 15.0% |
| !! | GAAAAAAAAACAAATATTCT+TGG | + | Chr7:29229451-29229470 | None:intergenic | 15.0% |
| !! | AAATTCTGTAATAGTGTTAT+CGG | - | Chr7:29228903-29228922 | MsG0780037606.01.T01:intron | 20.0% |
| !! | ATTTCTCTTTAAATTGTTTC+AGG | - | Chr7:29230417-29230436 | MsG0780037606.01.T01:intron | 20.0% |
| !! | CTACAATTATATGAAGAATA+TGG | + | Chr7:29229964-29229983 | None:intergenic | 20.0% |
| !! | TAATTAATCTTAATTGCTGT+AGG | - | Chr7:29230227-29230246 | MsG0780037606.01.T01:CDS | 20.0% |
| !! | TTAATAATTTACCGATAATG+TGG | + | Chr7:29230524-29230543 | None:intergenic | 20.0% |
| !!! | AACCAATATTTAGGATAAAA+TGG | + | Chr7:29230493-29230512 | None:intergenic | 20.0% |
| !!! | TTGTTATCATTTTGTTTTGA+TGG | + | Chr7:29228856-29228875 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTCTTCATTCAA+AGG | + | Chr7:29228886-29228905 | None:intergenic | 20.0% |
| !!! | TTTTTTATATCTTACGAGTT+TGG | + | Chr7:29231138-29231157 | None:intergenic | 20.0% |
| ! | AAATCCTCATTTGTTTGATT+AGG | + | Chr7:29229053-29229072 | None:intergenic | 25.0% |
| ! | AAATGATGAAGAATCTAATC+TGG | - | Chr7:29230071-29230090 | MsG0780037606.01.T01:intron | 25.0% |
| ! | AAGAATATGGTTAATACCTT+TGG | + | Chr7:29229951-29229970 | None:intergenic | 25.0% |
| ! | ACAATCTGTAGATCAAATAA+AGG | - | Chr7:29229654-29229673 | MsG0780037606.01.T01:CDS | 25.0% |
| ! | ACCAACAGAAAAAATGATAA+AGG | - | Chr7:29230639-29230658 | MsG0780037606.01.T01:CDS | 25.0% |
| ! | ATCATCGTCAATAAATTTGT+TGG | + | Chr7:29230323-29230342 | None:intergenic | 25.0% |
| ! | CATAGCTATGTAGATAAAAA+GGG | + | Chr7:29230746-29230765 | None:intergenic | 25.0% |
| ! | CCAACAGAAAAAATGATAAA+GGG | - | Chr7:29230640-29230659 | MsG0780037606.01.T01:CDS | 25.0% |
| ! | TAAACAAAAATTCCAACAGA+GGG | + | Chr7:29229478-29229497 | None:intergenic | 25.0% |
| ! | TACAAATTAGATACCTCAAA+AGG | - | Chr7:29229888-29229907 | MsG0780037606.01.T01:intron | 25.0% |
| ! | TACTAAAACATTACCTCATA+GGG | + | Chr7:29229101-29229120 | None:intergenic | 25.0% |
| ! | TCATAGCTATGTAGATAAAA+AGG | + | Chr7:29230747-29230766 | None:intergenic | 25.0% |
| ! | TTAAACAAAAATTCCAACAG+AGG | + | Chr7:29229479-29229498 | None:intergenic | 25.0% |
| ! | TTATATGTTTGTTTATGCAG+TGG | - | Chr7:29230010-29230029 | MsG0780037606.01.T01:CDS | 25.0% |
| !! | AAATCCCTCTTTTTATTGTA+AGG | + | Chr7:29231459-29231478 | None:intergenic | 25.0% |
| !! | ATTGTTTCAGGTAATTGATT+TGG | - | Chr7:29230429-29230448 | MsG0780037606.01.T01:intron | 25.0% |
| !! | CACCATTTTATCCTAAATAT+TGG | - | Chr7:29230488-29230507 | MsG0780037606.01.T01:CDS | 25.0% |
| !! | GTATCTAATTTGTAACCTAA+AGG | + | Chr7:29229882-29229901 | None:intergenic | 25.0% |
| !! | TCATCGTCAATAAATTTGTT+GGG | + | Chr7:29230322-29230341 | None:intergenic | 25.0% |
| !!! | ACATTTTTAGTCTCTTTTCA+TGG | - | Chr7:29231002-29231021 | MsG0780037606.01.T01:intron | 25.0% |
| !!! | ATTTTAATGTATGCTCATTG+TGG | - | Chr7:29230573-29230592 | MsG0780037606.01.T01:CDS | 25.0% |
| !!! | CAGCTTTTTGATTATATTGA+TGG | + | Chr7:29230113-29230132 | None:intergenic | 25.0% |
| !!! | TTATCATTTTGTTTTGATGG+TGG | + | Chr7:29228853-29228872 | None:intergenic | 25.0% |
| AATCTGGCAGTTTACATATT+TGG | - | Chr7:29230087-29230106 | MsG0780037606.01.T01:intron | 30.0% | |
| AATTGGAGCTAATATTCCAA+AGG | - | Chr7:29229932-29229951 | MsG0780037606.01.T01:intron | 30.0% | |
| ATTGTAACCAAAACACCTTT+AGG | - | Chr7:29229864-29229883 | MsG0780037606.01.T01:intron | 30.0% | |
| ATTTATTTAGCAACTCGTGT+TGG | - | Chr7:29230606-29230625 | MsG0780037606.01.T01:CDS | 30.0% | |
| CATGTACACATTAGTGATAA+TGG | - | Chr7:29229368-29229387 | MsG0780037606.01.T01:CDS | 30.0% | |
| CTACTAAAACATTACCTCAT+AGG | + | Chr7:29229102-29229121 | None:intergenic | 30.0% | |
| GAAGACAAGTATCAAGAAAA+TGG | - | Chr7:29230904-29230923 | MsG0780037606.01.T01:intron | 30.0% | |
| GATCTGTTAGCACAATTTAA+TGG | - | Chr7:29229258-29229277 | MsG0780037606.01.T01:CDS | 30.0% | |
| GCATCCTTACAATAAAAAGA+GGG | - | Chr7:29231452-29231471 | MsG0780037606.01.T01:CDS | 30.0% | |
| GTCGGAATAAACCAATATTT+AGG | + | Chr7:29230502-29230521 | None:intergenic | 30.0% | |
| TAATTTACCGATAATGTGGT+CGG | + | Chr7:29230520-29230539 | None:intergenic | 30.0% | |
| TATGAGAAAGAACATAGACA+TGG | - | Chr7:29229775-29229794 | MsG0780037606.01.T01:CDS | 30.0% | |
| TGCATCCTTACAATAAAAAG+AGG | - | Chr7:29231451-29231470 | MsG0780037606.01.T01:CDS | 30.0% | |
| TTCCTTCTCATAATTGACAT+CGG | - | Chr7:29230824-29230843 | MsG0780037606.01.T01:intron | 30.0% | |
| TTTACCACAATTACACTAAC+AGG | - | Chr7:29231386-29231405 | MsG0780037606.01.T01:CDS | 30.0% | |
| ! | AGGATTTTGAATTTCCAATG+AGG | - | Chr7:29229066-29229085 | MsG0780037606.01.T01:intron | 30.0% |
| ! | TTCATCATTTAACTTCAGTG+TGG | + | Chr7:29230061-29230080 | None:intergenic | 30.0% |
| !! | AATTTAATGGTGGATTTGGT+AGG | - | Chr7:29229271-29229290 | MsG0780037606.01.T01:intron | 30.0% |
| !! | ATCAAATGGATGATGGAAAA+AGG | - | Chr7:29231274-29231293 | MsG0780037606.01.T01:intron | 30.0% |
| !! | TTTAACTTCAGTGTGGTTTT+AGG | + | Chr7:29230054-29230073 | None:intergenic | 30.0% |
| !! | TTTCATGGAAAACTTGTTGA+TGG | - | Chr7:29231017-29231036 | MsG0780037606.01.T01:intron | 30.0% |
| !!! | AATTTTGCGAAAGTTTGCTA+AGG | - | Chr7:29229741-29229760 | MsG0780037606.01.T01:intron | 30.0% |
| !!! | CACACTTCTTATTTTTACAG+AGG | - | Chr7:29229584-29229603 | MsG0780037606.01.T01:intron | 30.0% |
| !!! | CCCTTTATCATTTTTTCTGT+TGG | + | Chr7:29230643-29230662 | None:intergenic | 30.0% |
| !!! | CTATGAGGTAATGTTTTAGT+AGG | - | Chr7:29229100-29229119 | MsG0780037606.01.T01:intron | 30.0% |
| !!! | GGTGTTTTGGTTACAATAAT+CGG | + | Chr7:29229861-29229880 | None:intergenic | 30.0% |
| !!! | TTTGTAACCTAAAGGTGTTT+TGG | + | Chr7:29229874-29229893 | None:intergenic | 30.0% |
| !!! | TTTTTTTCTTTTCCCTCTGT+TGG | - | Chr7:29229463-29229482 | MsG0780037606.01.T01:CDS | 30.0% |
| AAAAGAGGGATTTGATCTTG+CGG | - | Chr7:29231466-29231485 | MsG0780037606.01.T01:CDS | 35.0% | |
| AAGGATGAAAATGGTAGAGA+CGG | - | Chr7:29229615-29229634 | MsG0780037606.01.T01:CDS | 35.0% | |
| AATTGCTCATGTCGAAAGTT+TGG | - | Chr7:29229714-29229733 | MsG0780037606.01.T01:intron | 35.0% | |
| ACAGAGATAGATTACGTTGA+AGG | - | Chr7:29230268-29230287 | MsG0780037606.01.T01:intron | 35.0% | |
| AGGAAACTCTTCTCAACTAA+AGG | - | Chr7:29229825-29229844 | MsG0780037606.01.T01:CDS | 35.0% | |
| ATTAGATACCTCAAAAGGCA+AGG | - | Chr7:29229893-29229912 | MsG0780037606.01.T01:intron | 35.0% | |
| CAATGAACGGTATCATGTAT+CGG | + | Chr7:29230803-29230822 | None:intergenic | 35.0% | |
| CTGTTAGCACAATTTAATGG+TGG | - | Chr7:29229261-29229280 | MsG0780037606.01.T01:CDS | 35.0% | |
| GAATCTCGCTCGAAATTAAT+TGG | - | Chr7:29229915-29229934 | MsG0780037606.01.T01:intron | 35.0% | |
| GCATCCTAATCAAACAAATG+AGG | - | Chr7:29229046-29229065 | MsG0780037606.01.T01:intron | 35.0% | |
| GGTGGTTTCAAATCAACTTA+TGG | - | Chr7:29231057-29231076 | MsG0780037606.01.T01:intron | 35.0% | |
| GGTTATCGAAAGCGATTTAT+GGG | - | Chr7:29230661-29230680 | MsG0780037606.01.T01:CDS | 35.0% | |
| GTTAGCACAAAGGATGAAAA+TGG | - | Chr7:29229606-29229625 | MsG0780037606.01.T01:CDS | 35.0% | |
| GTTATCGAAAGCGATTTATG+GGG | - | Chr7:29230662-29230681 | MsG0780037606.01.T01:CDS | 35.0% | |
| GTTTATTCCGACCACATTAT+CGG | - | Chr7:29230510-29230529 | MsG0780037606.01.T01:CDS | 35.0% | |
| TAGATTACGTTGAAGGAACT+AGG | - | Chr7:29230275-29230294 | MsG0780037606.01.T01:intron | 35.0% | |
| TAGGAATGATTGTGCGATTT+GGG | - | Chr7:29231249-29231268 | MsG0780037606.01.T01:CDS | 35.0% | |
| TATGAGAAGGAACCAATGAA+CGG | + | Chr7:29230816-29230835 | None:intergenic | 35.0% | |
| TCTGCACAAAATCAAGTGTT+AGG | - | Chr7:29229805-29229824 | MsG0780037606.01.T01:CDS | 35.0% | |
| TTAGGAATGATTGTGCGATT+TGG | - | Chr7:29231248-29231267 | MsG0780037606.01.T01:CDS | 35.0% | |
| TTATCGAAAGCGATTTATGG+GGG | - | Chr7:29230663-29230682 | MsG0780037606.01.T01:CDS | 35.0% | |
| TTGATACTTGTCTTCCTCTT+GGG | + | Chr7:29230899-29230918 | None:intergenic | 35.0% | |
| TTGGGTAATCAAATGGATGA+TGG | - | Chr7:29231267-29231286 | MsG0780037606.01.T01:CDS | 35.0% | |
| TTTGGTTACAATAATCGGAG+TGG | + | Chr7:29229856-29229875 | None:intergenic | 35.0% | |
| TTTGTTGATCCACGTGATTA+CGG | - | Chr7:29231102-29231121 | MsG0780037606.01.T01:intron | 35.0% | |
| ! | ATCATGTGTGGATTGCTTAA+TGG | - | Chr7:29229233-29229252 | MsG0780037606.01.T01:CDS | 35.0% |
| ! | TTTTACAGAGGTTAGCACAA+AGG | - | Chr7:29229596-29229615 | MsG0780037606.01.T01:CDS | 35.0% |
| !! | GAGTGCTGAGTTTATTTCAA+AGG | - | Chr7:29230687-29230706 | MsG0780037606.01.T01:intron | 35.0% |
| !! | GCACAATTTAATGGTGGATT+TGG | - | Chr7:29229267-29229286 | MsG0780037606.01.T01:intron | 35.0% |
| !!! | GCTTATGTCATTTTTGTGTG+TGG | - | Chr7:29228974-29228993 | MsG0780037606.01.T01:intron | 35.0% |
| !!! | TATGTCATTTTTGTGTGTGG+TGG | - | Chr7:29228977-29228996 | MsG0780037606.01.T01:CDS | 35.0% |
| !!! | TTTTGATGGTGGAGATGAAA+CGG | + | Chr7:29228842-29228861 | None:intergenic | 35.0% |
| AAACCACCCACATAGAAAGA+GGG | + | Chr7:29231045-29231064 | None:intergenic | 40.0% | |
| ACCACAATTACACTAACAGG+TGG | - | Chr7:29231389-29231408 | MsG0780037606.01.T01:CDS | 40.0% | |
| ATGGATCCCTCTTTCTATGT+GGG | - | Chr7:29231036-29231055 | MsG0780037606.01.T01:intron | 40.0% | |
| CATAATTGACATCGGCAGAA+AGG | - | Chr7:29230832-29230851 | MsG0780037606.01.T01:intron | 40.0% | |
| CGATACATGATACCGTTCAT+TGG | - | Chr7:29230801-29230820 | MsG0780037606.01.T01:intron | 40.0% | |
| CTGTAATAGTGTTATCGGAC+AGG | - | Chr7:29228908-29228927 | MsG0780037606.01.T01:intron | 40.0% | |
| CTTGATACTTGTCTTCCTCT+TGG | + | Chr7:29230900-29230919 | None:intergenic | 40.0% | |
| GGATTTGATCTTGCGGAATT+CGG | - | Chr7:29231473-29231492 | MsG0780037606.01.T01:CDS | 40.0% | |
| GGGTTATCGAAAGCGATTTA+TGG | - | Chr7:29230660-29230679 | MsG0780037606.01.T01:CDS | 40.0% | |
| TATCGAAAGCGATTTATGGG+GGG | - | Chr7:29230664-29230683 | MsG0780037606.01.T01:CDS | 40.0% | |
| TCCACCTGTTAGTGTAATTG+TGG | + | Chr7:29231393-29231412 | None:intergenic | 40.0% | |
| TCTTAATTGCTGTAGGCAAG+AGG | - | Chr7:29230234-29230253 | MsG0780037606.01.T01:CDS | 40.0% | |
| TGAAGGCTCAAGACTACAAA+CGG | - | Chr7:29231413-29231432 | MsG0780037606.01.T01:CDS | 40.0% | |
| TGCCGATGTCAATTATGAGA+AGG | + | Chr7:29230829-29230848 | None:intergenic | 40.0% | |
| TTACACTAACAGGTGGATGA+AGG | - | Chr7:29231396-29231415 | MsG0780037606.01.T01:CDS | 40.0% | |
| ! | GTGCGATTTGGGTAATCAAA+TGG | - | Chr7:29231260-29231279 | MsG0780037606.01.T01:CDS | 40.0% |
| ! | GTGGATTTGGTAGGAACTAA+TGG | - | Chr7:29229280-29229299 | MsG0780037606.01.T01:intron | 40.0% |
| ! | TGAGCAATTTGTGAGCGTTT+TGG | + | Chr7:29229703-29229722 | None:intergenic | 40.0% |
| !! | GTTGACTTTTGATGAGAGTC+TGG | - | Chr7:29230462-29230481 | MsG0780037606.01.T01:intron | 40.0% |
| ATCGAAAGCGATTTATGGGG+GGG | - | Chr7:29230665-29230684 | MsG0780037606.01.T01:CDS | 45.0% | |
| CACGTGATTACGGAAGTCAA+GGG | - | Chr7:29231112-29231131 | MsG0780037606.01.T01:intron | 45.0% | |
| GAAACCACCCACATAGAAAG+AGG | + | Chr7:29231046-29231065 | None:intergenic | 45.0% | |
| GATGGATCCCTCTTTCTATG+TGG | - | Chr7:29231035-29231054 | MsG0780037606.01.T01:intron | 45.0% | |
| TGACATCGGCAGAAAGGAAT+TGG | - | Chr7:29230838-29230857 | MsG0780037606.01.T01:intron | 45.0% | |
| TGGTGGAGATGAAACGGAAT+CGG | + | Chr7:29228836-29228855 | None:intergenic | 45.0% | |
| ! | TTAGCAACTCGTGTTGGCAT+TGG | - | Chr7:29230612-29230631 | MsG0780037606.01.T01:CDS | 45.0% |
| !!! | TAAATATTATCTTATTTTAT+AGG | - | Chr7:29230187-29230206 | MsG0780037606.01.T01:CDS | 5.0% |
| AGGAACTAGGAAGTTGCTGC+AGG | - | Chr7:29230288-29230307 | MsG0780037606.01.T01:intron | 50.0% | |
| CCACGTGATTACGGAAGTCA+AGG | - | Chr7:29231111-29231130 | MsG0780037606.01.T01:intron | 50.0% | |
| CCTTGACTTCCGTAATCACG+TGG | + | Chr7:29231114-29231133 | None:intergenic | 50.0% | |
| GATCCCTCTTTCTATGTGGG+TGG | - | Chr7:29231039-29231058 | MsG0780037606.01.T01:intron | 50.0% | |
| GGAACTAGGAAGTTGCTGCA+GGG | - | Chr7:29230289-29230308 | MsG0780037606.01.T01:intron | 50.0% | |
| ! | GCGAGATTCCTTGCCTTTTG+AGG | + | Chr7:29229904-29229923 | None:intergenic | 50.0% |
| GTTCGTCAGCTCTTCCCAAG+AGG | - | Chr7:29230882-29230901 | MsG0780037606.01.T01:intron | 55.0% | |
| TAGGGACACGAGCACCTCAT+TGG | + | Chr7:29229083-29229102 | None:intergenic | 55.0% | |
| ! | GAGGTGCTCGTGTCCCTATG+AGG | - | Chr7:29229085-29229104 | MsG0780037606.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 29228784 | 29231509 | 29228784 | ID=MsG0780037606.01;Name=MsG0780037606.01 |
| Chr7 | mRNA | 29228784 | 29231509 | 29228784 | ID=MsG0780037606.01.T01;Parent=MsG0780037606.01;Name=MsG0780037606.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.36|1|1|11|0|427 |
| Chr7 | exon | 29231364 | 29231509 | 29231364 | ID=MsG0780037606.01.T01:exon:4353;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29231187 | 29231286 | 29231187 | ID=MsG0780037606.01.T01:exon:4352;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29230474 | 29230689 | 29230474 | ID=MsG0780037606.01.T01:exon:4351;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29230157 | 29230263 | 29230157 | ID=MsG0780037606.01.T01:exon:4350;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29229951 | 29230044 | 29229951 | ID=MsG0780037606.01.T01:exon:4349;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29229762 | 29229854 | 29229762 | ID=MsG0780037606.01.T01:exon:4348;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29229585 | 29229677 | 29229585 | ID=MsG0780037606.01.T01:exon:4347;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29229368 | 29229502 | 29229368 | ID=MsG0780037606.01.T01:exon:4346;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29229151 | 29229281 | 29229151 | ID=MsG0780037606.01.T01:exon:4345;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29228975 | 29229041 | 29228975 | ID=MsG0780037606.01.T01:exon:4344;Parent=MsG0780037606.01.T01 |
| Chr7 | exon | 29228784 | 29228885 | 29228784 | ID=MsG0780037606.01.T01:exon:4343;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29231364 | 29231509 | 29231364 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29231187 | 29231286 | 29231187 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29230474 | 29230689 | 29230474 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29230157 | 29230263 | 29230157 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29229951 | 29230044 | 29229951 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29229762 | 29229854 | 29229762 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29229585 | 29229677 | 29229585 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29229368 | 29229502 | 29229368 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29229151 | 29229281 | 29229151 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29228975 | 29229041 | 29228975 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Chr7 | CDS | 29228784 | 29228885 | 29228784 | ID=MsG0780037606.01.T01:cds;Parent=MsG0780037606.01.T01 |
| Gene Sequence |
| Protein sequence |
