AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002234.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002234.01.T01 MTR_3g018740 82.073 357 61 1 44 397 32 388 0.0 577
MsG0180002234.01.T01 MTR_3g101010 71.709 357 95 2 44 395 32 387 1.96e-169 479
MsG0180002234.01.T01 MTR_8g027395 69.209 354 105 3 44 395 44 395 6.81e-168 476
MsG0180002234.01.T01 MTR_4g045707 66.761 355 114 2 44 395 33 386 7.60e-164 465
MsG0180002234.01.T01 MTR_2g045980 67.590 361 106 5 44 397 32 388 1.02e-163 464
MsG0180002234.01.T01 MTR_2g046030 65.928 361 112 4 44 397 32 388 5.64e-161 457
MsG0180002234.01.T01 MTR_3g101030 65.054 372 106 4 45 395 59 427 7.35e-161 459
MsG0180002234.01.T01 MTR_8g027420 66.667 354 103 4 44 395 33 373 2.65e-158 450
MsG0180002234.01.T01 MTR_4g088525 65.439 353 120 2 44 395 16 367 4.61e-158 449
MsG0180002234.01.T01 MTR_7g451890 63.611 360 123 2 44 396 43 401 7.67e-158 450
MsG0180002234.01.T01 MTR_3g101180 64.481 366 114 5 44 395 35 398 2.33e-157 449
MsG0180002234.01.T01 MTR_8g461160 65.097 361 118 3 44 397 35 394 3.45e-156 446
MsG0180002234.01.T01 MTR_7g047780 64.444 360 120 3 44 396 43 401 6.96e-156 445
MsG0180002234.01.T01 MTR_3g048000 63.662 355 108 4 44 395 54 390 7.98e-154 440
MsG0180002234.01.T01 MTR_7g050810 62.222 360 128 2 44 396 45 403 8.61e-154 440
MsG0180002234.01.T01 MTR_3g101130 63.025 357 121 3 45 395 36 387 5.75e-152 435
MsG0180002234.01.T01 MTR_7g050750 61.944 360 129 3 44 396 37 395 2.98e-150 431
MsG0180002234.01.T01 MTR_4g088535 65.812 351 100 5 44 392 34 366 1.13e-149 429
MsG0180002234.01.T01 MTR_3g101050 64.326 356 104 5 45 395 59 396 1.40e-138 401
MsG0180002234.01.T01 MTR_3g015620 59.669 362 112 4 44 396 43 379 2.13e-134 390
MsG0180002234.01.T01 MTR_3g102920 57.821 358 109 5 44 395 87 408 4.73e-126 370
MsG0180002234.01.T01 MTR_3g018747 73.180 261 52 2 141 397 9 255 5.00e-125 361
MsG0180002234.01.T01 MTR_3g101190 56.215 354 92 5 44 395 18 310 8.91e-122 355
MsG0180002234.01.T01 MTR_3g101200 54.444 360 129 5 44 395 58 390 1.91e-115 342
MsG0180002234.01.T01 MTR_3g100995 66.016 256 80 2 145 396 11 263 1.60e-113 332
MsG0180002234.01.T01 MTR_3g100010 55.844 308 88 2 44 318 44 336 1.99e-105 315
MsG0180002234.01.T01 MTR_7g050830 55.245 286 97 2 44 309 45 319 4.44e-101 303
MsG0180002234.01.T01 MTR_3g015760 60.289 277 100 3 126 396 8 280 4.84e-101 301
MsG0180002234.01.T01 MTR_3g111160 69.524 210 61 1 189 395 9 218 1.29e-93 280
MsG0180002234.01.T01 MTR_3g100520 62.963 216 69 3 182 395 1 207 1.22e-85 259
MsG0180002234.01.T01 MTR_3g101110 55.985 259 78 4 121 371 50 280 4.33e-84 258
MsG0180002234.01.T01 MTR_3g114310 43.169 366 192 10 44 394 43 407 6.73e-83 259
MsG0180002234.01.T01 MTR_2g046410 63.507 211 69 3 194 397 140 349 8.37e-82 254
MsG0180002234.01.T01 MTR_3g099970 61.421 197 58 3 141 337 20 198 1.30e-73 228
MsG0180002234.01.T01 MTR_3g102870 60.976 164 54 2 204 358 1 163 2.15e-59 191
MsG0180002234.01.T01 MTR_3g101150 63.291 158 48 2 247 395 1 157 1.42e-58 188
MsG0180002234.01.T01 MTR_3g101020 54.839 186 53 2 215 396 1 159 7.93e-56 181
MsG0180002234.01.T01 MTR_3g111150 62.914 151 32 1 44 194 26 152 2.01e-55 180
MsG0180002234.01.T01 MTR_3g100990 69.388 98 30 0 44 141 32 129 6.66e-36 137
MsG0180002234.01.T01 MTR_6g046890 53.333 90 37 1 19 103 1 90 1.26e-18 82.0
MsG0180002234.01.T01 MTR_4g093550 61.765 68 26 0 33 100 22 89 1.56e-18 80.5
MsG0180002234.01.T01 MTR_3g101140 59.459 74 23 2 328 395 42 114 3.16e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002234.01.T01 AT1G47710 53.911 358 159 2 44 395 33 390 2.95e-133 387
MsG0180002234.01.T01 AT1G47710 53.911 358 159 2 44 395 60 417 9.33e-133 387
MsG0180002234.01.T01 AT3G45220 50.000 360 169 4 44 394 33 390 7.00e-119 351
MsG0180002234.01.T01 AT2G25240 50.693 361 157 6 44 394 33 382 2.42e-112 334
MsG0180002234.01.T01 AT2G26390 48.062 387 174 7 25 394 10 386 2.66e-112 334
MsG0180002234.01.T01 AT2G35580 44.875 361 166 8 45 394 33 371 7.16e-91 279
MsG0180002234.01.T01 AT2G14540 43.333 360 172 6 44 394 61 397 1.05e-89 277
MsG0180002234.01.T01 AT1G64030 43.490 361 172 5 44 394 33 371 1.11e-89 276
MsG0180002234.01.T01 AT1G62170 42.105 361 176 4 44 394 94 431 2.88e-89 276
MsG0180002234.01.T01 AT1G62170 38.579 394 176 5 44 394 94 464 3.69e-82 259
MsG0180002234.01.T01 AT1G64010 43.779 217 96 4 182 394 1 195 1.12e-52 174
MsG0180002234.01.T01 AT1G64010 43.564 202 88 4 197 394 2 181 8.63e-47 159
MsG0180002234.01.T01 AT1G62160 38.636 176 87 5 221 394 62 218 4.88e-30 115
MsG0180002234.01.T01 AT1G63280 48.305 118 57 2 138 253 5 120 1.43e-26 103
MsG0180002234.01.T01 AT1G51330 48.624 109 53 1 142 247 32 140 3.31e-23 96.7

Find 72 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCACTCTACTTTAA+AGG 0.141946 1:+35198189 MsG0180002234.01.T01:CDS
TGATTAAAGAAGTGAATTTA+TGG 0.223064 1:+35198088 MsG0180002234.01.T01:CDS
GAGGAAGAAGTTCTTTAATA+AGG 0.287252 1:-35198131 None:intergenic
GGACAAAGTAGATTTATAAT+TGG 0.309459 1:-35197633 None:intergenic
GTTGAGATCATCGGTGGATT+TGG 0.331266 1:-35197474 None:intergenic
GACAGTCCATCTTTAGCATT+TGG 0.341529 1:-35198408 None:intergenic
ACTGGAACCATTCTCTTTGT+TGG 0.353661 1:+35198798 MsG0180002234.01.T01:CDS
CTCTCAGACGCCGCTTTCAC+TGG 0.370831 1:+35197527 MsG0180002234.01.T01:CDS
TGAAGGAAGGTTGAAGAGAA+AGG 0.378765 1:-35197595 None:intergenic
CTTCGTCTTCTTTATAAGAA+AGG 0.383719 1:+35198348 MsG0180002234.01.T01:CDS
GATTAAAGAAGTGAATTTAT+GGG 0.386003 1:+35198089 MsG0180002234.01.T01:CDS
TCTCATATGTTGAAGGAGTT+AGG 0.397032 1:+35198552 MsG0180002234.01.T01:CDS
TTTCTTCCAAATGCTAAAGA+TGG 0.400337 1:+35198402 MsG0180002234.01.T01:CDS
GTCAGCATTGGTTGAGAAGT+TGG 0.411230 1:+35198428 MsG0180002234.01.T01:CDS
TGAAACTTCTCATATGTTGA+AGG 0.426857 1:+35198545 MsG0180002234.01.T01:CDS
GGAATCAGACGTTTGATGTA+TGG 0.438429 1:+35198217 MsG0180002234.01.T01:CDS
GTTAAGCTACCAACTGATCT+TGG 0.446246 1:-35198153 None:intergenic
GAAGGAAGGTTGAAGAGAAA+GGG 0.450222 1:-35197594 None:intergenic
TTCATTGAAGTAAATGAAGA+AGG 0.457204 1:+35198672 MsG0180002234.01.T01:CDS
CTCTGTTGATTTCATGACCA+AGG 0.457766 1:+35197655 MsG0180002234.01.T01:CDS
CGATGATGCTTAGCACAACT+TGG 0.463699 1:-35197400 None:intergenic
GAAGCTGCTGCAGCTAGTGC+TGG 0.463886 1:+35198699 MsG0180002234.01.T01:CDS
GCAAGGTCCGGGGTTCGAAC+CGG 0.468894 1:-35197356 None:intergenic
GTGGTGGCCGGTTCGAACCC+CGG 0.468895 1:+35197349 MsG0180002234.01.T01:CDS
TGACTGAGCTTCCATTCAAA+AGG 0.469619 1:-35198263 None:intergenic
CAGACGCCGCTTTCACTGGC+GGG 0.477109 1:+35197531 MsG0180002234.01.T01:CDS
TCTCTAATCAGAAATAAGAA+AGG 0.483189 1:-35198768 None:intergenic
AGATTATAGTGTAGTAAGTC+AGG 0.483657 1:-35198459 None:intergenic
CATCCCCTCGGTGGTCATGA+AGG 0.485289 1:-35198292 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 1:+35197407 MsG0180002234.01.T01:CDS
CTGATTAGAGAAGATTCGAC+TGG 0.501644 1:+35198780 MsG0180002234.01.T01:CDS
CACTCTACTTTAAAGGAGCA+TGG 0.505591 1:+35198196 MsG0180002234.01.T01:CDS
CTTCTTCCTCCAAGATCAGT+TGG 0.507731 1:+35198144 MsG0180002234.01.T01:CDS
TCATCTACTTCTACTTCAGC+AGG 0.509971 1:-35198486 None:intergenic
ATCATCGCTGCTGGCTCTGA+GGG 0.511801 1:+35197416 MsG0180002234.01.T01:CDS
TAAATAATGAGCAGATTGGT+TGG 0.513683 1:+35197247 MsG0180002234.01.T01:intron
CTCTAATCAGAAATAAGAAA+GGG 0.516757 1:-35198767 None:intergenic
CATCATCGCTGCTGGCTCTG+AGG 0.516897 1:+35197415 MsG0180002234.01.T01:CDS
GTCAAACCTCCCGGAGTGAA+AGG 0.526936 1:-35198585 None:intergenic
CACTTGTCCAACAAAGAGAA+TGG 0.528533 1:-35198805 None:intergenic
ATCAATAAACTGCATCCCCT+CGG 0.537857 1:-35198304 None:intergenic
TGCTAAGATCACTGATCAAG+AGG 0.544299 1:-35198834 None:intergenic
TCAGACGCCGCTTTCACTGG+CGG 0.550246 1:+35197530 MsG0180002234.01.T01:CDS
GCGAGGCCCGCCAGTGAAAG+CGG 0.556128 1:-35197537 None:intergenic
GAAATATATTAGAAACAGAA+AGG 0.558448 1:-35198641 None:intergenic
CATCGGTGGATTTGGACTTG+AGG 0.564056 1:-35197466 None:intergenic
ATCCCCTCGGTGGTCATGAA+GGG 0.571981 1:-35198291 None:intergenic
AAGCTACCAACTGATCTTGG+AGG 0.580889 1:-35198150 None:intergenic
GGCGAGGTTGTTGAGATCAT+CGG 0.582316 1:-35197483 None:intergenic
GTCGAGAAGCTGTTGTTGTG+TGG 0.586119 1:-35197441 None:intergenic
TGCATTAGCAAAGATGAGGC+GGG 0.588872 1:-35198175 None:intergenic
TTTGAATGGAAGCTCAGTCA+AGG 0.589562 1:+35198266 MsG0180002234.01.T01:CDS
GTTCCCTTCATGACCACCGA+GGG 0.602185 1:+35198288 MsG0180002234.01.T01:CDS
TCGAGAAGCTGTTGTTGTGT+GGG 0.605173 1:-35197440 None:intergenic
GACGATAGAAACAAGGTGAG+AGG 0.606218 1:-35197504 None:intergenic
TATGTTGAAGGAGTTAGGAG+TGG 0.615125 1:+35198557 MsG0180002234.01.T01:CDS
CTGAGAGGACGATAGAAACA+AGG 0.615824 1:-35197511 None:intergenic
GTGCATTAGCAAAGATGAGG+CGG 0.619571 1:-35198176 None:intergenic
CAGTGAAAGCGGCGTCTGAG+AGG 0.622496 1:-35197526 None:intergenic
AGCACAACTTGGAGTGACAA+TGG 0.624764 1:-35197389 None:intergenic
TAAAGATGGACTGTCAGCAT+TGG 0.637494 1:+35198416 MsG0180002234.01.T01:CDS
TAATCAGAAATAAGAAAGGG+TGG 0.640706 1:-35198764 None:intergenic
AGAGTGCATTAGCAAAGATG+AGG 0.641780 1:-35198179 None:intergenic
GAGGTTGTTGAGATCATCGG+TGG 0.666044 1:-35197480 None:intergenic
AATAAACTGCATCCCCTCGG+TGG 0.668287 1:-35198301 None:intergenic
TAGAAACAAGGTGAGAGGCG+AGG 0.684792 1:-35197499 None:intergenic
CATAAGCGTAATAAAATGAG+CGG 0.689443 1:+35196236 None:intergenic
ATACACCATCAACAAAAGAG+AGG 0.697514 1:-35197559 None:intergenic
CCATCAACAAAAGAGAGGCG+AGG 0.704628 1:-35197554 None:intergenic
TTCCCTTCATGACCACCGAG+GGG 0.716157 1:+35198289 MsG0180002234.01.T01:CDS
CTTGGTCATGAAATCAACAG+AGG 0.726746 1:-35197654 None:intergenic
GGTTCCCTTCATGACCACCG+AGG 0.739875 1:+35198287 MsG0180002234.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATATTTGTTATATTGT+AGG + Chr1:35197076-35197095 MsG0180002234.01.T01:intron 10.0%
!!! TGTTTTTATTTTATTTTTGA+TGG - Chr1:35197730-35197749 None:intergenic 10.0%
!! AAAAAAAATCTATAGTACTA+AGG + Chr1:35197887-35197906 MsG0180002234.01.T01:intron 15.0%
!! ATAAAGAAAATAGATTGTTA+TGG + Chr1:35196907-35196926 MsG0180002234.01.T01:intron 15.0%
!! ATTATACACTTAAACAAATT+TGG + Chr1:35196949-35196968 MsG0180002234.01.T01:intron 15.0%
!! ATTTCATGTAAATTAATTCA+AGG + Chr1:35197764-35197783 MsG0180002234.01.T01:intron 15.0%
!! TAAAGAAAATAGATTGTTAT+GGG + Chr1:35196908-35196927 MsG0180002234.01.T01:intron 15.0%
!! TCTATATCTATACTTATAAT+TGG + Chr1:35196606-35196625 MsG0180002234.01.T01:intron 15.0%
!! TTTCATGTAAATTAATTCAA+GGG + Chr1:35197765-35197784 MsG0180002234.01.T01:intron 15.0%
!!! ACTGATTTTTAAATTTGATA+TGG + Chr1:35198047-35198066 MsG0180002234.01.T01:intron 15.0%
!! GAAATATATTAGAAACAGAA+AGG - Chr1:35198644-35198663 None:intergenic 20.0%
!! GACATTGAAAAAGATAAATA+TGG + Chr1:35196480-35196499 MsG0180002234.01.T01:intron 20.0%
!! GATTAAAGAAGTGAATTTAT+GGG + Chr1:35198089-35198108 MsG0180002234.01.T01:CDS 20.0%
!! GTGAAAATTAAACCAATAAA+AGG + Chr1:35197971-35197990 MsG0180002234.01.T01:intron 20.0%
!! TGATTAAAGAAGTGAATTTA+TGG + Chr1:35198088-35198107 MsG0180002234.01.T01:CDS 20.0%
!! TTAAGAATTTAGATTGCATA+TGG - Chr1:35197214-35197233 None:intergenic 20.0%
!!! ACTATAGATTTTTTTTGAAG+AGG - Chr1:35197883-35197902 None:intergenic 20.0%
!!! CTCGAATAATTTTTTTTTTG+TGG + Chr1:35197330-35197349 MsG0180002234.01.T01:CDS 20.0%
!!! GAATAATTTTTTTTTTGTGG+TGG + Chr1:35197333-35197352 MsG0180002234.01.T01:CDS 20.0%
!!! TCATATGAAATTTTGAATCT+TGG - Chr1:35198522-35198541 None:intergenic 20.0%
! AAGACAATTTCACAAAATTC+TGG + Chr1:35197137-35197156 MsG0180002234.01.T01:intron 25.0%
! ATTATATACTTGCGAAATCA+CGG - Chr1:35196889-35196908 None:intergenic 25.0%
! CCTACAAAATAGTATTCTTA+TGG - Chr1:35197001-35197020 None:intergenic 25.0%
! CTCTAATCAGAAATAAGAAA+GGG - Chr1:35198770-35198789 None:intergenic 25.0%
! GGACAAAGTAGATTTATAAT+TGG - Chr1:35197636-35197655 None:intergenic 25.0%
! TCTCTAATCAGAAATAAGAA+AGG - Chr1:35198771-35198790 None:intergenic 25.0%
! TGATGCTAGAAAACAATAAA+GGG - Chr1:35197929-35197948 None:intergenic 25.0%
! TTCATTGAAGTAAATGAAGA+AGG + Chr1:35198672-35198691 MsG0180002234.01.T01:CDS 25.0%
! TTCTTTAATCAGTGTAGAAT+TGG - Chr1:35197819-35197838 None:intergenic 25.0%
! TTGATAAATAATGAGCAGAT+TGG + Chr1:35197243-35197262 MsG0180002234.01.T01:intron 25.0%
! TTGATGCTAGAAAACAATAA+AGG - Chr1:35197930-35197949 None:intergenic 25.0%
!! AGCATAAGAAAACCTTTTAT+TGG - Chr1:35197986-35198005 None:intergenic 25.0%
!! CCATAAGAATACTATTTTGT+AGG + Chr1:35196998-35197017 MsG0180002234.01.T01:intron 25.0%
!! GTTTAAATTTTTCGCATGTT+AGG - Chr1:35197280-35197299 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG + Chr1:35198252-35198271 MsG0180002234.01.T01:CDS 25.0%
!!! CGAGATTGTATTAGTTTTAA+GGG - Chr1:35197314-35197333 None:intergenic 25.0%
!!! TCGAGATTGTATTAGTTTTA+AGG - Chr1:35197315-35197334 None:intergenic 25.0%
ACAGATTGCTGTGAAAAAAA+AGG - Chr1:35197698-35197717 None:intergenic 30.0%
AGATTATAGTGTAGTAAGTC+AGG - Chr1:35198462-35198481 None:intergenic 30.0%
CAATAAAAAGAGCGAAAAGA+TGG + Chr1:35196851-35196870 MsG0180002234.01.T01:intron 30.0%
CAGATTGCTGTGAAAAAAAA+GGG - Chr1:35197697-35197716 None:intergenic 30.0%
CTACTTTCAATAACAATCCT+AGG + Chr1:35197790-35197809 MsG0180002234.01.T01:intron 30.0%
CTTCGTCTTCTTTATAAGAA+AGG + Chr1:35198348-35198367 MsG0180002234.01.T01:CDS 30.0%
GAGGAAGAAGTTCTTTAATA+AGG - Chr1:35198134-35198153 None:intergenic 30.0%
TAAATAATGAGCAGATTGGT+TGG + Chr1:35197247-35197266 MsG0180002234.01.T01:intron 30.0%
TAATCAGAAATAAGAAAGGG+TGG - Chr1:35198767-35198786 None:intergenic 30.0%
TGAAACTTCTCATATGTTGA+AGG + Chr1:35198545-35198564 MsG0180002234.01.T01:CDS 30.0%
TTATATACTTGCGAAATCAC+GGG - Chr1:35196888-35196907 None:intergenic 30.0%
TTTCTTCCAAATGCTAAAGA+TGG + Chr1:35198402-35198421 MsG0180002234.01.T01:CDS 30.0%
!!! AATTTTTTTTTTGTGGTGGC+CGG + Chr1:35197337-35197356 MsG0180002234.01.T01:CDS 30.0%
ACAATGGCGAAAAATATGCA+AGG - Chr1:35197376-35197395 None:intergenic 35.0%
ATACACCATCAACAAAAGAG+AGG - Chr1:35197562-35197581 None:intergenic 35.0%
GCTAATGCACTCTACTTTAA+AGG + Chr1:35198189-35198208 MsG0180002234.01.T01:CDS 35.0%
GTCTTGTATTTATGCAGTCT+TGG - Chr1:35197177-35197196 None:intergenic 35.0%
TCTCATATGTTGAAGGAGTT+AGG + Chr1:35198552-35198571 MsG0180002234.01.T01:CDS 35.0%
TGCTAGAAAACAATAAAGGG+AGG - Chr1:35197926-35197945 None:intergenic 35.0%
! GGAAGACAAGATTCTTTTGA+AGG - Chr1:35197615-35197634 None:intergenic 35.0%
! TAACAAAGTGTTTCGTCACA+TGG - Chr1:35197856-35197875 None:intergenic 35.0%
!! GACAAGATTCTTTTGAAGGA+AGG - Chr1:35197611-35197630 None:intergenic 35.0%
!!! CTCTTTTGTTGATGGTGTAT+GGG + Chr1:35197562-35197581 MsG0180002234.01.T01:CDS 35.0%
!!! TCTCTTTTGTTGATGGTGTA+TGG + Chr1:35197561-35197580 MsG0180002234.01.T01:CDS 35.0%
ACTGGAACCATTCTCTTTGT+TGG + Chr1:35198798-35198817 MsG0180002234.01.T01:CDS 40.0%
AGAAAATAACCCCTTTCGAG+AGG + Chr1:35196334-35196353 MsG0180002234.01.T01:intron 40.0%
AGAGTGCATTAGCAAAGATG+AGG - Chr1:35198182-35198201 None:intergenic 40.0%
ATCAATAAACTGCATCCCCT+CGG - Chr1:35198307-35198326 None:intergenic 40.0%
CACTTGTCCAACAAAGAGAA+TGG - Chr1:35198808-35198827 None:intergenic 40.0%
CAGTGTAGAATTGGTATCCT+AGG - Chr1:35197810-35197829 None:intergenic 40.0%
CTGATTAGAGAAGATTCGAC+TGG + Chr1:35198780-35198799 MsG0180002234.01.T01:CDS 40.0%
CTTGGTCATGAAATCAACAG+AGG - Chr1:35197657-35197676 None:intergenic 40.0%
GAAGGAAGGTTGAAGAGAAA+GGG - Chr1:35197597-35197616 None:intergenic 40.0%
GACAGTCCATCTTTAGCATT+TGG - Chr1:35198411-35198430 None:intergenic 40.0%
GGAATCAGACGTTTGATGTA+TGG + Chr1:35198217-35198236 MsG0180002234.01.T01:CDS 40.0%
GTTAAGCTACCAACTGATCT+TGG - Chr1:35198156-35198175 None:intergenic 40.0%
TATGTTGAAGGAGTTAGGAG+TGG + Chr1:35198557-35198576 MsG0180002234.01.T01:CDS 40.0%
TCATCTACTTCTACTTCAGC+AGG - Chr1:35198489-35198508 None:intergenic 40.0%
TGAAGGAAGGTTGAAGAGAA+AGG - Chr1:35197598-35197617 None:intergenic 40.0%
TGACTGAGCTTCCATTCAAA+AGG - Chr1:35198266-35198285 None:intergenic 40.0%
TGGGCTGAAAAAGAGACAAA+TGG + Chr1:35198108-35198127 MsG0180002234.01.T01:CDS 40.0%
TTTGAATGGAAGCTCAGTCA+AGG + Chr1:35198266-35198285 MsG0180002234.01.T01:CDS 40.0%
! CACTCTACTTTAAAGGAGCA+TGG + Chr1:35198196-35198215 MsG0180002234.01.T01:CDS 40.0%
!! ACCATTTTTGTCAAACCTCC+CGG - Chr1:35198597-35198616 None:intergenic 40.0%
!! AGTGGTTTTACCTTTCACTC+CGG + Chr1:35198575-35198594 MsG0180002234.01.T01:CDS 40.0%
!! CTCTGTTGATTTCATGACCA+AGG + Chr1:35197655-35197674 MsG0180002234.01.T01:CDS 40.0%
!! TAAAGATGGACTGTCAGCAT+TGG + Chr1:35198416-35198435 MsG0180002234.01.T01:CDS 40.0%
AAGCTACCAACTGATCTTGG+AGG - Chr1:35198153-35198172 None:intergenic 45.0%
AGCACAACTTGGAGTGACAA+TGG - Chr1:35197392-35197411 None:intergenic 45.0%
AGCCCAAAATCCTCTCGAAA+GGG - Chr1:35196347-35196366 None:intergenic 45.0%
CGAAAAATATGCAAGGTCCG+GGG - Chr1:35197369-35197388 None:intergenic 45.0%
CGATGATGCTTAGCACAACT+TGG - Chr1:35197403-35197422 None:intergenic 45.0%
CTGAGAGGACGATAGAAACA+AGG - Chr1:35197514-35197533 None:intergenic 45.0%
CTTCTTCCTCCAAGATCAGT+TGG + Chr1:35198144-35198163 MsG0180002234.01.T01:CDS 45.0%
GACGATAGAAACAAGGTGAG+AGG - Chr1:35197507-35197526 None:intergenic 45.0%
GAGCTGTGTAACACAAACCT+TGG - Chr1:35197675-35197694 None:intergenic 45.0%
GCGAAAAATATGCAAGGTCC+GGG - Chr1:35197370-35197389 None:intergenic 45.0%
GGCGAAAAATATGCAAGGTC+CGG - Chr1:35197371-35197390 None:intergenic 45.0%
GGGAGGTTTGACAAAAATGG+TGG + Chr1:35198596-35198615 MsG0180002234.01.T01:CDS 45.0%
GTGCATTAGCAAAGATGAGG+CGG - Chr1:35198179-35198198 None:intergenic 45.0%
TCCGGGAGGTTTGACAAAAA+TGG + Chr1:35198593-35198612 MsG0180002234.01.T01:CDS 45.0%
TCGAGAAGCTGTTGTTGTGT+GGG - Chr1:35197443-35197462 None:intergenic 45.0%
TGCATTAGCAAAGATGAGGC+GGG - Chr1:35198178-35198197 None:intergenic 45.0%
TTCGTCACATGGCACATACA+TGG - Chr1:35197845-35197864 None:intergenic 45.0%
! AACCCCTTTCGAGAGGATTT+TGG + Chr1:35196341-35196360 MsG0180002234.01.T01:intron 45.0%
! ACCCCTTTCGAGAGGATTTT+GGG + Chr1:35196342-35196361 MsG0180002234.01.T01:intron 45.0%
! GTTGAGATCATCGGTGGATT+TGG - Chr1:35197477-35197496 None:intergenic 45.0%
!! GTCAGCATTGGTTGAGAAGT+TGG + Chr1:35198428-35198447 MsG0180002234.01.T01:CDS 45.0%
!! GTGGTTTTACCTTTCACTCC+GGG + Chr1:35198576-35198595 MsG0180002234.01.T01:CDS 45.0%
!! TATATATATATATATATATG+TGG + Chr1:35196639-35196658 MsG0180002234.01.T01:intron 5.0%
!! TTATAAGAAAATTTATTTAA+AGG - Chr1:35196394-35196413 None:intergenic 5.0%
!! TTATAATAATGTTATATTAT+TGG + Chr1:35196408-35196427 MsG0180002234.01.T01:intron 5.0%
!!! AAATATCTTTTTTTTTTTTT+TGG + Chr1:35196563-35196582 MsG0180002234.01.T01:intron 5.0%
AATAAACTGCATCCCCTCGG+TGG - Chr1:35198304-35198323 None:intergenic 50.0%
CAGCCCAAAATCCTCTCGAA+AGG - Chr1:35196348-35196367 None:intergenic 50.0%
CCATCAACAAAAGAGAGGCG+AGG - Chr1:35197557-35197576 None:intergenic 50.0%
GAGGTTGTTGAGATCATCGG+TGG - Chr1:35197483-35197502 None:intergenic 50.0%
GCCCAAAATCCTCTCGAAAG+GGG - Chr1:35196346-35196365 None:intergenic 50.0%
GGCGAGGTTGTTGAGATCAT+CGG - Chr1:35197486-35197505 None:intergenic 50.0%
GTCGAGAAGCTGTTGTTGTG+TGG - Chr1:35197444-35197463 None:intergenic 50.0%
TAGAAACAAGGTGAGAGGCG+AGG - Chr1:35197502-35197521 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + Chr1:35196657-35196676 MsG0180002234.01.T01:intron 50.0%
! CATCGGTGGATTTGGACTTG+AGG - Chr1:35197469-35197488 None:intergenic 50.0%
! CCTCGCCTCTCTTTTGTTGA+TGG + Chr1:35197554-35197573 MsG0180002234.01.T01:CDS 50.0%
! GTTTTACCTTTCACTCCGGG+AGG + Chr1:35198579-35198598 MsG0180002234.01.T01:CDS 50.0%
ATCCCCTCGGTGGTCATGAA+GGG - Chr1:35198294-35198313 None:intergenic 55.0%
GTCAAACCTCCCGGAGTGAA+AGG - Chr1:35198588-35198607 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG + Chr1:35197407-35197426 MsG0180002234.01.T01:CDS 55.0%
GTTCCCTTCATGACCACCGA+GGG + Chr1:35198288-35198307 MsG0180002234.01.T01:CDS 55.0%
TTCCCTTCATGACCACCGAG+GGG + Chr1:35198289-35198308 MsG0180002234.01.T01:CDS 55.0%
!! ATCATCGCTGCTGGCTCTGA+GGG + Chr1:35197416-35197435 MsG0180002234.01.T01:CDS 55.0%
CAGTGAAAGCGGCGTCTGAG+AGG - Chr1:35197529-35197548 None:intergenic 60.0%
CATCCCCTCGGTGGTCATGA+AGG - Chr1:35198295-35198314 None:intergenic 60.0%
GAAGCTGCTGCAGCTAGTGC+TGG + Chr1:35198699-35198718 MsG0180002234.01.T01:CDS 60.0%
GGTTCCCTTCATGACCACCG+AGG + Chr1:35198287-35198306 MsG0180002234.01.T01:CDS 60.0%
! CTCTCAGACGCCGCTTTCAC+TGG + Chr1:35197527-35197546 MsG0180002234.01.T01:CDS 60.0%
! TCAGACGCCGCTTTCACTGG+CGG + Chr1:35197530-35197549 MsG0180002234.01.T01:CDS 60.0%
!! CATCATCGCTGCTGGCTCTG+AGG + Chr1:35197415-35197434 MsG0180002234.01.T01:CDS 60.0%
GCAAGGTCCGGGGTTCGAAC+CGG - Chr1:35197359-35197378 None:intergenic 65.0%
! CAGACGCCGCTTTCACTGGC+GGG + Chr1:35197531-35197550 MsG0180002234.01.T01:CDS 65.0%
GCGAGGCCCGCCAGTGAAAG+CGG - Chr1:35197540-35197559 None:intergenic 70.0%
!! GTGGTGGCCGGTTCGAACCC+CGG + Chr1:35197349-35197368 MsG0180002234.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 35196251 35198848 35196251 ID=MsG0180002234.01;Name=MsG0180002234.01
Chr1 mRNA 35196251 35198848 35196251 ID=MsG0180002234.01.T01;Parent=MsG0180002234.01;Name=MsG0180002234.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.66|0.5|0.33|3|0|397
Chr1 exon 35196251 35196257 35196251 ID=MsG0180002234.01.T01:exon:2128;Parent=MsG0180002234.01.T01
Chr1 exon 35197261 35197676 35197261 ID=MsG0180002234.01.T01:exon:2129;Parent=MsG0180002234.01.T01
Chr1 exon 35198078 35198848 35198078 ID=MsG0180002234.01.T01:exon:2130;Parent=MsG0180002234.01.T01
Chr1 CDS 35196251 35196257 35196251 ID=MsG0180002234.01.T01:cds;Parent=MsG0180002234.01.T01
Chr1 CDS 35197261 35197676 35197261 ID=MsG0180002234.01.T01:cds;Parent=MsG0180002234.01.T01
Chr1 CDS 35198078 35198848 35198078 ID=MsG0180002234.01.T01:cds;Parent=MsG0180002234.01.T01
Gene Sequence

>MsG0180002234.01.T01

ATGAGCGATTGGTTGGCTTCACGCCTAACATGCGAAAAATTTAAACTACGAAAACTACCCTTAAAACTAATACAATCTCGAATAATTTTTTTTTTGTGGTGGCCGGTTCGAACCCCGGACCTTGCATATTTTTCGCCATTGTCACTCCAAGTTGTGCTAAGCATCATCGCTGCTGGCTCTGAGGGTCCCACACAACAACAGCTTCTCGACTTCCTCAAGTCCAAATCCACCGATGATCTCAACAACCTCGCCTCTCACCTTGTTTCTATCGTCCTCTCAGACGCCGCTTTCACTGGCGGGCCTCGCCTCTCTTTTGTTGATGGTGTATGGGTTGAACAAACCCTTTCTCTTCAACCTTCCTTCAAAAGAATCTTGTCTTCCAATTATAAATCTACTTTGTCCTCTGTTGATTTCATGACCAAGTCTGCTGAAGTGATTAAAGAAGTGAATTTATGGGCTGAAAAAGAGACAAATGGCCTTATTAAAGAACTTCTTCCTCCAAGATCAGTTGGTAGCTTAACCCGCCTCATCTTTGCTAATGCACTCTACTTTAAAGGAGCATGGAATCAGACGTTTGATGTATGGAAAACGAAAGACTATGATTTTCACCTTTTGAATGGAAGCTCAGTCAAGGTTCCCTTCATGACCACCGAGGGGATGCAGTTTATTGATGAATACTATGATTATAAAGTTCTTCGTCTTCTTTATAAGAAAGGCGAAGACAAACGTCAATTTTCTATGTACATTTTTCTTCCAAATGCTAAAGATGGACTGTCAGCATTGGTTGAGAAGTTGGCATCTGAACCTGACTTACTACACTATAATCTTCGTCCTGCTGAAGTAGAAGTAGATGAATTCAGAATTCCAAGATTCAAAATTTCATATGAGCTTGAAACTTCTCATATGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCACTCCGGGAGGTTTGACAAAAATGGTGGACTCTTCTCTTGTGAGTGATAGCCTTTCTGTTTCTAATATATTTCACAAATCTTTCATTGAAGTAAATGAAGAAGGCACTGAAGCTGCTGCAGCTAGTGCTGGAGACTGTGACGCTGAGTGTGTCGCGATAGACTTTGTAGCTGACCACCCTTTCTTATTTCTGATTAGAGAAGATTCGACTGGAACCATTCTCTTTGTTGGACAAGTGCTCAATCCTCTTGATCAGTGA

Protein sequence

>MsG0180002234.01.T01

MSDWLASRLTCEKFKLRKLPLKLIQSRIIFFLWWPVRTPDLAYFSPLSLQVVLSIIAAGSEGPTQQQLLDFLKSKSTDDLNNLASHLVSIVLSDAAFTGGPRLSFVDGVWVEQTLSLQPSFKRILSSNYKSTLSSVDFMTKSAEVIKEVNLWAEKETNGLIKELLPPRSVGSLTRLIFANALYFKGAWNQTFDVWKTKDYDFHLLNGSSVKVPFMTTEGMQFIDEYYDYKVLRLLYKKGEDKRQFSMYIFLPNAKDGLSALVEKLASEPDLLHYNLRPAEVEVDEFRIPRFKISYELETSHMLKELGVVLPFTPGGLTKMVDSSLVSDSLSVSNIFHKSFIEVNEEGTEAAAASAGDCDAECVAIDFVADHPFLFLIREDSTGTILFVGQVLNPLDQ*