Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030564.01.T01 | KEH25128.1 | 94.688 | 433 | 22 | 1 | 1 | 432 | 1 | 433 | 0 | 840 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030564.01.T01 | Q9LRQ8 | 37.192 | 406 | 240 | 10 | 32 | 432 | 27 | 422 | 6.72E-75 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030564.01.T01 | A0A072U7M4 | 94.688 | 433 | 22 | 1 | 1 | 432 | 1 | 433 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000192.01 | MsG0680030564.01 | 0.815665 | 8.230600e-52 | 5.709999e-49 |
| MsG0580024443.01 | MsG0680030564.01 | 0.895551 | 8.607281e-76 | 8.974779e-72 |
| MsG0580028960.01 | MsG0680030564.01 | 0.808352 | 3.230138e-50 | 1.842861e-47 |
| MsG0680030564.01 | MsG0680030565.01 | 0.884227 | 2.296582e-71 | 1.503297e-67 |
| MsG0680030564.01 | MsG0780041104.01 | 0.807538 | 4.813225e-50 | 2.687835e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030564.01.T01 | MTR_6g015830 | 94.688 | 433 | 22 | 1 | 1 | 432 | 1 | 433 | 0.0 | 840 |
| MsG0680030564.01.T01 | MTR_6g015850 | 89.583 | 432 | 43 | 1 | 1 | 432 | 1 | 430 | 0.0 | 793 |
| MsG0680030564.01.T01 | MTR_6g015815 | 76.212 | 433 | 102 | 1 | 1 | 432 | 1 | 433 | 0.0 | 681 |
| MsG0680030564.01.T01 | MTR_6g015315 | 56.359 | 401 | 164 | 7 | 38 | 432 | 30 | 425 | 2.55e-149 | 432 |
| MsG0680030564.01.T01 | MTR_6g015320 | 52.847 | 439 | 188 | 8 | 1 | 432 | 1 | 427 | 6.93e-148 | 429 |
| MsG0680030564.01.T01 | MTR_7g014230 | 46.224 | 437 | 213 | 9 | 9 | 432 | 5 | 432 | 5.23e-130 | 383 |
| MsG0680030564.01.T01 | MTR_7g014250 | 45.767 | 437 | 215 | 9 | 9 | 432 | 3 | 430 | 1.83e-129 | 382 |
| MsG0680030564.01.T01 | MTR_7g014330 | 45.287 | 435 | 218 | 8 | 9 | 431 | 3 | 429 | 2.32e-129 | 381 |
| MsG0680030564.01.T01 | MTR_6g015310 | 46.875 | 352 | 136 | 7 | 84 | 432 | 25 | 328 | 1.06e-94 | 288 |
| MsG0680030564.01.T01 | MTR_7g014200 | 40.187 | 428 | 219 | 13 | 30 | 432 | 26 | 441 | 3.19e-90 | 281 |
| MsG0680030564.01.T01 | MTR_7g014360 | 42.778 | 360 | 176 | 8 | 80 | 431 | 22 | 359 | 2.26e-89 | 276 |
| MsG0680030564.01.T01 | MTR_7g014160 | 37.647 | 425 | 239 | 10 | 30 | 432 | 26 | 446 | 4.34e-87 | 273 |
| MsG0680030564.01.T01 | MTR_7g014610 | 38.928 | 429 | 231 | 14 | 30 | 432 | 25 | 448 | 1.85e-83 | 264 |
| MsG0680030564.01.T01 | MTR_7g013850 | 38.551 | 428 | 229 | 12 | 35 | 432 | 30 | 453 | 1.70e-82 | 262 |
| MsG0680030564.01.T01 | MTR_2g089765 | 34.707 | 461 | 254 | 14 | 4 | 432 | 10 | 455 | 7.60e-72 | 234 |
| MsG0680030564.01.T01 | MTR_7g014620 | 34.597 | 422 | 230 | 7 | 30 | 432 | 11 | 405 | 5.18e-70 | 228 |
| MsG0680030564.01.T01 | MTR_3g028210 | 32.366 | 448 | 260 | 14 | 9 | 432 | 9 | 437 | 3.15e-67 | 222 |
| MsG0680030564.01.T01 | MTR_2g089670 | 34.483 | 406 | 237 | 10 | 30 | 417 | 41 | 435 | 1.26e-64 | 215 |
| MsG0680030564.01.T01 | MTR_8g012750 | 36.058 | 416 | 229 | 9 | 28 | 415 | 20 | 426 | 1.55e-63 | 212 |
| MsG0680030564.01.T01 | MTR_7g015860 | 32.675 | 456 | 259 | 11 | 5 | 434 | 2 | 435 | 1.99e-59 | 201 |
| MsG0680030564.01.T01 | MTR_7g014310 | 37.188 | 320 | 145 | 7 | 117 | 432 | 30 | 297 | 5.67e-59 | 195 |
| MsG0680030564.01.T01 | MTR_2g089650 | 33.787 | 441 | 238 | 16 | 25 | 433 | 19 | 437 | 7.18e-59 | 200 |
| MsG0680030564.01.T01 | MTR_2g089755 | 33.566 | 429 | 240 | 14 | 34 | 433 | 37 | 449 | 3.51e-57 | 196 |
| MsG0680030564.01.T01 | MTR_2g089735 | 34.146 | 410 | 234 | 11 | 47 | 433 | 39 | 435 | 7.30e-56 | 192 |
| MsG0680030564.01.T01 | MTR_3g087640 | 34.174 | 436 | 239 | 13 | 27 | 430 | 24 | 443 | 6.59e-54 | 187 |
| MsG0680030564.01.T01 | MTR_7g014630 | 39.552 | 268 | 146 | 9 | 16 | 271 | 11 | 274 | 2.59e-51 | 177 |
| MsG0680030564.01.T01 | MTR_7g014180 | 52.318 | 151 | 68 | 2 | 30 | 176 | 24 | 174 | 4.44e-45 | 155 |
| MsG0680030564.01.T01 | MTR_3g435300 | 34.848 | 264 | 148 | 6 | 30 | 280 | 20 | 272 | 1.86e-33 | 127 |
| MsG0680030564.01.T01 | MTR_2g089665 | 41.477 | 176 | 91 | 4 | 9 | 175 | 3 | 175 | 2.92e-29 | 117 |
| MsG0680030564.01.T01 | MTR_7g014205 | 43.511 | 131 | 59 | 3 | 300 | 427 | 2 | 120 | 1.80e-26 | 103 |
| MsG0680030564.01.T01 | MTR_8g075610 | 27.441 | 379 | 224 | 16 | 50 | 411 | 30 | 374 | 1.08e-23 | 102 |
| MsG0680030564.01.T01 | MTR_7g014670 | 35.714 | 154 | 94 | 3 | 284 | 432 | 79 | 232 | 1.43e-23 | 99.8 |
| MsG0680030564.01.T01 | MTR_7g014210 | 44.828 | 116 | 59 | 3 | 318 | 429 | 24 | 138 | 1.66e-23 | 97.1 |
| MsG0680030564.01.T01 | MTR_7g014340 | 55.556 | 72 | 30 | 1 | 9 | 80 | 3 | 72 | 1.45e-20 | 86.7 |
| MsG0680030564.01.T01 | MTR_2g064495 | 26.344 | 372 | 239 | 12 | 50 | 411 | 39 | 385 | 9.54e-20 | 91.3 |
| MsG0680030564.01.T01 | MTR_2g105330 | 26.344 | 372 | 239 | 12 | 50 | 411 | 39 | 385 | 1.95e-19 | 90.5 |
| MsG0680030564.01.T01 | MTR_3g088420 | 23.645 | 406 | 261 | 12 | 25 | 414 | 15 | 387 | 4.05e-19 | 89.4 |
| MsG0680030564.01.T01 | MTR_4g094842 | 24.800 | 375 | 238 | 11 | 67 | 422 | 59 | 408 | 4.28e-19 | 89.7 |
| MsG0680030564.01.T01 | MTR_8g041770 | 24.257 | 404 | 263 | 15 | 31 | 421 | 27 | 400 | 7.89e-17 | 82.8 |
| MsG0680030564.01.T01 | MTR_8g096530 | 27.794 | 349 | 222 | 11 | 70 | 412 | 59 | 383 | 1.58e-16 | 81.6 |
| MsG0680030564.01.T01 | MTR_7g026860 | 25.908 | 413 | 238 | 14 | 27 | 411 | 17 | 389 | 4.66e-16 | 80.1 |
| MsG0680030564.01.T01 | MTR_4g022800 | 24.823 | 423 | 253 | 15 | 21 | 414 | 10 | 396 | 6.50e-16 | 79.7 |
| MsG0680030564.01.T01 | MTR_7g014220 | 64.151 | 53 | 19 | 0 | 28 | 80 | 12 | 64 | 1.64e-15 | 71.6 |
| MsG0680030564.01.T01 | MTR_6g045553 | 24.703 | 421 | 262 | 17 | 34 | 421 | 35 | 433 | 2.26e-15 | 78.2 |
| MsG0680030564.01.T01 | MTR_4g094828 | 23.866 | 419 | 249 | 15 | 27 | 414 | 22 | 401 | 1.19e-14 | 75.9 |
| MsG0680030564.01.T01 | MTR_0190s0020 | 26.064 | 376 | 223 | 15 | 67 | 421 | 60 | 401 | 1.41e-14 | 75.9 |
| MsG0680030564.01.T01 | MTR_7g084940 | 24.581 | 358 | 222 | 15 | 70 | 412 | 69 | 393 | 1.97e-14 | 75.5 |
| MsG0680030564.01.T01 | MTR_3g026950 | 24.219 | 384 | 227 | 14 | 64 | 411 | 48 | 403 | 4.08e-14 | 74.3 |
| MsG0680030564.01.T01 | MTR_4g022670 | 24.940 | 417 | 259 | 15 | 21 | 414 | 10 | 395 | 4.69e-14 | 74.3 |
| MsG0680030564.01.T01 | MTR_4g022720 | 23.919 | 393 | 246 | 14 | 46 | 414 | 26 | 389 | 4.85e-14 | 73.9 |
| MsG0680030564.01.T01 | MTR_3g049150 | 24.524 | 420 | 258 | 15 | 22 | 411 | 9 | 399 | 7.36e-14 | 73.6 |
| MsG0680030564.01.T01 | MTR_3g101930 | 25.193 | 389 | 222 | 15 | 57 | 414 | 57 | 407 | 9.68e-14 | 73.2 |
| MsG0680030564.01.T01 | MTR_4g094835 | 23.153 | 406 | 254 | 15 | 46 | 424 | 34 | 408 | 1.24e-13 | 72.8 |
| MsG0680030564.01.T01 | MTR_7g085990 | 24.848 | 330 | 211 | 10 | 65 | 377 | 50 | 359 | 4.03e-13 | 71.2 |
| MsG0680030564.01.T01 | MTR_7g084910 | 24.022 | 358 | 210 | 14 | 70 | 412 | 70 | 380 | 5.80e-13 | 70.9 |
| MsG0680030564.01.T01 | MTR_3g070170 | 24.289 | 387 | 244 | 16 | 65 | 421 | 61 | 428 | 6.13e-13 | 70.9 |
| MsG0680030564.01.T01 | MTR_7g086000 | 24.728 | 368 | 226 | 13 | 73 | 411 | 63 | 408 | 1.32e-12 | 69.7 |
| MsG0680030564.01.T01 | MTR_3g026310 | 23.041 | 434 | 278 | 16 | 21 | 427 | 10 | 414 | 2.02e-12 | 68.9 |
| MsG0680030564.01.T01 | MTR_7g085930 | 24.021 | 383 | 234 | 13 | 65 | 411 | 54 | 415 | 3.99e-12 | 68.2 |
| MsG0680030564.01.T01 | MTR_8g467580 | 26.698 | 427 | 229 | 24 | 20 | 411 | 8 | 385 | 7.69e-12 | 67.4 |
| MsG0680030564.01.T01 | MTR_5g090810 | 22.983 | 409 | 260 | 13 | 32 | 411 | 29 | 411 | 2.80e-11 | 65.5 |
| MsG0680030564.01.T01 | MTR_5g090830 | 23.614 | 415 | 250 | 16 | 32 | 411 | 29 | 411 | 4.21e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030564.01.T01 | AT3G29635 | 36.239 | 436 | 258 | 10 | 7 | 432 | 2 | 427 | 1.80e-83 | 264 |
| MsG0680030564.01.T01 | AT5G39090 | 37.772 | 413 | 237 | 12 | 27 | 432 | 21 | 420 | 1.46e-78 | 251 |
| MsG0680030564.01.T01 | AT5G39080 | 35.056 | 445 | 258 | 15 | 7 | 433 | 4 | 435 | 2.45e-76 | 245 |
| MsG0680030564.01.T01 | AT3G29670 | 37.192 | 406 | 240 | 10 | 32 | 432 | 27 | 422 | 6.85e-76 | 244 |
| MsG0680030564.01.T01 | AT3G29680 | 35.971 | 417 | 240 | 12 | 29 | 433 | 20 | 421 | 3.62e-72 | 234 |
| MsG0680030564.01.T01 | AT5G39050 | 36.161 | 448 | 256 | 16 | 3 | 432 | 5 | 440 | 8.15e-72 | 234 |
| MsG0680030564.01.T01 | AT5G61160 | 31.982 | 444 | 262 | 13 | 7 | 432 | 2 | 423 | 2.80e-68 | 224 |
| MsG0680030564.01.T01 | AT3G29590 | 32.965 | 452 | 248 | 13 | 1 | 430 | 1 | 419 | 1.09e-66 | 220 |
| MsG0680030564.01.T01 | AT1G03940 | 31.385 | 462 | 268 | 15 | 1 | 435 | 1 | 440 | 3.56e-55 | 190 |
| MsG0680030564.01.T01 | AT1G03495 | 32.123 | 358 | 197 | 13 | 1 | 335 | 1 | 335 | 1.35e-39 | 145 |
| MsG0680030564.01.T01 | AT3G29720 | 35.122 | 205 | 113 | 9 | 107 | 303 | 26 | 218 | 3.65e-23 | 97.4 |
| MsG0680030564.01.T01 | AT5G07850 | 25.176 | 425 | 270 | 14 | 9 | 414 | 9 | 404 | 7.73e-17 | 82.8 |
| MsG0680030564.01.T01 | AT5G48930 | 25.401 | 374 | 241 | 15 | 50 | 411 | 39 | 386 | 6.76e-16 | 79.7 |
| MsG0680030564.01.T01 | AT5G67150 | 24.685 | 397 | 256 | 14 | 34 | 414 | 29 | 398 | 1.14e-15 | 79.3 |
| MsG0680030564.01.T01 | AT5G42830 | 23.989 | 371 | 226 | 14 | 64 | 410 | 58 | 396 | 4.11e-15 | 77.4 |
| MsG0680030564.01.T01 | AT3G50270 | 25.304 | 411 | 246 | 17 | 27 | 411 | 22 | 397 | 4.38e-14 | 74.3 |
| MsG0680030564.01.T01 | AT3G29690 | 33.594 | 128 | 79 | 3 | 309 | 432 | 31 | 156 | 1.47e-13 | 69.3 |
| MsG0680030564.01.T01 | AT5G57840 | 23.709 | 426 | 262 | 18 | 9 | 410 | 4 | 390 | 1.47e-12 | 69.7 |
| MsG0680030564.01.T01 | AT2G19070 | 23.724 | 392 | 245 | 15 | 47 | 410 | 37 | 402 | 1.92e-12 | 69.3 |
| MsG0680030564.01.T01 | AT3G26040 | 26.244 | 442 | 244 | 18 | 21 | 431 | 9 | 399 | 1.38e-11 | 66.6 |
| MsG0680030564.01.T01 | AT5G67160 | 23.131 | 428 | 261 | 15 | 5 | 411 | 2 | 382 | 4.36e-11 | 65.1 |
Find 51 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTTCTACTATGTATAT+TGG | 0.207631 | 6:+5320117 | MsG0680030564.01.T01:CDS |
| AAGATCTTTGAAACTTTCTT+TGG | 0.225581 | 6:-5319488 | None:intergenic |
| TGTTAAATGGAGCTGAAAAT+TGG | 0.251450 | 6:+5320259 | MsG0680030564.01.T01:CDS |
| TAATTCCAATTCCATTATTA+TGG | 0.255026 | 6:-5319792 | None:intergenic |
| CAATTTCTACTATGTATATT+GGG | 0.289300 | 6:+5320118 | MsG0680030564.01.T01:CDS |
| GGATTTGTAAATGCTTTAGA+AGG | 0.320887 | 6:+5320198 | MsG0680030564.01.T01:CDS |
| AGTTACAAGTGCTTATGTTT+TGG | 0.325752 | 6:+5320011 | MsG0680030564.01.T01:CDS |
| GAAAGTGAGTGTTTAAGATT+TGG | 0.326553 | 6:-5319349 | None:intergenic |
| CAAGACCATAATAATGGAAT+TGG | 0.332443 | 6:+5319787 | MsG0680030564.01.T01:CDS |
| AAAGATGTTGGAGTGTTAAA+TGG | 0.336474 | 6:+5320246 | MsG0680030564.01.T01:CDS |
| GGTAAAATTTACTCTATTGC+TGG | 0.339239 | 6:+5320309 | MsG0680030564.01.T01:CDS |
| CAATACTTTCTCCCTCTTGC+TGG | 0.346664 | 6:+5319382 | MsG0680030564.01.T01:CDS |
| TATGGATTGTAGATCAAGAT+TGG | 0.348320 | 6:+5320089 | MsG0680030564.01.T01:CDS |
| TTGATACAAGACCATAATAA+TGG | 0.367593 | 6:+5319781 | MsG0680030564.01.T01:CDS |
| CCCTTGACATAGTTTATGAT+TGG | 0.367882 | 6:-5319436 | None:intergenic |
| AGTGAAGTTGGTGATGAAAA+AGG | 0.373809 | 6:-5319220 | None:intergenic |
| TTAACTACATCATGTTTCAT+TGG | 0.375298 | 6:-5319892 | None:intergenic |
| ACACACCATGCTGCTTTAGA+TGG | 0.377821 | 6:+5319643 | MsG0680030564.01.T01:CDS |
| GTTAAATGGAGCTGAAAATT+GGG | 0.387315 | 6:+5320260 | MsG0680030564.01.T01:CDS |
| TATATTGGGAATTGTATTGC+AGG | 0.401235 | 6:+5320132 | MsG0680030564.01.T01:CDS |
| TTTGAAAATTTCTCATGAAA+AGG | 0.401565 | 6:+5319558 | MsG0680030564.01.T01:CDS |
| CTCTTGCTGGTAACATAACT+TGG | 0.407662 | 6:+5319395 | MsG0680030564.01.T01:CDS |
| GACATAGTTTATGATTGGTT+TGG | 0.421691 | 6:-5319431 | None:intergenic |
| TGGGTTTCTAATATGTATAG+TGG | 0.431498 | 6:+5320279 | MsG0680030564.01.T01:CDS |
| CTCTTGGTGAAAGTAGGAAT+AGG | 0.441420 | 6:+5320424 | MsG0680030564.01.T01:CDS |
| ATGACTTCAACTGATAAAAC+AGG | 0.450314 | 6:+5320393 | MsG0680030564.01.T01:CDS |
| GTACTATAAAACTCAAACCT+TGG | 0.458161 | 6:-5320336 | None:intergenic |
| TTGAATAGTGTGAAAGATGT+TGG | 0.459417 | 6:+5320234 | MsG0680030564.01.T01:CDS |
| AATATGTATAGTGGAATTGA+AGG | 0.478268 | 6:+5320288 | MsG0680030564.01.T01:CDS |
| TAGAAGAAGAGAAGTTCAAC+TGG | 0.490649 | 6:-5319283 | None:intergenic |
| AAAGTGAGTGGAAGTGAAGT+TGG | 0.513468 | 6:-5319232 | None:intergenic |
| TTTGAGACAAAGAACTTGGT+TGG | 0.518680 | 6:+5320168 | MsG0680030564.01.T01:CDS |
| ACCAATCATAAACTATGTCA+AGG | 0.533719 | 6:+5319435 | MsG0680030564.01.T01:CDS |
| AGCAAAAGCAGAACAACCTA+AGG | 0.533952 | 6:+5320041 | MsG0680030564.01.T01:CDS |
| GATTTGTAAATGCTTTAGAA+GGG | 0.534694 | 6:+5320199 | MsG0680030564.01.T01:CDS |
| TGATTCTTCATGTTGTGCCA+TGG | 0.547919 | 6:-5319146 | None:intergenic |
| GTTACTTTGTTTCCAAACAA+TGG | 0.552487 | 6:+5319601 | MsG0680030564.01.T01:CDS |
| TATACATAGTAGAAATTGAA+GGG | 0.573548 | 6:-5320113 | None:intergenic |
| ATTCAAAAGCTTAAAGAACA+TGG | 0.580692 | 6:+5319943 | MsG0680030564.01.T01:CDS |
| TGTGTTTGAGACAAAGAACT+TGG | 0.581075 | 6:+5320164 | MsG0680030564.01.T01:CDS |
| AAAAGATCAAAGAAAGTGAG+TGG | 0.584138 | 6:-5319244 | None:intergenic |
| TTGGTGAAAGTAGGAATAGG+TGG | 0.588696 | 6:+5320427 | MsG0680030564.01.T01:CDS |
| CAAGTTATGTTACCAGCAAG+AGG | 0.592702 | 6:-5319394 | None:intergenic |
| ACTCTATTGCTGGATCTCCA+AGG | 0.593370 | 6:+5320319 | MsG0680030564.01.T01:CDS |
| ATATACATAGTAGAAATTGA+AGG | 0.602424 | 6:-5320114 | None:intergenic |
| CCAATCATAAACTATGTCAA+GGG | 0.603092 | 6:+5319436 | MsG0680030564.01.T01:CDS |
| GTTGTTGATTTGTTGAAACA+TGG | 0.605909 | 6:+5319826 | MsG0680030564.01.T01:CDS |
| AAGAAGAGAAGTTCAACTGG+TGG | 0.614324 | 6:-5319280 | None:intergenic |
| AGAATTAGAACATGCAACAC+AGG | 0.622767 | 6:-5319698 | None:intergenic |
| GTTGATTTGTTGAAACATGG+TGG | 0.651372 | 6:+5319829 | MsG0680030564.01.T01:CDS |
| AAGTTATGTTACCAGCAAGA+GGG | 0.663928 | 6:-5319393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAATATGAAAATGA+AGG | + | Chr6:5319966-5319985 | MsG0680030564.01.T01:CDS | 10.0% |
| !! | ATATACATAGTAGAAATTGA+AGG | - | Chr6:5320117-5320136 | None:intergenic | 20.0% |
| !! | ATCAATGATCTATCAAAAAA+AGG | - | Chr6:5319766-5319785 | None:intergenic | 20.0% |
| !! | ATGATAAAAAAGATGAATCA+AGG | - | Chr6:5319726-5319745 | None:intergenic | 20.0% |
| !! | CAATTTCTACTATGTATATT+GGG | + | Chr6:5320118-5320137 | MsG0680030564.01.T01:CDS | 20.0% |
| !! | TAATTCCAATTCCATTATTA+TGG | - | Chr6:5319795-5319814 | None:intergenic | 20.0% |
| !! | TATACATAGTAGAAATTGAA+GGG | - | Chr6:5320116-5320135 | None:intergenic | 20.0% |
| !! | TCAATTTCTACTATGTATAT+TGG | + | Chr6:5320117-5320136 | MsG0680030564.01.T01:CDS | 20.0% |
| !! | TTTGAAAATTTCTCATGAAA+AGG | + | Chr6:5319558-5319577 | MsG0680030564.01.T01:CDS | 20.0% |
| !!! | TAAGTACTTTTATGAAATCA+TGG | + | Chr6:5319674-5319693 | MsG0680030564.01.T01:CDS | 20.0% |
| ! | ATTCAAAAGCTTAAAGAACA+TGG | + | Chr6:5319943-5319962 | MsG0680030564.01.T01:CDS | 25.0% |
| ! | CAGAAAAATTCATAATCTTG+AGG | - | Chr6:5319870-5319889 | None:intergenic | 25.0% |
| ! | TTAACTACATCATGTTTCAT+TGG | - | Chr6:5319895-5319914 | None:intergenic | 25.0% |
| ! | TTGATACAAGACCATAATAA+TGG | + | Chr6:5319781-5319800 | MsG0680030564.01.T01:CDS | 25.0% |
| !! | AATATGTATAGTGGAATTGA+AGG | + | Chr6:5320288-5320307 | MsG0680030564.01.T01:CDS | 25.0% |
| !! | AGTGGTTTTCATAATTTCTA+TGG | + | Chr6:5320071-5320090 | MsG0680030564.01.T01:CDS | 25.0% |
| !! | CTCAAGATTATGAATTTTTC+TGG | + | Chr6:5319868-5319887 | MsG0680030564.01.T01:CDS | 25.0% |
| !! | TCACTTTCTTTGATCTTTTA+TGG | + | Chr6:5319248-5319267 | MsG0680030564.01.T01:CDS | 25.0% |
| !! | TCATGAGAAATTTTCAAATG+TGG | - | Chr6:5319556-5319575 | None:intergenic | 25.0% |
| !!! | AAAAAAGGTGTTAGATTTTC+AGG | - | Chr6:5319751-5319770 | None:intergenic | 25.0% |
| !!! | AAGATCTTTGAAACTTTCTT+TGG | - | Chr6:5319491-5319510 | None:intergenic | 25.0% |
| !!! | GAAGTCATATCAACTTTTTT+TGG | - | Chr6:5320381-5320400 | None:intergenic | 25.0% |
| !!! | GAGTTTTATAGTACTGATTT+TGG | + | Chr6:5320345-5320364 | MsG0680030564.01.T01:CDS | 25.0% |
| !!! | GATTTGTAAATGCTTTAGAA+GGG | + | Chr6:5320199-5320218 | MsG0680030564.01.T01:CDS | 25.0% |
| !!! | TATAGTACTGATTTTGGATT+TGG | + | Chr6:5320351-5320370 | MsG0680030564.01.T01:CDS | 25.0% |
| AAAAGATCAAAGAAAGTGAG+TGG | - | Chr6:5319247-5319266 | None:intergenic | 30.0% | |
| AAGAACTTGGTTGGAAAAAA+TGG | + | Chr6:5320177-5320196 | MsG0680030564.01.T01:CDS | 30.0% | |
| ACCAATCATAAACTATGTCA+AGG | + | Chr6:5319435-5319454 | MsG0680030564.01.T01:CDS | 30.0% | |
| ATGACTTCAACTGATAAAAC+AGG | + | Chr6:5320393-5320412 | MsG0680030564.01.T01:CDS | 30.0% | |
| CCAATCATAAACTATGTCAA+GGG | + | Chr6:5319436-5319455 | MsG0680030564.01.T01:CDS | 30.0% | |
| GGTAAAATTTACTCTATTGC+TGG | + | Chr6:5320309-5320328 | MsG0680030564.01.T01:CDS | 30.0% | |
| GTACTATAAAACTCAAACCT+TGG | - | Chr6:5320339-5320358 | None:intergenic | 30.0% | |
| GTTAAATGGAGCTGAAAATT+GGG | + | Chr6:5320260-5320279 | MsG0680030564.01.T01:CDS | 30.0% | |
| TATATTGGGAATTGTATTGC+AGG | + | Chr6:5320132-5320151 | MsG0680030564.01.T01:CDS | 30.0% | |
| TGGGTTTCTAATATGTATAG+TGG | + | Chr6:5320279-5320298 | MsG0680030564.01.T01:CDS | 30.0% | |
| TGTTAAATGGAGCTGAAAAT+TGG | + | Chr6:5320259-5320278 | MsG0680030564.01.T01:CDS | 30.0% | |
| TTGAATAGTGTGAAAGATGT+TGG | + | Chr6:5320234-5320253 | MsG0680030564.01.T01:CDS | 30.0% | |
| ! | AAAGATGTTGGAGTGTTAAA+TGG | + | Chr6:5320246-5320265 | MsG0680030564.01.T01:CDS | 30.0% |
| ! | AGTTACAAGTGCTTATGTTT+TGG | + | Chr6:5320011-5320030 | MsG0680030564.01.T01:CDS | 30.0% |
| ! | ATCTTGAGGCTTTTATTATC+TGG | - | Chr6:5319856-5319875 | None:intergenic | 30.0% |
| ! | CAAGACCATAATAATGGAAT+TGG | + | Chr6:5319787-5319806 | MsG0680030564.01.T01:CDS | 30.0% |
| ! | GAAAGTGAGTGTTTAAGATT+TGG | - | Chr6:5319352-5319371 | None:intergenic | 30.0% |
| ! | GACATAGTTTATGATTGGTT+TGG | - | Chr6:5319434-5319453 | None:intergenic | 30.0% |
| ! | GGATTTGTAAATGCTTTAGA+AGG | + | Chr6:5320198-5320217 | MsG0680030564.01.T01:CDS | 30.0% |
| ! | GTTACTTTGTTTCCAAACAA+TGG | + | Chr6:5319601-5319620 | MsG0680030564.01.T01:CDS | 30.0% |
| ! | TATGGATTGTAGATCAAGAT+TGG | + | Chr6:5320089-5320108 | MsG0680030564.01.T01:CDS | 30.0% |
| !! | GTTGTTGATTTGTTGAAACA+TGG | + | Chr6:5319826-5319845 | MsG0680030564.01.T01:CDS | 30.0% |
| !!! | AAAACCACTTTTTCAACCTT+AGG | - | Chr6:5320060-5320079 | None:intergenic | 30.0% |
| AAGTTATGTTACCAGCAAGA+GGG | - | Chr6:5319396-5319415 | None:intergenic | 35.0% | |
| ACAACCTAAGGTTGAAAAAG+TGG | + | Chr6:5320053-5320072 | MsG0680030564.01.T01:CDS | 35.0% | |
| AGAATTAGAACATGCAACAC+AGG | - | Chr6:5319701-5319720 | None:intergenic | 35.0% | |
| CCAATGCAAAAACCATTGTT+TGG | - | Chr6:5319616-5319635 | None:intergenic | 35.0% | |
| CCCTTGACATAGTTTATGAT+TGG | - | Chr6:5319439-5319458 | None:intergenic | 35.0% | |
| TAGAAGAAGAGAAGTTCAAC+TGG | - | Chr6:5319286-5319305 | None:intergenic | 35.0% | |
| ! | CATTTTCTCTTGGTGAAAGT+AGG | + | Chr6:5320418-5320437 | MsG0680030564.01.T01:CDS | 35.0% |
| ! | CCAAACAATGGTTTTTGCAT+TGG | + | Chr6:5319613-5319632 | MsG0680030564.01.T01:CDS | 35.0% |
| ! | TGTGTTTGAGACAAAGAACT+TGG | + | Chr6:5320164-5320183 | MsG0680030564.01.T01:CDS | 35.0% |
| ! | TTTGAGACAAAGAACTTGGT+TGG | + | Chr6:5320168-5320187 | MsG0680030564.01.T01:CDS | 35.0% |
| !! | AGTGAAGTTGGTGATGAAAA+AGG | - | Chr6:5319223-5319242 | None:intergenic | 35.0% |
| !! | ATTTTCCATCTAAAGCAGCA+TGG | - | Chr6:5319651-5319670 | None:intergenic | 35.0% |
| !! | GTTGATTTGTTGAAACATGG+TGG | + | Chr6:5319829-5319848 | MsG0680030564.01.T01:CDS | 35.0% |
| !!! | AAAACAGGAGCATTTTCTCT+TGG | + | Chr6:5320408-5320427 | MsG0680030564.01.T01:CDS | 35.0% |
| !!! | AGGTTTTGTTGTGTCAAGAT+AGG | - | Chr6:5319203-5319222 | None:intergenic | 35.0% |
| !!! | GGTTTTGTTGTGTCAAGATA+GGG | - | Chr6:5319202-5319221 | None:intergenic | 35.0% |
| AAAGTGAGTGGAAGTGAAGT+TGG | - | Chr6:5319235-5319254 | None:intergenic | 40.0% | |
| AAGAAGAGAAGTTCAACTGG+TGG | - | Chr6:5319283-5319302 | None:intergenic | 40.0% | |
| AGCAAAAGCAGAACAACCTA+AGG | + | Chr6:5320041-5320060 | MsG0680030564.01.T01:CDS | 40.0% | |
| CAAGTTATGTTACCAGCAAG+AGG | - | Chr6:5319397-5319416 | None:intergenic | 40.0% | |
| CTCTTGCTGGTAACATAACT+TGG | + | Chr6:5319395-5319414 | MsG0680030564.01.T01:CDS | 40.0% | |
| CTCTTGGTGAAAGTAGGAAT+AGG | + | Chr6:5320424-5320443 | MsG0680030564.01.T01:CDS | 40.0% | |
| TTGGTGAAAGTAGGAATAGG+TGG | + | Chr6:5320427-5320446 | MsG0680030564.01.T01:CDS | 40.0% | |
| ACTCTATTGCTGGATCTCCA+AGG | + | Chr6:5320319-5320338 | MsG0680030564.01.T01:CDS | 45.0% | |
| CAATACTTTCTCCCTCTTGC+TGG | + | Chr6:5319382-5319401 | MsG0680030564.01.T01:CDS | 45.0% | |
| !! | ACACACCATGCTGCTTTAGA+TGG | + | Chr6:5319643-5319662 | MsG0680030564.01.T01:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 5319148 | 5320455 | 5319148 | ID=MsG0680030564.01;Name=MsG0680030564.01 |
| Chr6 | mRNA | 5319148 | 5320455 | 5319148 | ID=MsG0680030564.01.T01;Parent=MsG0680030564.01;Name=MsG0680030564.01.T01;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|435 |
| Chr6 | exon | 5319148 | 5320455 | 5319148 | ID=MsG0680030564.01.T01:exon:4379;Parent=MsG0680030564.01.T01 |
| Chr6 | CDS | 5319148 | 5320455 | 5319148 | ID=MsG0680030564.01.T01:cds;Parent=MsG0680030564.01.T01 |
| Gene Sequence |
| Protein sequence |
