AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024443.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024443.01.T01 MTR_5g011250 93.385 257 17 0 34 290 100 356 3.87e-178 495
MsG0580024443.01.T01 MTR_3g072810 48.548 241 122 2 36 276 88 326 1.57e-73 229
MsG0580024443.01.T01 MTR_3g072820 41.961 255 146 2 22 276 77 329 3.58e-65 207
MsG0580024443.01.T01 MTR_5g059130 42.745 255 144 2 22 276 79 331 1.15e-63 204
MsG0580024443.01.T01 MTR_5g059140 39.754 244 137 4 22 260 77 315 4.73e-54 179
MsG0580024443.01.T01 MTR_4g015790 37.860 243 146 4 30 271 112 350 1.69e-53 178
MsG0580024443.01.T01 MTR_3g070860 37.449 243 146 5 30 271 100 337 4.33e-51 172
MsG0580024443.01.T01 MTR_7g068650 36.214 243 150 4 30 271 104 342 7.79e-50 169
MsG0580024443.01.T01 MTR_7g062570 32.342 269 175 4 23 290 93 355 9.75e-49 166
MsG0580024443.01.T01 MTR_5g082750 37.037 243 147 5 30 271 99 336 1.71e-48 165
MsG0580024443.01.T01 MTR_7g062580 33.203 256 164 4 36 290 106 355 1.11e-47 163
MsG0580024443.01.T01 MTR_3g063180 32.932 249 157 4 30 272 89 333 1.88e-47 162
MsG0580024443.01.T01 MTR_8g074050 36.404 228 141 3 39 265 106 330 9.03e-47 160
MsG0580024443.01.T01 MTR_3g117420 34.440 241 152 4 26 265 95 330 1.44e-46 160
MsG0580024443.01.T01 MTR_8g074070 36.404 228 141 3 39 265 106 330 2.84e-46 159
MsG0580024443.01.T01 MTR_7g062550 32.692 260 168 4 23 281 98 351 7.75e-46 159
MsG0580024443.01.T01 MTR_7g062600 32.210 267 173 5 23 287 89 349 3.77e-45 156
MsG0580024443.01.T01 MTR_2g437380 32.422 256 165 4 26 279 1 250 3.25e-44 151
MsG0580024443.01.T01 MTR_4g116010 31.250 256 168 5 26 279 89 338 3.40e-44 154
MsG0580024443.01.T01 MTR_2g437380 32.422 256 165 4 26 279 95 344 3.01e-43 151
MsG0580024443.01.T01 MTR_7g063730 31.641 256 168 4 36 290 115 364 1.63e-42 150
MsG0580024443.01.T01 MTR_3g026150 31.783 258 169 4 26 282 101 352 1.79e-42 149
MsG0580024443.01.T01 MTR_5g055820 34.252 254 159 5 28 279 90 337 1.92e-42 149
MsG0580024443.01.T01 MTR_3g026150 31.765 255 167 4 33 286 5 253 1.97e-42 146
MsG0580024443.01.T01 MTR_5g055900 32.911 237 152 4 28 263 90 320 8.23e-42 147
MsG0580024443.01.T01 MTR_3g117485 33.462 260 149 7 6 263 19 256 1.41e-41 145
MsG0580024443.01.T01 MTR_5g055680 32.941 255 160 5 28 279 90 336 3.21e-41 146
MsG0580024443.01.T01 MTR_8g074070 35.965 228 123 5 39 265 106 311 4.33e-41 145
MsG0580024443.01.T01 MTR_3g117485 33.462 260 149 7 6 263 91 328 6.70e-41 145
MsG0580024443.01.T01 MTR_5g032870 31.746 252 168 3 22 272 78 326 9.17e-41 144
MsG0580024443.01.T01 MTR_8g064200 35.526 228 138 4 39 263 105 326 8.55e-40 142
MsG0580024443.01.T01 MTR_8g064200 35.526 228 138 4 39 263 110 331 1.10e-39 142
MsG0580024443.01.T01 MTR_5g048850 34.177 237 149 4 28 263 90 320 1.11e-39 142
MsG0580024443.01.T01 MTR_3g092890 44.242 165 86 3 92 253 141 302 5.55e-39 139
MsG0580024443.01.T01 MTR_7g102820 34.717 265 149 9 36 286 119 373 6.99e-39 140
MsG0580024443.01.T01 MTR_5g048470 33.205 259 156 5 39 286 106 358 7.13e-39 140
MsG0580024443.01.T01 MTR_5g048550 32.000 250 163 4 33 281 95 338 2.63e-38 138
MsG0580024443.01.T01 MTR_3g091350 40.237 169 99 2 92 260 165 331 3.41e-38 138
MsG0580024443.01.T01 MTR_0009s0050 33.333 228 145 4 51 277 13 234 3.78e-38 135
MsG0580024443.01.T01 MTR_5g032880 39.205 176 104 2 97 272 146 318 4.35e-38 142
MsG0580024443.01.T01 MTR_5g032880 36.923 195 116 3 99 289 494 685 4.75e-37 139
MsG0580024443.01.T01 MTR_0009s0050 33.333 228 145 4 51 277 13 234 4.77e-38 135
MsG0580024443.01.T01 MTR_0056s0160 35.407 209 130 3 56 263 1 205 4.98e-38 134
MsG0580024443.01.T01 MTR_8g024120 41.279 172 97 2 92 263 148 315 7.14e-38 137
MsG0580024443.01.T01 MTR_5g055690 32.759 232 151 3 51 281 112 339 7.96e-38 137
MsG0580024443.01.T01 MTR_7g045650 33.990 203 128 3 23 224 98 295 4.34e-37 134
MsG0580024443.01.T01 MTR_0009s0050 33.333 228 145 4 51 277 111 332 4.41e-37 135
MsG0580024443.01.T01 MTR_0009s0050 33.333 228 145 4 51 277 111 332 4.63e-37 135
MsG0580024443.01.T01 MTR_5g048570 31.474 251 163 5 28 277 88 330 4.64e-37 135
MsG0580024443.01.T01 MTR_8g075890 35.833 240 147 5 39 276 94 328 7.37e-37 135
MsG0580024443.01.T01 MTR_0328s0030 32.806 253 163 4 28 279 88 334 1.63e-36 133
MsG0580024443.01.T01 MTR_1g033810 35.683 227 139 4 39 263 101 322 2.56e-36 133
MsG0580024443.01.T01 MTR_2g072910 34.071 226 144 3 39 263 105 326 4.17e-36 132
MsG0580024443.01.T01 MTR_3g091360 39.645 169 100 2 92 260 158 324 4.27e-36 132
MsG0580024443.01.T01 MTR_8g075830 35.833 240 147 5 39 276 94 328 7.01e-36 132
MsG0580024443.01.T01 MTR_3g058610 33.333 258 156 6 26 280 83 327 3.72e-35 130
MsG0580024443.01.T01 MTR_5g055800 31.225 253 166 4 28 279 90 335 5.98e-35 129
MsG0580024443.01.T01 MTR_2g072890 30.620 258 166 4 39 287 106 359 6.26e-35 129
MsG0580024443.01.T01 MTR_1g102070 32.593 270 155 8 26 280 104 361 7.73e-35 129
MsG0580024443.01.T01 MTR_0009s0480 32.489 237 153 4 28 263 89 319 1.34e-34 128
MsG0580024443.01.T01 MTR_3g088565 30.833 240 152 6 39 272 56 287 1.86e-34 127
MsG0580024443.01.T01 MTR_2g025120 33.173 208 135 3 60 266 73 277 1.93e-34 127
MsG0580024443.01.T01 MTR_4g087100 37.297 185 110 3 93 275 150 330 2.08e-34 128
MsG0580024443.01.T01 MTR_5g022020 33.333 243 149 7 39 276 94 328 2.51e-34 128
MsG0580024443.01.T01 MTR_1g081840 32.099 243 140 6 54 281 124 356 4.56e-34 127
MsG0580024443.01.T01 MTR_1g070120 31.088 193 125 3 91 280 144 331 4.62e-34 127
MsG0580024443.01.T01 MTR_1g070135 32.124 193 123 3 91 280 144 331 5.24e-34 127
MsG0580024443.01.T01 MTR_5g065010 38.043 184 107 4 93 273 145 324 7.01e-34 126
MsG0580024443.01.T01 MTR_1g062110 30.488 246 165 4 26 268 108 350 2.64e-33 125
MsG0580024443.01.T01 MTR_1g034140 39.773 176 100 3 92 265 141 312 2.70e-33 125
MsG0580024443.01.T01 MTR_1g034120 33.880 183 115 3 92 272 151 329 3.55e-33 124
MsG0580024443.01.T01 MTR_5g048740 33.058 242 158 3 39 279 97 335 4.59e-33 124
MsG0580024443.01.T01 MTR_5g085330 32.579 221 142 4 56 272 70 287 6.32e-33 123
MsG0580024443.01.T01 MTR_4g093840 30.901 233 151 5 34 263 113 338 7.79e-33 124
MsG0580024443.01.T01 MTR_3g096500 31.076 251 160 5 39 280 122 368 8.22e-33 124
MsG0580024443.01.T01 MTR_2g069190 34.335 233 140 6 43 272 130 352 9.91e-33 124
MsG0580024443.01.T01 MTR_4g087110 35.165 182 112 3 93 272 150 327 1.72e-32 123
MsG0580024443.01.T01 MTR_3g083370 33.171 205 132 4 70 273 83 283 3.33e-32 121
MsG0580024443.01.T01 MTR_4g115990 33.508 191 123 3 71 260 111 298 3.40e-32 121
MsG0580024443.01.T01 MTR_6g464620 34.034 238 140 7 54 280 135 366 3.54e-32 122
MsG0580024443.01.T01 MTR_4g087140 34.518 197 121 4 93 287 150 340 4.31e-32 122
MsG0580024443.01.T01 MTR_4g087120 34.518 197 120 4 93 284 150 342 6.89e-32 121
MsG0580024443.01.T01 MTR_8g033380 32.016 253 156 6 39 281 110 356 7.15e-32 121
MsG0580024443.01.T01 MTR_1g034060 33.333 183 116 3 92 272 151 329 8.71e-32 121
MsG0580024443.01.T01 MTR_4g087090 36.782 174 104 3 92 263 148 317 1.04e-31 120
MsG0580024443.01.T01 MTR_1g070085 32.524 206 125 5 91 286 65 266 2.58e-31 117
MsG0580024443.01.T01 MTR_1g070100 32.524 206 125 5 91 286 61 262 2.59e-31 117
MsG0580024443.01.T01 MTR_1g070085 32.524 206 125 5 91 286 143 344 7.59e-31 118
MsG0580024443.01.T01 MTR_1g070085 32.524 206 125 5 91 286 143 344 7.59e-31 118
MsG0580024443.01.T01 MTR_8g008930 33.047 233 143 6 42 271 123 345 9.65e-31 118
MsG0580024443.01.T01 MTR_3g088745 33.195 241 146 8 51 281 104 339 9.98e-31 118
MsG0580024443.01.T01 MTR_0009s0050 41.429 140 78 3 139 277 16 152 2.62e-30 112
MsG0580024443.01.T01 MTR_2g069210 30.172 232 151 4 43 272 126 348 2.81e-30 117
MsG0580024443.01.T01 MTR_3g026150 32.086 187 121 3 26 211 101 282 2.99e-30 115
MsG0580024443.01.T01 MTR_7g081710 32.547 212 134 6 59 268 124 328 3.78e-30 116
MsG0580024443.01.T01 MTR_8g009160 32.407 216 137 5 59 272 137 345 1.06e-29 115
MsG0580024443.01.T01 MTR_8g009090 32.035 231 144 6 43 270 123 343 3.77e-29 114
MsG0580024443.01.T01 MTR_7g105070 30.422 332 170 10 1 275 22 349 6.17e-29 113
MsG0580024443.01.T01 MTR_8g469400 33.880 183 113 3 99 276 166 345 7.19e-29 113
MsG0580024443.01.T01 MTR_2g069090 32.340 235 147 6 43 274 130 355 9.54e-29 113
MsG0580024443.01.T01 MTR_7g029655 34.434 212 116 7 59 263 147 342 1.12e-28 113
MsG0580024443.01.T01 MTR_1g070080 32.704 159 103 1 89 247 142 296 1.72e-28 112
MsG0580024443.01.T01 MTR_2g102570 31.020 245 162 5 32 272 93 334 1.77e-28 112
MsG0580024443.01.T01 MTR_8g028435 31.897 232 147 6 43 272 123 345 3.16e-28 111
MsG0580024443.01.T01 MTR_2g069010 31.016 187 120 3 96 276 178 361 4.50e-28 111
MsG0580024443.01.T01 MTR_4g087130 33.891 239 140 7 59 283 106 340 6.70e-28 110
MsG0580024443.01.T01 MTR_1g048940 32.240 183 115 5 89 268 150 326 1.08e-27 110
MsG0580024443.01.T01 MTR_8g041620 34.104 173 108 3 94 263 177 346 1.11e-27 110
MsG0580024443.01.T01 MTR_4g117880 31.481 216 138 6 59 271 137 345 1.68e-27 109
MsG0580024443.01.T01 MTR_2g069060 35.196 179 100 3 82 260 157 319 2.06e-27 109
MsG0580024443.01.T01 MTR_6g092620 35.233 193 112 6 70 255 81 267 2.08e-27 108
MsG0580024443.01.T01 MTR_0009s0400 43.590 117 64 2 148 263 1 116 3.09e-27 103
MsG0580024443.01.T01 MTR_8g009080 34.946 186 114 4 96 278 203 384 4.21e-27 109
MsG0580024443.01.T01 MTR_2g069020 34.783 184 114 4 96 276 176 356 6.84e-27 108
MsG0580024443.01.T01 MTR_8g009170 31.019 216 141 4 59 272 137 346 6.88e-27 108
MsG0580024443.01.T01 MTR_8g009110 31.556 225 144 7 51 272 129 346 7.14e-27 108
MsG0580024443.01.T01 MTR_2g069020 34.783 184 114 4 96 276 176 356 1.09e-26 108
MsG0580024443.01.T01 MTR_1g093140 32.022 178 114 3 101 274 187 361 1.59e-26 107
MsG0580024443.01.T01 MTR_1g093120 33.523 176 112 2 101 274 181 353 2.45e-26 106
MsG0580024443.01.T01 MTR_8g062600 31.720 186 119 3 96 276 176 358 3.21e-26 106
MsG0580024443.01.T01 MTR_2g068840 32.411 253 148 9 22 263 93 333 3.71e-26 106
MsG0580024443.01.T01 MTR_8g093930 32.275 189 118 4 102 289 170 349 4.98e-26 105
MsG0580024443.01.T01 MTR_5g048850 30.481 187 124 3 28 213 90 271 6.83e-26 103
MsG0580024443.01.T01 MTR_2g068960 31.016 187 120 3 96 276 172 355 7.22e-26 105
MsG0580024443.01.T01 MTR_2g068950 30.481 187 121 3 96 276 172 355 8.55e-26 105
MsG0580024443.01.T01 MTR_7g062560 26.667 255 170 6 26 279 103 341 1.07e-25 104
MsG0580024443.01.T01 MTR_4g024660 30.526 190 124 3 92 276 172 358 1.09e-25 105
MsG0580024443.01.T01 MTR_1g011580 29.237 236 157 5 39 272 110 337 1.44e-25 104
MsG0580024443.01.T01 MTR_1g032250 36.810 163 86 4 124 284 217 364 2.18e-25 104
MsG0580024443.01.T01 MTR_3g045230 36.943 157 89 5 133 285 197 347 2.74e-25 103
MsG0580024443.01.T01 MTR_1g032140 37.324 142 75 2 123 263 209 337 2.95e-25 103
MsG0580024443.01.T01 MTR_8g041600 33.152 184 111 4 83 263 172 346 3.32e-25 103
MsG0580024443.01.T01 MTR_6g015950 31.818 198 123 5 83 279 135 321 3.56e-25 103
MsG0580024443.01.T01 MTR_8g009180 31.441 229 138 6 59 272 51 275 4.04e-25 102
MsG0580024443.01.T01 MTR_2g068800 33.333 180 102 5 59 229 111 281 9.36e-25 100
MsG0580024443.01.T01 MTR_7g056353 27.338 278 185 6 4 276 67 332 1.33e-24 103
MsG0580024443.01.T01 MTR_3g043900 36.943 157 89 5 133 285 196 346 1.41e-24 101
MsG0580024443.01.T01 MTR_1g032220 34.568 162 91 3 124 284 217 364 5.19e-24 100
MsG0580024443.01.T01 MTR_7g016090 30.556 180 119 3 92 270 143 317 5.68e-24 99.8
MsG0580024443.01.T01 MTR_7g016090 30.556 180 119 3 92 270 145 319 5.78e-24 99.8
MsG0580024443.01.T01 MTR_8g063070 30.000 200 119 4 82 276 175 358 6.48e-24 100
MsG0580024443.01.T01 MTR_2g069300 29.412 221 138 7 59 272 130 339 7.39e-24 99.8
MsG0580024443.01.T01 MTR_1g043810 32.787 183 115 5 96 274 163 341 8.15e-24 99.8
MsG0580024443.01.T01 MTR_4g132770 41.071 112 64 2 147 257 28 138 8.41e-24 95.1
MsG0580024443.01.T01 MTR_1g093110 28.185 259 169 7 22 274 110 357 9.39e-24 99.8
MsG0580024443.01.T01 MTR_0032s0040 33.962 212 115 8 59 263 152 345 1.42e-23 99.4
MsG0580024443.01.T01 MTR_1g043775 33.516 182 113 5 96 273 163 340 1.70e-23 98.6
MsG0580024443.01.T01 MTR_7g078010 36.702 188 108 4 94 273 174 358 1.85e-23 99.0
MsG0580024443.01.T01 MTR_8g093980 35.366 164 101 3 102 264 181 340 2.41e-23 98.6
MsG0580024443.01.T01 MTR_1g070135 33.058 121 77 1 91 211 144 260 3.38e-23 96.7
MsG0580024443.01.T01 MTR_2g083030 29.464 224 141 4 53 276 109 315 2.31e-22 95.1
MsG0580024443.01.T01 MTR_7g102720 30.000 230 147 8 60 285 109 328 2.48e-22 95.1
MsG0580024443.01.T01 MTR_2g019370 28.444 225 147 6 58 271 92 313 2.56e-22 95.1
MsG0580024443.01.T01 MTR_7g056347 31.148 183 115 4 101 275 181 360 4.20e-22 95.1
MsG0580024443.01.T01 MTR_1g070185 31.282 195 124 4 88 278 164 352 4.58e-22 94.7
MsG0580024443.01.T01 MTR_5g055690 29.012 162 111 2 51 211 112 270 6.86e-22 92.8
MsG0580024443.01.T01 MTR_2g025120 31.847 157 104 2 56 211 69 223 7.93e-22 91.7
MsG0580024443.01.T01 MTR_1g043760 31.111 180 117 4 96 272 162 337 1.05e-21 93.6
MsG0580024443.01.T01 MTR_0009s0480 28.108 185 127 3 28 211 89 268 5.47e-21 90.5
MsG0580024443.01.T01 MTR_1g027290 32.370 173 113 4 100 270 147 317 1.15e-20 90.5
MsG0580024443.01.T01 MTR_2g072910 29.944 177 120 2 39 214 105 278 1.61e-20 89.4
MsG0580024443.01.T01 MTR_7g056393 36.646 161 94 3 105 260 185 342 2.34e-20 90.1
MsG0580024443.01.T01 MTR_3g083370 33.566 143 92 2 70 211 83 223 2.92e-20 87.4
MsG0580024443.01.T01 MTR_1g062110 26.984 189 133 3 26 211 108 294 3.03e-20 89.4
MsG0580024443.01.T01 MTR_7g016080 27.615 239 159 4 23 260 77 302 6.57e-20 88.2
MsG0580024443.01.T01 MTR_8g006930 33.520 179 111 3 101 274 181 356 6.96e-20 89.0
MsG0580024443.01.T01 MTR_4g123020 29.885 174 116 3 103 271 129 301 7.25e-20 88.2
MsG0580024443.01.T01 MTR_1g043770 32.164 171 109 4 96 263 161 327 2.20e-19 87.4
MsG0580024443.01.T01 MTR_5g005570 30.366 191 114 4 100 290 148 319 2.34e-19 87.0
MsG0580024443.01.T01 MTR_2g070870 25.410 244 167 7 22 259 60 294 2.81e-19 86.7
MsG0580024443.01.T01 MTR_2g083000 32.168 143 92 3 106 247 150 288 8.49e-19 85.1
MsG0580024443.01.T01 MTR_8g009120 34.921 126 80 1 149 272 209 334 2.69e-18 84.0
MsG0580024443.01.T01 MTR_4g074130 31.737 167 102 3 113 274 158 317 3.57e-18 83.6
MsG0580024443.01.T01 MTR_7g451860 29.126 206 137 3 42 247 103 299 1.58e-17 81.6
MsG0580024443.01.T01 MTR_7g047670 29.126 206 137 3 42 247 103 299 1.58e-17 81.6
MsG0580024443.01.T01 MTR_2g069060 34.615 130 69 3 82 211 135 248 2.04e-17 80.1
MsG0580024443.01.T01 MTR_4g119410 31.844 179 114 3 101 274 181 356 2.64e-17 81.6
MsG0580024443.01.T01 MTR_1g086550 27.899 276 157 11 22 271 54 313 6.16e-17 80.1
MsG0580024443.01.T01 MTR_1g070110 29.341 167 84 3 91 257 68 200 6.39e-17 78.6
MsG0580024443.01.T01 MTR_8g009150 26.383 235 141 7 43 274 123 328 8.08e-17 79.7
MsG0580024443.01.T01 MTR_8g009080 37.391 115 69 2 96 210 203 314 2.93e-16 78.2
MsG0580024443.01.T01 MTR_8g041600 33.333 129 77 3 83 211 172 291 2.98e-16 77.8
MsG0580024443.01.T01 MTR_3g040410 25.446 224 156 5 34 257 60 272 4.32e-16 77.4
MsG0580024443.01.T01 MTR_8g461330 26.606 218 137 7 58 259 91 301 7.55e-16 77.0
MsG0580024443.01.T01 MTR_8g009080 38.393 112 66 2 96 207 203 311 8.27e-16 77.0
MsG0580024443.01.T01 MTR_4g021380 26.000 200 136 5 91 284 118 311 9.29e-16 76.6
MsG0580024443.01.T01 MTR_4g011720 28.205 195 134 4 91 284 116 305 1.05e-15 76.3
MsG0580024443.01.T01 MTR_4g011690 27.723 202 139 5 85 284 110 306 2.18e-15 75.5
MsG0580024443.01.T01 MTR_2g033270 27.111 225 150 4 54 271 81 298 5.26e-15 74.3
MsG0580024443.01.T01 MTR_8g009170 30.263 152 100 3 59 210 137 282 1.34e-14 72.8
MsG0580024443.01.T01 MTR_1g043840 26.842 190 123 4 96 272 38 224 1.42e-14 73.2
MsG0580024443.01.T01 MTR_4g096840 24.645 211 147 6 58 259 93 300 2.81e-14 72.4
MsG0580024443.01.T01 MTR_4g100600 29.762 168 107 6 116 276 141 304 3.55e-14 72.0
MsG0580024443.01.T01 MTR_4g100590 34.426 122 73 3 160 276 133 252 7.73e-14 70.5
MsG0580024443.01.T01 MTR_4g100590 34.426 122 73 3 160 276 180 299 1.38e-13 70.1
MsG0580024443.01.T01 MTR_3g464530 31.081 148 87 5 105 247 151 288 2.07e-13 69.7
MsG0580024443.01.T01 MTR_3g108520 28.910 211 130 9 88 282 102 308 2.33e-13 69.7
MsG0580024443.01.T01 MTR_1g043775 33.043 115 74 2 96 210 163 274 2.44e-13 69.3
MsG0580024443.01.T01 MTR_1g043810 32.174 115 75 2 96 210 163 274 3.76e-13 68.9
MsG0580024443.01.T01 MTR_1g032240 34.454 119 55 3 124 241 50 146 5.23e-13 66.2
MsG0580024443.01.T01 MTR_7g090520 27.461 193 131 5 91 281 117 302 9.66e-13 67.8
MsG0580024443.01.T01 MTR_8g030880 25.628 199 139 5 91 285 110 303 3.33e-12 66.2
MsG0580024443.01.T01 MTR_7g078010 36.441 118 72 2 94 211 174 288 3.45e-12 65.9
MsG0580024443.01.T01 MTR_7g077670 25.758 198 139 5 91 285 111 303 4.79e-12 65.9
MsG0580024443.01.T01 MTR_4g021360 23.590 195 143 5 91 282 115 306 1.31e-11 64.3
MsG0580024443.01.T01 MTR_1g043770 32.174 115 75 2 96 210 161 272 1.83e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024443.01.T01 AT4G22880 64.535 344 59 3 3 283 6 349 2.01e-151 428
MsG0580024443.01.T01 AT4G22880 64.535 344 59 3 3 283 6 349 2.01e-151 428
MsG0580024443.01.T01 AT4G22880 64.535 344 59 3 3 283 6 349 2.01e-151 428
MsG0580024443.01.T01 AT5G08640 42.578 256 143 3 22 276 78 330 7.56e-67 212
MsG0580024443.01.T01 AT5G08640 42.578 256 143 3 22 276 78 330 7.56e-67 212
MsG0580024443.01.T01 AT4G22870 85.714 105 15 0 179 283 1 105 3.41e-64 197
MsG0580024443.01.T01 AT4G22870 84.848 99 15 0 185 283 48 146 2.13e-59 186
MsG0580024443.01.T01 AT5G05600 38.095 273 162 6 1 271 82 349 8.22e-55 182
MsG0580024443.01.T01 AT3G11180 37.786 262 157 5 11 271 122 378 1.26e-54 182
MsG0580024443.01.T01 AT3G11180 37.786 262 157 5 11 271 122 378 1.50e-54 182
MsG0580024443.01.T01 AT1G49390 37.603 242 147 3 39 279 21 259 2.41e-51 170
MsG0580024443.01.T01 AT1G49390 37.603 242 147 3 39 279 100 338 2.49e-50 169
MsG0580024443.01.T01 AT5G63590 41.102 236 134 4 39 271 64 297 3.74e-50 168
MsG0580024443.01.T01 AT2G38240 36.820 239 147 3 34 271 96 331 2.93e-49 167
MsG0580024443.01.T01 AT4G16330 34.568 243 148 4 46 286 19 252 1.21e-47 160
MsG0580024443.01.T01 AT4G16330 34.568 243 148 4 46 286 125 358 1.35e-46 160
MsG0580024443.01.T01 AT5G20400 38.559 236 139 4 26 260 89 319 7.89e-46 158
MsG0580024443.01.T01 AT5G54000 36.441 236 144 4 26 260 10 240 3.24e-45 154
MsG0580024443.01.T01 AT3G21420 33.725 255 160 5 36 287 110 358 5.01e-45 156
MsG0580024443.01.T01 AT3G55970 35.391 243 151 5 31 271 103 341 7.97e-45 155
MsG0580024443.01.T01 AT5G54000 36.441 236 144 4 26 260 90 320 2.79e-44 154
MsG0580024443.01.T01 AT4G10490 41.304 184 100 4 92 272 148 326 4.34e-44 153
MsG0580024443.01.T01 AT5G20550 36.735 245 148 5 23 265 86 325 1.01e-43 152
MsG0580024443.01.T01 AT4G10500 35.616 219 132 5 42 259 103 313 7.87e-41 145
MsG0580024443.01.T01 AT4G25310 32.800 250 162 4 25 273 91 335 1.50e-39 141
MsG0580024443.01.T01 AT3G51240 35.391 243 148 5 39 278 9 245 9.80e-39 137
MsG0580024443.01.T01 AT1G78550 32.218 239 155 4 26 263 18 250 4.92e-38 135
MsG0580024443.01.T01 AT5G63600 33.019 212 140 2 65 276 105 314 6.30e-38 137
MsG0580024443.01.T01 AT3G51240 35.391 243 148 5 39 278 93 329 7.65e-38 137
MsG0580024443.01.T01 AT2G36690 33.333 249 156 6 28 272 105 347 9.84e-38 137
MsG0580024443.01.T01 AT2G36690 33.333 249 156 6 28 272 105 347 9.84e-38 137
MsG0580024443.01.T01 AT1G78550 32.218 239 155 4 26 263 96 328 2.35e-37 136
MsG0580024443.01.T01 AT5G63595 34.764 233 123 7 15 247 59 262 2.60e-37 134
MsG0580024443.01.T01 AT1G17020 31.579 247 164 4 26 271 96 338 3.18e-37 135
MsG0580024443.01.T01 AT5G07200 39.556 225 114 7 45 256 120 335 3.35e-37 136
MsG0580024443.01.T01 AT5G63600 32.864 213 140 3 65 276 105 315 5.67e-37 134
MsG0580024443.01.T01 AT5G43935 29.389 262 154 5 22 278 54 289 1.37e-36 132
MsG0580024443.01.T01 AT1G44090 36.066 244 139 6 37 270 117 353 1.77e-36 134
MsG0580024443.01.T01 AT5G24530 38.251 183 107 3 92 271 141 320 3.94e-36 132
MsG0580024443.01.T01 AT1G55290 31.818 264 170 6 24 285 99 354 4.26e-36 132
MsG0580024443.01.T01 AT1G17010 30.962 239 159 4 26 263 97 330 2.08e-35 130
MsG0580024443.01.T01 AT1G15550 32.780 241 155 5 39 275 104 341 3.04e-35 130
MsG0580024443.01.T01 AT3G13610 30.827 266 174 6 22 285 97 354 3.57e-35 130
MsG0580024443.01.T01 AT4G25300 31.325 249 165 4 26 273 95 338 6.53e-35 129
MsG0580024443.01.T01 AT5G05600 34.272 213 134 5 1 211 82 290 7.17e-35 127
MsG0580024443.01.T01 AT1G60980 35.111 225 130 6 45 258 119 338 1.97e-33 126
MsG0580024443.01.T01 AT4G25420 34.241 257 144 7 39 280 116 362 2.46e-33 125
MsG0580024443.01.T01 AT5G51810 33.613 238 141 6 54 280 129 360 4.29e-33 125
MsG0580024443.01.T01 AT3G60290 33.624 229 142 7 59 285 127 347 5.16e-33 124
MsG0580024443.01.T01 AT3G19000 39.344 183 102 4 83 260 139 317 1.14e-32 123
MsG0580024443.01.T01 AT1G12010 33.333 204 130 4 70 272 86 284 1.22e-32 122
MsG0580024443.01.T01 AT1G77330 36.757 185 106 4 96 272 105 286 6.91e-32 120
MsG0580024443.01.T01 AT1G80330 31.034 261 171 4 26 279 85 343 3.76e-31 119
MsG0580024443.01.T01 AT2G44800 36.500 200 118 6 59 256 127 319 4.78e-31 119
MsG0580024443.01.T01 AT1G62380 31.405 242 152 7 40 272 48 284 7.37e-31 118
MsG0580024443.01.T01 AT1G80340 32.171 258 166 6 22 275 82 334 8.29e-31 118
MsG0580024443.01.T01 AT1G05010 34.392 189 119 4 70 256 83 268 1.21e-30 117
MsG0580024443.01.T01 AT3G19010 37.356 174 103 3 92 263 146 315 1.21e-30 118
MsG0580024443.01.T01 AT3G19010 37.356 174 103 3 92 263 146 315 1.21e-30 118
MsG0580024443.01.T01 AT5G07480 37.566 189 106 6 87 268 38 221 1.69e-30 115
MsG0580024443.01.T01 AT5G07480 37.566 189 106 6 87 268 147 330 7.26e-30 116
MsG0580024443.01.T01 AT3G55970 33.333 183 117 4 31 211 103 282 9.16e-30 114
MsG0580024443.01.T01 AT4G21690 31.004 229 145 6 26 244 83 308 1.38e-28 112
MsG0580024443.01.T01 AT2G19590 32.828 198 122 5 63 255 81 272 2.45e-28 111
MsG0580024443.01.T01 AT2G19590 32.828 198 122 5 63 255 66 257 2.50e-28 110
MsG0580024443.01.T01 AT1G04380 30.534 262 152 9 7 263 81 317 9.25e-28 110
MsG0580024443.01.T01 AT1G03410 36.047 172 102 4 96 263 167 334 9.43e-28 110
MsG0580024443.01.T01 AT5G59530 34.595 185 112 4 93 271 163 344 1.12e-27 110
MsG0580024443.01.T01 AT2G30830 31.452 248 147 8 34 278 118 345 1.24e-27 110
MsG0580024443.01.T01 AT5G43450 35.503 169 104 3 105 271 177 342 1.39e-27 110
MsG0580024443.01.T01 AT1G03410 36.047 172 102 4 96 263 204 371 2.06e-27 110
MsG0580024443.01.T01 AT5G43440 31.651 218 137 7 58 271 136 345 2.45e-27 109
MsG0580024443.01.T01 AT2G30840 37.778 180 107 4 101 278 173 349 5.73e-27 108
MsG0580024443.01.T01 AT4G25300 33.155 187 120 4 99 284 72 254 6.87e-27 106
MsG0580024443.01.T01 AT3G12900 31.120 241 154 8 47 285 119 349 8.01e-27 107
MsG0580024443.01.T01 AT1G06620 31.799 239 140 7 47 278 128 350 1.01e-26 107
MsG0580024443.01.T01 AT1G03400 32.948 173 106 3 96 263 157 324 1.45e-26 107
MsG0580024443.01.T01 AT1G04350 36.420 162 97 4 105 263 174 332 1.55e-26 107
MsG0580024443.01.T01 AT5G59540 35.088 171 104 4 96 263 172 338 1.71e-26 107
MsG0580024443.01.T01 AT1G06640 35.556 180 102 6 93 263 167 341 8.01e-26 105
MsG0580024443.01.T01 AT3G19000 36.620 142 82 3 83 219 139 277 1.71e-25 102
MsG0580024443.01.T01 AT1G06650 34.392 189 110 6 85 263 157 341 2.45e-24 101
MsG0580024443.01.T01 AT3G61400 30.769 234 146 7 43 270 127 350 2.72e-24 101
MsG0580024443.01.T01 AT4G25310 28.000 250 146 4 25 273 91 307 1.70e-23 98.2
MsG0580024443.01.T01 AT5G63580 37.714 175 104 4 39 211 69 240 3.27e-23 95.9
MsG0580024443.01.T01 AT5G63580 38.150 173 102 4 39 209 69 238 3.86e-23 95.9
MsG0580024443.01.T01 AT1G06645 33.133 166 105 3 101 263 189 351 4.72e-23 97.8
MsG0580024443.01.T01 AT2G30840 37.222 180 102 5 101 278 173 343 6.78e-23 97.1
MsG0580024443.01.T01 AT5G12270 34.694 147 89 3 144 284 207 352 2.26e-22 95.9
MsG0580024443.01.T01 AT2G25450 34.946 186 107 6 101 279 169 347 2.39e-22 95.5
MsG0580024443.01.T01 AT4G21200 33.333 183 110 5 98 276 147 321 5.27e-22 94.4
MsG0580024443.01.T01 AT1G03400 27.885 208 112 4 96 270 157 359 2.09e-21 93.2
MsG0580024443.01.T01 AT3G19010 32.184 174 82 3 92 263 146 285 3.81e-21 91.7
MsG0580024443.01.T01 AT2G34555 30.909 220 143 7 58 271 91 307 7.22e-21 91.3
MsG0580024443.01.T01 AT1G30040 27.727 220 151 5 58 271 95 312 8.22e-21 91.3
MsG0580024443.01.T01 AT3G19010 35.772 123 74 2 92 212 146 265 5.82e-20 88.2
MsG0580024443.01.T01 AT5G51810 32.353 170 101 4 54 214 129 293 4.94e-19 85.5
MsG0580024443.01.T01 AT4G25420 32.796 186 103 5 39 211 116 292 8.80e-19 84.7
MsG0580024443.01.T01 AT3G49630 32.292 192 118 7 92 276 62 248 4.61e-18 82.0
MsG0580024443.01.T01 AT1G04380 30.000 210 119 8 7 213 81 265 5.97e-18 82.0
MsG0580024443.01.T01 AT1G06620 33.133 166 98 4 47 210 128 282 9.73e-18 81.6
MsG0580024443.01.T01 AT3G49630 32.292 192 118 7 92 276 135 321 1.05e-17 82.4
MsG0580024443.01.T01 AT3G49630 32.292 192 118 7 92 276 131 317 1.13e-17 82.0
MsG0580024443.01.T01 AT3G50210 30.964 197 120 7 92 276 52 244 2.60e-17 80.1
MsG0580024443.01.T01 AT3G49620 32.461 191 121 6 92 277 160 347 3.57e-17 80.9
MsG0580024443.01.T01 AT5G43450 39.623 106 61 2 105 210 177 279 4.47e-17 79.7
MsG0580024443.01.T01 AT1G78440 25.306 245 164 8 39 271 65 302 4.53e-17 80.5
MsG0580024443.01.T01 AT5G43440 37.391 115 69 2 96 210 171 282 4.54e-17 80.1
MsG0580024443.01.T01 AT3G50210 30.964 197 120 7 92 276 134 326 5.94e-17 80.1
MsG0580024443.01.T01 AT3G50210 30.964 197 120 7 92 276 134 326 5.94e-17 80.1
MsG0580024443.01.T01 AT3G50210 30.964 197 120 7 92 276 134 326 5.94e-17 80.1
MsG0580024443.01.T01 AT1G02400 28.745 247 148 11 45 271 71 309 6.50e-17 80.1
MsG0580024443.01.T01 AT1G06640 36.154 130 74 3 93 217 167 292 1.96e-16 78.6
MsG0580024443.01.T01 AT4G23340 31.551 187 117 7 105 285 3 184 4.08e-16 75.9
MsG0580024443.01.T01 AT1G06640 36.290 124 70 3 93 211 167 286 5.12e-16 77.0
MsG0580024443.01.T01 AT5G59540 34.483 116 73 2 96 211 172 284 8.51e-16 76.3
MsG0580024443.01.T01 AT4G23340 31.414 191 120 7 101 285 117 302 8.88e-16 76.6
MsG0580024443.01.T01 AT3G61400 30.814 172 106 5 43 211 127 288 2.97e-15 74.7
MsG0580024443.01.T01 AT2G30840 40.909 110 62 2 101 210 173 279 3.95e-15 74.7
MsG0580024443.01.T01 AT1G06650 34.586 133 78 3 85 211 157 286 4.17e-15 74.7
MsG0580024443.01.T01 AT1G52820 29.545 176 118 4 91 265 119 289 2.22e-14 72.8
MsG0580024443.01.T01 AT3G47190 31.081 148 89 5 102 244 152 291 8.41e-14 70.9
MsG0580024443.01.T01 AT4G16765 26.882 186 124 5 99 276 59 240 2.28e-13 68.9
MsG0580024443.01.T01 AT4G16765 26.882 186 124 5 99 276 59 240 2.28e-13 68.9
MsG0580024443.01.T01 AT4G16765 26.882 186 124 5 99 276 59 240 2.28e-13 68.9
MsG0580024443.01.T01 AT1G50960 30.000 140 95 3 102 241 155 291 8.99e-13 68.2
MsG0580024443.01.T01 AT3G46500 26.786 224 146 7 55 264 8 227 1.46e-12 66.6
MsG0580024443.01.T01 AT3G46500 26.786 224 146 7 55 264 8 227 1.46e-12 66.6
MsG0580024443.01.T01 AT3G46500 26.786 224 146 7 55 264 82 301 2.64e-12 66.6
MsG0580024443.01.T01 AT1G47990 32.520 123 69 4 146 255 161 282 2.73e-12 66.6
MsG0580024443.01.T01 AT4G03070 33.333 117 76 2 158 273 187 302 4.19e-12 65.9
MsG0580024443.01.T01 AT4G03050 37.273 110 66 3 161 268 274 382 4.63e-12 66.2
MsG0580024443.01.T01 AT4G03050 37.273 110 66 3 161 268 274 382 4.63e-12 66.2

Find 61 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTCTCACATATTCTTT+TGG 0.172725 5:-5059473 None:intergenic
AGCTCTGGCTGAGGGCAAAT+TGG 0.266598 5:-5061038 None:intergenic
TTGTGTGTTGTGGTAATAAT+AGG 0.267652 5:+5061539 MsG0580024443.01.T01:three_prime_UTR
TATTACCACAACACACAATA+TGG 0.288874 5:-5061563 None:intergenic
ATGTTTGTTAACTCTTCTTT+TGG 0.313451 5:-5059491 None:intergenic
TATGCAAATGATCAAAGTTC+AGG 0.328389 5:+5059753 MsG0580024443.01.T01:CDS
TCATCGTGGATTGGTGAATA+AGG 0.330905 5:+5061247 MsG0580024443.01.T01:CDS
GCAAACCTGGGACCATATTA+TGG 0.336556 5:-5061112 None:intergenic
TAAGCCACATACATATAATA+TGG 0.344593 5:-5061595 None:intergenic
GATTCAATTCTCATGCATAT+TGG 0.346090 5:+5061179 MsG0580024443.01.T01:CDS
TGTATCGTGCTATCTTATCT+TGG 0.351643 5:+5061504 MsG0580024443.01.T01:three_prime_UTR
TGTGTTGTGGTAATAATAAT+AGG 0.358714 5:+5061571 MsG0580024443.01.T01:three_prime_UTR
TCAGGGAAGATTCAAGGTTA+TGG 0.360224 5:+5059771 MsG0580024443.01.T01:CDS
ATAAACGTGATTTGTCTATA+TGG 0.368270 5:+5059868 MsG0580024443.01.T01:CDS
ATGAATATATATTTATTTGA+AGG 0.383980 5:-5061658 None:intergenic
TAAGTGAACTTACATCTGTA+TGG 0.386015 5:-5061079 None:intergenic
TACATTCCTCCTCCATAATA+TGG 0.386987 5:+5061100 MsG0580024443.01.T01:CDS
AGTCCTAGCTAGCAAGATAA+TGG 0.387543 5:+5060917 MsG0580024443.01.T01:CDS
GTGCGAGGTGGAAACCTTGC+TGG 0.390975 5:-5061362 None:intergenic
ATGCTAGTGGTCAACTTGAA+TGG 0.413046 5:+5059811 MsG0580024443.01.T01:CDS
CTTCCATTATCTTGCTAGCT+AGG 0.422131 5:-5060920 None:intergenic
GTATAATCAGCAGGTGTCTT+AGG 0.424548 5:-5059891 None:intergenic
GTTATCTCTTGAACTAGGAT+TGG 0.435827 5:+5060944 MsG0580024443.01.T01:CDS
GCTCTGGCTGAGGGCAAATT+GGG 0.441246 5:-5061037 None:intergenic
TGTGTGTTGTGGTAATAATA+GGG 0.441272 5:+5061540 MsG0580024443.01.T01:three_prime_UTR
TGCTAGTGGTCAACTTGAAT+GGG 0.454514 5:+5059812 MsG0580024443.01.T01:CDS
ATTGATCGTTTGAAGAAAGC+TGG 0.467515 5:+5059688 MsG0580024443.01.T01:intron
CAAAGTTCAGGGAAGATTCA+AGG 0.478666 5:+5059765 MsG0580024443.01.T01:CDS
GACAAATCACGTTTATCCTC+TGG 0.481341 5:-5059861 None:intergenic
CTCCTCCATAATATGGTCCC+AGG 0.491984 5:+5061107 MsG0580024443.01.T01:CDS
TCATAGAAAAGTTGCAAACC+TGG 0.502750 5:-5061125 None:intergenic
GTGTTGTGGTAATAATAATA+GGG 0.513696 5:+5061572 MsG0580024443.01.T01:three_prime_UTR
ATGCAAATGATCAAAGTTCA+GGG 0.522708 5:+5059754 MsG0580024443.01.T01:CDS
TCAACTCCAAGTGCTAGCTC+TGG 0.523457 5:-5061053 None:intergenic
ATATGCATGAGAATTGAATC+AGG 0.524018 5:-5061176 None:intergenic
TCACTTACAAGTTCAGGAAG+TGG 0.529612 5:-5061332 None:intergenic
TCTCTTGAACTAGGATTGGA+AGG 0.540412 5:+5060948 MsG0580024443.01.T01:CDS
CCAAGTGCTAGCTCTGGCTG+AGG 0.541831 5:-5061047 None:intergenic
GAAGTGTTATCTCTTGAACT+AGG 0.543050 5:+5060939 MsG0580024443.01.T01:CDS
TATTCACCAATCCACGATGA+AGG 0.544265 5:-5061244 None:intergenic
ATTACTAACGTATAATCAGC+AGG 0.548828 5:-5059900 None:intergenic
AACTAGGATTGGAAGGAGGA+AGG 0.567524 5:+5060955 MsG0580024443.01.T01:CDS
CCTCAGCCAGAGCTAGCACT+TGG 0.570476 5:+5061047 MsG0580024443.01.T01:CDS
AAAGAAGAGTTAACAAACAT+AGG 0.572842 5:+5059494 MsG0580024443.01.T01:CDS
CTGGGACCATATTATGGAGG+AGG 0.581004 5:-5061106 None:intergenic
AAGTATCCTTCATCGTGGAT+TGG 0.581851 5:+5061238 MsG0580024443.01.T01:CDS
AAGTGAACTTACATCTGTAT+GGG 0.583824 5:-5061078 None:intergenic
AGGGCCATATTATATGTATG+TGG 0.584566 5:+5061591 MsG0580024443.01.T01:three_prime_UTR
CATAGAAAAGTTGCAAACCT+GGG 0.593454 5:-5061124 None:intergenic
GTTGAAAGCTTAGCCTTGAG+TGG 0.594566 5:+5059437 MsG0580024443.01.T01:CDS
GATTGATGCTATACCACTCA+AGG 0.616412 5:-5059450 None:intergenic
ACAATTGAGATACTTAGCAA+TGG 0.617144 5:+5061206 MsG0580024443.01.T01:CDS
CAAGTGCTAGCTCTGGCTGA+GGG 0.640524 5:-5061046 None:intergenic
AAATTAGCTAACAATGCTAG+TGG 0.642740 5:+5059798 MsG0580024443.01.T01:CDS
GGTTACAAGTGAATATGCAA+AGG 0.645291 5:+5060887 MsG0580024443.01.T01:CDS
TGCTGAGCAAAAGTGCGAGG+TGG 0.649651 5:-5061374 None:intergenic
TAGGGCCATATTGTGTGTTG+TGG 0.652093 5:+5061558 MsG0580024443.01.T01:three_prime_UTR
TACAAAAGTATCCTTCATCG+TGG 0.668677 5:+5061233 MsG0580024443.01.T01:CDS
CTTGAACTAGGATTGGAAGG+AGG 0.674989 5:+5060951 MsG0580024443.01.T01:CDS
AACCTGGGACCATATTATGG+AGG 0.688079 5:-5061109 None:intergenic
ATATGCTGAGCAAAAGTGCG+AGG 0.769261 5:-5061377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATTGATATTACAAT+TGG + Chr5:5060783-5060802 MsG0580024443.01.T01:intron 10.0%
!! ATGAATATATATTTATTTGA+AGG - Chr5:5061661-5061680 None:intergenic 10.0%
!!! TAATTTCCTTATTTATAATT+TGG + Chr5:5060100-5060119 MsG0580024443.01.T01:intron 10.0%
!! AGAAAGAAAAAATAATGAAA+TGG - Chr5:5060637-5060656 None:intergenic 15.0%
!! TAAAACATGCAAAAATAATA+AGG - Chr5:5060833-5060852 None:intergenic 15.0%
!! TTAAATTGATAAGAGAAAAA+AGG - Chr5:5060496-5060515 None:intergenic 15.0%
!!! ACAAAAAACTTATTTTTACA+TGG - Chr5:5060685-5060704 None:intergenic 15.0%
!!! GGATGAATATTTTTTATTAA+AGG - Chr5:5061640-5061659 None:intergenic 15.0%
!!! TTCTATTTTAATATTGAGTT+TGG + Chr5:5060371-5060390 MsG0580024443.01.T01:intron 15.0%
!!! TTCTTTTATTAGATTCTAAA+GGG + Chr5:5060451-5060470 MsG0580024443.01.T01:intron 15.0%
!!! TTTCTTTTATTAGATTCTAA+AGG + Chr5:5060450-5060469 MsG0580024443.01.T01:intron 15.0%
!! AAAAAAACCAAAGAATGAAT+TGG - Chr5:5059958-5059977 None:intergenic 20.0%
!! AGACTACCAAATTATAAATA+AGG - Chr5:5060109-5060128 None:intergenic 20.0%
!! CAAAAAATGGAATATTTAGA+AGG - Chr5:5060729-5060748 None:intergenic 20.0%
!! CACAAAGAAGAAAAATATAA+GGG + Chr5:5060254-5060273 MsG0580024443.01.T01:intron 20.0%
!! TCACAAAGAAGAAAAATATA+AGG + Chr5:5060253-5060272 MsG0580024443.01.T01:intron 20.0%
!!! ACAATTATGATTTTTGACTT+GGG - Chr5:5060039-5060058 None:intergenic 20.0%
!!! ATATTCATCACAAACTTTTT+AGG + Chr5:5061396-5061415 MsG0580024443.01.T01:CDS 20.0%
!!! TAATTTTCCAATTCATTCTT+TGG + Chr5:5059948-5059967 MsG0580024443.01.T01:intron 20.0%
!!! TACAATTATGATTTTTGACT+TGG - Chr5:5060040-5060059 None:intergenic 20.0%
! AAAGAAGAGTTAACAAACAT+AGG + Chr5:5059494-5059513 MsG0580024443.01.T01:CDS 25.0%
! AGGAAAAAGTTAGAATATCT+TGG + Chr5:5061267-5061286 MsG0580024443.01.T01:CDS 25.0%
! ATCAAGTCAAAAGTTACTAA+TGG + Chr5:5060345-5060364 MsG0580024443.01.T01:intron 25.0%
! ATTGATAAGAGAAAAAAGGT+TGG - Chr5:5060492-5060511 None:intergenic 25.0%
! GGAAAAAGTTAGAATATCTT+GGG + Chr5:5061268-5061287 MsG0580024443.01.T01:CDS 25.0%
! GTGTTGTGGTAATAATAATA+GGG + Chr5:5061572-5061591 MsG0580024443.01.T01:three_prime_UTR 25.0%
! TAAGCCACATACATATAATA+TGG - Chr5:5061598-5061617 None:intergenic 25.0%
! TAATGGTCAAACACAAAAAA+TGG - Chr5:5060742-5060761 None:intergenic 25.0%
! TGTGTTGTGGTAATAATAAT+AGG + Chr5:5061571-5061590 MsG0580024443.01.T01:three_prime_UTR 25.0%
! TTTGAGGAAGAAAAAAAAGA+AGG + Chr5:5059524-5059543 MsG0580024443.01.T01:intron 25.0%
!! AATCGTAAAATTGCGATTTT+TGG - Chr5:5060011-5060030 None:intergenic 25.0%
!! ATAAACGTGATTTGTCTATA+TGG + Chr5:5059868-5059887 MsG0580024443.01.T01:CDS 25.0%
!! ATCGTAAAATTGCGATTTTT+GGG - Chr5:5060010-5060029 None:intergenic 25.0%
!! TTCAGAATAATTTTCTCCTT+AGG - Chr5:5061311-5061330 None:intergenic 25.0%
!! TTTTAATATTGAGTTTGGCT+TGG + Chr5:5060376-5060395 MsG0580024443.01.T01:intron 25.0%
!! TTTTCTTCTTTGTGATGATT+TGG - Chr5:5060248-5060267 None:intergenic 25.0%
!!! AATGTCATTTGTGTTTTACT+TGG - Chr5:5060598-5060617 None:intergenic 25.0%
!!! ATAATGTTGCACTCATTTTT+TGG - Chr5:5061450-5061469 None:intergenic 25.0%
!!! ATACATGTGTTTTTGAAATC+TGG - Chr5:5060537-5060556 None:intergenic 25.0%
!!! ATGTTTGTTAACTCTTCTTT+TGG - Chr5:5059494-5059513 None:intergenic 25.0%
!!! ATTTCTTTTAGGTCTATTGT+TGG - Chr5:5059559-5059578 None:intergenic 25.0%
!!! CTGAAGAGTTTATTTCTTTT+AGG - Chr5:5059570-5059589 None:intergenic 25.0%
!!! TAATGTTGCACTCATTTTTT+GGG - Chr5:5061449-5061468 None:intergenic 25.0%
!!! TACATGTGTTTTTGAAATCT+GGG - Chr5:5060536-5060555 None:intergenic 25.0%
AAAACCACTCAAAAAAGATG+AGG - Chr5:5060073-5060092 None:intergenic 30.0%
AAACATAGGTAACATCTTTG+AGG + Chr5:5059508-5059527 MsG0580024443.01.T01:intron 30.0%
AAACCACTCAAAAAAGATGA+GGG - Chr5:5060072-5060091 None:intergenic 30.0%
AAATTAGCTAACAATGCTAG+TGG + Chr5:5059798-5059817 MsG0580024443.01.T01:CDS 30.0%
AAGTGAACTTACATCTGTAT+GGG - Chr5:5061081-5061100 None:intergenic 30.0%
ACAACACACAAAAAGTTCAT+AGG - Chr5:5061530-5061549 None:intergenic 30.0%
ACAATTGAGATACTTAGCAA+TGG + Chr5:5061206-5061225 MsG0580024443.01.T01:CDS 30.0%
ATATGCATGAGAATTGAATC+AGG - Chr5:5061179-5061198 None:intergenic 30.0%
ATGCAAATGATCAAAGTTCA+GGG + Chr5:5059754-5059773 MsG0580024443.01.T01:CDS 30.0%
ATTACTAACGTATAATCAGC+AGG - Chr5:5059903-5059922 None:intergenic 30.0%
GATTCAATTCTCATGCATAT+TGG + Chr5:5061179-5061198 MsG0580024443.01.T01:CDS 30.0%
TAAAGTCATCAGATATACCA+TGG - Chr5:5059669-5059688 None:intergenic 30.0%
TAAGTGAACTTACATCTGTA+TGG - Chr5:5061082-5061101 None:intergenic 30.0%
TATGCAAATGATCAAAGTTC+AGG + Chr5:5059753-5059772 MsG0580024443.01.T01:CDS 30.0%
TATTACCACAACACACAATA+TGG - Chr5:5061566-5061585 None:intergenic 30.0%
TGTGTGTTGTGGTAATAATA+GGG + Chr5:5061540-5061559 MsG0580024443.01.T01:three_prime_UTR 30.0%
TTGTGTGTTGTGGTAATAAT+AGG + Chr5:5061539-5061558 MsG0580024443.01.T01:three_prime_UTR 30.0%
! AGAATAATTTTCTCCTTAGG+TGG - Chr5:5061308-5061327 None:intergenic 30.0%
! ATTTCTCTGTTTTCTTCAAC+AGG - Chr5:5059734-5059753 None:intergenic 30.0%
! TATGAACTTTTTGTGTGTTG+TGG + Chr5:5061529-5061548 MsG0580024443.01.T01:three_prime_UTR 30.0%
! TTGGTCTCACATATTCTTTT+GGG - Chr5:5059475-5059494 None:intergenic 30.0%
! TTTGGTCTCACATATTCTTT+TGG - Chr5:5059476-5059495 None:intergenic 30.0%
!! TCATCACAAACTTTTTAGGA+AGG + Chr5:5061400-5061419 MsG0580024443.01.T01:CDS 30.0%
!! TCTTTTTCACTTACAAGTTC+AGG - Chr5:5061341-5061360 None:intergenic 30.0%
!!! TTTCATTGCATTTTTTCCAG+AGG + Chr5:5059845-5059864 MsG0580024443.01.T01:CDS 30.0%
AAAGCTATGCAAAACGCTAA+TGG - Chr5:5060759-5060778 None:intergenic 35.0%
AGGGCCATATTATATGTATG+TGG + Chr5:5061591-5061610 MsG0580024443.01.T01:three_prime_UTR 35.0%
ATTGATCGTTTGAAGAAAGC+TGG + Chr5:5059688-5059707 MsG0580024443.01.T01:intron 35.0%
CAATATATGACGCTACATGA+AGG + Chr5:5060202-5060221 MsG0580024443.01.T01:intron 35.0%
CATAGAAAAGTTGCAAACCT+GGG - Chr5:5061127-5061146 None:intergenic 35.0%
GGTTACAAGTGAATATGCAA+AGG + Chr5:5060887-5060906 MsG0580024443.01.T01:CDS 35.0%
GTTATCTCTTGAACTAGGAT+TGG + Chr5:5060944-5060963 MsG0580024443.01.T01:CDS 35.0%
TAAGTGAAAAAGAACCAGCA+AGG + Chr5:5061348-5061367 MsG0580024443.01.T01:CDS 35.0%
TACATTCCTCCTCCATAATA+TGG + Chr5:5061100-5061119 MsG0580024443.01.T01:CDS 35.0%
TCATAGAAAAGTTGCAAACC+TGG - Chr5:5061128-5061147 None:intergenic 35.0%
TCTTCAGATGAAAGAGTTAG+AGG + Chr5:5059583-5059602 MsG0580024443.01.T01:intron 35.0%
TGTATCGTGCTATCTTATCT+TGG + Chr5:5061504-5061523 MsG0580024443.01.T01:three_prime_UTR 35.0%
TTATTGACATAGTACCCAGT+TGG + Chr5:5060167-5060186 MsG0580024443.01.T01:intron 35.0%
! AACTTTTCTATGAGGGCAAA+TGG + Chr5:5061135-5061154 MsG0580024443.01.T01:CDS 35.0%
! ACTTTTCTATGAGGGCAAAT+GGG + Chr5:5061136-5061155 MsG0580024443.01.T01:CDS 35.0%
! AGGTTTGCAACTTTTCTATG+AGG + Chr5:5061127-5061146 MsG0580024443.01.T01:CDS 35.0%
! GAAGTGTTATCTCTTGAACT+AGG + Chr5:5060939-5060958 MsG0580024443.01.T01:CDS 35.0%
! GGTTTGCAACTTTTCTATGA+GGG + Chr5:5061128-5061147 MsG0580024443.01.T01:CDS 35.0%
!! CAAACTTTTTAGGAAGGATG+AGG + Chr5:5061406-5061425 MsG0580024443.01.T01:CDS 35.0%
!! TACAAAAGTATCCTTCATCG+TGG + Chr5:5061233-5061252 MsG0580024443.01.T01:CDS 35.0%
AAGTATCCTTCATCGTGGAT+TGG + Chr5:5061238-5061257 MsG0580024443.01.T01:CDS 40.0%
AGAAAAAGAAGCTGGTGGAA+TGG + Chr5:5060980-5060999 MsG0580024443.01.T01:CDS 40.0%
AGGTTAGAAAAAGAAGCTGG+TGG + Chr5:5060975-5060994 MsG0580024443.01.T01:CDS 40.0%
AGTCCTAGCTAGCAAGATAA+TGG + Chr5:5060917-5060936 MsG0580024443.01.T01:CDS 40.0%
ATGCTAGTGGTCAACTTGAA+TGG + Chr5:5059811-5059830 MsG0580024443.01.T01:CDS 40.0%
CAAAGTTCAGGGAAGATTCA+AGG + Chr5:5059765-5059784 MsG0580024443.01.T01:CDS 40.0%
CTTCCATTATCTTGCTAGCT+AGG - Chr5:5060923-5060942 None:intergenic 40.0%
GACAAATCACGTTTATCCTC+TGG - Chr5:5059864-5059883 None:intergenic 40.0%
GATTGATGCTATACCACTCA+AGG - Chr5:5059453-5059472 None:intergenic 40.0%
GGAAGGTTAGAAAAAGAAGC+TGG + Chr5:5060972-5060991 MsG0580024443.01.T01:CDS 40.0%
GTATAATCAGCAGGTGTCTT+AGG - Chr5:5059894-5059913 None:intergenic 40.0%
TAAGAAAGCTGCAGAGGAAT+GGG + Chr5:5059624-5059643 MsG0580024443.01.T01:intron 40.0%
TATTCACCAATCCACGATGA+AGG - Chr5:5061247-5061266 None:intergenic 40.0%
TCACTTACAAGTTCAGGAAG+TGG - Chr5:5061335-5061354 None:intergenic 40.0%
TCAGGGAAGATTCAAGGTTA+TGG + Chr5:5059771-5059790 MsG0580024443.01.T01:CDS 40.0%
TCTCTTGAACTAGGATTGGA+AGG + Chr5:5060948-5060967 MsG0580024443.01.T01:CDS 40.0%
TGCTAGTGGTCAACTTGAAT+GGG + Chr5:5059812-5059831 MsG0580024443.01.T01:CDS 40.0%
TTAAGAAAGCTGCAGAGGAA+TGG + Chr5:5059623-5059642 MsG0580024443.01.T01:intron 40.0%
! AGTGTTTTGTGAACCACCTA+AGG + Chr5:5061292-5061311 MsG0580024443.01.T01:CDS 40.0%
!! ACTTTTTAGGAAGGATGAGG+AGG + Chr5:5061409-5061428 MsG0580024443.01.T01:CDS 40.0%
!! TCATCGTGGATTGGTGAATA+AGG + Chr5:5061247-5061266 MsG0580024443.01.T01:CDS 40.0%
!!! TGACCCTCATCTTTTTTGAG+TGG + Chr5:5060066-5060085 MsG0580024443.01.T01:intron 40.0%
AACCTGGGACCATATTATGG+AGG - Chr5:5061112-5061131 None:intergenic 45.0%
AACTAGGATTGGAAGGAGGA+AGG + Chr5:5060955-5060974 MsG0580024443.01.T01:CDS 45.0%
AAGAAAGCTGCAGAGGAATG+GGG + Chr5:5059625-5059644 MsG0580024443.01.T01:intron 45.0%
CGTCATATATTGACCGACAC+TGG - Chr5:5060194-5060213 None:intergenic 45.0%
CTTGAACTAGGATTGGAAGG+AGG + Chr5:5060951-5060970 MsG0580024443.01.T01:CDS 45.0%
GAAGCTTAAGAAAGCTGCAG+AGG + Chr5:5059618-5059637 MsG0580024443.01.T01:intron 45.0%
GCAAACCTGGGACCATATTA+TGG - Chr5:5061115-5061134 None:intergenic 45.0%
GTGATGCATCTAGTGAACCA+TGG + Chr5:5059649-5059668 MsG0580024443.01.T01:intron 45.0%
TAGGGCCATATTGTGTGTTG+TGG + Chr5:5061558-5061577 MsG0580024443.01.T01:three_prime_UTR 45.0%
! ATATGCTGAGCAAAAGTGCG+AGG - Chr5:5061380-5061399 None:intergenic 45.0%
! TTTGGTGTATGCATGCAGTG+AGG + Chr5:5060866-5060885 MsG0580024443.01.T01:intron 45.0%
!! GTTGAAAGCTTAGCCTTGAG+TGG + Chr5:5059437-5059456 MsG0580024443.01.T01:CDS 45.0%
!!! TTTTATCAAAATAATTTTTT+TGG + Chr5:5060848-5060867 MsG0580024443.01.T01:intron 5.0%
CTCCTCCATAATATGGTCCC+AGG + Chr5:5061107-5061126 MsG0580024443.01.T01:CDS 50.0%
CTGGGACCATATTATGGAGG+AGG - Chr5:5061109-5061128 None:intergenic 50.0%
TCAACTCCAAGTGCTAGCTC+TGG - Chr5:5061056-5061075 None:intergenic 50.0%
GCTCTGGCTGAGGGCAAATT+GGG - Chr5:5061040-5061059 None:intergenic 55.0%
GTACCCAGTTGGACCAGTGT+CGG + Chr5:5060178-5060197 MsG0580024443.01.T01:intron 55.0%
TGACCGACACTGGTCCAACT+GGG - Chr5:5060184-5060203 None:intergenic 55.0%
TTGACCGACACTGGTCCAAC+TGG - Chr5:5060185-5060204 None:intergenic 55.0%
! AGCTCTGGCTGAGGGCAAAT+TGG - Chr5:5061041-5061060 None:intergenic 55.0%
! TGCTGAGCAAAAGTGCGAGG+TGG - Chr5:5061377-5061396 None:intergenic 55.0%
!! CAAGTGCTAGCTCTGGCTGA+GGG - Chr5:5061049-5061068 None:intergenic 55.0%
CCTCAGCCAGAGCTAGCACT+TGG + Chr5:5061047-5061066 MsG0580024443.01.T01:CDS 60.0%
GTGCGAGGTGGAAACCTTGC+TGG - Chr5:5061365-5061384 None:intergenic 60.0%
!! CCAAGTGCTAGCTCTGGCTG+AGG - Chr5:5061050-5061069 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5059428 5061696 5059428 ID=MsG0580024443.01;Name=MsG0580024443.01
Chr5 mRNA 5059428 5061696 5059428 ID=MsG0580024443.01.T01;Parent=MsG0580024443.01;Name=MsG0580024443.01.T01;_AED=0.28;_eAED=0.28;_QI=0|0.5|0.33|1|1|1|3|239|290
Chr5 exon 5059428 5059515 5059428 ID=MsG0580024443.01.T01:exon:18999;Parent=MsG0580024443.01.T01
Chr5 exon 5059703 5059913 5059703 ID=MsG0580024443.01.T01:exon:19000;Parent=MsG0580024443.01.T01
Chr5 exon 5060884 5061696 5060884 ID=MsG0580024443.01.T01:exon:19001;Parent=MsG0580024443.01.T01
Chr5 CDS 5059428 5059515 5059428 ID=MsG0580024443.01.T01:cds;Parent=MsG0580024443.01.T01
Chr5 CDS 5059703 5059913 5059703 ID=MsG0580024443.01.T01:cds;Parent=MsG0580024443.01.T01
Chr5 CDS 5060884 5061457 5060884 ID=MsG0580024443.01.T01:cds;Parent=MsG0580024443.01.T01
Chr5 three_prime_UTR 5061458 5061696 5061458 ID=MsG0580024443.01.T01:three_prime_utr;Parent=MsG0580024443.01.T01
Gene Sequence

>MsG0580024443.01.T01

ATGGGAAGAGTTGAAAGCTTAGCCTTGAGTGGTATAGCATCAATCCCAAAAGAATATGTGAGACCAAAAGAAGAGTTAACAAACATAGAAAGCTGGTTGAAAACATTTTTGAGCTTCCTGTTGAAGAAAACAGAGAAATATGCAAATGATCAAAGTTCAGGGAAGATTCAAGGTTATGGAAGTAAATTAGCTAACAATGCTAGTGGTCAACTTGAATGGGAAAGTATTTCTTTCATTGCATTTTTTCCAGAGGATAAACGTGATTTGTCTATATGGCCTAAGACACCTGCTGATTATACTGAGGTTACAAGTGAATATGCAAAGGAATTAAGAGTCCTAGCTAGCAAGATAATGGAAGTGTTATCTCTTGAACTAGGATTGGAAGGAGGAAGGTTAGAAAAAGAAGCTGGTGGAATGGAAGAGCTTTTACTTCAAATGAAAATTAATTACTACCCAATTTGCCCTCAGCCAGAGCTAGCACTTGGAGTTGAAGCCCATACAGATGTAAGTTCACTTACATTCCTCCTCCATAATATGGTCCCAGGTTTGCAACTTTTCTATGAGGGCAAATGGGTCACTGCAAAATGTGTACCTGATTCAATTCTCATGCATATTGGTGACACAATTGAGATACTTAGCAATGGAAAGTACAAAAGTATCCTTCATCGTGGATTGGTGAATAAGGAAAAAGTTAGAATATCTTGGGCAGTGTTTTGTGAACCACCTAAGGAGAAAATTATTCTGAAGCCACTTCCTGAACTTGTAAGTGAAAAAGAACCAGCAAGGTTTCCACCTCGCACTTTTGCTCAGCATATTCATCACAAACTTTTTAGGAAGGATGAGGAGGAGAAGAAAGATGATCCCAAAAAATGA

Protein sequence

>MsG0580024443.01.T01

MGRVESLALSGIASIPKEYVRPKEELTNIESWLKTFLSFLLKKTEKYANDQSSGKIQGYGSKLANNASGQLEWESISFIAFFPEDKRDLSIWPKTPADYTEVTSEYAKELRVLASKIMEVLSLELGLEGGRLEKEAGGMEELLLQMKINYYPICPQPELALGVEAHTDVSSLTFLLHNMVPGLQLFYEGKWVTAKCVPDSILMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIILKPLPELVSEKEPARFPPRTFAQHIHHKLFRKDEEEKKDDPKK*