Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030862.01.T01 | XP_003618574.2 | 93.143 | 175 | 12 | 0 | 1 | 175 | 1 | 175 | 2.04E-116 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030862.01.T01 | Q39131 | 46.099 | 141 | 70 | 3 | 7 | 146 | 6 | 141 | 1.10E-33 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030862.01.T01 | G7KLC9 | 93.143 | 175 | 12 | 0 | 1 | 175 | 1 | 175 | 9.74e-117 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0680030862.01 | MsG0680031092.01 | 0.806796 | 6.911349e-50 | 3.785884e-47 |
| MsG0680030862.01 | MsG0680035658.01 | 0.829487 | 5.007703e-55 | 5.132527e-52 |
| MsG0680030862.01 | MsG0780038691.01 | 0.800816 | 1.206708e-48 | 5.672762e-46 |
| MsG0680030862.01 | MsG0880042311.01 | 0.813448 | 2.547154e-51 | 1.663924e-48 |
| MsG0680030862.01 | MsG0880042734.01 | 0.805204 | 1.494502e-49 | 7.859333e-47 |
| MsG0680030862.01 | MsG0880042760.01 | 0.803939 | 2.743145e-49 | 1.396478e-46 |
| MsG0680030862.01 | MsG0880043480.01 | 0.819242 | 1.287323e-52 | 9.852551e-50 |
| MsG0380015944.01 | MsG0680030862.01 | 0.822099 | 2.838477e-53 | 2.352840e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030862.01.T01 | MTR_6g013170 | 93.143 | 175 | 12 | 0 | 1 | 175 | 1 | 175 | 2.47e-120 | 337 |
| MsG0680030862.01.T01 | MTR_5g088000 | 64.762 | 105 | 36 | 1 | 34 | 137 | 24 | 128 | 2.00e-45 | 146 |
| MsG0680030862.01.T01 | MTR_3g117110 | 55.462 | 119 | 52 | 1 | 28 | 145 | 27 | 145 | 8.12e-44 | 143 |
| MsG0680030862.01.T01 | MTR_5g088180 | 52.800 | 125 | 57 | 2 | 31 | 153 | 29 | 153 | 9.36e-44 | 143 |
| MsG0680030862.01.T01 | MTR_5g088170 | 52.000 | 125 | 58 | 2 | 31 | 153 | 16 | 140 | 1.56e-42 | 139 |
| MsG0680030862.01.T01 | MTR_5g087970 | 55.462 | 119 | 47 | 3 | 25 | 137 | 23 | 141 | 7.53e-37 | 125 |
| MsG0680030862.01.T01 | MTR_6g013420 | 42.424 | 165 | 86 | 4 | 9 | 167 | 17 | 178 | 9.09e-33 | 115 |
| MsG0680030862.01.T01 | MTR_6g013200 | 41.538 | 130 | 72 | 2 | 4 | 132 | 11 | 137 | 1.44e-26 | 99.4 |
| MsG0680030862.01.T01 | MTR_4g007250 | 34.615 | 130 | 74 | 2 | 31 | 150 | 29 | 157 | 6.20e-22 | 87.4 |
| MsG0680030862.01.T01 | MTR_6g080660 | 39.796 | 98 | 56 | 3 | 31 | 127 | 28 | 123 | 1.48e-14 | 68.9 |
| MsG0680030862.01.T01 | MTR_5g006040 | 27.381 | 168 | 107 | 5 | 1 | 162 | 4 | 162 | 1.93e-14 | 68.2 |
| MsG0680030862.01.T01 | MTR_2g088990 | 36.434 | 129 | 70 | 7 | 31 | 152 | 25 | 148 | 1.52e-13 | 66.6 |
| MsG0680030862.01.T01 | MTR_1g090420 | 30.370 | 135 | 78 | 5 | 33 | 152 | 30 | 163 | 2.63e-13 | 65.9 |
| MsG0680030862.01.T01 | MTR_6g023760 | 37.113 | 97 | 59 | 2 | 31 | 126 | 26 | 121 | 2.71e-13 | 65.1 |
| MsG0680030862.01.T01 | MTR_8g086360 | 34.783 | 138 | 76 | 6 | 9 | 136 | 1 | 134 | 2.99e-12 | 62.4 |
| MsG0680030862.01.T01 | MTR_1g104800 | 31.000 | 100 | 65 | 3 | 30 | 126 | 24 | 122 | 6.14e-12 | 61.6 |
| MsG0680030862.01.T01 | MTR_8g007020 | 30.864 | 162 | 92 | 5 | 33 | 175 | 26 | 186 | 6.61e-12 | 61.2 |
| MsG0680030862.01.T01 | MTR_7g086140 | 31.933 | 119 | 70 | 4 | 1 | 116 | 1 | 111 | 7.29e-12 | 60.8 |
| MsG0680030862.01.T01 | MTR_7g086190 | 31.933 | 119 | 70 | 4 | 1 | 116 | 1 | 111 | 7.29e-12 | 60.8 |
| MsG0680030862.01.T01 | MTR_8g463180 | 34.545 | 110 | 68 | 3 | 33 | 139 | 26 | 134 | 1.01e-11 | 62.4 |
| MsG0680030862.01.T01 | MTR_3g089005 | 28.696 | 115 | 79 | 2 | 12 | 126 | 14 | 125 | 1.35e-11 | 59.3 |
| MsG0680030862.01.T01 | MTR_7g086160 | 31.933 | 119 | 71 | 4 | 1 | 116 | 1 | 112 | 2.74e-11 | 59.3 |
| MsG0680030862.01.T01 | MTR_3g099980 | 33.898 | 118 | 72 | 4 | 16 | 128 | 8 | 124 | 4.93e-11 | 59.7 |
| MsG0680030862.01.T01 | MTR_8g007035 | 40.206 | 97 | 53 | 4 | 33 | 126 | 26 | 120 | 5.44e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030862.01.T01 | AT2G27035 | 46.565 | 131 | 65 | 2 | 22 | 151 | 19 | 145 | 6.52e-39 | 130 |
| MsG0680030862.01.T01 | AT5G15350 | 46.099 | 141 | 70 | 3 | 7 | 146 | 6 | 141 | 1.12e-34 | 120 |
| MsG0680030862.01.T01 | AT4G12880 | 47.967 | 123 | 62 | 2 | 6 | 127 | 5 | 126 | 1.48e-31 | 111 |
| MsG0680030862.01.T01 | AT3G01070 | 47.059 | 102 | 52 | 2 | 29 | 128 | 25 | 126 | 2.24e-19 | 80.9 |
| MsG0680030862.01.T01 | AT3G27200 | 34.146 | 123 | 75 | 3 | 5 | 126 | 4 | 121 | 1.70e-15 | 70.9 |
| MsG0680030862.01.T01 | AT2G32300 | 32.540 | 126 | 79 | 3 | 31 | 151 | 26 | 150 | 2.33e-15 | 72.0 |
| MsG0680030862.01.T01 | AT4G12880 | 52.174 | 69 | 32 | 1 | 60 | 127 | 20 | 88 | 3.63e-15 | 68.2 |
| MsG0680030862.01.T01 | AT2G32300 | 32.540 | 126 | 79 | 3 | 31 | 151 | 56 | 180 | 4.96e-15 | 71.2 |
| MsG0680030862.01.T01 | AT3G17675 | 31.034 | 116 | 78 | 2 | 12 | 126 | 13 | 127 | 2.62e-13 | 63.9 |
| MsG0680030862.01.T01 | AT2G26720 | 34.711 | 121 | 70 | 5 | 23 | 136 | 22 | 140 | 2.83e-13 | 65.5 |
| MsG0680030862.01.T01 | AT2G31050 | 39.423 | 104 | 56 | 4 | 27 | 126 | 25 | 125 | 3.70e-13 | 65.1 |
| MsG0680030862.01.T01 | AT5G26330 | 29.508 | 122 | 81 | 4 | 9 | 126 | 1 | 121 | 2.09e-12 | 62.8 |
Find 42 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATGGTGAGTGTGGTTT+TGG | 0.224601 | 6:-10601951 | MsG0680030862.01.T01:CDS |
| CCATCAATGTATAAATGCTT+TGG | 0.298696 | 6:-10600167 | MsG0680030862.01.T01:CDS |
| CCAAAGCATTTATACATTGA+TGG | 0.310772 | 6:+10600167 | None:intergenic |
| AGAATGTCAACTACACTAAA+TGG | 0.326899 | 6:-10601850 | MsG0680030862.01.T01:CDS |
| CATCAATGTATAAATGCTTT+GGG | 0.352459 | 6:-10600166 | MsG0680030862.01.T01:CDS |
| GGTGGAGGTTACTGCTTTCA+TGG | 0.363773 | 6:-10600284 | MsG0680030862.01.T01:CDS |
| GACATTCTGATTCCAACCTT+TGG | 0.366517 | 6:+10601865 | None:intergenic |
| CCTCCCACCTTATGAAGCTT+TGG | 0.418516 | 6:+10601890 | None:intergenic |
| TCTTGTCAAGTTTCTTATGA+AGG | 0.439117 | 6:+10600361 | None:intergenic |
| ATTGTGGCCAATGGTGGTCA+TGG | 0.472414 | 6:-10601918 | MsG0680030862.01.T01:CDS |
| CAAAAGATACTACAACGTAT+TGG | 0.479223 | 6:-10600423 | MsG0680030862.01.T01:CDS |
| AAATGTTGTTTATGTGAGCT+TGG | 0.487197 | 6:-10600132 | MsG0680030862.01.T01:CDS |
| GGACCTCCCATGACCACCAT+TGG | 0.487403 | 6:+10601911 | None:intergenic |
| TTGTGGCCAATGGTGGTCAT+GGG | 0.494982 | 6:-10601917 | MsG0680030862.01.T01:CDS |
| TCGCGATGTGGTTCAATTGA+CGG | 0.504641 | 6:-10600333 | MsG0680030862.01.T01:CDS |
| TACTACTTTATCACCGGTGG+AGG | 0.525846 | 6:-10600299 | MsG0680030862.01.T01:CDS |
| GGGAGGTCCAAAGCTTCATA+AGG | 0.541271 | 6:-10601897 | MsG0680030862.01.T01:CDS |
| AGTGTTGTCATTGTGGCCAA+TGG | 0.543550 | 6:-10601927 | MsG0680030862.01.T01:CDS |
| TTCATTGTATCAGAAAGAGA+TGG | 0.552490 | 6:+10600212 | None:intergenic |
| GAAAGAGATGGAGATGGTGC+AGG | 0.556485 | 6:+10600224 | None:intergenic |
| AGCATGTCTATGTTGGTGAT+TGG | 0.563002 | 6:-10601817 | MsG0680030862.01.T01:CDS |
| TTGATGTTCTTGAACGTCCA+CGG | 0.563672 | 6:+10600250 | None:intergenic |
| TCTCAAGAGCATGTCTATGT+TGG | 0.570965 | 6:-10601824 | MsG0680030862.01.T01:CDS |
| TGGCCAATGGTGGTCATGGG+AGG | 0.572145 | 6:-10601914 | MsG0680030862.01.T01:CDS |
| CATAAGGTGGGAGGATCCAA+AGG | 0.579599 | 6:-10601881 | MsG0680030862.01.T01:CDS |
| GTTGTCATTGTGGCCAATGG+TGG | 0.582644 | 6:-10601924 | MsG0680030862.01.T01:CDS |
| ATAAGAAACTTGACAAGAGG+TGG | 0.589525 | 6:-10600356 | MsG0680030862.01.T01:CDS |
| AGGTGGGAGGATCCAAAGGT+TGG | 0.592986 | 6:-10601877 | MsG0680030862.01.T01:CDS |
| ATGAAAGCAGTAACCTCCAC+CGG | 0.596550 | 6:+10600286 | None:intergenic |
| TTCATAAGAAACTTGACAAG+AGG | 0.597109 | 6:-10600359 | MsG0680030862.01.T01:CDS |
| AGGTCCAAAGCTTCATAAGG+TGG | 0.599406 | 6:-10601894 | MsG0680030862.01.T01:CDS |
| AAGACATACTACTTTATCAC+CGG | 0.609394 | 6:-10600305 | MsG0680030862.01.T01:CDS |
| ACATACTACTTTATCACCGG+TGG | 0.610826 | 6:-10600302 | MsG0680030862.01.T01:CDS |
| GTATTGGAAGTGAACAAGAC+AGG | 0.615002 | 6:-10600407 | MsG0680030862.01.T01:CDS |
| TCTGATACAATGAAATCTAG+TGG | 0.617662 | 6:-10600203 | MsG0680030862.01.T01:CDS |
| TCATGGAATGAAAGTTGCCG+TGG | 0.625731 | 6:-10600267 | MsG0680030862.01.T01:CDS |
| GACAAGAGGTGGTCGCGATG+TGG | 0.637295 | 6:-10600345 | MsG0680030862.01.T01:CDS |
| GGTCCAAAGCTTCATAAGGT+GGG | 0.645031 | 6:-10601893 | MsG0680030862.01.T01:CDS |
| GTATCAGAAAGAGATGGAGA+TGG | 0.657311 | 6:+10600218 | None:intergenic |
| CCAAAGCTTCATAAGGTGGG+AGG | 0.659873 | 6:-10601890 | MsG0680030862.01.T01:CDS |
| GATACAATGAAATCTAGTGG+TGG | 0.676277 | 6:-10600200 | MsG0680030862.01.T01:CDS |
| CGATGTGGTTCAATTGACGG+AGG | 0.705107 | 6:-10600330 | MsG0680030862.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAACATTTTAATTTTAATT+TGG | - | Chr6:10600562-10600581 | MsG0680030862.01.T01:intron | 10.0% |
| !! | AAAATGATTAAAAAACATGA+TGG | + | Chr6:10600604-10600623 | None:intergenic | 15.0% |
| !! | AAGTTATATCTACTATAATA+TGG | + | Chr6:10601489-10601508 | None:intergenic | 15.0% |
| !! | AATAAAAGAGAAAAAGTTAA+AGG | - | Chr6:10601212-10601231 | MsG0680030862.01.T01:intron | 15.0% |
| !! | AATTAACTATCATATAATGT+TGG | - | Chr6:10600627-10600646 | MsG0680030862.01.T01:intron | 15.0% |
| !!! | TTATGAACTATGATAATTTT+TGG | - | Chr6:10600686-10600705 | MsG0680030862.01.T01:intron | 15.0% |
| !! | ACAAATCAATAAATGAGAAA+AGG | + | Chr6:10600943-10600962 | None:intergenic | 20.0% |
| !! | ACAATGTTAAAGTTTGAAAA+CGG | + | Chr6:10600994-10601013 | None:intergenic | 20.0% |
| !!! | AAATTCAAGAGTTATTTTGA+TGG | - | Chr6:10600117-10600136 | MsG0680030862.01.T01:CDS | 20.0% |
| !!! | ATAATGAAGTTTTTTTTACG+TGG | - | Chr6:10601144-10601163 | MsG0680030862.01.T01:intron | 20.0% |
| !!! | CTTTTGTTTTTACAAACTTT+GGG | + | Chr6:10600849-10600868 | None:intergenic | 20.0% |
| !!! | TAATGAAGTTTTTTTTACGT+GGG | - | Chr6:10601145-10601164 | MsG0680030862.01.T01:intron | 20.0% |
| ! | AAGTTTGTAAAAACAAAAGG+TGG | - | Chr6:10600850-10600869 | MsG0680030862.01.T01:intron | 25.0% |
| ! | ATATTTCTCGTAATTATCAC+TGG | - | Chr6:10600726-10600745 | MsG0680030862.01.T01:intron | 25.0% |
| ! | ATCGAGAAATAAACAATTGT+TGG | + | Chr6:10600900-10600919 | None:intergenic | 25.0% |
| ! | ATGCTTAGCAAAATAATTAC+TGG | - | Chr6:10601612-10601631 | MsG0680030862.01.T01:intron | 25.0% |
| ! | CATCAATGTATAAATGCTTT+GGG | - | Chr6:10601917-10601936 | MsG0680030862.01.T01:CDS | 25.0% |
| ! | CCAAAGTTTGTAAAAACAAA+AGG | - | Chr6:10600847-10600866 | MsG0680030862.01.T01:intron | 25.0% |
| ! | CCAATATGGAATTTCATAAA+AGG | - | Chr6:10601406-10601425 | MsG0680030862.01.T01:intron | 25.0% |
| ! | GACAAAATTGAAATCCAATA+TGG | - | Chr6:10601392-10601411 | MsG0680030862.01.T01:intron | 25.0% |
| ! | TCTTATTCTAACACTAGAAA+AGG | - | Chr6:10601570-10601589 | MsG0680030862.01.T01:intron | 25.0% |
| !! | CCTTTTATGAAATTCCATAT+TGG | + | Chr6:10601409-10601428 | None:intergenic | 25.0% |
| !! | TAGCAAAATAATTACTGGTT+TGG | - | Chr6:10601617-10601636 | MsG0680030862.01.T01:intron | 25.0% |
| !!! | ATCGTTTTGATTATTGATTG+TGG | - | Chr6:10600482-10600501 | MsG0680030862.01.T01:intron | 25.0% |
| !!! | CCTTTTGTTTTTACAAACTT+TGG | + | Chr6:10600850-10600869 | None:intergenic | 25.0% |
| !!! | GATTCATTGCAAACTTTTTT+TGG | + | Chr6:10601336-10601355 | None:intergenic | 25.0% |
| AAGACATACTACTTTATCAC+CGG | - | Chr6:10601778-10601797 | MsG0680030862.01.T01:intron | 30.0% | |
| AGAATGTCAACTACACTAAA+TGG | - | Chr6:10600233-10600252 | MsG0680030862.01.T01:CDS | 30.0% | |
| ATTACCCTTATGACTGTAAT+GGG | + | Chr6:10601195-10601214 | None:intergenic | 30.0% | |
| CAAAAGATACTACAACGTAT+TGG | - | Chr6:10601660-10601679 | MsG0680030862.01.T01:intron | 30.0% | |
| CCATCAATGTATAAATGCTT+TGG | - | Chr6:10601916-10601935 | MsG0680030862.01.T01:CDS | 30.0% | |
| CTCAATTTCTGCTTAGAATT+TGG | - | Chr6:10601090-10601109 | MsG0680030862.01.T01:intron | 30.0% | |
| TATTACCCTTATGACTGTAA+TGG | + | Chr6:10601196-10601215 | None:intergenic | 30.0% | |
| TCTGATACAATGAAATCTAG+TGG | - | Chr6:10601880-10601899 | MsG0680030862.01.T01:CDS | 30.0% | |
| TCTTGTCAAGTTTCTTATGA+AGG | + | Chr6:10601725-10601744 | None:intergenic | 30.0% | |
| TTCATAAGAAACTTGACAAG+AGG | - | Chr6:10601724-10601743 | MsG0680030862.01.T01:intron | 30.0% | |
| TTCATTGTATCAGAAAGAGA+TGG | + | Chr6:10601874-10601893 | None:intergenic | 30.0% | |
| ! | AAATGTTGTTTATGTGAGCT+TGG | - | Chr6:10601951-10601970 | MsG0680030862.01.T01:CDS | 30.0% |
| ! | ATTGTTGGCTAGTAATTGTT+TGG | + | Chr6:10600885-10600904 | None:intergenic | 30.0% |
| ! | ATTTCAATTTTGTCTCCAAC+TGG | + | Chr6:10601386-10601405 | None:intergenic | 30.0% |
| ! | CCAAAGCATTTATACATTGA+TGG | + | Chr6:10601919-10601938 | None:intergenic | 30.0% |
| ! | TTTCAATTTTGTCTCCAACT+GGG | + | Chr6:10601385-10601404 | None:intergenic | 30.0% |
| !! | AAATCGTACGTTTTGAATAG+AGG | + | Chr6:10601290-10601309 | None:intergenic | 30.0% |
| AATTAACAAACATCCCCAGT+TGG | - | Chr6:10601368-10601387 | MsG0680030862.01.T01:intron | 35.0% | |
| ATAAGAAACTTGACAAGAGG+TGG | - | Chr6:10601727-10601746 | MsG0680030862.01.T01:intron | 35.0% | |
| CGATAAACATGAAGATCGAA+TGG | + | Chr6:10600466-10600485 | None:intergenic | 35.0% | |
| GATACAATGAAATCTAGTGG+TGG | - | Chr6:10601883-10601902 | MsG0680030862.01.T01:CDS | 35.0% | |
| ! | AACTGGGGATGTTTGTTAAT+TGG | + | Chr6:10601369-10601388 | None:intergenic | 35.0% |
| ! | TTCAATTTTGTCTCCAACTG+GGG | + | Chr6:10601384-10601403 | None:intergenic | 35.0% |
| !!! | AGTTATTTTGATGGTGAGTG+TGG | - | Chr6:10600126-10600145 | MsG0680030862.01.T01:CDS | 35.0% |
| !!! | GAAGTTTTTTTTACGTGGGT+TGG | - | Chr6:10601149-10601168 | MsG0680030862.01.T01:intron | 35.0% |
| !!! | TATGTGAGCTTGGTTTTAGT+GGG | - | Chr6:10601961-10601980 | MsG0680030862.01.T01:CDS | 35.0% |
| !!! | TTATGTGAGCTTGGTTTTAG+TGG | - | Chr6:10601960-10601979 | MsG0680030862.01.T01:CDS | 35.0% |
| ACATACTACTTTATCACCGG+TGG | - | Chr6:10601781-10601800 | MsG0680030862.01.T01:intron | 40.0% | |
| GACATTCTGATTCCAACCTT+TGG | + | Chr6:10600221-10600240 | None:intergenic | 40.0% | |
| GTATCAGAAAGAGATGGAGA+TGG | + | Chr6:10601868-10601887 | None:intergenic | 40.0% | |
| GTATTGGAAGTGAACAAGAC+AGG | - | Chr6:10601676-10601695 | MsG0680030862.01.T01:intron | 40.0% | |
| TTGATGTTCTTGAACGTCCA+CGG | + | Chr6:10601836-10601855 | None:intergenic | 40.0% | |
| ! | TCTCAAGAGCATGTCTATGT+TGG | - | Chr6:10600259-10600278 | MsG0680030862.01.T01:CDS | 40.0% |
| !! | AGCATGTCTATGTTGGTGAT+TGG | - | Chr6:10600266-10600285 | MsG0680030862.01.T01:CDS | 40.0% |
| !!! | ATGTGAGCTTGGTTTTAGTG+GGG | - | Chr6:10601962-10601981 | MsG0680030862.01.T01:CDS | 40.0% |
| !!! | TTGATGGTGAGTGTGGTTTT+GGG | - | Chr6:10600133-10600152 | MsG0680030862.01.T01:CDS | 40.0% |
| !!! | TTTGATGGTGAGTGTGGTTT+TGG | - | Chr6:10600132-10600151 | MsG0680030862.01.T01:CDS | 40.0% |
| !!! | TTTTACGTGGGTTGGAGTAT+TGG | - | Chr6:10601157-10601176 | MsG0680030862.01.T01:intron | 40.0% |
| !!! | TTTTGGGAGTGTTGTCATTG+TGG | - | Chr6:10600149-10600168 | MsG0680030862.01.T01:CDS | 40.0% |
| AGGTCCAAAGCTTCATAAGG+TGG | - | Chr6:10600189-10600208 | MsG0680030862.01.T01:CDS | 45.0% | |
| AGTGTTGTCATTGTGGCCAA+TGG | - | Chr6:10600156-10600175 | MsG0680030862.01.T01:CDS | 45.0% | |
| ATGAAAGCAGTAACCTCCAC+CGG | + | Chr6:10601800-10601819 | None:intergenic | 45.0% | |
| GCCACCCATTACAGTCATAA+GGG | - | Chr6:10601188-10601207 | MsG0680030862.01.T01:intron | 45.0% | |
| GGTCCAAAGCTTCATAAGGT+GGG | - | Chr6:10600190-10600209 | MsG0680030862.01.T01:CDS | 45.0% | |
| TACTACTTTATCACCGGTGG+AGG | - | Chr6:10601784-10601803 | MsG0680030862.01.T01:intron | 45.0% | |
| TCATGGAATGAAAGTTGCCG+TGG | - | Chr6:10601816-10601835 | MsG0680030862.01.T01:CDS | 45.0% | |
| TCGCGATGTGGTTCAATTGA+CGG | - | Chr6:10601750-10601769 | MsG0680030862.01.T01:intron | 45.0% | |
| TGCCACCCATTACAGTCATA+AGG | - | Chr6:10601187-10601206 | MsG0680030862.01.T01:intron | 45.0% | |
| ! | ACCCTTATGACTGTAATGGG+TGG | + | Chr6:10601192-10601211 | None:intergenic | 45.0% |
| !! | ACTGTAATGGGTGGCATACT+TGG | + | Chr6:10601183-10601202 | None:intergenic | 45.0% |
| ATTGTGGCCAATGGTGGTCA+TGG | - | Chr6:10600165-10600184 | MsG0680030862.01.T01:CDS | 50.0% | |
| CATAAGGTGGGAGGATCCAA+AGG | - | Chr6:10600202-10600221 | MsG0680030862.01.T01:CDS | 50.0% | |
| CCAAAGCTTCATAAGGTGGG+AGG | - | Chr6:10600193-10600212 | MsG0680030862.01.T01:CDS | 50.0% | |
| CCTCCCACCTTATGAAGCTT+TGG | + | Chr6:10600196-10600215 | None:intergenic | 50.0% | |
| CGATGTGGTTCAATTGACGG+AGG | - | Chr6:10601753-10601772 | MsG0680030862.01.T01:intron | 50.0% | |
| GAAAGAGATGGAGATGGTGC+AGG | + | Chr6:10601862-10601881 | None:intergenic | 50.0% | |
| GCTCTCAACGCGTTTCTTTC+AGG | - | Chr6:10600779-10600798 | MsG0680030862.01.T01:intron | 50.0% | |
| GGGAGGTCCAAAGCTTCATA+AGG | - | Chr6:10600186-10600205 | MsG0680030862.01.T01:CDS | 50.0% | |
| GGTGGAGGTTACTGCTTTCA+TGG | - | Chr6:10601799-10601818 | MsG0680030862.01.T01:intron | 50.0% | |
| GTTGTCATTGTGGCCAATGG+TGG | - | Chr6:10600159-10600178 | MsG0680030862.01.T01:CDS | 50.0% | |
| TTGTGGCCAATGGTGGTCAT+GGG | - | Chr6:10600166-10600185 | MsG0680030862.01.T01:CDS | 50.0% | |
| AGGTGGGAGGATCCAAAGGT+TGG | - | Chr6:10600206-10600225 | MsG0680030862.01.T01:CDS | 55.0% | |
| GACAAGAGGTGGTCGCGATG+TGG | - | Chr6:10601738-10601757 | MsG0680030862.01.T01:intron | 60.0% | |
| GGACCTCCCATGACCACCAT+TGG | + | Chr6:10600175-10600194 | None:intergenic | 60.0% | |
| TGGCCAATGGTGGTCATGGG+AGG | - | Chr6:10600169-10600188 | MsG0680030862.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 10600112 | 10601993 | 10600112 | ID=MsG0680030862.01;Name=MsG0680030862.01 |
| Chr6 | mRNA | 10600112 | 10601993 | 10600112 | ID=MsG0680030862.01.T01;Parent=MsG0680030862.01;Name=MsG0680030862.01.T01;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|175 |
| Chr6 | exon | 10601813 | 10601993 | 10601813 | ID=MsG0680030862.01.T01:exon:8090;Parent=MsG0680030862.01.T01 |
| Chr6 | exon | 10600112 | 10600458 | 10600112 | ID=MsG0680030862.01.T01:exon:8089;Parent=MsG0680030862.01.T01 |
| Chr6 | CDS | 10601813 | 10601993 | 10601813 | ID=MsG0680030862.01.T01:cds;Parent=MsG0680030862.01.T01 |
| Chr6 | CDS | 10600112 | 10600458 | 10600112 | ID=MsG0680030862.01.T01:cds;Parent=MsG0680030862.01.T01 |
| Gene Sequence |
| Protein sequence |
