Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031092.01.T01 | XP_024641605.1 | 83.636 | 385 | 63 | 0 | 24 | 408 | 369 | 753 | 0 | 643 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031092.01.T01 | A0A396HG96 | 84.615 | 377 | 58 | 0 | 30 | 406 | 372 | 748 | 0.0 | 632 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004486.01 | MsG0680031092.01 | 0.808397 | 3.159647e-50 | 1.804734e-47 |
| MsG0680030862.01 | MsG0680031092.01 | 0.806796 | 6.911349e-50 | 3.785884e-47 |
| MsG0680031092.01 | MsG0680034739.01 | 0.803473 | 3.428250e-49 | 1.724311e-46 |
| MsG0380016905.01 | MsG0680031092.01 | 0.822562 | 2.216500e-53 | 1.861944e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031092.01.T01 | MTR_5g028190 | 57.612 | 335 | 138 | 3 | 66 | 397 | 199 | 532 | 2.57e-130 | 385 |
| MsG0680031092.01.T01 | MTR_5g028130 | 55.588 | 340 | 143 | 4 | 66 | 399 | 1 | 338 | 1.13e-123 | 362 |
| MsG0680031092.01.T01 | MTR_5g028450 | 57.756 | 303 | 123 | 3 | 108 | 405 | 1 | 303 | 3.57e-110 | 326 |
| MsG0680031092.01.T01 | MTR_6g017215 | 87.500 | 184 | 23 | 0 | 208 | 391 | 6 | 189 | 1.98e-106 | 314 |
| MsG0680031092.01.T01 | MTR_5g028930 | 44.706 | 340 | 179 | 6 | 67 | 399 | 281 | 618 | 1.05e-85 | 273 |
| MsG0680031092.01.T01 | MTR_2g438740 | 39.429 | 350 | 188 | 8 | 64 | 404 | 245 | 579 | 2.10e-69 | 229 |
| MsG0680031092.01.T01 | MTR_5g091220 | 37.228 | 368 | 222 | 5 | 41 | 401 | 241 | 606 | 1.29e-60 | 207 |
| MsG0680031092.01.T01 | MTR_3g055310 | 42.086 | 278 | 157 | 4 | 106 | 381 | 55 | 330 | 1.31e-60 | 200 |
| MsG0680031092.01.T01 | MTR_3g055310 | 42.086 | 278 | 157 | 4 | 106 | 381 | 118 | 393 | 4.12e-60 | 201 |
| MsG0680031092.01.T01 | MTR_3g055310 | 42.086 | 278 | 157 | 4 | 106 | 381 | 170 | 445 | 2.27e-59 | 200 |
| MsG0680031092.01.T01 | MTR_3g055310 | 42.086 | 278 | 157 | 4 | 106 | 381 | 196 | 471 | 3.23e-59 | 201 |
| MsG0680031092.01.T01 | MTR_3g055310 | 42.086 | 278 | 157 | 4 | 106 | 381 | 198 | 473 | 3.27e-59 | 201 |
| MsG0680031092.01.T01 | MTR_3g055310 | 42.086 | 278 | 157 | 4 | 106 | 381 | 223 | 498 | 4.17e-59 | 201 |
| MsG0680031092.01.T01 | MTR_2g438400 | 35.191 | 341 | 200 | 6 | 58 | 396 | 223 | 544 | 5.19e-57 | 196 |
| MsG0680031092.01.T01 | MTR_2g438440 | 37.801 | 291 | 178 | 3 | 108 | 396 | 396 | 685 | 3.47e-55 | 194 |
| MsG0680031092.01.T01 | MTR_2g438720 | 35.569 | 343 | 197 | 7 | 58 | 396 | 369 | 691 | 3.03e-54 | 191 |
| MsG0680031092.01.T01 | MTR_2g438700 | 35.673 | 342 | 196 | 7 | 58 | 395 | 367 | 688 | 3.08e-54 | 191 |
| MsG0680031092.01.T01 | MTR_5g028110 | 48.947 | 190 | 79 | 1 | 210 | 399 | 4 | 175 | 4.77e-54 | 177 |
| MsG0680031092.01.T01 | MTR_5g028690 | 44.828 | 203 | 107 | 2 | 203 | 400 | 36 | 238 | 4.58e-51 | 172 |
| MsG0680031092.01.T01 | MTR_2g438640 | 33.929 | 336 | 193 | 6 | 58 | 392 | 369 | 676 | 8.06e-49 | 176 |
| MsG0680031092.01.T01 | MTR_2g438760 | 34.138 | 290 | 188 | 3 | 110 | 396 | 272 | 561 | 1.04e-48 | 174 |
| MsG0680031092.01.T01 | MTR_3g455790 | 38.043 | 276 | 167 | 3 | 106 | 379 | 306 | 579 | 4.56e-48 | 173 |
| MsG0680031092.01.T01 | MTR_2g020510 | 30.387 | 362 | 216 | 6 | 65 | 395 | 322 | 678 | 2.28e-46 | 169 |
| MsG0680031092.01.T01 | MTR_2g438640 | 32.836 | 335 | 172 | 6 | 58 | 392 | 369 | 650 | 2.56e-44 | 164 |
| MsG0680031092.01.T01 | MTR_3g452020 | 33.818 | 275 | 178 | 3 | 106 | 378 | 131 | 403 | 6.51e-42 | 153 |
| MsG0680031092.01.T01 | MTR_3g452020 | 33.818 | 275 | 178 | 3 | 106 | 378 | 307 | 579 | 1.38e-40 | 152 |
| MsG0680031092.01.T01 | MTR_3g058570 | 32.441 | 299 | 192 | 3 | 107 | 397 | 83 | 379 | 3.10e-40 | 147 |
| MsG0680031092.01.T01 | MTR_5g028840 | 39.604 | 202 | 117 | 2 | 208 | 404 | 2 | 203 | 1.08e-39 | 141 |
| MsG0680031092.01.T01 | MTR_2g020450 | 32.558 | 344 | 189 | 7 | 65 | 378 | 325 | 655 | 3.27e-39 | 149 |
| MsG0680031092.01.T01 | MTR_2g020470 | 29.358 | 327 | 199 | 6 | 88 | 406 | 369 | 671 | 8.28e-39 | 148 |
| MsG0680031092.01.T01 | MTR_5g028900 | 44.910 | 167 | 76 | 3 | 209 | 371 | 3 | 157 | 1.27e-36 | 131 |
| MsG0680031092.01.T01 | MTR_5g085350 | 31.392 | 309 | 202 | 6 | 109 | 409 | 425 | 731 | 6.66e-35 | 137 |
| MsG0680031092.01.T01 | MTR_5g085350 | 31.392 | 309 | 202 | 6 | 109 | 409 | 438 | 744 | 7.51e-35 | 137 |
| MsG0680031092.01.T01 | MTR_5g085340 | 31.667 | 300 | 186 | 6 | 109 | 395 | 444 | 737 | 2.07e-33 | 132 |
| MsG0680031092.01.T01 | MTR_5g085360 | 29.249 | 253 | 166 | 4 | 131 | 381 | 473 | 714 | 4.45e-32 | 129 |
| MsG0680031092.01.T01 | MTR_2g017930 | 32.573 | 307 | 195 | 5 | 104 | 406 | 355 | 653 | 3.83e-31 | 125 |
| MsG0680031092.01.T01 | MTR_2g438640 | 37.297 | 185 | 106 | 2 | 208 | 392 | 399 | 573 | 7.19e-30 | 122 |
| MsG0680031092.01.T01 | MTR_5g028830 | 46.853 | 143 | 73 | 3 | 67 | 207 | 147 | 288 | 1.24e-28 | 114 |
| MsG0680031092.01.T01 | MTR_3g050500 | 27.213 | 305 | 195 | 6 | 107 | 394 | 427 | 721 | 3.05e-26 | 111 |
| MsG0680031092.01.T01 | MTR_3g051060 | 25.743 | 303 | 193 | 6 | 109 | 392 | 435 | 724 | 4.50e-26 | 111 |
| MsG0680031092.01.T01 | MTR_1g113820 | 28.783 | 337 | 218 | 10 | 81 | 399 | 248 | 580 | 2.86e-25 | 108 |
| MsG0680031092.01.T01 | MTR_5g028920 | 42.466 | 146 | 78 | 3 | 67 | 210 | 86 | 227 | 2.84e-22 | 95.5 |
| MsG0680031092.01.T01 | MTR_2g438470 | 40.602 | 133 | 77 | 2 | 153 | 284 | 366 | 497 | 8.22e-20 | 91.7 |
| MsG0680031092.01.T01 | MTR_1g113760 | 26.370 | 292 | 206 | 7 | 99 | 383 | 231 | 520 | 3.96e-18 | 86.7 |
| MsG0680031092.01.T01 | MTR_1g113730 | 27.239 | 268 | 184 | 6 | 81 | 345 | 25 | 284 | 2.89e-16 | 80.1 |
| MsG0680031092.01.T01 | MTR_2g438580 | 38.554 | 83 | 50 | 1 | 222 | 304 | 2 | 83 | 6.41e-14 | 67.4 |
| MsG0680031092.01.T01 | MTR_6g016185 | 25.000 | 212 | 138 | 6 | 120 | 330 | 6 | 197 | 7.55e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031092.01.T01 | AT3G18670 | 40.909 | 330 | 190 | 5 | 66 | 392 | 252 | 579 | 7.11e-78 | 252 |
| MsG0680031092.01.T01 | AT3G18670 | 40.909 | 330 | 190 | 5 | 66 | 392 | 307 | 634 | 2.45e-77 | 252 |
| MsG0680031092.01.T01 | AT5G35810 | 38.272 | 324 | 181 | 6 | 92 | 401 | 18 | 336 | 1.82e-65 | 213 |
| MsG0680031092.01.T01 | AT5G04700 | 38.728 | 346 | 205 | 6 | 66 | 406 | 323 | 666 | 6.07e-63 | 214 |
| MsG0680031092.01.T01 | AT5G04690 | 37.088 | 364 | 200 | 8 | 44 | 396 | 266 | 611 | 5.15e-62 | 211 |
| MsG0680031092.01.T01 | AT5G04690 | 37.363 | 364 | 197 | 8 | 39 | 396 | 293 | 631 | 6.67e-62 | 211 |
| MsG0680031092.01.T01 | AT5G04690 | 37.363 | 364 | 197 | 8 | 39 | 396 | 307 | 645 | 8.48e-62 | 211 |
| MsG0680031092.01.T01 | AT5G04730 | 35.127 | 353 | 223 | 5 | 60 | 407 | 249 | 600 | 2.57e-59 | 203 |
| MsG0680031092.01.T01 | AT5G04680 | 35.569 | 343 | 207 | 5 | 66 | 396 | 187 | 527 | 6.87e-57 | 196 |
| MsG0680031092.01.T01 | AT5G04680 | 35.569 | 343 | 207 | 5 | 66 | 396 | 296 | 636 | 4.33e-56 | 196 |
| MsG0680031092.01.T01 | AT5G04680 | 35.569 | 343 | 207 | 5 | 66 | 396 | 310 | 650 | 5.34e-56 | 196 |
| MsG0680031092.01.T01 | AT5G04680 | 35.569 | 343 | 207 | 5 | 66 | 396 | 339 | 679 | 6.11e-56 | 196 |
| MsG0680031092.01.T01 | AT3G54065 | 45.977 | 174 | 88 | 2 | 192 | 359 | 6 | 179 | 4.89e-45 | 156 |
| MsG0680031092.01.T01 | AT5G04700 | 33.793 | 145 | 92 | 3 | 66 | 208 | 323 | 465 | 2.78e-12 | 68.6 |
Find 52 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGAACTTCAATGGTTTA+AGG | 0.248534 | 6:-14190157 | MsG0680031092.01.T01:intron |
| CTACACCTCGTAGCTGAATT+AGG | 0.263481 | 6:-14190228 | MsG0680031092.01.T01:CDS |
| GCGGCAGCTTTCACTGTTCC+AGG | 0.293026 | 6:-14189518 | MsG0680031092.01.T01:CDS |
| CCTCCAACAATGTCATGTTT+TGG | 0.324651 | 6:-14190713 | MsG0680031092.01.T01:CDS |
| ATTTGTCCATGCCCCATAAA+AGG | 0.324779 | 6:+14190373 | None:intergenic |
| TCCTTTCCACAGGATGAAAA+AGG | 0.336728 | 6:-14189123 | MsG0680031092.01.T01:CDS |
| ATGTTACAGGCAGCCAAGTA+TGG | 0.360763 | 6:-14190438 | MsG0680031092.01.T01:CDS |
| GGAGGAAACAATCAAGATAA+AGG | 0.363653 | 6:-14189497 | MsG0680031092.01.T01:CDS |
| CCTCCAACAATGTCATGTTT+TGG | 0.365616 | 6:-14190836 | MsG0680031092.01.T01:CDS |
| TTGCCAACTAAGTTATTGTT+TGG | 0.379270 | 6:-14189332 | MsG0680031092.01.T01:CDS |
| TTATCTTGATTGTTTCCTCC+TGG | 0.391280 | 6:+14189500 | None:intergenic |
| GTGAACATGAACACTAATAT+TGG | 0.402664 | 6:+14189191 | None:intergenic |
| AAACTCTATGATTCCATACT+TGG | 0.406925 | 6:+14190425 | None:intergenic |
| AAATGCAAATAGAACTTCAA+TGG | 0.410650 | 6:-14190164 | MsG0680031092.01.T01:CDS |
| AGTACACGATGCTATGTTAC+AGG | 0.422070 | 6:-14190451 | MsG0680031092.01.T01:CDS |
| AGCAAGTTCTTTCACAATTG+TGG | 0.429736 | 6:-14189567 | MsG0680031092.01.T01:CDS |
| GCAAGTTCTTTCACAATTGT+GGG | 0.431704 | 6:-14189566 | MsG0680031092.01.T01:CDS |
| TGATCGAATACCACGATAAG+AGG | 0.436776 | 6:+14190200 | None:intergenic |
| TGCACTTGCTCTCATGCTAA+AGG | 0.442272 | 6:-14189258 | MsG0680031092.01.T01:CDS |
| CATCATTACCATCATGTTTG+CGG | 0.451029 | 6:-14189537 | MsG0680031092.01.T01:CDS |
| GAATCTCACTTACTAGGTAA+TGG | 0.451718 | 6:+14190535 | None:intergenic |
| TTTCAACTGATCAAGCATAT+AGG | 0.453733 | 6:-14190797 | MsG0680031092.01.T01:CDS |
| AGACCAAACAATAACTTAGT+TGG | 0.456630 | 6:+14189329 | None:intergenic |
| TCCATGCCCCATAAAAGGTC+AGG | 0.467009 | 6:+14190378 | None:intergenic |
| CCTCAGCATAACGCGAAGTA+AGG | 0.471522 | 6:+14189372 | None:intergenic |
| CAGATATTAAGAAGATATAC+AGG | 0.475005 | 6:-14190569 | MsG0680031092.01.T01:CDS |
| GCACTTGCTCTCATGCTAAA+GGG | 0.482631 | 6:-14189257 | MsG0680031092.01.T01:CDS |
| CGACCAAAACATGACATTGT+TGG | 0.482795 | 6:+14190710 | None:intergenic |
| CGACCAAAACATGACATTGT+TGG | 0.482795 | 6:+14190833 | None:intergenic |
| CTGTGAAATCTCCTTTCCAC+AGG | 0.496789 | 6:-14189133 | MsG0680031092.01.T01:CDS |
| TTAGCTTCCGTGCACATTGG+AGG | 0.530348 | 6:+14189677 | None:intergenic |
| TGTGAACGAAGGTCGACAAT+GGG | 0.536985 | 6:-14189600 | MsG0680031092.01.T01:CDS |
| CAGAATCAGAGTTACATCAA+TGG | 0.538465 | 6:-14190476 | MsG0680031092.01.T01:CDS |
| AAACTCGTATACGAGATAGA+AGG | 0.551033 | 6:-14190297 | MsG0680031092.01.T01:CDS |
| CCAAAACATGACATTGTTGG+AGG | 0.561466 | 6:+14190713 | None:intergenic |
| CCAAAACATGACATTGTTGG+AGG | 0.571937 | 6:+14190836 | None:intergenic |
| CGAATACCACGATAAGAGGA+AGG | 0.572454 | 6:+14190204 | None:intergenic |
| ATCTTAGAATCTCACTTACT+AGG | 0.572899 | 6:+14190529 | None:intergenic |
| ATTGTCGACCTTCGTTCACA+AGG | 0.576580 | 6:+14189603 | None:intergenic |
| TTGTGAACGAAGGTCGACAA+TGG | 0.579620 | 6:-14189601 | MsG0680031092.01.T01:CDS |
| GAAAGCTGCCGCAAACATGA+TGG | 0.582954 | 6:+14189529 | None:intergenic |
| CCTTACTTCGCGTTATGCTG+AGG | 0.596647 | 6:-14189372 | MsG0680031092.01.T01:CDS |
| GGCATGGACAAATACAAAAG+AGG | 0.600750 | 6:-14190363 | MsG0680031092.01.T01:CDS |
| TTAGGCCCTTCCTCTTATCG+TGG | 0.622324 | 6:-14190210 | MsG0680031092.01.T01:CDS |
| CATTGTGCCTCCAATGTGCA+CGG | 0.624240 | 6:-14189684 | MsG0680031092.01.T01:CDS |
| TCATGCTAAAGGGATATCGA+TGG | 0.624548 | 6:-14189247 | MsG0680031092.01.T01:CDS |
| TGATGTAACTCTGATTCTGA+TGG | 0.626888 | 6:+14190480 | None:intergenic |
| TTCACGAGGTGTTAAACCGT+CGG | 0.642242 | 6:+14189649 | None:intergenic |
| CATGAGCACCTTGTGAACGA+AGG | 0.663818 | 6:-14189611 | MsG0680031092.01.T01:CDS |
| GAATACCACGATAAGAGGAA+GGG | 0.674912 | 6:+14190205 | None:intergenic |
| GCAGCTTTCACTGTTCCAGG+AGG | 0.688478 | 6:-14189515 | MsG0680031092.01.T01:CDS |
| AAGGGCCTAATTCAGCTACG+AGG | 0.773310 | 6:+14190223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATGATTTAAGAATAA+TGG | + | Chr6:14189836-14189855 | None:intergenic | 10.0% |
| !! | TAATATGATTTAAGAATAAT+GGG | + | Chr6:14189835-14189854 | None:intergenic | 10.0% |
| !! | AATTAGTTAATCAATTTACA+GGG | + | Chr6:14190225-14190244 | None:intergenic | 15.0% |
| !! | TAATTAGTTAATCAATTTAC+AGG | + | Chr6:14190226-14190245 | None:intergenic | 15.0% |
| !!! | ATTATTTTCAAATATGTCTT+TGG | + | Chr6:14189703-14189722 | None:intergenic | 15.0% |
| !!! | CATCAGTTTTAATGTTTATT+GGG | - | Chr6:14190557-14190576 | MsG0680031092.01.T01:CDS | 20.0% |
| !!! | TCATCAGTTTTAATGTTTAT+TGG | - | Chr6:14190556-14190575 | MsG0680031092.01.T01:CDS | 20.0% |
| !!! | TTTTTTGTAAATAATTCACG+AGG | + | Chr6:14190322-14190341 | None:intergenic | 20.0% |
| ! | AAATGCAAATAGAACTTCAA+TGG | - | Chr6:14189790-14189809 | MsG0680031092.01.T01:intron | 25.0% |
| ! | AACTAATTATTACTCCATAC+AGG | - | Chr6:14190237-14190256 | MsG0680031092.01.T01:CDS | 25.0% |
| ! | AATAGAACTTCAATGGTTTA+AGG | - | Chr6:14189797-14189816 | MsG0680031092.01.T01:intron | 25.0% |
| ! | ACAAATAATCTATGCAAATG+AGG | + | Chr6:14189341-14189360 | None:intergenic | 25.0% |
| ! | CAAATAATCTATGCAAATGA+GGG | + | Chr6:14189340-14189359 | None:intergenic | 25.0% |
| ! | CAGATATTAAGAAGATATAC+AGG | - | Chr6:14189385-14189404 | MsG0680031092.01.T01:CDS | 25.0% |
| !! | GCACTTTATAACTTTTGTTA+CGG | + | Chr6:14189218-14189237 | None:intergenic | 25.0% |
| !! | GCATTTTTACCTAAAAAGAT+AGG | + | Chr6:14190487-14190506 | None:intergenic | 25.0% |
| !! | TGCATTTTCTCTCTTTATAA+TGG | - | Chr6:14190504-14190523 | MsG0680031092.01.T01:CDS | 25.0% |
| AAACTCTATGATTCCATACT+TGG | + | Chr6:14189532-14189551 | None:intergenic | 30.0% | |
| AGACCAAACAATAACTTAGT+TGG | + | Chr6:14190628-14190647 | None:intergenic | 30.0% | |
| ATCTTAGAATCTCACTTACT+AGG | + | Chr6:14189428-14189447 | None:intergenic | 30.0% | |
| GTGAACATGAACACTAATAT+TGG | + | Chr6:14190766-14190785 | None:intergenic | 30.0% | |
| TCTATGTTGATGTTACCATA+TGG | + | Chr6:14190168-14190187 | None:intergenic | 30.0% | |
| TTCTTAATATCTGCAAGCAT+AGG | + | Chr6:14189378-14189397 | None:intergenic | 30.0% | |
| TTGCCAACTAAGTTATTGTT+TGG | - | Chr6:14190622-14190641 | MsG0680031092.01.T01:intron | 30.0% | |
| TTTCAACTGATCAAGCATAT+AGG | - | Chr6:14189157-14189176 | MsG0680031092.01.T01:CDS | 30.0% | |
| ! | AAAGGCTTACCTATCTTTTT+AGG | - | Chr6:14190475-14190494 | MsG0680031092.01.T01:CDS | 30.0% |
| ! | AAGAGATCATAACTCTTTTG+CGG | + | Chr6:14190143-14190162 | None:intergenic | 30.0% |
| ! | ATTCACAATTTTCTTGTCTG+TGG | - | Chr6:14190648-14190667 | MsG0680031092.01.T01:intron | 30.0% |
| ! | TGGATGTTTTCAACTCTTTT+TGG | + | Chr6:14189683-14189702 | None:intergenic | 30.0% |
| AAACTCGTATACGAGATAGA+AGG | - | Chr6:14189657-14189676 | MsG0680031092.01.T01:CDS | 35.0% | |
| AACAGAAAGGCTGTTAAACA+TGG | + | Chr6:14189867-14189886 | None:intergenic | 35.0% | |
| AGATAGACAGATGTAAGAGT+GGG | - | Chr6:14190010-14190029 | MsG0680031092.01.T01:intron | 35.0% | |
| AGCAAGTTCTTTCACAATTG+TGG | - | Chr6:14190387-14190406 | MsG0680031092.01.T01:CDS | 35.0% | |
| ATATCATACTTGCAGACAGT+TGG | + | Chr6:14189926-14189945 | None:intergenic | 35.0% | |
| ATGTTTAACAGCCTTTCTGT+TGG | - | Chr6:14189866-14189885 | MsG0680031092.01.T01:intron | 35.0% | |
| CAGAATCAGAGTTACATCAA+TGG | - | Chr6:14189478-14189497 | MsG0680031092.01.T01:CDS | 35.0% | |
| CATCATTACCATCATGTTTG+CGG | - | Chr6:14190417-14190436 | MsG0680031092.01.T01:CDS | 35.0% | |
| GAATCTCACTTACTAGGTAA+TGG | + | Chr6:14189422-14189441 | None:intergenic | 35.0% | |
| GCAAGTTCTTTCACAATTGT+GGG | - | Chr6:14190388-14190407 | MsG0680031092.01.T01:CDS | 35.0% | |
| GGAGGAAACAATCAAGATAA+AGG | - | Chr6:14190457-14190476 | MsG0680031092.01.T01:CDS | 35.0% | |
| GTTACCTTGTAAGTGTATCA+TGG | - | Chr6:14189294-14189313 | MsG0680031092.01.T01:CDS | 35.0% | |
| GTTATGATCTCTTTGCCATA+TGG | - | Chr6:14190150-14190169 | MsG0680031092.01.T01:intron | 35.0% | |
| TAGATAGACAGATGTAAGAG+TGG | - | Chr6:14190009-14190028 | MsG0680031092.01.T01:intron | 35.0% | |
| TGATGTAACTCTGATTCTGA+TGG | + | Chr6:14189477-14189496 | None:intergenic | 35.0% | |
| TGTCTGCAAGTATGATATAC+TGG | - | Chr6:14189928-14189947 | MsG0680031092.01.T01:intron | 35.0% | |
| TGTTTAACAGCCTTTCTGTT+GGG | - | Chr6:14189867-14189886 | MsG0680031092.01.T01:intron | 35.0% | |
| TTATCTTGATTGTTTCCTCC+TGG | + | Chr6:14190457-14190476 | None:intergenic | 35.0% | |
| ! | AAGCAAATCCTGACCTTTTA+TGG | - | Chr6:14189568-14189587 | MsG0680031092.01.T01:CDS | 35.0% |
| ! | AGCAAATCCTGACCTTTTAT+GGG | - | Chr6:14189569-14189588 | MsG0680031092.01.T01:CDS | 35.0% |
| !! | TCTTATCCTTTTTCATCCTG+TGG | + | Chr6:14190840-14190859 | None:intergenic | 35.0% |
| !!! | TCATGTTTTGGTCGATATGT+TGG | - | Chr6:14189130-14189149 | MsG0680031092.01.T01:CDS | 35.0% |
| AGCTCCATGATACACTTACA+AGG | + | Chr6:14189301-14189320 | None:intergenic | 40.0% | |
| AGTACACGATGCTATGTTAC+AGG | - | Chr6:14189503-14189522 | MsG0680031092.01.T01:CDS | 40.0% | |
| ATTTGTCCATGCCCCATAAA+AGG | + | Chr6:14189584-14189603 | None:intergenic | 40.0% | |
| CCAAAACATGACATTGTTGG+AGG | + | Chr6:14189121-14189140 | None:intergenic | 40.0% | |
| CGACCAAAACATGACATTGT+TGG | + | Chr6:14189124-14189143 | None:intergenic | 40.0% | |
| CTCTAATTAGCCCAACAGAA+AGG | + | Chr6:14189880-14189899 | None:intergenic | 40.0% | |
| GAACGTACAATAACCAATGC+AGG | + | Chr6:14190060-14190079 | None:intergenic | 40.0% | |
| GAATACCACGATAAGAGGAA+GGG | + | Chr6:14189752-14189771 | None:intergenic | 40.0% | |
| GGCATGGACAAATACAAAAG+AGG | - | Chr6:14189591-14189610 | MsG0680031092.01.T01:CDS | 40.0% | |
| TCATGCTAAAGGGATATCGA+TGG | - | Chr6:14190707-14190726 | MsG0680031092.01.T01:CDS | 40.0% | |
| TCCTTTCCACAGGATGAAAA+AGG | - | Chr6:14190831-14190850 | MsG0680031092.01.T01:CDS | 40.0% | |
| TCTTCTTCCCATGTAGATGT+GGG | - | Chr6:14190084-14190103 | MsG0680031092.01.T01:intron | 40.0% | |
| TGATCGAATACCACGATAAG+AGG | + | Chr6:14189757-14189776 | None:intergenic | 40.0% | |
| TTCTTCTTCCCATGTAGATG+TGG | - | Chr6:14190083-14190102 | MsG0680031092.01.T01:intron | 40.0% | |
| TTGCGATCAAAATCCTGCAT+TGG | - | Chr6:14190044-14190063 | MsG0680031092.01.T01:intron | 40.0% | |
| ! | AAGTGTGCGAAATCTTTTGC+GGG | - | Chr6:14189190-14189209 | MsG0680031092.01.T01:CDS | 40.0% |
| ! | CAAGTGTGCGAAATCTTTTG+CGG | - | Chr6:14189189-14189208 | MsG0680031092.01.T01:CDS | 40.0% |
| ! | CCTCCAACAATGTCATGTTT+TGG | - | Chr6:14189118-14189137 | MsG0680031092.01.T01:CDS | 40.0% |
| ! | CTTTTGCGGAAATGTTCTGA+GGG | + | Chr6:14190129-14190148 | None:intergenic | 40.0% |
| ! | GCAAATCCTGACCTTTTATG+GGG | - | Chr6:14189570-14189589 | MsG0680031092.01.T01:CDS | 40.0% |
| ! | GCTCTTACGCATCTTTTTAG+AGG | - | Chr6:14190786-14190805 | MsG0680031092.01.T01:CDS | 40.0% |
| ! | TCTTTTGCGGAAATGTTCTG+AGG | + | Chr6:14190130-14190149 | None:intergenic | 40.0% |
| !! | TCCTTTTTCATCCTGTGGAA+AGG | + | Chr6:14190835-14190854 | None:intergenic | 40.0% |
| !! | TTTTGCGGAAATGTTCTGAG+GGG | + | Chr6:14190128-14190147 | None:intergenic | 40.0% |
| !!! | TTTTTAGCTTCCGTGCACAT+TGG | + | Chr6:14190283-14190302 | None:intergenic | 40.0% |
| AATGCTCTCTACTGCCTGTA+TGG | + | Chr6:14190254-14190273 | None:intergenic | 45.0% | |
| ACGGAAGCTAAAAATGCCGA+CGG | - | Chr6:14190289-14190308 | MsG0680031092.01.T01:CDS | 45.0% | |
| ATGTTACAGGCAGCCAAGTA+TGG | - | Chr6:14189516-14189535 | MsG0680031092.01.T01:CDS | 45.0% | |
| ATTGTCGACCTTCGTTCACA+AGG | + | Chr6:14190354-14190373 | None:intergenic | 45.0% | |
| CGAATACCACGATAAGAGGA+AGG | + | Chr6:14189753-14189772 | None:intergenic | 45.0% | |
| CTACACCTCGTAGCTGAATT+AGG | - | Chr6:14189726-14189745 | MsG0680031092.01.T01:intron | 45.0% | |
| CTGTGAAATCTCCTTTCCAC+AGG | - | Chr6:14190821-14190840 | MsG0680031092.01.T01:CDS | 45.0% | |
| GCACTTGCTCTCATGCTAAA+GGG | - | Chr6:14190697-14190716 | MsG0680031092.01.T01:CDS | 45.0% | |
| GCAGACAGTTGGAGTTAGTT+AGG | + | Chr6:14189915-14189934 | None:intergenic | 45.0% | |
| TGCACTTGCTCTCATGCTAA+AGG | - | Chr6:14190696-14190715 | MsG0680031092.01.T01:CDS | 45.0% | |
| TGTGAACGAAGGTCGACAAT+GGG | - | Chr6:14190354-14190373 | MsG0680031092.01.T01:CDS | 45.0% | |
| TTGTGAACGAAGGTCGACAA+TGG | - | Chr6:14190353-14190372 | MsG0680031092.01.T01:CDS | 45.0% | |
| ! | TTCACGAGGTGTTAAACCGT+CGG | + | Chr6:14190308-14190327 | None:intergenic | 45.0% |
| AAGGGCCTAATTCAGCTACG+AGG | + | Chr6:14189734-14189753 | None:intergenic | 50.0% | |
| AGACCTGCCCACATCTACAT+GGG | + | Chr6:14190094-14190113 | None:intergenic | 50.0% | |
| CATGAGCACCTTGTGAACGA+AGG | - | Chr6:14190343-14190362 | MsG0680031092.01.T01:CDS | 50.0% | |
| CATTGTGCCTCCAATGTGCA+CGG | - | Chr6:14190270-14190289 | MsG0680031092.01.T01:CDS | 50.0% | |
| CCTCAGCATAACGCGAAGTA+AGG | + | Chr6:14190585-14190604 | None:intergenic | 50.0% | |
| CCTTACTTCGCGTTATGCTG+AGG | - | Chr6:14190582-14190601 | MsG0680031092.01.T01:intron | 50.0% | |
| GAAAGCTGCCGCAAACATGA+TGG | + | Chr6:14190428-14190447 | None:intergenic | 50.0% | |
| TCCATGCCCCATAAAAGGTC+AGG | + | Chr6:14189579-14189598 | None:intergenic | 50.0% | |
| TTAGCTTCCGTGCACATTGG+AGG | + | Chr6:14190280-14190299 | None:intergenic | 50.0% | |
| TTAGGCCCTTCCTCTTATCG+TGG | - | Chr6:14189744-14189763 | MsG0680031092.01.T01:intron | 50.0% | |
| ! | TCCTGACCTTTTATGGGGCA+TGG | - | Chr6:14189575-14189594 | MsG0680031092.01.T01:CDS | 50.0% |
| CTTCCCATGTAGATGTGGGC+AGG | - | Chr6:14190088-14190107 | MsG0680031092.01.T01:intron | 55.0% | |
| GAGACCTGCCCACATCTACA+TGG | + | Chr6:14190095-14190114 | None:intergenic | 55.0% | |
| GCAGCTTTCACTGTTCCAGG+AGG | - | Chr6:14190439-14190458 | MsG0680031092.01.T01:CDS | 55.0% | |
| GATGTGGGCAGGTCTCGTTG+AGG | - | Chr6:14190099-14190118 | MsG0680031092.01.T01:intron | 60.0% | |
| GCGGCAGCTTTCACTGTTCC+AGG | - | Chr6:14190436-14190455 | MsG0680031092.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 14189109 | 14190867 | 14189109 | ID=MsG0680031092.01;Name=MsG0680031092.01 |
| Chr6 | mRNA | 14189109 | 14190867 | 14189109 | ID=MsG0680031092.01.T01;Parent=MsG0680031092.01;Name=MsG0680031092.01.T01;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|3|0|410 |
| Chr6 | exon | 14190675 | 14190867 | 14190675 | ID=MsG0680031092.01.T01:exon:9790;Parent=MsG0680031092.01.T01 |
| Chr6 | exon | 14190158 | 14190588 | 14190158 | ID=MsG0680031092.01.T01:exon:9789;Parent=MsG0680031092.01.T01 |
| Chr6 | exon | 14189109 | 14189717 | 14189109 | ID=MsG0680031092.01.T01:exon:9788;Parent=MsG0680031092.01.T01 |
| Chr6 | CDS | 14190675 | 14190867 | 14190675 | ID=MsG0680031092.01.T01:cds;Parent=MsG0680031092.01.T01 |
| Chr6 | CDS | 14190158 | 14190588 | 14190158 | ID=MsG0680031092.01.T01:cds;Parent=MsG0680031092.01.T01 |
| Chr6 | CDS | 14189109 | 14189717 | 14189109 | ID=MsG0680031092.01.T01:cds;Parent=MsG0680031092.01.T01 |
| Gene Sequence |
| Protein sequence |
