AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015944.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015944.01.T01 MTR_3g080190 98.857 525 6 0 1 525 1 525 0.0 1092
MsG0380015944.01.T01 MTR_5g085730 82.016 506 89 2 21 525 12 516 0.0 885
MsG0380015944.01.T01 MTR_5g093590 71.753 485 136 1 22 505 16 500 0.0 747
MsG0380015944.01.T01 MTR_8g099410 61.803 466 176 1 40 505 28 491 0.0 629
MsG0380015944.01.T01 MTR_8g099410 61.803 466 176 1 40 505 28 491 0.0 627
MsG0380015944.01.T01 MTR_4g074960 60.897 468 180 3 39 505 27 492 0.0 598
MsG0380015944.01.T01 MTR_1g037340 50.620 484 227 6 23 503 5 479 1.63e-168 486
MsG0380015944.01.T01 MTR_5g009970 48.408 471 224 6 39 506 40 494 6.40e-154 449
MsG0380015944.01.T01 MTR_5g010000 48.536 478 227 6 36 510 36 497 1.18e-153 449
MsG0380015944.01.T01 MTR_3g080810 48.936 470 229 7 38 505 33 493 1.96e-152 445
MsG0380015944.01.T01 MTR_8g104820 49.362 470 225 8 40 505 30 490 2.04e-152 445
MsG0380015944.01.T01 MTR_3g117500 48.511 470 231 6 40 506 24 485 3.28e-151 442
MsG0380015944.01.T01 MTR_3g105230 46.436 463 232 5 31 493 21 467 1.29e-146 430
MsG0380015944.01.T01 MTR_4g035930 44.491 481 252 6 26 505 1 467 4.65e-145 425
MsG0380015944.01.T01 MTR_4g035955 45.322 481 247 7 26 505 1 466 1.57e-144 424
MsG0380015944.01.T01 MTR_3g023740 45.657 495 245 6 23 509 5 483 1.09e-142 420
MsG0380015944.01.T01 MTR_3g010330 47.122 469 232 7 40 505 25 480 9.79e-140 412
MsG0380015944.01.T01 MTR_4g035975 45.875 497 239 10 25 505 7 489 2.82e-138 409
MsG0380015944.01.T01 MTR_1g088190 46.341 492 220 10 15 503 26 476 1.12e-137 407
MsG0380015944.01.T01 MTR_5g009970 47.430 428 206 6 82 506 9 420 1.76e-133 394
MsG0380015944.01.T01 MTR_3g113720 43.312 471 253 9 41 506 58 519 7.68e-125 375
MsG0380015944.01.T01 MTR_5g009970 45.721 409 203 6 101 506 1 393 3.88e-121 362
MsG0380015944.01.T01 MTR_8g075990 43.220 472 252 10 41 506 64 525 1.20e-119 362
MsG0380015944.01.T01 MTR_2g028480 42.074 511 253 16 40 523 111 605 1.55e-103 324
MsG0380015944.01.T01 MTR_3g082440 39.095 486 260 15 40 502 116 588 1.60e-93 298
MsG0380015944.01.T01 MTR_3g090540 36.111 540 278 18 19 510 68 588 1.07e-92 295
MsG0380015944.01.T01 MTR_5g009970 45.161 341 168 6 169 506 1 325 3.52e-88 275
MsG0380015944.01.T01 MTR_1g088190 44.776 335 144 8 15 347 26 321 7.74e-76 243
MsG0380015944.01.T01 MTR_1g037320 54.658 161 72 1 101 261 1 160 1.87e-46 164
MsG0380015944.01.T01 MTR_1g037320 47.541 122 63 1 382 503 169 289 4.98e-33 127
MsG0380015944.01.T01 MTR_7g108925 47.742 155 80 1 349 503 43 196 1.10e-45 160
MsG0380015944.01.T01 MTR_0393s0050 45.714 140 76 0 349 488 20 159 2.45e-37 136
MsG0380015944.01.T01 MTR_4g128810 27.500 320 155 10 216 502 55 330 9.08e-28 114
MsG0380015944.01.T01 MTR_4g047570 32.174 115 55 3 289 402 2 94 5.53e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015944.01.T01 AT2G32990 75.051 493 113 1 22 504 11 503 0.0 786
MsG0380015944.01.T01 AT1G64390 62.446 466 173 1 40 505 25 488 0.0 623
MsG0380015944.01.T01 AT4G11050 61.242 467 179 1 40 506 26 490 0.0 612
MsG0380015944.01.T01 AT4G11050 61.242 467 179 1 40 506 26 490 0.0 612
MsG0380015944.01.T01 AT4G11050 61.242 467 179 1 40 506 26 490 0.0 609
MsG0380015944.01.T01 AT1G48930 58.584 466 191 2 39 504 29 492 0.0 550
MsG0380015944.01.T01 AT2G44550 51.566 479 223 4 25 503 18 487 2.03e-168 486
MsG0380015944.01.T01 AT2G44540 50.830 482 227 5 22 503 17 488 8.80e-164 474
MsG0380015944.01.T01 AT2G44560 51.458 480 224 5 24 503 18 488 7.78e-162 469
MsG0380015944.01.T01 AT2G44570 48.447 483 240 5 24 505 17 491 2.32e-160 465
MsG0380015944.01.T01 AT1G02800 50.968 465 216 6 40 503 43 496 7.64e-152 444
MsG0380015944.01.T01 AT4G02290 50.000 468 222 7 40 505 52 509 1.04e-151 444
MsG0380015944.01.T01 AT1G70710 47.619 483 243 6 24 505 12 485 1.21e-151 443
MsG0380015944.01.T01 AT4G39010 47.234 470 236 7 40 505 29 490 8.97e-148 433
MsG0380015944.01.T01 AT1G23210 47.752 467 234 6 40 505 28 485 7.43e-147 431
MsG0380015944.01.T01 AT4G23560 47.737 486 234 8 24 506 7 475 1.08e-146 430
MsG0380015944.01.T01 AT4G09740 47.844 487 232 8 24 506 7 475 1.52e-146 429
MsG0380015944.01.T01 AT3G43860 45.530 481 245 6 26 505 19 483 3.93e-142 419
MsG0380015944.01.T01 AT3G43860 45.530 481 245 6 26 505 19 483 3.93e-142 419
MsG0380015944.01.T01 AT1G22880 46.901 484 242 8 24 505 8 478 5.03e-141 416
MsG0380015944.01.T01 AT1G71380 46.201 487 244 10 24 505 5 478 6.07e-139 410
MsG0380015944.01.T01 AT1G19940 47.619 462 232 7 40 500 48 500 3.30e-138 409
MsG0380015944.01.T01 AT1G19940 47.619 462 232 7 40 500 48 500 3.30e-138 409
MsG0380015944.01.T01 AT4G39000 45.895 475 245 7 40 510 25 491 1.58e-136 404
MsG0380015944.01.T01 AT1G75680 47.702 457 229 7 41 496 58 505 1.82e-133 398
MsG0380015944.01.T01 AT4G38990 43.673 490 259 9 25 505 8 489 1.80e-127 381
MsG0380015944.01.T01 AT4G02290 47.420 407 202 7 101 505 1 397 1.90e-118 355
MsG0380015944.01.T01 AT2G44570 45.823 395 205 5 24 417 17 403 4.00e-115 347
MsG0380015944.01.T01 AT1G22880 45.209 407 208 8 101 505 1 394 6.59e-113 340
MsG0380015944.01.T01 AT4G39010 46.448 366 185 6 40 401 29 387 4.98e-110 333
MsG0380015944.01.T01 AT1G19940 45.879 364 192 5 40 402 48 407 1.28e-99 307
MsG0380015944.01.T01 AT5G49720 42.245 490 242 16 40 502 108 583 1.11e-96 306
MsG0380015944.01.T01 AT4G24260 41.104 489 251 15 40 503 108 584 3.21e-87 281
MsG0380015944.01.T01 AT1G65610 35.887 496 283 15 40 513 116 598 4.26e-87 281
MsG0380015944.01.T01 AT4G38990 43.017 358 174 6 25 381 8 336 1.63e-83 263
MsG0380015944.01.T01 AT1G22880 48.476 328 155 7 24 349 8 323 4.86e-83 261
MsG0380015944.01.T01 AT4G24260 39.433 388 203 13 40 402 108 488 2.50e-55 193
MsG0380015944.01.T01 AT4G24260 41.390 331 162 11 40 342 108 434 1.14e-53 188

Find 121 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACAAGTTGATTACATTT+TGG 0.156175 3:-76987781 MsG0380015944.01.T01:CDS
AGAACCAAATCCTAATATTT+TGG 0.167708 3:-76987607 MsG0380015944.01.T01:CDS
CATACAACCAACGTGTTAAT+TGG 0.167826 3:-76991251 MsG0380015944.01.T01:CDS
GAAAATACATTCTTTAAAAT+AGG 0.186741 3:+76987327 None:intergenic
AAATATTAGGATTTGGTTCT+TGG 0.200576 3:+76987610 None:intergenic
ATGTAATGGAAGCAATTAAA+TGG 0.203237 3:-76990945 MsG0380015944.01.T01:CDS
AACTCATGTTAAGTGGATTT+TGG 0.205279 3:+76987757 None:intergenic
ACCTCTATGATGCACCCTTT+TGG 0.242199 3:+76987707 None:intergenic
ATGAGTTACTTAGTGGGATA+TGG 0.273448 3:-76987741 MsG0380015944.01.T01:CDS
GCAGGTGATCATGTGAAATT+TGG 0.274678 3:-76991054 MsG0380015944.01.T01:CDS
TACTTTGAAGCACAACGTTC+TGG 0.276345 3:-76991282 MsG0380015944.01.T01:CDS
ATTGTGCAGTTATTTGAGTT+TGG 0.280930 3:-76989661 MsG0380015944.01.T01:intron
AAAATACATTCTTTAAAATA+GGG 0.283671 3:+76987328 None:intergenic
TTGTGCAGTTATTTGAGTTT+GGG 0.294397 3:-76989660 MsG0380015944.01.T01:intron
ACCTCTGCCCACAACACATT+TGG 0.300565 3:+76990889 None:intergenic
CCAACCAAAATATTAGGATT+TGG 0.302553 3:+76987603 None:intergenic
ATATATAGAGAGTATTTAAA+AGG 0.306750 3:+76987407 None:intergenic
GTTAATTGGCGTCATCATTC+TGG 0.309546 3:-76991237 MsG0380015944.01.T01:CDS
AAAGCTCCAACCAAAATATT+AGG 0.310755 3:+76987597 None:intergenic
CAGCTGCTTCCATTGTGTTT+AGG 0.320538 3:-76990409 MsG0380015944.01.T01:CDS
TCAAAATTGTCTAGATTATC+AGG 0.328331 3:+76987564 None:intergenic
AGAGAGAATAAAGGGTTCAT+AGG 0.328810 3:-76987666 MsG0380015944.01.T01:CDS
ATTTCTAATGCTCATACATT+TGG 0.331259 3:-76989493 MsG0380015944.01.T01:CDS
GCACACAAGGGTATGATAAT+TGG 0.347724 3:-76987641 MsG0380015944.01.T01:CDS
CAATTAACACGTTGGTTGTA+TGG 0.354636 3:+76991252 None:intergenic
CATGGAGTGCTATTGAGTTT+AGG 0.363527 3:-76990999 MsG0380015944.01.T01:CDS
GTGACAATGATGTTTAAATC+TGG 0.367337 3:+76991386 None:intergenic
GCTCATACATTTGGTGGTAT+TGG 0.372035 3:-76989484 MsG0380015944.01.T01:CDS
TAAATTTGTTAATATTATAG+TGG 0.388889 3:-76987286 None:intergenic
TTTCAGGTGGATTTGGTTGG+AGG 0.401221 3:-76991087 MsG0380015944.01.T01:intron
TGTAATGGAAGCAATTAAAT+GGG 0.406228 3:-76990944 MsG0380015944.01.T01:CDS
CCTCTGCCCACAACACATTT+GGG 0.407042 3:+76990890 None:intergenic
CAAAAGATCAATTGCCAAGA+TGG 0.412945 3:-76987840 MsG0380015944.01.T01:CDS
GTATCATATAGAGAGAATAA+AGG 0.414088 3:-76987675 MsG0380015944.01.T01:CDS
CTGGACGTTGCCAACAATAA+TGG 0.415828 3:+76990519 None:intergenic
CTTGAGGTTGTCATGTCCTC+TGG 0.417866 3:+76990500 None:intergenic
GTCAAAATATTCTTGTTTGT+CGG 0.429086 3:+76989522 None:intergenic
AAGATAGATGAGAAGAATCC+AGG 0.433832 3:-76990467 MsG0380015944.01.T01:CDS
TTCAGGTGGATTTGGTTGGA+GGG 0.437613 3:-76991086 MsG0380015944.01.T01:intron
TCATGCAAAGAGGGAATAGA+AGG 0.439518 3:-76987464 MsG0380015944.01.T01:CDS
ATCCCAGCTGAATTCTGTTA+TGG 0.440268 3:+76989456 None:intergenic
ACTTTGAAGCACAACGTTCT+GGG 0.441438 3:-76991281 MsG0380015944.01.T01:CDS
GGGAAATATGATGGAAGTGT+TGG 0.451425 3:-76989625 MsG0380015944.01.T01:CDS
TATCATATAGAGAGAATAAA+GGG 0.456692 3:-76987674 MsG0380015944.01.T01:CDS
TCTAATGCTCATACATTTGG+TGG 0.457457 3:-76989490 MsG0380015944.01.T01:CDS
AGCTGGGATGTTAAGTATGC+TGG 0.465855 3:-76989442 MsG0380015944.01.T01:CDS
ATGGGCCTAAGTACCCCAAA+AGG 0.469761 3:-76987722 MsG0380015944.01.T01:CDS
ATACATTTGGTGGTATTGGT+TGG 0.472675 3:-76989480 MsG0380015944.01.T01:CDS
TACTAGCCCAAATGTGTTGT+GGG 0.473525 3:-76990896 MsG0380015944.01.T01:CDS
AGGCAAGAAATTGTTGAAGC+TGG 0.479140 3:-76990979 MsG0380015944.01.T01:CDS
CCCAAATGTGTTGTGGGCAG+AGG 0.481112 3:-76990890 MsG0380015944.01.T01:intron
ACTAAGTAACTCATGTTAAG+TGG 0.486492 3:+76987750 None:intergenic
GGTCCATAACAGAATTCAGC+TGG 0.486609 3:-76989459 MsG0380015944.01.T01:CDS
CAAAATTGAGAATTTCATCA+TGG 0.490347 3:+76987808 None:intergenic
ACTTAACATGAGTTACTTAG+TGG 0.491572 3:-76987748 MsG0380015944.01.T01:CDS
TGAGTTACTTAGTGGGATAT+GGG 0.492298 3:-76987740 MsG0380015944.01.T01:CDS
TTGGTTGGAGCTTTGGTAGG+AGG 0.493848 3:-76987588 MsG0380015944.01.T01:CDS
TGGAGAAACTGCTGCAGCTA+TGG 0.496286 3:-76990432 MsG0380015944.01.T01:CDS
CATCATTCTGGTCTTACAGA+TGG 0.500607 3:-76991225 MsG0380015944.01.T01:CDS
GAAGAATCCAGGTTCAGATC+TGG 0.506230 3:-76990456 MsG0380015944.01.T01:CDS
ATTGTTGAAGCTGGTGAACT+TGG 0.513050 3:-76990970 MsG0380015944.01.T01:CDS
TTACCTTTGATGCTAAAACT+TGG 0.515672 3:+76989416 None:intergenic
CTTACAGATGGTTTAGAACA+AGG 0.516101 3:-76991213 MsG0380015944.01.T01:CDS
ATAATCAAAAGATTGTGTTA+TGG 0.516983 3:+76991332 None:intergenic
CATGGCCCACAATCCCATCT+TGG 0.517673 3:+76987826 None:intergenic
AGCTACTATGCGTCGGTGAG+TGG 0.518978 3:-76989592 MsG0380015944.01.T01:CDS
GAGAGAATAAAGGGTTCATA+GGG 0.518983 3:-76987665 MsG0380015944.01.T01:CDS
TTGCAAAATTCATGCAAAGA+GGG 0.519154 3:-76987473 MsG0380015944.01.T01:CDS
AAAAGATCAATTGCCAAGAT+GGG 0.520703 3:-76987839 MsG0380015944.01.T01:CDS
AATTGCCAAGATGGGATTGT+GGG 0.521792 3:-76987831 MsG0380015944.01.T01:CDS
ATATAATACTGCACCATTAG+TGG 0.523912 3:-76987502 MsG0380015944.01.T01:CDS
AAATACAGAGGGAAATATGA+TGG 0.525154 3:-76989634 MsG0380015944.01.T01:CDS
GAGACACAGACCATTATTGT+TGG 0.526224 3:-76990529 MsG0380015944.01.T01:CDS
CAAGGGTATGATAATTGGTA+TGG 0.527762 3:-76987636 MsG0380015944.01.T01:CDS
TGTGCAGTTATTTGAGTTTG+GGG 0.529149 3:-76989659 MsG0380015944.01.T01:intron
TGTGAAATTTGGTTTACCAA+TGG 0.529922 3:-76991043 MsG0380015944.01.T01:CDS
AAATACATTCTTTAAAATAG+GGG 0.535983 3:+76987329 None:intergenic
AAAATATTCTTGTTTGTCGG+TGG 0.547238 3:+76989525 None:intergenic
TTTGCAAAATTCATGCAAAG+AGG 0.550554 3:-76987474 MsG0380015944.01.T01:CDS
GATACATGGATGAGTTATTG+TGG 0.552659 3:-76989570 MsG0380015944.01.T01:CDS
TATAATACTGCACCATTAGT+GGG 0.560164 3:-76987501 MsG0380015944.01.T01:CDS
GTTGGAGGGTACTATGATGC+AGG 0.563279 3:-76991072 MsG0380015944.01.T01:CDS
TGACAATGATGTTTAAATCT+GGG 0.565379 3:+76991387 None:intergenic
AATACATTCTTTAAAATAGG+GGG 0.565425 3:+76987330 None:intergenic
TGCGTCGGTGAGTGGATACA+TGG 0.568122 3:-76989584 MsG0380015944.01.T01:CDS
AATGTAATCAACTTGTGACT+TGG 0.573884 3:+76987785 None:intergenic
GGGTTCATAGGGTGCACACA+AGG 0.574402 3:-76987654 MsG0380015944.01.T01:CDS
ATACTAGCCCAAATGTGTTG+TGG 0.577675 3:-76990897 MsG0380015944.01.T01:CDS
TCTCCAGCCAGATCTGAACC+TGG 0.578429 3:+76990449 None:intergenic
ATACATGGATGAGTTATTGT+GGG 0.579757 3:-76989569 MsG0380015944.01.T01:CDS
TTACTGTCACAATGTTGTCA+TGG 0.583673 3:-76991017 MsG0380015944.01.T01:CDS
TACAGATGGTTTAGAACAAG+GGG 0.583836 3:-76991211 MsG0380015944.01.T01:intron
GCAAAGAGGGAATAGAAGGT+TGG 0.590189 3:-76987460 MsG0380015944.01.T01:CDS
TATCTTAAAAGCTTGTCTTG+AGG 0.590517 3:+76990484 None:intergenic
AGTTATTGTGGGGAGCTATG+TGG 0.591433 3:-76989558 MsG0380015944.01.T01:CDS
AATCCAGGTTCAGATCTGGC+TGG 0.593866 3:-76990452 MsG0380015944.01.T01:CDS
CTTAACATGAGTTACTTAGT+GGG 0.597597 3:-76987747 MsG0380015944.01.T01:CDS
ATTCTCTCTATATGATACAA+TGG 0.597953 3:+76987680 None:intergenic
CAATTGCCAAGATGGGATTG+TGG 0.600603 3:-76987832 MsG0380015944.01.T01:CDS
ATTGTGACAGTAAATGCCAT+TGG 0.602158 3:+76991027 None:intergenic
TGGTGAACTTGGTCATGTAA+TGG 0.602665 3:-76990959 MsG0380015944.01.T01:CDS
TGGGCCTAAGTACCCCAAAA+GGG 0.608177 3:-76987721 MsG0380015944.01.T01:CDS
CTTACATAGAGTAATCCAGC+TGG 0.611840 3:+76987942 None:intergenic
TTACAGATGGTTTAGAACAA+GGG 0.612255 3:-76991212 MsG0380015944.01.T01:CDS
AATGTGGAAAGAACACCAGC+TGG 0.616199 3:-76987957 MsG0380015944.01.T01:CDS
CCCAAAAGGGTGCATCATAG+AGG 0.625621 3:-76987708 MsG0380015944.01.T01:CDS
AGTTTGGGGACAAATACAGA+GGG 0.630720 3:-76989645 MsG0380015944.01.T01:CDS
TTACTACTACCTGCTGAGCA+TGG 0.641231 3:+76990351 None:intergenic
GTCCATAACAGAATTCAGCT+GGG 0.643895 3:-76989458 MsG0380015944.01.T01:CDS
GATGACGCCAATTAACACGT+TGG 0.651812 3:+76991244 None:intergenic
TTATTGTTGGCAACGTCCAG+AGG 0.652974 3:-76990516 MsG0380015944.01.T01:CDS
AGTGAAGAGCTACTATGCGT+CGG 0.655502 3:-76989599 MsG0380015944.01.T01:CDS
AAAAGTAGCTGAGAATAATG+TGG 0.661774 3:+76990377 None:intergenic
GAGTTTGGGGACAAATACAG+AGG 0.667296 3:-76989646 MsG0380015944.01.T01:CDS
GAACAATTATGTGCAAACTG+AGG 0.668349 3:-76987532 MsG0380015944.01.T01:CDS
GTAATGGAAGCAATTAAATG+GGG 0.669304 3:-76990943 MsG0380015944.01.T01:CDS
AAACAATGGCAGCAGCAATG+TGG 0.670730 3:-76987973 MsG0380015944.01.T01:CDS
GGTTCATAGGGTGCACACAA+GGG 0.675227 3:-76987653 MsG0380015944.01.T01:CDS
TTGAAGCACAACGTTCTGGG+AGG 0.691689 3:-76991278 MsG0380015944.01.T01:CDS
GATTACTCTATGTAAGACAG+TGG 0.704386 3:-76987935 MsG0380015944.01.T01:CDS
TACATGGATGAGTTATTGTG+GGG 0.766782 3:-76989568 MsG0380015944.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAATAATTTATTATGTT+TGG - Chr3:76988503-76988522 MsG0380015944.01.T01:intron 10.0%
!!! AAAATACATTCTTTAAAATA+GGG + Chr3:76991442-76991461 None:intergenic 10.0%
!!! TACTAATATTTTTACTTAAT+TGG + Chr3:76989005-76989024 None:intergenic 10.0%
!! AAAATACAAACAAAACAAAA+GGG - Chr3:76989372-76989391 MsG0380015944.01.T01:intron 15.0%
!! TAAAATACAAACAAAACAAA+AGG - Chr3:76989371-76989390 MsG0380015944.01.T01:intron 15.0%
!! TATTAAAGTATGTAAAACAA+GGG - Chr3:76988581-76988600 MsG0380015944.01.T01:intron 15.0%
!!! AAAGTTGAGATTTTTATTTT+TGG - Chr3:76987647-76987666 MsG0380015944.01.T01:CDS 15.0%
!!! AAATACATTCTTTAAAATAG+GGG + Chr3:76991441-76991460 None:intergenic 15.0%
!!! AAGTTGAGATTTTTATTTTT+GGG - Chr3:76987648-76987667 MsG0380015944.01.T01:CDS 15.0%
!!! ATATATAGAGAGTATTTAAA+AGG + Chr3:76991363-76991382 None:intergenic 15.0%
!!! GAAAATACATTCTTTAAAAT+AGG + Chr3:76991443-76991462 None:intergenic 15.0%
!!! TATCATTTTATTTGATTTGA+TGG - Chr3:76989676-76989695 MsG0380015944.01.T01:intron 15.0%
!!! TTTTGATTGTGTTTTTTTTT+TGG - Chr3:76988686-76988705 MsG0380015944.01.T01:intron 15.0%
!! AAAAAATAACAAATGGATCA+AGG + Chr3:76990417-76990436 None:intergenic 20.0%
!! AAAAATAACAAATGGATCAA+GGG + Chr3:76990416-76990435 None:intergenic 20.0%
!! AAAAGAACAACAAATATTTC+TGG - Chr3:76990531-76990550 MsG0380015944.01.T01:CDS 20.0%
!! ACTATCCAAAAAATAACAAA+TGG + Chr3:76990424-76990443 None:intergenic 20.0%
!! ATAATCAAAAGATTGTGTTA+TGG + Chr3:76987438-76987457 None:intergenic 20.0%
!! GAAGTCAAAAATAAAATGAT+GGG - Chr3:76989603-76989622 MsG0380015944.01.T01:CDS 20.0%
!! GACTATATAGCTAATATAAA+TGG - Chr3:76989872-76989891 MsG0380015944.01.T01:intron 20.0%
!! GTATTAAAGTATGTAAAACA+AGG - Chr3:76988580-76988599 MsG0380015944.01.T01:intron 20.0%
!! TATCATATAGAGAGAATAAA+GGG - Chr3:76991093-76991112 MsG0380015944.01.T01:intron 20.0%
!! TGAAGTCAAAAATAAAATGA+TGG - Chr3:76989602-76989621 MsG0380015944.01.T01:CDS 20.0%
!! TTTAGAAGAAGAAAATTTCA+GGG - Chr3:76990308-76990327 MsG0380015944.01.T01:intron 20.0%
!!! AAAAAAACTTGGTACTTTTT+AGG + Chr3:76987294-76987313 None:intergenic 20.0%
!!! AAAAGTACCAAGTTTTTTTT+AGG - Chr3:76987295-76987314 MsG0380015944.01.T01:three_prime_UTR 20.0%
!!! AAGATTGTAAATAGCTATTT+TGG - Chr3:76988605-76988624 MsG0380015944.01.T01:intron 20.0%
!!! AATACATTCTTTAAAATAGG+GGG + Chr3:76991440-76991459 None:intergenic 20.0%
!!! ACTACAGTAAATAGTTATTT+TGG + Chr3:76988862-76988881 None:intergenic 20.0%
!!! ACTTTTGAAACTAAAGTAAA+AGG + Chr3:76989652-76989671 None:intergenic 20.0%
!!! ATTTGTTATTTTTTGGATAG+TGG - Chr3:76990423-76990442 MsG0380015944.01.T01:CDS 20.0%
!!! GAAACAAAATTCTGAAATTA+AGG - Chr3:76988193-76988212 MsG0380015944.01.T01:intron 20.0%
!!! GAAATTAAGGTTTTTTACTT+AGG - Chr3:76988206-76988225 MsG0380015944.01.T01:intron 20.0%
!!! TACTACACTATCAATTTTAA+AGG - Chr3:76988935-76988954 MsG0380015944.01.T01:intron 20.0%
!!! TACTAGTAAACTTTTACATA+AGG + Chr3:76990631-76990650 None:intergenic 20.0%
!!! TTCAAACATGTCAATTTTAT+AGG - Chr3:76989449-76989468 MsG0380015944.01.T01:CDS 20.0%
!!! TTCTAGTATTTTATTTGTGT+TGG - Chr3:76989520-76989539 MsG0380015944.01.T01:CDS 20.0%
!!! TTGATCCATTTGTTATTTTT+TGG - Chr3:76990416-76990435 MsG0380015944.01.T01:CDS 20.0%
!!! TTTCATTTTCTTGATTTTGA+TGG - Chr3:76987600-76987619 MsG0380015944.01.T01:CDS 20.0%
!!! TTTGTTATTTTTTGGATAGT+GGG - Chr3:76990424-76990443 MsG0380015944.01.T01:CDS 20.0%
! AGAATAGTCATTGGTAAATA+AGG + Chr3:76990277-76990296 None:intergenic 25.0%
! AGACAAAAAAGAGTGATTAA+AGG + Chr3:76989401-76989420 None:intergenic 25.0%
! ATCTAAGGGATATTGTTAAT+AGG - Chr3:76989705-76989724 MsG0380015944.01.T01:intron 25.0%
! ATTCTCTCTATATGATACAA+TGG + Chr3:76991090-76991109 None:intergenic 25.0%
! ATTTCTAATGCTCATACATT+TGG - Chr3:76989274-76989293 MsG0380015944.01.T01:intron 25.0%
! CAAAATTGAGAATTTCATCA+TGG + Chr3:76990962-76990981 None:intergenic 25.0%
! GTATCATATAGAGAGAATAA+AGG - Chr3:76991092-76991111 MsG0380015944.01.T01:intron 25.0%
! GTTTAGAAGAAGAAAATTTC+AGG - Chr3:76990307-76990326 MsG0380015944.01.T01:intron 25.0%
! TACTTGTCTCTTAAAGTTAA+AGG + Chr3:76988563-76988582 None:intergenic 25.0%
! TCAAAATTGTCTAGATTATC+AGG + Chr3:76991206-76991225 None:intergenic 25.0%
! TGACAATGATGTTTAAATCT+GGG + Chr3:76987383-76987402 None:intergenic 25.0%
! TGACTAACAAAACATATAAC+AGG + Chr3:76988740-76988759 None:intergenic 25.0%
! TGCATATATAGAATAGTCAT+TGG + Chr3:76990286-76990305 None:intergenic 25.0%
! TTTCTTAAAGCCCAAAATAA+AGG + Chr3:76990450-76990469 None:intergenic 25.0%
!! AGAACCAAATCCTAATATTT+TGG - Chr3:76991160-76991179 MsG0380015944.01.T01:intron 25.0%
!! AGCTATATAGTCTATTCTTT+TGG + Chr3:76989864-76989883 None:intergenic 25.0%
!! ATGTAATGGAAGCAATTAAA+TGG - Chr3:76987822-76987841 MsG0380015944.01.T01:CDS 25.0%
!! ATGTACATTTGAAGTGATAT+TGG - Chr3:76990588-76990607 MsG0380015944.01.T01:intron 25.0%
!! GTAACTTTTGTAGTTTTTGA+TGG - Chr3:76990689-76990708 MsG0380015944.01.T01:intron 25.0%
!! GTCAAAATATTCTTGTTTGT+CGG + Chr3:76989248-76989267 None:intergenic 25.0%
!! TATATAGTCTATTCTTTTGG+AGG + Chr3:76989861-76989880 None:intergenic 25.0%
!! TGATAATCTAGACAATTTTG+AGG - Chr3:76991205-76991224 MsG0380015944.01.T01:intron 25.0%
!! TGTAATGGAAGCAATTAAAT+GGG - Chr3:76987823-76987842 MsG0380015944.01.T01:CDS 25.0%
!! TGTACATTTGAAGTGATATT+GGG - Chr3:76990589-76990608 MsG0380015944.01.T01:intron 25.0%
!!! AAATATTAGGATTTGGTTCT+TGG + Chr3:76991160-76991179 None:intergenic 25.0%
!!! AATTTTAAAGGCAAATAGTG+GGG - Chr3:76988947-76988966 MsG0380015944.01.T01:intron 25.0%
!!! ATTAAGGTTTTTTACTTAGG+TGG - Chr3:76988209-76988228 MsG0380015944.01.T01:intron 25.0%
!!! ATTTGTTTTCCTAAACACAA+TGG + Chr3:76988370-76988389 None:intergenic 25.0%
!!! CAATTTTAAAGGCAAATAGT+GGG - Chr3:76988946-76988965 MsG0380015944.01.T01:intron 25.0%
!!! TCAATTTTAAAGGCAAATAG+TGG - Chr3:76988945-76988964 MsG0380015944.01.T01:intron 25.0%
!!! TCACAAGTTGATTACATTTT+GGG - Chr3:76990987-76991006 MsG0380015944.01.T01:CDS 25.0%
!!! TGTTGTTCTTTTAGAAATGT+GGG + Chr3:76990523-76990542 None:intergenic 25.0%
!!! TTAAGGTTTTTTACTTAGGT+GGG - Chr3:76988210-76988229 MsG0380015944.01.T01:intron 25.0%
!!! TTGGAATTTTGACATATTCA+TGG - Chr3:76988804-76988823 MsG0380015944.01.T01:intron 25.0%
!!! TTGTTGTTCTTTTAGAAATG+TGG + Chr3:76990524-76990543 None:intergenic 25.0%
AAAAGATCAATTGCCAAGAT+GGG - Chr3:76990928-76990947 MsG0380015944.01.T01:CDS 30.0%
AAAAGTAGCTGAGAATAATG+TGG + Chr3:76988393-76988412 None:intergenic 30.0%
AAAGCTCCAACCAAAATATT+AGG + Chr3:76991173-76991192 None:intergenic 30.0%
AAATACAGAGGGAAATATGA+TGG - Chr3:76989133-76989152 MsG0380015944.01.T01:intron 30.0%
AATGTAATCAACTTGTGACT+TGG + Chr3:76990985-76991004 None:intergenic 30.0%
ACCATTGAAACTTCAACATT+TGG + Chr3:76989828-76989847 None:intergenic 30.0%
ACCCTGAAGAAAACATAAAA+AGG + Chr3:76990182-76990201 None:intergenic 30.0%
ACTAAGTAACTCATGTTAAG+TGG + Chr3:76991020-76991039 None:intergenic 30.0%
ACTTAACATGAGTTACTTAG+TGG - Chr3:76991019-76991038 MsG0380015944.01.T01:CDS 30.0%
ATACATGGATGAGTTATTGT+GGG - Chr3:76989198-76989217 MsG0380015944.01.T01:intron 30.0%
ATATAATACTGCACCATTAG+TGG - Chr3:76991265-76991284 MsG0380015944.01.T01:CDS 30.0%
ATTATGCATTCACACTTATC+AGG + Chr3:76988899-76988918 None:intergenic 30.0%
ATTTGATGGAGCAATATCTA+AGG - Chr3:76989690-76989709 MsG0380015944.01.T01:intron 30.0%
CCAACCAAAATATTAGGATT+TGG + Chr3:76991167-76991186 None:intergenic 30.0%
CCCTGAAGAAAACATAAAAA+GGG + Chr3:76990181-76990200 None:intergenic 30.0%
CTATCACAGTTCAATTAAAG+TGG - Chr3:76989784-76989803 MsG0380015944.01.T01:intron 30.0%
CTCTTTGATTAGTAATCTCA+TGG + Chr3:76988770-76988789 None:intergenic 30.0%
CTTAACATGAGTTACTTAGT+GGG - Chr3:76991020-76991039 MsG0380015944.01.T01:CDS 30.0%
GAGAAATAAGCCATTGAAAA+AGG + Chr3:76989550-76989569 None:intergenic 30.0%
GTGAATATAGCACAATTTAG+AGG + Chr3:76988442-76988461 None:intergenic 30.0%
GTGACAATGATGTTTAAATC+TGG + Chr3:76987384-76987403 None:intergenic 30.0%
TAATGCACAATGATTGATAG+TGG - Chr3:76990351-76990370 MsG0380015944.01.T01:intron 30.0%
TATAATACTGCACCATTAGT+GGG - Chr3:76991266-76991285 MsG0380015944.01.T01:CDS 30.0%
TATCTTAAAAGCTTGTCTTG+AGG + Chr3:76988286-76988305 None:intergenic 30.0%
TCATGTCTCAACAAAAACAA+TGG - Chr3:76990780-76990799 MsG0380015944.01.T01:intron 30.0%
TCTCAAATTATTAGCAGTGT+GGG + Chr3:76987967-76987986 None:intergenic 30.0%
TTACCTTTGATGCTAAAACT+TGG + Chr3:76989354-76989373 None:intergenic 30.0%
TTCTCAAATTATTAGCAGTG+TGG + Chr3:76987968-76987987 None:intergenic 30.0%
TTGCAAAATTCATGCAAAGA+GGG - Chr3:76991294-76991313 MsG0380015944.01.T01:CDS 30.0%
TTGTGCTATATTCACTATAG+TGG - Chr3:76988447-76988466 MsG0380015944.01.T01:intron 30.0%
TTTGATGGAGCAATATCTAA+GGG - Chr3:76989691-76989710 MsG0380015944.01.T01:intron 30.0%
TTTGCAAAATTCATGCAAAG+AGG - Chr3:76991293-76991312 MsG0380015944.01.T01:CDS 30.0%
! AAAATATTCTTGTTTGTCGG+TGG + Chr3:76989245-76989264 None:intergenic 30.0%
! AAGGTGCTTAAAAATGAAGT+GGG + Chr3:76988544-76988563 None:intergenic 30.0%
! ACCCTTTTTATGTTTTCTTC+AGG - Chr3:76990177-76990196 MsG0380015944.01.T01:intron 30.0%
! ATGTTAGTAAAGCATTATGC+AGG + Chr3:76989583-76989602 None:intergenic 30.0%
! ATTGTGCAGTTATTTGAGTT+TGG - Chr3:76989106-76989125 MsG0380015944.01.T01:intron 30.0%
! CCCTTTTTATGTTTTCTTCA+GGG - Chr3:76990178-76990197 MsG0380015944.01.T01:intron 30.0%
! GATGGGTTTAAGACTTAATT+TGG - Chr3:76989620-76989639 MsG0380015944.01.T01:CDS 30.0%
! GTAATGGAAGCAATTAAATG+GGG - Chr3:76987824-76987843 MsG0380015944.01.T01:CDS 30.0%
! TGTGAAATTTGGTTTACCAA+TGG - Chr3:76987724-76987743 MsG0380015944.01.T01:CDS 30.0%
! TTACAGATGGTTTAGAACAA+GGG - Chr3:76987555-76987574 MsG0380015944.01.T01:CDS 30.0%
! TTGTGCAGTTATTTGAGTTT+GGG - Chr3:76989107-76989126 MsG0380015944.01.T01:intron 30.0%
! TTTCCAATTTTTGAACTTCC+TGG - Chr3:76988145-76988164 MsG0380015944.01.T01:intron 30.0%
!! AAAGGTGCTTAAAAATGAAG+TGG + Chr3:76988545-76988564 None:intergenic 30.0%
!! AACTCATGTTAAGTGGATTT+TGG + Chr3:76991013-76991032 None:intergenic 30.0%
!! TAGACAATTTTGAGGATCAA+AGG - Chr3:76991213-76991232 MsG0380015944.01.T01:CDS 30.0%
!! TATTTCTGGAAATGTACTTC+TGG - Chr3:76990545-76990564 MsG0380015944.01.T01:intron 30.0%
!! TGATCTTTTGATTCTCACTT+TGG + Chr3:76990917-76990936 None:intergenic 30.0%
!!! AGTACCAAGTTTTTTTTAGG+AGG - Chr3:76987298-76987317 MsG0380015944.01.T01:three_prime_UTR 30.0%
!!! CCAAATCCTAATATTTTGGT+TGG - Chr3:76991164-76991183 MsG0380015944.01.T01:intron 30.0%
!!! GTACCAAGTTTTTTTTAGGA+GGG - Chr3:76987299-76987318 MsG0380015944.01.T01:three_prime_UTR 30.0%
!!! GTCACAAGTTGATTACATTT+TGG - Chr3:76990986-76991005 MsG0380015944.01.T01:CDS 30.0%
!!! TAATATTTTGGTTGGAGCTT+TGG - Chr3:76991172-76991191 MsG0380015944.01.T01:intron 30.0%
!!! TGTTGGTTTTCCTTTTTCAA+TGG - Chr3:76989537-76989556 MsG0380015944.01.T01:CDS 30.0%
!!! TTTTGGGTTTGTGTTTTTTC+AGG - Chr3:76987664-76987683 MsG0380015944.01.T01:CDS 30.0%
AAGATAGATGAGAAGAATCC+AGG - Chr3:76988300-76988319 MsG0380015944.01.T01:intron 35.0%
ACAGTTCAATTAAAGTGGTC+TGG - Chr3:76989789-76989808 MsG0380015944.01.T01:intron 35.0%
AGAGAGAATAAAGGGTTCAT+AGG - Chr3:76991101-76991120 MsG0380015944.01.T01:intron 35.0%
AGGGTTTGCAATAAATCAGT+TGG - Chr3:76990197-76990216 MsG0380015944.01.T01:intron 35.0%
AGTAAAAGCAAAAAGCAGCA+TGG + Chr3:76989476-76989495 None:intergenic 35.0%
ATGAGTTACTTAGTGGGATA+TGG - Chr3:76991026-76991045 MsG0380015944.01.T01:CDS 35.0%
ATTAAAGTGGTCTGGCTATA+TGG - Chr3:76989797-76989816 MsG0380015944.01.T01:intron 35.0%
ATTGTGACAGTAAATGCCAT+TGG + Chr3:76987743-76987762 None:intergenic 35.0%
CAAAAGATCAATTGCCAAGA+TGG - Chr3:76990927-76990946 MsG0380015944.01.T01:CDS 35.0%
CAACCAGGAAGTTCAAAAAT+TGG + Chr3:76988151-76988170 None:intergenic 35.0%
CACTTATCAGGAACATTACT+TGG + Chr3:76988887-76988906 None:intergenic 35.0%
CATACAACCAACGTGTTAAT+TGG - Chr3:76987516-76987535 MsG0380015944.01.T01:CDS 35.0%
CATTAATCATCACATCAACC+AGG + Chr3:76988166-76988185 None:intergenic 35.0%
CTTCCCTCCTAAAAAAAACT+TGG + Chr3:76987305-76987324 None:intergenic 35.0%
GAACAATTATGTGCAAACTG+AGG - Chr3:76991235-76991254 MsG0380015944.01.T01:CDS 35.0%
GAGAGAATAAAGGGTTCATA+GGG - Chr3:76991102-76991121 MsG0380015944.01.T01:intron 35.0%
GATACATGGATGAGTTATTG+TGG - Chr3:76989197-76989216 MsG0380015944.01.T01:intron 35.0%
GATTACTCTATGTAAGACAG+TGG - Chr3:76990832-76990851 MsG0380015944.01.T01:intron 35.0%
GCCAAATGTTGAAGTTTCAA+TGG - Chr3:76989824-76989843 MsG0380015944.01.T01:intron 35.0%
TACATGGATGAGTTATTGTG+GGG - Chr3:76989199-76989218 MsG0380015944.01.T01:intron 35.0%
TCAATCAGATAAGCAATCAG+TGG + Chr3:76990076-76990095 None:intergenic 35.0%
TCTAATGCTCATACATTTGG+TGG - Chr3:76989277-76989296 MsG0380015944.01.T01:intron 35.0%
TGAGTTACTTAGTGGGATAT+GGG - Chr3:76991027-76991046 MsG0380015944.01.T01:CDS 35.0%
TTACTGTCACAATGTTGTCA+TGG - Chr3:76987750-76987769 MsG0380015944.01.T01:CDS 35.0%
TTTGAATTAAGCCAACCTAG+AGG + Chr3:76989435-76989454 None:intergenic 35.0%
TTTGCAAAAACTCCCACTAA+TGG + Chr3:76991281-76991300 None:intergenic 35.0%
! AAAACTGCTAGAGCACATTT+TGG - Chr3:76990229-76990248 MsG0380015944.01.T01:intron 35.0%
! AAGAGACTCGTGAATGTTTT+TGG - Chr3:76988785-76988804 MsG0380015944.01.T01:intron 35.0%
! CAAGGGTATGATAATTGGTA+TGG - Chr3:76991131-76991150 MsG0380015944.01.T01:intron 35.0%
! CAATTAACACGTTGGTTGTA+TGG + Chr3:76987518-76987537 None:intergenic 35.0%
! CTGGTTGATGTGATGATTAA+TGG - Chr3:76988164-76988183 MsG0380015944.01.T01:intron 35.0%
! CTTACAGATGGTTTAGAACA+AGG - Chr3:76987554-76987573 MsG0380015944.01.T01:CDS 35.0%
! TACAGATGGTTTAGAACAAG+GGG - Chr3:76987556-76987575 MsG0380015944.01.T01:CDS 35.0%
! TGTGCAGTTATTTGAGTTTG+GGG - Chr3:76989108-76989127 MsG0380015944.01.T01:intron 35.0%
!! ACATGCATTGACTGTCAAAA+TGG - Chr3:76990038-76990057 MsG0380015944.01.T01:intron 35.0%
!! ATACATTTGGTGGTATTGGT+TGG - Chr3:76989287-76989306 MsG0380015944.01.T01:intron 35.0%
!! ATAGCTTGTGAGACATTTTG+AGG - Chr3:76988070-76988089 MsG0380015944.01.T01:intron 35.0%
!! TCTCCAAGTTTTAGCATCAA+AGG - Chr3:76989348-76989367 MsG0380015944.01.T01:intron 35.0%
!!! TAGAGCACATTTTGGTTACT+TGG - Chr3:76990237-76990256 MsG0380015944.01.T01:intron 35.0%
!!! TGCTGCTTTTTGCTTTTACT+TGG - Chr3:76989476-76989495 MsG0380015944.01.T01:CDS 35.0%
!!! TGTGTTTTTTCAGGTGGATT+TGG - Chr3:76987673-76987692 MsG0380015944.01.T01:CDS 35.0%
!!! TTTTTTACTTAGGTGGGTGA+TGG - Chr3:76988216-76988235 MsG0380015944.01.T01:intron 35.0%
!!! TTTTTTCAGGTGGATTTGGT+TGG - Chr3:76987677-76987696 MsG0380015944.01.T01:CDS 35.0%
AATTGCCAAGATGGGATTGT+GGG - Chr3:76990936-76990955 MsG0380015944.01.T01:CDS 40.0%
ACTATAGTGGCACTAGTGTT+TGG - Chr3:76988460-76988479 MsG0380015944.01.T01:intron 40.0%
AGGCAAGAAATTGTTGAAGC+TGG - Chr3:76987788-76987807 MsG0380015944.01.T01:CDS 40.0%
AGTTTGGGGACAAATACAGA+GGG - Chr3:76989122-76989141 MsG0380015944.01.T01:intron 40.0%
ATACTAGCCCAAATGTGTTG+TGG - Chr3:76987870-76987889 MsG0380015944.01.T01:CDS 40.0%
ATCCCAGCTGAATTCTGTTA+TGG + Chr3:76989314-76989333 None:intergenic 40.0%
ATTGTTGAAGCTGGTGAACT+TGG - Chr3:76987797-76987816 MsG0380015944.01.T01:CDS 40.0%
CAACCTTTCAACTCATCATG+AGG - Chr3:76990113-76990132 MsG0380015944.01.T01:intron 40.0%
CATGAGGCAAGCTATTACTA+TGG - Chr3:76990129-76990148 MsG0380015944.01.T01:intron 40.0%
CTTACATAGAGTAATCCAGC+TGG + Chr3:76990828-76990847 None:intergenic 40.0%
GAGACACAGACCATTATTGT+TGG - Chr3:76988238-76988257 MsG0380015944.01.T01:intron 40.0%
GATTAGACATGTCACAGTGT+CGG + Chr3:76988031-76988050 None:intergenic 40.0%
GCAGGTGATCATGTGAAATT+TGG - Chr3:76987713-76987732 MsG0380015944.01.T01:CDS 40.0%
GGCATTGTCTCGCATATTTA+AGG - Chr3:76988835-76988854 MsG0380015944.01.T01:intron 40.0%
GTCCATAACAGAATTCAGCT+GGG - Chr3:76989309-76989328 MsG0380015944.01.T01:intron 40.0%
GTTAATTGGCGTCATCATTC+TGG - Chr3:76987530-76987549 MsG0380015944.01.T01:CDS 40.0%
TAACAAATGGATCAAGGGCA+AGG + Chr3:76990411-76990430 None:intergenic 40.0%
TACTAGCCCAAATGTGTTGT+GGG - Chr3:76987871-76987890 MsG0380015944.01.T01:CDS 40.0%
TAGACTGCATCAATTGCACA+TGG + Chr3:76989767-76989786 None:intergenic 40.0%
TCATGCAAAGAGGGAATAGA+AGG - Chr3:76991303-76991322 MsG0380015944.01.T01:CDS 40.0%
TGGTGAACTTGGTCATGTAA+TGG - Chr3:76987808-76987827 MsG0380015944.01.T01:CDS 40.0%
! AAGGGTGTATTCCATGAATG+TGG + Chr3:76990163-76990182 None:intergenic 40.0%
! CATGGAGTGCTATTGAGTTT+AGG - Chr3:76987768-76987787 MsG0380015944.01.T01:CDS 40.0%
! GAAAGTTGATCCCTTTGCAT+AGG + Chr3:76990494-76990513 None:intergenic 40.0%
! GACATATTCATGGACTACAG+TGG - Chr3:76988814-76988833 MsG0380015944.01.T01:intron 40.0%
! GCACACAAGGGTATGATAAT+TGG - Chr3:76991126-76991145 MsG0380015944.01.T01:intron 40.0%
! GCTCATACATTTGGTGGTAT+TGG - Chr3:76989283-76989302 MsG0380015944.01.T01:intron 40.0%
! GGGAAATATGATGGAAGTGT+TGG - Chr3:76989142-76989161 MsG0380015944.01.T01:intron 40.0%
! GTGCTCTAGCAGTTTTACAA+TGG + Chr3:76990225-76990244 None:intergenic 40.0%
! TTCAATGGCTTATTTCTCGC+TGG - Chr3:76989552-76989571 MsG0380015944.01.T01:CDS 40.0%
! TTGCCTCATGATGAGTTGAA+AGG + Chr3:76990119-76990138 None:intergenic 40.0%
!! ACTTTGAAGCACAACGTTCT+GGG - Chr3:76987486-76987505 MsG0380015944.01.T01:CDS 40.0%
!! CATCATTCTGGTCTTACAGA+TGG - Chr3:76987542-76987561 MsG0380015944.01.T01:CDS 40.0%
!! CTTTTAGAAATGTGGGAGTG+TGG + Chr3:76990516-76990535 None:intergenic 40.0%
!! GCACAATGATTGATAGTGGA+TGG - Chr3:76990355-76990374 MsG0380015944.01.T01:intron 40.0%
!! TACTTTGAAGCACAACGTTC+TGG - Chr3:76987485-76987504 MsG0380015944.01.T01:CDS 40.0%
!!! ATTTTGGTTGGAGCTTTGGT+AGG - Chr3:76991176-76991195 MsG0380015944.01.T01:intron 40.0%
!!! GGATAGTGGGCCTTTATTTT+GGG - Chr3:76990437-76990456 MsG0380015944.01.T01:CDS 40.0%
!!! TGGATAGTGGGCCTTTATTT+TGG - Chr3:76990436-76990455 MsG0380015944.01.T01:CDS 40.0%
!!! TGGGTTTGTGTTTTTTCAGG+TGG - Chr3:76987667-76987686 MsG0380015944.01.T01:CDS 40.0%
AAACAATGGCAGCAGCAATG+TGG - Chr3:76990794-76990813 MsG0380015944.01.T01:intron 45.0%
AATGTGGAAAGAACACCAGC+TGG - Chr3:76990810-76990829 MsG0380015944.01.T01:intron 45.0%
ACTGTGACATGTCTAATCCG+AGG - Chr3:76988033-76988052 MsG0380015944.01.T01:CDS 45.0%
AGCTGGGATGTTAAGTATGC+TGG - Chr3:76989325-76989344 MsG0380015944.01.T01:intron 45.0%
AGTGAAGAGCTACTATGCGT+CGG - Chr3:76989168-76989187 MsG0380015944.01.T01:intron 45.0%
AGTGGCACTAGTGTTTGGTT+TGG - Chr3:76988465-76988484 MsG0380015944.01.T01:intron 45.0%
AGTTATTGTGGGGAGCTATG+TGG - Chr3:76989209-76989228 MsG0380015944.01.T01:intron 45.0%
CAATTGCCAAGATGGGATTG+TGG - Chr3:76990935-76990954 MsG0380015944.01.T01:CDS 45.0%
CAGCTGCTTCCATTGTGTTT+AGG - Chr3:76988358-76988377 MsG0380015944.01.T01:intron 45.0%
CATTTCACGTTCCTCTAGGT+TGG - Chr3:76989421-76989440 MsG0380015944.01.T01:CDS 45.0%
CTGGACGTTGCCAACAATAA+TGG + Chr3:76988251-76988270 None:intergenic 45.0%
GAAGAATCCAGGTTCAGATC+TGG - Chr3:76988311-76988330 MsG0380015944.01.T01:intron 45.0%
GAGTTTGGGGACAAATACAG+AGG - Chr3:76989121-76989140 MsG0380015944.01.T01:intron 45.0%
GATCCCTTTGCATAGGTAGA+AGG + Chr3:76990487-76990506 None:intergenic 45.0%
GATGACGCCAATTAACACGT+TGG + Chr3:76987526-76987545 None:intergenic 45.0%
GCAAAGAGGGAATAGAAGGT+TGG - Chr3:76991307-76991326 MsG0380015944.01.T01:CDS 45.0%
GGTCCATAACAGAATTCAGC+TGG - Chr3:76989308-76989327 MsG0380015944.01.T01:intron 45.0%
GTCTCACAAGCTATGAAGCA+CGG + Chr3:76988064-76988083 None:intergenic 45.0%
GTCTCATTTCACGTTCCTCT+AGG - Chr3:76989417-76989436 MsG0380015944.01.T01:intron 45.0%
GTGCCTTCTACCTATGCAAA+GGG - Chr3:76990481-76990500 MsG0380015944.01.T01:CDS 45.0%
GTGGGGTATGAAGTATGAAC+TGG - Chr3:76988964-76988983 MsG0380015944.01.T01:intron 45.0%
TGTGCCTTCTACCTATGCAA+AGG - Chr3:76990480-76990499 MsG0380015944.01.T01:CDS 45.0%
TTACTACTACCTGCTGAGCA+TGG + Chr3:76988419-76988438 None:intergenic 45.0%
TTATTGTTGGCAACGTCCAG+AGG - Chr3:76988251-76988270 MsG0380015944.01.T01:intron 45.0%
! ACCTCTATGATGCACCCTTT+TGG + Chr3:76991063-76991082 None:intergenic 45.0%
! CCTCTATGATGCACCCTTTT+GGG + Chr3:76991062-76991081 None:intergenic 45.0%
! CTCTATGATGCACCCTTTTG+GGG + Chr3:76991061-76991080 None:intergenic 45.0%
! TTCAGGTGGATTTGGTTGGA+GGG - Chr3:76987681-76987700 MsG0380015944.01.T01:CDS 45.0%
! TTTCAGGTGGATTTGGTTGG+AGG - Chr3:76987680-76987699 MsG0380015944.01.T01:CDS 45.0%
AATCCAGGTTCAGATCTGGC+TGG - Chr3:76988315-76988334 MsG0380015944.01.T01:intron 50.0%
ACCTCTGCCCACAACACATT+TGG + Chr3:76987881-76987900 None:intergenic 50.0%
ATGGGCCTAAGTACCCCAAA+AGG - Chr3:76991045-76991064 MsG0380015944.01.T01:CDS 50.0%
CCTCTGCCCACAACACATTT+GGG + Chr3:76987880-76987899 None:intergenic 50.0%
CTTGAGGTTGTCATGTCCTC+TGG + Chr3:76988270-76988289 None:intergenic 50.0%
GGTTCATAGGGTGCACACAA+GGG - Chr3:76991114-76991133 MsG0380015944.01.T01:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + Chr3:76988053-76988072 None:intergenic 50.0%
TGGAGAAACTGCTGCAGCTA+TGG - Chr3:76988335-76988354 MsG0380015944.01.T01:intron 50.0%
TGGGCCTAAGTACCCCAAAA+GGG - Chr3:76991046-76991065 MsG0380015944.01.T01:CDS 50.0%
TGGTGTGTGCTCCACATTCA+TGG - Chr3:76990149-76990168 MsG0380015944.01.T01:intron 50.0%
! ACTTTTGCACCATGCTCAGC+AGG - Chr3:76988407-76988426 MsG0380015944.01.T01:intron 50.0%
! CCCAAAAGGGTGCATCATAG+AGG - Chr3:76991059-76991078 MsG0380015944.01.T01:CDS 50.0%
! TTGAAGCACAACGTTCTGGG+AGG - Chr3:76987489-76987508 MsG0380015944.01.T01:CDS 50.0%
! TTGGTTGGAGCTTTGGTAGG+AGG - Chr3:76991179-76991198 MsG0380015944.01.T01:intron 50.0%
!! GGCACTAGTGTTTGGTTTGG+TGG - Chr3:76988468-76988487 MsG0380015944.01.T01:intron 50.0%
!! GTTGGAGGGTACTATGATGC+AGG - Chr3:76987695-76987714 MsG0380015944.01.T01:CDS 50.0%
!!! TGCACCCTTTTGGGGTACTT+AGG + Chr3:76991053-76991072 None:intergenic 50.0%
CATGGCCCACAATCCCATCT+TGG + Chr3:76990944-76990963 None:intergenic 55.0%
CCCAAATGTGTTGTGGGCAG+AGG - Chr3:76987877-76987896 MsG0380015944.01.T01:CDS 55.0%
GGGTTCATAGGGTGCACACA+AGG - Chr3:76991113-76991132 MsG0380015944.01.T01:intron 55.0%
TCTCCAGCCAGATCTGAACC+TGG + Chr3:76988321-76988340 None:intergenic 55.0%
! AGCTACTATGCGTCGGTGAG+TGG - Chr3:76989175-76989194 MsG0380015944.01.T01:intron 55.0%
! TGCGTCGGTGAGTGGATACA+TGG - Chr3:76989183-76989202 MsG0380015944.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 76987288 76991501 76987288 ID=MsG0380015944.01;Name=MsG0380015944.01
Chr3 mRNA 76987288 76991501 76987288 ID=MsG0380015944.01.T01;Parent=MsG0380015944.01;Name=MsG0380015944.01.T01;_AED=0.33;_eAED=0.33;_QI=47|1|1|1|1|1|5|134|525
Chr3 exon 76987288 76988087 76987288 ID=MsG0380015944.01.T01:exon:24961;Parent=MsG0380015944.01.T01
Chr3 exon 76989420 76989674 76989420 ID=MsG0380015944.01.T01:exon:24960;Parent=MsG0380015944.01.T01
Chr3 exon 76990361 76990561 76990361 ID=MsG0380015944.01.T01:exon:24959;Parent=MsG0380015944.01.T01
Chr3 exon 76990891 76991103 76990891 ID=MsG0380015944.01.T01:exon:24958;Parent=MsG0380015944.01.T01
Chr3 exon 76991212 76991501 76991212 ID=MsG0380015944.01.T01:exon:24957;Parent=MsG0380015944.01.T01
Chr3 five_prime_UTR 76991455 76991501 76991455 ID=MsG0380015944.01.T01:five_prime_utr;Parent=MsG0380015944.01.T01
Chr3 CDS 76991212 76991454 76991212 ID=MsG0380015944.01.T01:cds;Parent=MsG0380015944.01.T01
Chr3 CDS 76990891 76991103 76990891 ID=MsG0380015944.01.T01:cds;Parent=MsG0380015944.01.T01
Chr3 CDS 76990361 76990561 76990361 ID=MsG0380015944.01.T01:cds;Parent=MsG0380015944.01.T01
Chr3 CDS 76989420 76989674 76989420 ID=MsG0380015944.01.T01:cds;Parent=MsG0380015944.01.T01
Chr3 CDS 76987422 76988087 76987422 ID=MsG0380015944.01.T01:cds;Parent=MsG0380015944.01.T01
Chr3 three_prime_UTR 76987288 76987421 76987288 ID=MsG0380015944.01.T01:three_prime_utr;Parent=MsG0380015944.01.T01
Gene Sequence

>MsG0380015944.01.T01

ATGAAGAATGAGAGACAACAACAACATCATAGAGCTTCTAAAATTCCCAGATTTAAACATCATTGTCACATTTTTCTCTTCATTTTGTTCACTCTTTTTTCCATAACACAATCTTTTGATTATGCTGATGCACTTTCAAAAAGTCTTCTTTACTTTGAAGCACAACGTTCTGGGAGGTTACCATACAACCAACGTGTTAATTGGCGTCATCATTCTGGTCTTACAGATGGTTTAGAACAAGGGGTGGATTTGGTTGGAGGGTACTATGATGCAGGTGATCATGTGAAATTTGGTTTACCAATGGCATTTACTGTCACAATGTTGTCATGGAGTGCTATTGAGTTTAGGCAAGAAATTGTTGAAGCTGGTGAACTTGGTCATGTAATGGAAGCAATTAAATGGGGAACTGATTATTTCATCAAAGCTCATACTAGCCCAAATGTGTTGTGGGCAGAGGTGGGTGATGGAGACACAGACCATTATTGTTGGCAACGTCCAGAGGACATGACAACCTCAAGACAAGCTTTTAAGATAGATGAGAAGAATCCAGGTTCAGATCTGGCTGGAGAAACTGCTGCAGCTATGGCAGCTGCTTCCATTGTGTTTAGGAAAACAAATCCACATTATTCTCAGCTACTTTTGCACCATGCTCAGCAGTTATTTGAGTTTGGGGACAAATACAGAGGGAAATATGATGGAAGTGTTGGAGTAGTGAAGAGCTACTATGCGTCGGTGAGTGGATACATGGATGAGTTATTGTGGGGAGCTATGTGGTTGTACAAAGCCACCGACAAACAAGAATATTTTGACTACATTATTTCTAATGCTCATACATTTGGTGGTATTGGTTGGTCCATAACAGAATTCAGCTGGGATGTTAAGTATGCTGGTCTCCAAGTTTTAGCATCAAAGTTTTTGATGGATGCAAAACACAATAAGCATGCTGATTTACTAGAACAGTACAAATCAAAAGCAGAGTACTATATATGTTCATGTCTCAACAAAAACAATGGCAGCAGCAATGTGGAAAGAACACCAGCTGGATTACTCTATGTAAGACAGTGGAACAACATGCAATATGTTTCTACAGCAGCATTTCTACTCACAGTTTACTCTGATTTTCTCCAAAGTGAGAATCAAAAGATCAATTGCCAAGATGGGATTGTGGGCCATGATGAAATTCTCAATTTTGCCAAGTCACAAGTTGATTACATTTTGGGCCAAAATCCACTTAACATGAGTTACTTAGTGGGATATGGGCCTAAGTACCCCAAAAGGGTGCATCATAGAGGTGCATCCATTGTATCATATAGAGAGAATAAAGGGTTCATAGGGTGCACACAAGGGTATGATAATTGGTATGGTGTCCAAGAACCAAATCCTAATATTTTGGTTGGAGCTTTGGTAGGAGGACCTGATAATCTAGACAATTTTGAGGATCAAAGGAACAATTATGTGCAAACTGAGGCTTGCACATATAATACTGCACCATTAGTGGGAGTTTTTGCAAAATTCATGCAAAGAGGGAATAGAAGGTTGGTTCATGATTCTGATTCACTTTTAGTTGCTTCCTTTTAA

Protein sequence

>MsG0380015944.01.T01

MKNERQQQHHRASKIPRFKHHCHIFLFILFTLFSITQSFDYADALSKSLLYFEAQRSGRLPYNQRVNWRHHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSAIEFRQEIVEAGELGHVMEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRQAFKIDEKNPGSDLAGETAAAMAAASIVFRKTNPHYSQLLLHHAQQLFEFGDKYRGKYDGSVGVVKSYYASVSGYMDELLWGAMWLYKATDKQEYFDYIISNAHTFGGIGWSITEFSWDVKYAGLQVLASKFLMDAKHNKHADLLEQYKSKAEYYICSCLNKNNGSSNVERTPAGLLYVRQWNNMQYVSTAAFLLTVYSDFLQSENQKINCQDGIVGHDEILNFAKSQVDYILGQNPLNMSYLVGYGPKYPKRVHHRGASIVSYRENKGFIGCTQGYDNWYGVQEPNPNILVGALVGGPDNLDNFEDQRNNYVQTEACTYNTAPLVGVFAKFMQRGNRRLVHDSDSLLVASF*