AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043480.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043480.01.T01 MTR_7g090080 52.410 166 68 3 1 156 1 165 9.74e-48 155
MsG0880043480.01.T01 MTR_8g036220 98.148 54 1 0 163 216 24 77 8.36e-30 110
MsG0880043480.01.T01 MTR_7g025355 87.500 56 7 0 1 56 1 56 5.24e-27 100
MsG0880043480.01.T01 MTR_8g089985 67.742 62 20 0 155 216 17 78 2.02e-21 88.6
MsG0880043480.01.T01 MTR_2g083860 72.222 54 15 0 163 216 21 74 6.84e-21 87.0
MsG0880043480.01.T01 MTR_0262s0050 67.742 62 20 0 155 216 15 76 7.88e-21 87.0
MsG0880043480.01.T01 MTR_3g086980 64.516 62 22 0 155 216 16 77 2.02e-20 85.9
MsG0880043480.01.T01 MTR_2g075950 70.370 54 16 0 163 216 21 74 2.78e-20 85.5
MsG0880043480.01.T01 MTR_1g052475 66.129 62 21 0 155 216 15 76 3.36e-20 85.5
MsG0880043480.01.T01 MTR_2g014990 70.370 54 16 0 163 216 21 74 3.57e-20 85.1
MsG0880043480.01.T01 MTR_4g088090 70.370 54 16 0 163 216 21 74 4.78e-20 84.7
MsG0880043480.01.T01 MTR_2g090865 74.074 54 14 0 163 216 19 72 4.84e-20 84.7
MsG0880043480.01.T01 MTR_4g079350 70.370 54 16 0 163 216 21 74 5.08e-20 84.7
MsG0880043480.01.T01 MTR_3g069510 70.370 54 16 0 163 216 20 73 2.67e-19 82.8
MsG0880043480.01.T01 MTR_2g005510 57.895 76 24 1 149 216 1 76 2.79e-19 82.8
MsG0880043480.01.T01 MTR_4g064897 70.370 54 16 0 163 216 20 73 6.54e-19 81.6
MsG0880043480.01.T01 MTR_4g035820 76.087 46 11 0 81 126 622 667 1.04e-18 84.3
MsG0880043480.01.T01 MTR_7g405790 70.370 54 16 0 163 216 23 76 1.33e-18 81.3
MsG0880043480.01.T01 MTR_7g117910 61.290 62 24 0 155 216 20 81 3.58e-18 79.7
MsG0880043480.01.T01 MTR_7g051940 72.222 54 15 0 163 216 21 74 5.05e-18 79.3
MsG0880043480.01.T01 MTR_8g027220 59.677 62 25 0 155 216 26 87 1.78e-17 78.2
MsG0880043480.01.T01 MTR_8g107070 58.065 62 26 0 155 216 14 75 1.69e-16 76.3
MsG0880043480.01.T01 MTR_8g099250 86.486 37 5 0 163 199 24 60 3.97e-16 70.5
MsG0880043480.01.T01 MTR_6g079550 64.815 54 19 0 163 216 20 73 4.39e-16 74.3
MsG0880043480.01.T01 MTR_3g053480 86.486 37 5 0 163 199 24 60 1.39e-15 68.9
MsG0880043480.01.T01 MTR_1g078200 64.815 54 19 0 163 216 22 75 1.93e-15 72.8
MsG0880043480.01.T01 MTR_1g097420 57.407 54 23 0 163 216 16 69 1.50e-14 70.1
MsG0880043480.01.T01 MTR_8g092020 59.259 54 22 0 163 216 20 73 1.63e-14 69.7
MsG0880043480.01.T01 MTR_2g101890 55.556 54 24 0 163 216 18 71 9.47e-13 65.1
MsG0880043480.01.T01 MTR_4g069850 55.556 54 24 0 163 216 16 69 9.62e-13 65.1
MsG0880043480.01.T01 MTR_4g012940 55.556 54 24 0 163 216 16 69 1.23e-12 64.7
MsG0880043480.01.T01 MTR_1g094220 56.364 55 23 1 163 216 39 93 2.51e-12 63.9
MsG0880043480.01.T01 MTR_1g094220 56.364 55 23 1 163 216 39 93 2.61e-12 63.5
MsG0880043480.01.T01 MTR_1g097420 56.000 50 22 0 167 216 47 96 3.56e-12 63.9
MsG0880043480.01.T01 MTR_1g094220 56.364 55 23 1 163 216 39 93 3.57e-12 63.5
MsG0880043480.01.T01 MTR_1g094220 56.364 55 23 1 163 216 39 93 4.15e-12 63.5
MsG0880043480.01.T01 MTR_6g039490 52.830 53 25 0 163 215 16 68 6.76e-12 63.2
MsG0880043480.01.T01 MTR_3g087160 44.444 54 30 0 163 216 17 70 4.71e-11 60.5
MsG0880043480.01.T01 MTR_8g090215 44.444 54 30 0 163 216 17 70 5.61e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043480.01.T01 AT5G47960 58.904 73 30 0 144 216 4 76 6.09e-21 87.4
MsG0880043480.01.T01 AT5G65270 66.129 62 21 0 155 216 17 78 8.83e-21 87.0
MsG0880043480.01.T01 AT3G12160 67.742 62 20 0 155 216 15 76 9.16e-21 87.0
MsG0880043480.01.T01 AT3G15060 72.222 54 15 0 163 216 21 74 1.08e-20 86.7
MsG0880043480.01.T01 AT5G60860 72.222 54 15 0 163 216 21 74 1.40e-20 86.3
MsG0880043480.01.T01 AT1G16920 72.222 54 15 0 163 216 21 74 2.82e-20 85.5
MsG0880043480.01.T01 AT4G18430 68.519 54 17 0 163 216 21 74 8.88e-20 84.3
MsG0880043480.01.T01 AT1G06400 72.222 54 15 0 163 216 21 74 1.01e-19 84.0
MsG0880043480.01.T01 AT5G45750 68.519 54 17 0 163 216 21 74 1.90e-19 83.2
MsG0880043480.01.T01 AT4G18800 68.519 54 17 0 163 216 21 74 2.37e-19 83.2
MsG0880043480.01.T01 AT1G07410 59.155 71 28 1 147 216 3 73 4.77e-19 82.4
MsG0880043480.01.T01 AT1G09630 70.370 54 16 0 163 216 20 73 4.79e-19 82.4
MsG0880043480.01.T01 AT4G39990 62.903 62 23 0 155 216 17 78 7.23e-19 82.0
MsG0880043480.01.T01 AT2G33870 59.677 62 25 0 155 216 13 74 1.37e-18 81.3
MsG0880043480.01.T01 AT2G43130 70.370 54 16 0 163 216 20 73 1.39e-18 80.9
MsG0880043480.01.T01 AT1G28550 68.519 54 17 0 163 216 21 74 1.47e-18 80.9
MsG0880043480.01.T01 AT3G46830 68.519 54 17 0 163 216 20 73 2.01e-18 80.5
MsG0880043480.01.T01 AT3G46830 68.519 54 17 0 163 216 20 73 2.01e-18 80.5
MsG0880043480.01.T01 AT5G59150 68.519 54 17 0 163 216 20 73 2.30e-18 80.5
MsG0880043480.01.T01 AT1G01200 62.903 62 23 0 155 216 28 89 1.16e-17 79.0
MsG0880043480.01.T01 AT1G05810 66.667 54 18 0 163 216 20 73 6.81e-17 76.6
MsG0880043480.01.T01 AT1G05810 66.667 54 18 0 163 216 66 119 1.22e-16 76.6
MsG0880043480.01.T01 AT2G31680 66.667 54 18 0 163 216 20 73 1.35e-16 75.9
MsG0880043480.01.T01 AT3G07410 68.519 54 17 0 163 216 20 73 2.33e-16 75.1
MsG0880043480.01.T01 AT1G18200 56.452 62 27 0 155 216 13 74 2.28e-15 72.8
MsG0880043480.01.T01 AT5G47520 62.963 54 20 0 163 216 22 75 3.91e-15 72.0
MsG0880043480.01.T01 AT1G73640 54.839 62 28 0 155 216 13 74 6.29e-15 71.6
MsG0880043480.01.T01 AT1G22740 57.407 54 23 0 163 216 16 69 1.73e-14 69.7
MsG0880043480.01.T01 AT1G52280 57.407 54 23 0 163 216 16 69 1.14e-13 67.8
MsG0880043480.01.T01 AT3G16100 57.407 54 23 0 163 216 16 69 1.19e-13 67.4
MsG0880043480.01.T01 AT4G09720 55.556 54 24 0 163 216 16 69 1.71e-13 67.0
MsG0880043480.01.T01 AT4G09720 55.556 54 24 0 163 216 16 69 1.90e-13 67.0
MsG0880043480.01.T01 AT4G09720 55.556 54 24 0 163 216 16 69 2.08e-13 67.0
MsG0880043480.01.T01 AT2G21880 55.556 54 24 0 163 216 17 70 7.13e-13 65.5
MsG0880043480.01.T01 AT1G49300 55.556 54 24 0 163 216 16 69 8.93e-13 65.1
MsG0880043480.01.T01 AT1G49300 55.556 54 24 0 163 216 16 69 8.93e-13 65.1
MsG0880043480.01.T01 AT3G18820 55.556 54 24 0 163 216 16 69 1.10e-12 65.1
MsG0880043480.01.T01 AT3G54840 56.364 55 23 1 163 216 7 61 1.70e-12 63.5
MsG0880043480.01.T01 AT3G54840 56.364 55 23 1 163 216 41 95 2.50e-12 63.9
MsG0880043480.01.T01 AT3G54840 56.364 55 23 1 163 216 41 95 2.51e-12 63.5
MsG0880043480.01.T01 AT5G10260 44.444 54 30 0 163 216 17 70 4.86e-11 60.5
MsG0880043480.01.T01 AT2G22290 44.444 54 30 0 163 216 17 70 5.00e-11 60.5

Find 63 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTTCATGAATCATCTT+AGG 0.157590 8:-25392026 MsG0880043480.01.T01:CDS
AAGATAATTGGAAATGGTTT+TGG 0.189202 8:-25392636 MsG0880043480.01.T01:CDS
TGCTTTCTCAAGGGGTATTA+TGG 0.209413 8:-25392742 MsG0880043480.01.T01:CDS
TTTGACCAAGACTGTTCTTA+TGG 0.268890 8:-25391064 MsG0880043480.01.T01:CDS
TATGATTGTGACTCTGGTTT+TGG 0.317566 8:-25391162 MsG0880043480.01.T01:CDS
CACTCAATTCAACCGCATTA+TGG 0.323961 8:-25392118 MsG0880043480.01.T01:CDS
CATGGGAGTATCTTAATAAA+TGG 0.332440 8:-25392068 MsG0880043480.01.T01:CDS
GGCATCACTTCCTGCATGGC+TGG 0.345941 8:+25392251 None:intergenic
CATAAGCAATGACATAAATA+TGG 0.346742 8:+25392680 None:intergenic
GCTTGTCAAGGCTCAGATTT+GGG 0.360973 8:-25391034 MsG0880043480.01.T01:CDS
GATATTGTGTTATGCATCTA+TGG 0.363616 8:-25392215 MsG0880043480.01.T01:CDS
GCCATGCAGGAAGTGATGCC+AGG 0.364106 8:-25392248 MsG0880043480.01.T01:CDS
AGCTTGTCAAGGCTCAGATT+TGG 0.364225 8:-25391035 MsG0880043480.01.T01:CDS
ATGTGGAGAATAAAGATAAT+TGG 0.399786 8:-25392648 MsG0880043480.01.T01:CDS
GAATTACTACATAAAGATCT+TGG 0.400860 8:-25392613 MsG0880043480.01.T01:CDS
CATCTTAGGGATGTATTTGA+AGG 0.406313 8:-25392012 MsG0880043480.01.T01:intron
TTGAAATCTAAAGCTACAAT+TGG 0.411996 8:-25391096 MsG0880043480.01.T01:CDS
AGGAATTGAGAGGAGTGGTA+TGG 0.414219 8:-25392164 MsG0880043480.01.T01:CDS
AAATTTCATGAATCATCTTA+GGG 0.454095 8:-25392025 MsG0880043480.01.T01:CDS
CCCTGGCATCACTTCCTGCA+TGG 0.456282 8:+25392247 None:intergenic
GGTTGTTATGATTGTGACTC+TGG 0.456540 8:-25391168 MsG0880043480.01.T01:CDS
AGAATAAAGATAATTGGAAA+TGG 0.458984 8:-25392642 MsG0880043480.01.T01:CDS
TGCTTATGCCATTGTGGATG+TGG 0.462112 8:-25392665 MsG0880043480.01.T01:CDS
GGAATTGAGAGGAGTGGTAT+GGG 0.467249 8:-25392163 MsG0880043480.01.T01:CDS
CATAATGCGGTTGAATTGAG+TGG 0.472493 8:+25392119 None:intergenic
ATCTTGGAAATTATGAGCGC+TGG 0.501273 8:-25392597 MsG0880043480.01.T01:CDS
AGGGCAACTGTTGTCTGCTG+TGG 0.503794 8:-25392719 MsG0880043480.01.T01:CDS
AGAGGATTAATGAGAAGGCA+TGG 0.504445 8:-25392086 MsG0880043480.01.T01:CDS
CACAAAACAATGGAAGGAAA+AGG 0.515382 8:-25392184 MsG0880043480.01.T01:CDS
TTGTCTGCTGTGGGACAAGA+TGG 0.515676 8:-25392709 MsG0880043480.01.T01:CDS
GAGTGGTATGGGAGTGTGCA+AGG 0.518200 8:-25392152 MsG0880043480.01.T01:CDS
GTTAGATGGATGCTTTCTCA+AGG 0.523640 8:-25392752 None:intergenic
GGTGAAGAGGATTAATGAGA+AGG 0.531849 8:-25392091 MsG0880043480.01.T01:CDS
GGGCAACTGTTGTCTGCTGT+GGG 0.532443 8:-25392718 MsG0880043480.01.T01:CDS
ATGATCCATAAGAACAGTCT+TGG 0.534296 8:+25391059 None:intergenic
ACAATATCTATGTGCACCCC+TGG 0.538907 8:+25392230 None:intergenic
CCATGCAGGAAGTGATGCCA+GGG 0.539178 8:-25392247 MsG0880043480.01.T01:CDS
GGGATACTGCTGGTCAAGAA+AGG 0.539209 8:-25391014 MsG0880043480.01.T01:CDS
CTTCATCTCAGACATGCAAA+AGG 0.543198 8:-25392568 MsG0880043480.01.T01:intron
TGTCATTGCTTATGCCATTG+TGG 0.549237 8:-25392671 MsG0880043480.01.T01:CDS
ATAAATGGCCAAAGGAAGCA+TGG 0.551381 8:-25392053 MsG0880043480.01.T01:CDS
GAGGATTAATGAGAAGGCAT+GGG 0.560023 8:-25392085 MsG0880043480.01.T01:CDS
TTCTCAAGGGGTATTATGGA+GGG 0.562331 8:-25392738 MsG0880043480.01.T01:CDS
GAACTTCACAAAACAATGGA+AGG 0.565438 8:-25392190 MsG0880043480.01.T01:CDS
GCTCAGATTTGGGATACTGC+TGG 0.571910 8:-25391024 MsG0880043480.01.T01:CDS
TGGAAATTATGAGCGCTGGA+TGG 0.575407 8:-25392593 MsG0880043480.01.T01:CDS
TTAGATGGATGCTTTCTCAA+GGG 0.576624 8:-25392751 None:intergenic
TTTCTCAAGGGGTATTATGG+AGG 0.585202 8:-25392739 MsG0880043480.01.T01:CDS
TAGATGGATGCTTTCTCAAG+GGG 0.588499 8:-25392750 MsG0880043480.01.T01:CDS
TATGGATCATAAGCTTGTCA+AGG 0.590505 8:-25391046 MsG0880043480.01.T01:CDS
TGGAAGGAAAAGGAATTGAG+AGG 0.597469 8:-25392174 MsG0880043480.01.T01:CDS
GGAAAAGGAATTGAGAGGAG+TGG 0.601815 8:-25392169 MsG0880043480.01.T01:CDS
ATTCAACCGCATTATGGAGA+GGG 0.613142 8:-25392112 MsG0880043480.01.T01:CDS
ATAATGCGGTTGAATTGAGT+GGG 0.624373 8:+25392120 None:intergenic
GGAGGAACTTCACAAAACAA+TGG 0.628467 8:-25392194 MsG0880043480.01.T01:CDS
TTTATTCTCCACATCCACAA+TGG 0.635135 8:+25392657 None:intergenic
AGTGGTATGGGAGTGTGCAA+GGG 0.639340 8:-25392151 MsG0880043480.01.T01:CDS
GTATCTTAATAAATGGCCAA+AGG 0.640580 8:-25392061 MsG0880043480.01.T01:CDS
GCATTATGGAGAGGGTGAAG+AGG 0.650566 8:-25392104 MsG0880043480.01.T01:CDS
AATTCAACCGCATTATGGAG+AGG 0.659239 8:-25392113 MsG0880043480.01.T01:CDS
TCTTCACCCTCTCCATAATG+CGG 0.666947 8:+25392106 None:intergenic
ATTGTGTTATGCATCTATGG+AGG 0.677710 8:-25392212 MsG0880043480.01.T01:CDS
CATGCAGGAAGTGATGCCAG+GGG 0.683894 8:-25392246 MsG0880043480.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAAGTAAAATAATTTA+GGG - Chr8:25391378-25391397 MsG0880043480.01.T01:intron 10.0%
!! ATTCTAATTAAATGAGAATA+TGG + Chr8:25391859-25391878 None:intergenic 15.0%
!! GATAGTAAGTAAAATAATTT+AGG - Chr8:25391377-25391396 MsG0880043480.01.T01:intron 15.0%
!! TTCTAATTAAATGAGAATAT+GGG + Chr8:25391858-25391877 None:intergenic 15.0%
!!! TTCAAAATGTTTGTTATTTT+CGG - Chr8:25392002-25392021 MsG0880043480.01.T01:intron 15.0%
!! AAAATTTCATGAATCATCTT+AGG - Chr8:25391729-25391748 MsG0880043480.01.T01:intron 20.0%
!! AAATTTCATGAATCATCTTA+GGG - Chr8:25391730-25391749 MsG0880043480.01.T01:intron 20.0%
!! AGAATAAAGATAATTGGAAA+TGG - Chr8:25391113-25391132 MsG0880043480.01.T01:CDS 20.0%
!! AGATTGCATATTGTTTAATT+AGG - Chr8:25391881-25391900 MsG0880043480.01.T01:intron 20.0%
!! ATGTTTGATGCATAAAAATT+TGG + Chr8:25392438-25392457 None:intergenic 20.0%
!! ATTGACAATTTACAAATTCA+AGG - Chr8:25392120-25392139 MsG0880043480.01.T01:CDS 20.0%
!! GATAGTAAGTAAAATAATCA+GGG - Chr8:25391409-25391428 MsG0880043480.01.T01:intron 20.0%
!! GATAGTTAGTAATATATTCA+GGG - Chr8:25391346-25391365 MsG0880043480.01.T01:intron 20.0%
!! GATTGCATATTGTTTAATTA+GGG - Chr8:25391882-25391901 MsG0880043480.01.T01:intron 20.0%
!! TAGAAATTTCGTATAATTGA+GGG - Chr8:25392149-25392168 MsG0880043480.01.T01:CDS 20.0%
!! TATGTAAGTAAAATAATGCA+GGG - Chr8:25391315-25391334 MsG0880043480.01.T01:intron 20.0%
!! TGATAGTAAGTAAAATAATC+AGG - Chr8:25391408-25391427 MsG0880043480.01.T01:intron 20.0%
!! TGATAGTTAGTAATATATTC+AGG - Chr8:25391345-25391364 MsG0880043480.01.T01:intron 20.0%
!! TTAGAAATTTCGTATAATTG+AGG - Chr8:25392148-25392167 MsG0880043480.01.T01:CDS 20.0%
!! TTATGTAAGTAAAATAATGC+AGG - Chr8:25391314-25391333 MsG0880043480.01.T01:intron 20.0%
!!! GAAAATAACAAACATTTTGA+AGG + Chr8:25392003-25392022 None:intergenic 20.0%
!!! GGTCTTTTTTTTTTTATGTT+AGG + Chr8:25392417-25392436 None:intergenic 20.0%
!!! TTGATTTGCAGAAATTTTTT+TGG + Chr8:25391970-25391989 None:intergenic 20.0%
! AATCACATAGAAAAAGAGAA+TGG - Chr8:25392515-25392534 MsG0880043480.01.T01:intron 25.0%
! ATGTGGAGAATAAAGATAAT+TGG - Chr8:25391107-25391126 MsG0880043480.01.T01:CDS 25.0%
! CATAAGCAATGACATAAATA+TGG + Chr8:25391078-25391097 None:intergenic 25.0%
! GAATTACTACATAAAGATCT+TGG - Chr8:25391142-25391161 MsG0880043480.01.T01:CDS 25.0%
! GATGGATATTGATATATTCA+GGG - Chr8:25391440-25391459 MsG0880043480.01.T01:intron 25.0%
! GTTTCTTGGATTGTTAAAAT+TGG - Chr8:25391468-25391487 MsG0880043480.01.T01:intron 25.0%
!! AAGATAATTGGAAATGGTTT+TGG - Chr8:25391119-25391138 MsG0880043480.01.T01:CDS 25.0%
!! AGATAATTGGAAATGGTTTT+GGG - Chr8:25391120-25391139 MsG0880043480.01.T01:CDS 25.0%
!! ATCACATTCAGTTTTCAAAA+GGG - Chr8:25392484-25392503 MsG0880043480.01.T01:intron 25.0%
!! GGTTCCAATTTTATACAATT+GGG - Chr8:25391903-25391922 MsG0880043480.01.T01:intron 25.0%
!! GTTCCAATTTTATACAATTG+GGG - Chr8:25391904-25391923 MsG0880043480.01.T01:intron 25.0%
!! TATCACATTCAGTTTTCAAA+AGG - Chr8:25392483-25392502 MsG0880043480.01.T01:intron 25.0%
!! TGATGGATATTGATATATTC+AGG - Chr8:25391439-25391458 MsG0880043480.01.T01:intron 25.0%
!! TTGAAATCTAAAGCTACAAT+TGG - Chr8:25392659-25392678 MsG0880043480.01.T01:CDS 25.0%
ATCAGTATGCATGCAAAAAA+GGG + Chr8:25391253-25391272 None:intergenic 30.0%
CTTCCCCAATTGTATAAAAT+TGG + Chr8:25391910-25391929 None:intergenic 30.0%
GAATGAGAAAAAGACTAAGA+TGG + Chr8:25391221-25391240 None:intergenic 30.0%
GATATTGTGTTATGCATCTA+TGG - Chr8:25391540-25391559 MsG0880043480.01.T01:intron 30.0%
GTATCTTAATAAATGGCCAA+AGG - Chr8:25391694-25391713 MsG0880043480.01.T01:intron 30.0%
TTGGATTGTTAAAATTGGCA+GGG - Chr8:25391473-25391492 MsG0880043480.01.T01:intron 30.0%
! ACTTTAATGGTGATGAAAAG+AGG + Chr8:25391792-25391811 None:intergenic 30.0%
! CTTTTCATCACCATTAAAGT+TGG - Chr8:25391792-25391811 MsG0880043480.01.T01:intron 30.0%
! GAAAATCTCAGCTTTTGAAT+AGG - Chr8:25392615-25392634 MsG0880043480.01.T01:CDS 30.0%
! GGGTTCCAATTTTATACAAT+TGG - Chr8:25391902-25391921 MsG0880043480.01.T01:intron 30.0%
! TTTTTGTGTTCTATAGAAGG+AGG + Chr8:25392378-25392397 None:intergenic 30.0%
!! CATGGGAGTATCTTAATAAA+TGG - Chr8:25391687-25391706 MsG0880043480.01.T01:intron 30.0%
!! GGGTATTGATTATATGTTCA+AGG - Chr8:25392566-25392585 MsG0880043480.01.T01:intron 30.0%
!!! ATAATCAGGGATTGTTTTGA+TGG - Chr8:25391422-25391441 MsG0880043480.01.T01:intron 30.0%
!!! CGTTTTTTGTGTTCTATAGA+AGG + Chr8:25392381-25392400 None:intergenic 30.0%
AAACATTGAAGATCCAAGGT+GGG - Chr8:25392452-25392471 MsG0880043480.01.T01:intron 35.0%
ATAATGCGGTTGAATTGAGT+GGG + Chr8:25391638-25391657 None:intergenic 35.0%
ATGATCCATAAGAACAGTCT+TGG + Chr8:25392699-25392718 None:intergenic 35.0%
ATTGTGTTATGCATCTATGG+AGG - Chr8:25391543-25391562 MsG0880043480.01.T01:intron 35.0%
CACAAAACAATGGAAGGAAA+AGG - Chr8:25391571-25391590 MsG0880043480.01.T01:intron 35.0%
CATCAAACATTGAAGATCCA+AGG - Chr8:25392448-25392467 MsG0880043480.01.T01:intron 35.0%
CATCAGTATGCATGCAAAAA+AGG + Chr8:25391254-25391273 None:intergenic 35.0%
CATCTTAGGGATGTATTTGA+AGG - Chr8:25391743-25391762 MsG0880043480.01.T01:intron 35.0%
CTTGGATTGTTAAAATTGGC+AGG - Chr8:25391472-25391491 MsG0880043480.01.T01:intron 35.0%
GAACTTCACAAAACAATGGA+AGG - Chr8:25391565-25391584 MsG0880043480.01.T01:intron 35.0%
GTAAGAGAAGAGAAAAAGTG+TGG + Chr8:25392351-25392370 None:intergenic 35.0%
GTATAATTGAGGGACTAAGT+TGG - Chr8:25392159-25392178 MsG0880043480.01.T01:CDS 35.0%
TATGACATGTGAGAGGTTAA+CGG - Chr8:25392051-25392070 MsG0880043480.01.T01:CDS 35.0%
TATGGATCATAAGCTTGTCA+AGG - Chr8:25392709-25392728 MsG0880043480.01.T01:CDS 35.0%
TCTTCAAGCTCCAACTTTAA+TGG + Chr8:25391805-25391824 None:intergenic 35.0%
TTTATTCTCCACATCCACAA+TGG + Chr8:25391101-25391120 None:intergenic 35.0%
TTTGACCAAGACTGTTCTTA+TGG - Chr8:25392691-25392710 MsG0880043480.01.T01:CDS 35.0%
! TATTCAGGGAACTTGTTTCT+TGG - Chr8:25391454-25391473 MsG0880043480.01.T01:intron 35.0%
!! TATGATTGTGACTCTGGTTT+TGG - Chr8:25392593-25392612 MsG0880043480.01.T01:CDS 35.0%
!! TCATTGAAAGCGTTCTTGTT+AGG + Chr8:25392256-25392275 None:intergenic 35.0%
!! TTTTTAGTCCATGCTTCCTT+TGG + Chr8:25391713-25391732 None:intergenic 35.0%
AAGAGAATGGCTCAGTTTCA+AGG - Chr8:25392528-25392547 MsG0880043480.01.T01:intron 40.0%
AATTCAACCGCATTATGGAG+AGG - Chr8:25391642-25391661 MsG0880043480.01.T01:intron 40.0%
AGAGGATTAATGAGAAGGCA+TGG - Chr8:25391669-25391688 MsG0880043480.01.T01:intron 40.0%
ATAAATGGCCAAAGGAAGCA+TGG - Chr8:25391702-25391721 MsG0880043480.01.T01:intron 40.0%
ATCTTGGAAATTATGAGCGC+TGG - Chr8:25391158-25391177 MsG0880043480.01.T01:CDS 40.0%
ATTCAACCGCATTATGGAGA+GGG - Chr8:25391643-25391662 MsG0880043480.01.T01:intron 40.0%
ATTTCGTCCTTCTGTCCAAA+CGG + Chr8:25392098-25392117 None:intergenic 40.0%
CAAACATTGAAGATCCAAGG+TGG - Chr8:25392451-25392470 MsG0880043480.01.T01:intron 40.0%
CACTCAATTCAACCGCATTA+TGG - Chr8:25391637-25391656 MsG0880043480.01.T01:intron 40.0%
CATAATGCGGTTGAATTGAG+TGG + Chr8:25391639-25391658 None:intergenic 40.0%
CTTCATCTCAGACATGCAAA+AGG - Chr8:25391187-25391206 MsG0880043480.01.T01:intron 40.0%
GGAGGAACTTCACAAAACAA+TGG - Chr8:25391561-25391580 MsG0880043480.01.T01:intron 40.0%
GGTGAAGAGGATTAATGAGA+AGG - Chr8:25391664-25391683 MsG0880043480.01.T01:intron 40.0%
GGTTGTTATGATTGTGACTC+TGG - Chr8:25392587-25392606 MsG0880043480.01.T01:CDS 40.0%
TGGAAGGAAAAGGAATTGAG+AGG - Chr8:25391581-25391600 MsG0880043480.01.T01:intron 40.0%
TGTCATTGCTTATGCCATTG+TGG - Chr8:25391084-25391103 MsG0880043480.01.T01:CDS 40.0%
! CAAGGTGATTTGGATCATGA+GGG - Chr8:25392546-25392565 MsG0880043480.01.T01:intron 40.0%
! GAGAAAAAGTGTGGTTGATG+AGG + Chr8:25392342-25392361 None:intergenic 40.0%
! GAGGATTAATGAGAAGGCAT+GGG - Chr8:25391670-25391689 MsG0880043480.01.T01:intron 40.0%
! TCAAGGTGATTTGGATCATG+AGG - Chr8:25392545-25392564 MsG0880043480.01.T01:intron 40.0%
! TGATAATGCAAAACCCACCT+TGG + Chr8:25392468-25392487 None:intergenic 40.0%
!! GTCCCTAAATTTTAACGCGT+CGG + Chr8:25392185-25392204 None:intergenic 40.0%
!! TGCTTTCTCAAGGGGTATTA+TGG - Chr8:25391013-25391032 MsG0880043480.01.T01:CDS 40.0%
!! TGTGGTTGATGAGGCAATTA+TGG + Chr8:25392333-25392352 None:intergenic 40.0%
!! TTCTCAAGGGGTATTATGGA+GGG - Chr8:25391017-25391036 MsG0880043480.01.T01:CDS 40.0%
!! TTTCTCAAGGGGTATTATGG+AGG - Chr8:25391016-25391035 MsG0880043480.01.T01:CDS 40.0%
ACAATATCTATGTGCACCCC+TGG + Chr8:25391528-25391547 None:intergenic 45.0%
AGCTTGTCAAGGCTCAGATT+TGG - Chr8:25392720-25392739 MsG0880043480.01.T01:CDS 45.0%
AGGAATTGAGAGGAGTGGTA+TGG - Chr8:25391591-25391610 MsG0880043480.01.T01:intron 45.0%
ATTGGGGAAGACAGATACGT+TGG - Chr8:25391920-25391939 MsG0880043480.01.T01:intron 45.0%
GCTTGTCAAGGCTCAGATTT+GGG - Chr8:25392721-25392740 MsG0880043480.01.T01:CDS 45.0%
GGAAAAGGAATTGAGAGGAG+TGG - Chr8:25391586-25391605 MsG0880043480.01.T01:intron 45.0%
GGAATTGAGAGGAGTGGTAT+GGG - Chr8:25391592-25391611 MsG0880043480.01.T01:intron 45.0%
GGCCGACGCGTTAAAATTTA+GGG - Chr8:25392180-25392199 MsG0880043480.01.T01:CDS 45.0%
GGCTCAGTTTCAAGGTGATT+TGG - Chr8:25392536-25392555 MsG0880043480.01.T01:intron 45.0%
TCTTCACCCTCTCCATAATG+CGG + Chr8:25391652-25391671 None:intergenic 45.0%
TGCTTATGCCATTGTGGATG+TGG - Chr8:25391090-25391109 MsG0880043480.01.T01:CDS 45.0%
TGGCCGACGCGTTAAAATTT+AGG - Chr8:25392179-25392198 MsG0880043480.01.T01:CDS 45.0%
TTGGGGAAGAAAGAGCTGTT+TGG - Chr8:25391939-25391958 MsG0880043480.01.T01:intron 45.0%
TTGGGGAAGACAGATACGTT+GGG - Chr8:25391921-25391940 MsG0880043480.01.T01:intron 45.0%
!! TGGAAATTATGAGCGCTGGA+TGG - Chr8:25391162-25391181 MsG0880043480.01.T01:CDS 45.0%
CAAATTAGTCCCTGCCTACG+TGG - Chr8:25392026-25392045 MsG0880043480.01.T01:CDS 50.0%
CACGTAGGCAGGGACTAATT+TGG + Chr8:25392028-25392047 None:intergenic 50.0%
CTGTCCAAACGGAGGGTTAA+CGG + Chr8:25392087-25392106 None:intergenic 50.0%
GCATTATGGAGAGGGTGAAG+AGG - Chr8:25391651-25391670 MsG0880043480.01.T01:intron 50.0%
GGGATACTGCTGGTCAAGAA+AGG - Chr8:25392741-25392760 MsG0880043480.01.T01:CDS 50.0%
TAACCCTCCGTTTGGACAGA+AGG - Chr8:25392088-25392107 MsG0880043480.01.T01:CDS 50.0%
TCACATGTCATACGCCACGT+AGG + Chr8:25392043-25392062 None:intergenic 50.0%
TGGGGAAGACAGATACGTTG+GGG - Chr8:25391922-25391941 MsG0880043480.01.T01:intron 50.0%
TTGTCTGCTGTGGGACAAGA+TGG - Chr8:25391046-25391065 MsG0880043480.01.T01:CDS 50.0%
! AGTGGTATGGGAGTGTGCAA+GGG - Chr8:25391604-25391623 MsG0880043480.01.T01:intron 50.0%
! GCTCAGATTTGGGATACTGC+TGG - Chr8:25392731-25392750 MsG0880043480.01.T01:CDS 50.0%
!!! GGTTTTGATTCCAGCCATGC+AGG - Chr8:25391494-25391513 MsG0880043480.01.T01:intron 50.0%
AGGGCAACTGTTGTCTGCTG+TGG - Chr8:25391036-25391055 MsG0880043480.01.T01:CDS 55.0%
ATGTCATACGCCACGTAGGC+AGG + Chr8:25392039-25392058 None:intergenic 55.0%
CAGTCCGTTAACCCTCCGTT+TGG - Chr8:25392080-25392099 MsG0880043480.01.T01:CDS 55.0%
CATGCAGGAAGTGATGCCAG+GGG - Chr8:25391509-25391528 MsG0880043480.01.T01:intron 55.0%
CCATGCAGGAAGTGATGCCA+GGG - Chr8:25391508-25391527 MsG0880043480.01.T01:intron 55.0%
CGTCCTTCTGTCCAAACGGA+GGG + Chr8:25392094-25392113 None:intergenic 55.0%
CGTGGCGTATGACATGTGAG+AGG - Chr8:25392044-25392063 MsG0880043480.01.T01:CDS 55.0%
GGGCAACTGTTGTCTGCTGT+GGG - Chr8:25391037-25391056 MsG0880043480.01.T01:CDS 55.0%
TCGTCCTTCTGTCCAAACGG+AGG + Chr8:25392095-25392114 None:intergenic 55.0%
TGTCATACGCCACGTAGGCA+GGG + Chr8:25392038-25392057 None:intergenic 55.0%
! GAGTGGTATGGGAGTGTGCA+AGG - Chr8:25391603-25391622 MsG0880043480.01.T01:intron 55.0%
CCCTGGCATCACTTCCTGCA+TGG + Chr8:25391511-25391530 None:intergenic 60.0%
GCCATGCAGGAAGTGATGCC+AGG - Chr8:25391507-25391526 MsG0880043480.01.T01:intron 60.0%
GGCATCACTTCCTGCATGGC+TGG + Chr8:25391507-25391526 None:intergenic 60.0%
!! GGAGGGTTAACGGACTGACG+TGG + Chr8:25392077-25392096 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 25391008 25392769 25391008 ID=MsG0880043480.01;Name=MsG0880043480.01
Chr8 mRNA 25391008 25392769 25391008 ID=MsG0880043480.01.T01;Parent=MsG0880043480.01;Name=MsG0880043480.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|0.5|0.66|3|0|217
Chr8 exon 25392569 25392769 25392569 ID=MsG0880043480.01.T01:exon:1137;Parent=MsG0880043480.01.T01
Chr8 exon 25392013 25392283 25392013 ID=MsG0880043480.01.T01:exon:1136;Parent=MsG0880043480.01.T01
Chr8 exon 25391008 25391189 25391008 ID=MsG0880043480.01.T01:exon:1135;Parent=MsG0880043480.01.T01
Chr8 CDS 25392569 25392769 25392569 ID=MsG0880043480.01.T01:cds;Parent=MsG0880043480.01.T01
Chr8 CDS 25392013 25392283 25392013 ID=MsG0880043480.01.T01:cds;Parent=MsG0880043480.01.T01
Chr8 CDS 25391008 25391189 25391008 ID=MsG0880043480.01.T01:cds;Parent=MsG0880043480.01.T01
Gene Sequence

>MsG0880043480.01.T01

ATGGATGCTTTCTCAAGGGGTATTATGGAGGGCAACTGTTGTCTGCTGTGGGACAAGATGGAAATAACCATATTTATGTCATTGCTTATGCCATTGTGGATGTGGAGAATAAAGATAATTGGAAATGGTTTTGGGAATTACTACATAAAGATCTTGGAAATTATGAGCGCTGGATGGAACTTCATCTCAGACATGCAAAAGGGTTTTGATTCCAGCCATGCAGGAAGTGATGCCAGGGGTGCACATAGATATTGTGTTATGCATCTATGGAGGAACTTCACAAAACAATGGAAGGAAAAGGAATTGAGAGGAGTGGTATGGGAGTGTGCAAGGGCAACAACTCCCACTCAATTCAACCGCATTATGGAGAGGGTGAAGAGGATTAATGAGAAGGCATGGGAGTATCTTAATAAATGGCCAAAGGAAGCATGGACTAAAAATTTCATGAATCATCTTAGGGATGTATTTGAAGGTTGTTATGATTGTGACTCTGGTTTTGGAAAATCTCAGCTTTTGAATAGGTTTGTTAGAAATGAATTTCATTTGAAATCTAAAGCTACAATTGGTGTTGAGTTTTTGACCAAGACTGTTCTTATGGATCATAAGCTTGTCAAGGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTCCTAA

Protein sequence

>MsG0880043480.01.T01

MDAFSRGIMEGNCCLLWDKMEITIFMSLLMPLWMWRIKIIGNGFGNYYIKILEIMSAGWNFISDMQKGFDSSHAGSDARGAHRYCVMHLWRNFTKQWKEKELRGVVWECARATTPTQFNRIMERVKRINEKAWEYLNKWPKEAWTKNFMNHLRDVFEGCYDCDSGFGKSQLLNRFVRNEFHLKSKATIGVEFLTKTVLMDHKLVKAQIWDTAGQERS*