AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016905.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016905.01.T01 MTR_3g097570 96.718 457 13 2 1 457 1 455 0.0 909
MsG0380016905.01.T01 MTR_8g446550 42.925 212 110 3 107 317 321 522 1.03e-43 163
MsG0380016905.01.T01 MTR_7g105920 46.632 193 94 5 108 293 265 455 4.13e-42 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016905.01.T01 AT5G23610 37.634 372 199 7 108 453 124 488 1.73e-75 245
MsG0380016905.01.T01 AT5G23610 37.534 373 199 7 108 453 124 489 2.89e-75 244
MsG0380016905.01.T01 AT5G51330 44.118 204 96 3 107 293 290 492 7.83e-44 163
MsG0380016905.01.T01 AT5G51330 44.118 204 96 3 107 293 294 496 8.15e-44 163

Find 180 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTTCTTCGCGCTTCT+TGG 0.208719 3:+89299493 MsG0380016905.01.T01:five_prime_UTR
TTTCTTGCAGGAGATGTTTA+TGG 0.210272 3:+89302093 MsG0380016905.01.T01:intron
CAACTCGTTGATAATGTTTC+AGG 0.243745 3:+89301991 MsG0380016905.01.T01:CDS
TTACTATCTGGAAAATATAT+TGG 0.261036 3:-89300349 None:intergenic
CGTAAATACATTGGTGATAC+TGG 0.271676 3:+89300761 MsG0380016905.01.T01:CDS
CCCGCCACCATTAAACTAAA+AGG 0.280995 3:-89302691 None:intergenic
AAGTTCAGTACTTCTTCATT+TGG 0.283704 3:-89301036 None:intergenic
CTTAGTACAGGTCGGGTTAT+TGG 0.284312 3:-89300728 None:intergenic
AGATCAAACTATACTGTAAA+AGG 0.292421 3:-89302405 None:intergenic
GGTGGTTATAATCCTATTCT+AGG 0.293975 3:-89302220 None:intergenic
TCCCTCCAGGTGCCACTTTA+CGG 0.303889 3:-89300814 None:intergenic
GTTCAACCCTGACGGAATTA+TGG 0.307173 3:+89300856 MsG0380016905.01.T01:CDS
TTTGCCAACCACTAAGTTCA+TGG 0.323165 3:+89302327 MsG0380016905.01.T01:three_prime_UTR
GTATTATTGTCTTGTTGGTT+AGG 0.328584 3:+89302465 MsG0380016905.01.T01:three_prime_UTR
GTCTTCAACAGGAATGAAAT+TGG 0.332023 3:+89302440 MsG0380016905.01.T01:three_prime_UTR
AGACATCTCTTTGAGGTATC+AGG 0.343221 3:+89302197 MsG0380016905.01.T01:exon
GATGACGTCCGCGAGGAGGC+TGG 0.343634 3:+89300905 MsG0380016905.01.T01:CDS
CATCGTCAACAGGCATTCAT+TGG 0.346643 3:+89300241 MsG0380016905.01.T01:CDS
TGAAGTGGAGCAACATCTTA+TGG 0.347796 3:+89301503 MsG0380016905.01.T01:CDS
CAGTATCACCAATGTATTTA+CGG 0.351183 3:-89300760 None:intergenic
GGTCTTTAGGTAGGCTTTGC+CGG 0.351234 3:+89302510 MsG0380016905.01.T01:three_prime_UTR
GTATATTAACAGGGCAAGTA+TGG 0.358640 3:+89301459 MsG0380016905.01.T01:intron
GGATACCACCATCCACTGTT+AGG 0.358688 3:+89300945 MsG0380016905.01.T01:CDS
TTAACAGTTGTAGAAGAATC+TGG 0.359007 3:-89301950 None:intergenic
TCTTCATTGAGTGGCTGAAT+TGG 0.364573 3:-89301726 None:intergenic
CCGTCATCCTGAGTATTGTC+TGG 0.369164 3:-89301624 None:intergenic
GGTTGATCCTCTTGCATTGT+GGG 0.373824 3:-89301917 None:intergenic
GTGGATGGTGGTATCCAATA+GGG 0.379280 3:-89300938 None:intergenic
TTAGTACAGGTCGGGTTATT+GGG 0.379451 3:-89300727 None:intergenic
GGACTCTTTGAAGAATTTGC+AGG 0.379929 3:+89301337 MsG0380016905.01.T01:CDS
AACCTCTTCCATGAACTTAG+TGG 0.380359 3:-89302335 None:intergenic
CTGGGGTTGATGACCCCTAT+TGG 0.380387 3:+89300924 MsG0380016905.01.T01:CDS
AGTTCAGTACTTCTTCATTT+GGG 0.387011 3:-89301035 None:intergenic
GGCCATCCGTGCCCCTTGTC+AGG 0.402712 3:+89300967 MsG0380016905.01.T01:CDS
TTCTTCTTTACTCGTAAAAC+TGG 0.410237 3:+89302258 MsG0380016905.01.T01:three_prime_UTR
GAAGAATCTGGGGTGACATT+AGG 0.411888 3:-89301938 None:intergenic
AGTCCGACTAAGTTGTTCTT+AGG 0.413408 3:+89302653 MsG0380016905.01.T01:three_prime_UTR
GATGTATCAAACACTGTATA+TGG 0.414656 3:+89302157 MsG0380016905.01.T01:CDS
ATTCAAATGGAAAGAAAAGA+TGG 0.422345 3:+89302120 MsG0380016905.01.T01:CDS
CGTCAGGGTTGAACCATCTT+CGG 0.426408 3:-89300847 None:intergenic
AGTGGATGGTGGTATCCAAT+AGG 0.428009 3:-89300939 None:intergenic
ACCAACTCGCACTGTGTTGT+CGG 0.428213 3:+89299456 MsG0380016905.01.T01:five_prime_UTR
AGTATGGTGAGTTCGCGATA+TGG 0.430148 3:+89301475 MsG0380016905.01.T01:CDS
TGCAAGTGCAAGTGCTTTGT+CGG 0.430693 3:-89300172 None:intergenic
TAGTTTAATGGTGGCGGGTG+GGG 0.432405 3:+89302696 MsG0380016905.01.T01:three_prime_UTR
GAAGAAAACTTGTGAAGAAA+AGG 0.432818 3:-89302241 None:intergenic
AAGTACAAGTTCTCATTGAA+TGG 0.433501 3:-89302554 None:intergenic
TTTGTTTAACTTAGAGCTGC+AGG 0.433568 3:+89300199 MsG0380016905.01.T01:five_prime_UTR
TGGTTGTATTATTGTCTTGT+TGG 0.436350 3:+89302460 MsG0380016905.01.T01:three_prime_UTR
GAGAAAGAAGCATGACAGTA+AGG 0.439317 3:+89300519 MsG0380016905.01.T01:CDS
GAAACTGCTTAAAATAGAAA+TGG 0.441793 3:+89301012 MsG0380016905.01.T01:CDS
GTTGCTAATGCAGCTGACTT+TGG 0.445231 3:+89300145 MsG0380016905.01.T01:intron
AGGATGACGGATTGGCAACT+TGG 0.448641 3:+89301637 MsG0380016905.01.T01:CDS
TGTTTATGGATTTATTCAAA+TGG 0.448971 3:+89302107 MsG0380016905.01.T01:CDS
AGCTGCAGGGATGGATAGGT+GGG 0.450023 3:+89300213 MsG0380016905.01.T01:exon
GTGGGGTTATGTGTCGCATA+TGG 0.455859 3:+89302713 MsG0380016905.01.T01:three_prime_UTR
AGTATCACCAATGTATTTAC+GGG 0.456584 3:-89300759 None:intergenic
TCATCTTGTAGATGTCCTAT+AGG 0.457242 3:+89302613 MsG0380016905.01.T01:three_prime_UTR
ATTTGAGGCAGGTCTTCAAC+AGG 0.457533 3:+89302429 MsG0380016905.01.T01:three_prime_UTR
CGGAATTATGGAGTATTGGT+TGG 0.461416 3:+89300868 MsG0380016905.01.T01:CDS
TTTGGATAGCAGAGATATGC+AGG 0.462744 3:+89301120 MsG0380016905.01.T01:intron
CTGACGGAATTATGGAGTAT+TGG 0.463406 3:+89300864 MsG0380016905.01.T01:CDS
GTGGGAGGTGCTGAAGGCAG+AGG 0.464284 3:+89300688 MsG0380016905.01.T01:CDS
ATGACGTCCGCGAGGAGGCT+GGG 0.464713 3:+89300906 MsG0380016905.01.T01:CDS
CAATACTCCATAATTCCGTC+AGG 0.466213 3:-89300863 None:intergenic
CTAAAAGTGGTGCACTCTCT+TGG 0.466483 3:-89301558 None:intergenic
TTAGTTTAATGGTGGCGGGT+GGG 0.466736 3:+89302695 MsG0380016905.01.T01:three_prime_UTR
TTTAGTACAGGTCTTTAGGT+AGG 0.472068 3:+89302501 MsG0380016905.01.T01:three_prime_UTR
TGAGGTATCAGGCCTAGAAT+AGG 0.473853 3:+89302208 MsG0380016905.01.T01:three_prime_UTR
GTGGGGTGTTCATCGTCAAC+AGG 0.476341 3:+89300231 MsG0380016905.01.T01:CDS
ACCTCAATAAGCTGACCATA+AGG 0.476397 3:-89300454 None:intergenic
GTATAGTTTGATCTAATTTG+AGG 0.478849 3:+89302414 MsG0380016905.01.T01:three_prime_UTR
CAACCGCCTAACTGAAATCA+TGG 0.479071 3:+89301316 MsG0380016905.01.T01:CDS
GACTATGATTTGAGCAATGT+GGG 0.484812 3:+89299346 MsG0380016905.01.T01:five_prime_UTR
GAGCTGCAGGGATGGATAGG+TGG 0.485530 3:+89300212 MsG0380016905.01.T01:exon
TTTAGTTTAATGGTGGCGGG+TGG 0.486710 3:+89302694 MsG0380016905.01.T01:three_prime_UTR
TGGGAGGTGCTGAAGGCAGA+GGG 0.492323 3:+89300689 MsG0380016905.01.T01:CDS
TAACAGTTGTAGAAGAATCT+GGG 0.496287 3:-89301949 None:intergenic
AGCTGATCTTAGTACAGGTC+GGG 0.496477 3:-89300735 None:intergenic
AGCATGACAGTAAGGATAGA+TGG 0.497539 3:+89300527 MsG0380016905.01.T01:CDS
GGACTGATCGGTTCCGAAGA+TGG 0.500965 3:+89300834 MsG0380016905.01.T01:CDS
GCCTTATGGTCAGCTTATTG+AGG 0.505640 3:+89300453 MsG0380016905.01.T01:CDS
TGACGTCCGCGAGGAGGCTG+GGG 0.505696 3:+89300907 MsG0380016905.01.T01:CDS
CTAGCTAACATGTAAAATAC+CGG 0.506948 3:-89302529 None:intergenic
AGGTTGATCCTCTTGCATTG+TGG 0.510835 3:-89301918 None:intergenic
AGTTTGATCTAATTTGAGGC+AGG 0.512861 3:+89302418 MsG0380016905.01.T01:three_prime_UTR
TTGGTTGGAGAGGGCTGACT+TGG 0.513352 3:+89300883 MsG0380016905.01.T01:CDS
ATCCTGACAAGGGGCACGGA+TGG 0.514234 3:-89300969 None:intergenic
TTAGTCAGTTCTTCATTGAG+TGG 0.514458 3:-89301735 None:intergenic
GAGGTGAAAGAGGAGTATGC+TGG 0.516120 3:+89300472 MsG0380016905.01.T01:CDS
GAAGAATCAGCATCCTGACA+AGG 0.520021 3:-89300980 None:intergenic
TTAGAGCTGCAGGGATGGAT+AGG 0.521038 3:+89300209 MsG0380016905.01.T01:exon
ATGAAGTAGACATCTCTTTG+AGG 0.522762 3:+89302190 MsG0380016905.01.T01:exon
AAGAGTCCATGATTTCAGTT+AGG 0.522764 3:-89301322 None:intergenic
GTCAACAGGCATTCATTGGT+TGG 0.523113 3:+89300245 MsG0380016905.01.T01:CDS
TTCTGTTACTAGGAAGGAAG+AGG 0.524484 3:+89300285 MsG0380016905.01.T01:CDS
GACGGATTGGCAACTTGGAT+AGG 0.527728 3:+89301642 MsG0380016905.01.T01:CDS
CTGAATTGGCATGCCTGAGT+AGG 0.528503 3:-89301712 None:intergenic
TTCTACAACTGTTAATTCAA+AGG 0.528922 3:+89301958 MsG0380016905.01.T01:CDS
AACCACTAAGTTCATGGAAG+AGG 0.533655 3:+89302333 MsG0380016905.01.T01:three_prime_UTR
GGTCAATGTGCTTCAGTAAG+TGG 0.534563 3:-89300793 None:intergenic
CGGGCAGCTGATCTTAGTAC+AGG 0.536563 3:-89300740 None:intergenic
GAAGCTTAGAGAGGTGAAAG+AGG 0.537563 3:+89300429 MsG0380016905.01.T01:CDS
TTGAAATAATAGTCATGTTG+AGG 0.537928 3:+89301886 MsG0380016905.01.T01:intron
CAGCTGATCTTAGTACAGGT+CGG 0.541011 3:-89300736 None:intergenic
ACGGATTGGCAACTTGGATA+GGG 0.541184 3:+89301643 MsG0380016905.01.T01:CDS
AAGCATGTGGGAGGTGCTGA+AGG 0.543073 3:+89300682 MsG0380016905.01.T01:CDS
TTTCTTGAAGATCCCTACTC+AGG 0.547860 3:+89301699 MsG0380016905.01.T01:CDS
TCACCTCTCTAAGCTGACTA+AGG 0.547878 3:-89300390 None:intergenic
AAAGATGGAGCAGCAGCTGT+TGG 0.548685 3:+89302135 MsG0380016905.01.T01:CDS
TTCTGAAGGAGGACTAAAAG+TGG 0.548840 3:-89301571 None:intergenic
GATACCACCATCCACTGTTA+GGG 0.550025 3:+89300946 MsG0380016905.01.T01:CDS
GAAAACTGAAAGTAACATGA+TGG 0.552332 3:+89301165 MsG0380016905.01.T01:CDS
GGAGGTGCTGAAGGCAGAGG+GGG 0.552568 3:+89300691 MsG0380016905.01.T01:CDS
TATGGAGTATTGGTTGGAGA+GGG 0.553818 3:+89300874 MsG0380016905.01.T01:CDS
AGGTGAAAGAGGAGTATGCT+GGG 0.555325 3:+89300473 MsG0380016905.01.T01:CDS
TTGTTTAACTTAGAGCTGCA+GGG 0.555987 3:+89300200 MsG0380016905.01.T01:five_prime_UTR
CGGAACCGATCAGTCCCTCC+AGG 0.556285 3:-89300827 None:intergenic
TTAACTTAGAGCTGCAGGGA+TGG 0.557996 3:+89300204 MsG0380016905.01.T01:exon
GAAAACTTGTGAAGAAAAGG+TGG 0.559690 3:-89302238 None:intergenic
TTAGAATTCAACATCAGTGA+AGG 0.562148 3:-89302772 None:intergenic
CAATTTGCAGCTCAACAAGC+AGG 0.562189 3:-89302366 None:intergenic
CTCTAAGCTGACTAAGGCTG+AGG 0.562519 3:-89300384 None:intergenic
GCAGGAGCTCATTGCCCAGA+AGG 0.562853 3:+89301138 MsG0380016905.01.T01:CDS
AAGAACTGACTAACAAGAAG+AGG 0.565105 3:+89301745 MsG0380016905.01.T01:CDS
CTAAAAGGCAAGAGTAGCGA+GGG 0.567054 3:-89302676 None:intergenic
TGCAGCTCAACAAGCAGGTG+AGG 0.569589 3:-89302361 None:intergenic
GAAGCACATTGACCGTAAAG+TGG 0.570384 3:+89300802 MsG0380016905.01.T01:CDS
TGAATTGGCATGCCTGAGTA+GGG 0.572022 3:-89301711 None:intergenic
CGCGATATGGAAAACTGAAG+TGG 0.573314 3:+89301488 MsG0380016905.01.T01:CDS
TCAGCTTATTGAGGTGAAAG+AGG 0.574832 3:+89300462 MsG0380016905.01.T01:CDS
TGGCACCTGGAGGGACTGAT+CGG 0.577271 3:+89300822 MsG0380016905.01.T01:CDS
CGTCATCCTGAGTATTGTCT+GGG 0.578265 3:-89301623 None:intergenic
CGAAGATGGTTCAACCCTGA+CGG 0.579824 3:+89300848 MsG0380016905.01.T01:CDS
TACTAGGAAGGAAGAGGACT+CGG 0.580045 3:+89300291 MsG0380016905.01.T01:CDS
CTTGGATGACGTCCGCGAGG+AGG 0.584682 3:+89300901 MsG0380016905.01.T01:CDS
TCTTCCATGAACTTAGTGGT+TGG 0.588265 3:-89302331 None:intergenic
CAGCATCCTGACAAGGGGCA+CGG 0.588448 3:-89300973 None:intergenic
CAATACTCAGGATGACGGAT+TGG 0.588917 3:+89301629 MsG0380016905.01.T01:CDS
CGGATGGCCCTAACAGTGGA+TGG 0.589422 3:-89300953 None:intergenic
CTTGCAAGGAACTTATGAAG+TGG 0.591648 3:+89301279 MsG0380016905.01.T01:CDS
TCTTCAAGAAAACACTCTTG+TGG 0.592785 3:-89301687 None:intergenic
TCTTCCTTCCTAGTAACAGA+AGG 0.594292 3:-89300283 None:intergenic
TTATGGAGTATTGGTTGGAG+AGG 0.594798 3:+89300873 MsG0380016905.01.T01:CDS
ACCGTAAAGTGGCACCTGGA+GGG 0.600671 3:+89300813 MsG0380016905.01.T01:CDS
TCAGCTGCCCGTAAATACAT+TGG 0.601607 3:+89300752 MsG0380016905.01.T01:CDS
GAGGTGAAAGAGGAGCCTTA+TGG 0.602537 3:+89300439 MsG0380016905.01.T01:CDS
AGGATAGATGGTCAAGCGAG+AGG 0.602598 3:+89300539 MsG0380016905.01.T01:CDS
CAGCCTTAGTCAGCTTAGAG+AGG 0.603304 3:+89300387 MsG0380016905.01.T01:CDS
CACTAACCCAGACAATACTC+AGG 0.613204 3:+89301617 MsG0380016905.01.T01:CDS
AAGAATCAGCATCCTGACAA+GGG 0.613306 3:-89300979 None:intergenic
GGGCCTAAGAACAACTTAGT+CGG 0.615463 3:-89302656 None:intergenic
AGTCCATGATTTCAGTTAGG+CGG 0.616197 3:-89301319 None:intergenic
TAGAATTCAACATCAGTGAA+GGG 0.620272 3:-89302771 None:intergenic
AATCTAATGTAGGTACAAGT+CGG 0.623854 3:+89300652 MsG0380016905.01.T01:intron
GGCACGGATGGCCCTAACAG+TGG 0.626312 3:-89300957 None:intergenic
ATTGACCGTAAAGTGGCACC+TGG 0.626391 3:+89300809 MsG0380016905.01.T01:CDS
GCTGATACCCACAATGCAAG+AGG 0.632260 3:+89301910 MsG0380016905.01.T01:CDS
ACTAAAAGGCAAGAGTAGCG+AGG 0.637851 3:-89302677 None:intergenic
CCAGACAATACTCAGGATGA+CGG 0.639358 3:+89301624 MsG0380016905.01.T01:CDS
AACAGTTGTAGAAGAATCTG+GGG 0.639407 3:-89301948 None:intergenic
GCCGACAACACAGTGCGAGT+TGG 0.640849 3:-89299457 None:intergenic
TGGATGGTGGTATCCAATAG+GGG 0.643639 3:-89300937 None:intergenic
AGTCGGCTGAACAAAGCATG+TGG 0.643899 3:+89300669 MsG0380016905.01.T01:CDS
TGACTATGATTTGAGCAATG+TGG 0.648510 3:+89299345 MsG0380016905.01.T01:five_prime_UTR
GTCGGCTGAACAAAGCATGT+GGG 0.649689 3:+89300670 MsG0380016905.01.T01:CDS
GTCTTGTGAGAAGCTTAGAG+AGG 0.651620 3:+89300420 MsG0380016905.01.T01:CDS
GGCTGAACAAAGCATGTGGG+AGG 0.654214 3:+89300673 MsG0380016905.01.T01:CDS
AACTGAAAGTAACATGATGG+AGG 0.656525 3:+89301168 MsG0380016905.01.T01:CDS
CATCAACCCCAGCCTCCTCG+CGG 0.661718 3:-89300913 None:intergenic
AGAATCAGCATCCTGACAAG+GGG 0.662008 3:-89300978 None:intergenic
GGGAGGTGCTGAAGGCAGAG+GGG 0.662463 3:+89300690 MsG0380016905.01.T01:CDS
GACCGTAAAGTGGCACCTGG+AGG 0.665408 3:+89300812 MsG0380016905.01.T01:CDS
TCTTTCACTACTTTCTCGCG+AGG 0.672061 3:-89299308 None:intergenic
AATACTCCATAATTCCGTCA+GGG 0.681790 3:-89300862 None:intergenic
TCAATGGCAGAAGACTTGCA+AGG 0.688837 3:+89301265 MsG0380016905.01.T01:intron
GCTGCAGGGATGGATAGGTG+GGG 0.693071 3:+89300214 MsG0380016905.01.T01:exon
ATGGCCCTAACAGTGGATGG+TGG 0.700088 3:-89300950 None:intergenic
ACTATGATTTGAGCAATGTG+GGG 0.707382 3:+89299347 MsG0380016905.01.T01:five_prime_UTR
TGACTTGGATGACGTCCGCG+AGG 0.712793 3:+89300898 MsG0380016905.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCTAATAATTTTATT+TGG + Chr3:89301102-89301121 MsG0380016905.01.T01:intron 10.0%
!! ATTAACTCTATATAATTACT+TGG - Chr3:89300627-89300646 None:intergenic 15.0%
!! GTATATATTCAAGATTTAAT+GGG + Chr3:89301359-89301378 MsG0380016905.01.T01:intron 15.0%
!!! TGAATGCTTTAATATTTTAA+TGG + Chr3:89301198-89301217 MsG0380016905.01.T01:intron 15.0%
!! AATAGATCATGAATATAAGA+AGG - Chr3:89302070-89302089 None:intergenic 20.0%
!! GCTATCCAAATAAAATTATT+AGG - Chr3:89301110-89301129 None:intergenic 20.0%
!! GGTATATATTCAAGATTTAA+TGG + Chr3:89301358-89301377 MsG0380016905.01.T01:intron 20.0%
!! TGTTTATGGATTTATTCAAA+TGG + Chr3:89302107-89302126 MsG0380016905.01.T01:CDS 20.0%
!! TTACTATCTGGAAAATATAT+TGG - Chr3:89300352-89300371 None:intergenic 20.0%
!!! AAATTAACTTTTTTCCTTCT+TGG - Chr3:89301843-89301862 None:intergenic 20.0%
! AAAACGCGAATTGAAAAAAT+GGG - Chr3:89299543-89299562 None:intergenic 25.0%
! AACTCTATATAATTACTTGG+TGG - Chr3:89300624-89300643 None:intergenic 25.0%
! AATAGCTCATACATTAGAAA+AGG - Chr3:89299925-89299944 None:intergenic 25.0%
! AGATCAAACTATACTGTAAA+AGG - Chr3:89302408-89302427 None:intergenic 25.0%
! AGGTTATATAGAGAAGATAT+TGG + Chr3:89299801-89299820 MsG0380016905.01.T01:intron 25.0%
! AGTAAAAACATTGGATTTCT+TGG - Chr3:89299896-89299915 None:intergenic 25.0%
! ATATGTGATTAAATCAACCT+TGG + Chr3:89300064-89300083 MsG0380016905.01.T01:intron 25.0%
! ATTCAAATGGAAAGAAAAGA+TGG + Chr3:89302120-89302139 MsG0380016905.01.T01:CDS 25.0%
! ATTGAAAAAATGGGAGAAAT+TGG - Chr3:89299534-89299553 None:intergenic 25.0%
! CAACATGACTATTATTTCAA+AGG - Chr3:89301886-89301905 None:intergenic 25.0%
! GAAACTGCTTAAAATAGAAA+TGG + Chr3:89301012-89301031 MsG0380016905.01.T01:CDS 25.0%
! GGAGAAATCAAACAAATAAA+AGG - Chr3:89301408-89301427 None:intergenic 25.0%
! GTATAGTTTGATCTAATTTG+AGG + Chr3:89302414-89302433 MsG0380016905.01.T01:three_prime_UTR 25.0%
! TGCTTTATGTTGAATTTCAA+TGG + Chr3:89301249-89301268 MsG0380016905.01.T01:intron 25.0%
! TTAATCATGCAATCTAATGT+AGG + Chr3:89300642-89300661 MsG0380016905.01.T01:intron 25.0%
! TTACAAACGACAGTTAATTA+TGG - Chr3:89299980-89299999 None:intergenic 25.0%
! TTCTACAACTGTTAATTCAA+AGG + Chr3:89301958-89301977 MsG0380016905.01.T01:CDS 25.0%
! TTGAAATAATAGTCATGTTG+AGG + Chr3:89301886-89301905 MsG0380016905.01.T01:intron 25.0%
! TTTCTAATGTATGAGCTATT+GGG + Chr3:89299925-89299944 MsG0380016905.01.T01:intron 25.0%
!! ATTTTCCAGATAGTAAGAAA+AGG + Chr3:89300356-89300375 MsG0380016905.01.T01:CDS 25.0%
!! ATTTTGTAATTCACACCTAT+AGG - Chr3:89302631-89302650 None:intergenic 25.0%
!! CGTACTTTGTTTCTTAATTT+GGG + Chr3:89299601-89299620 MsG0380016905.01.T01:intron 25.0%
!! TCGTACTTTGTTTCTTAATT+TGG + Chr3:89299600-89299619 MsG0380016905.01.T01:intron 25.0%
!! TGTAGTTCTGTATATTAACA+GGG + Chr3:89301450-89301469 MsG0380016905.01.T01:intron 25.0%
!! TGTTTCTTAATTTGGGATTA+GGG + Chr3:89299608-89299627 MsG0380016905.01.T01:intron 25.0%
!! TTGTTTCTTAATTTGGGATT+AGG + Chr3:89299607-89299626 MsG0380016905.01.T01:intron 25.0%
!! TTTTCTAATGTATGAGCTAT+TGG + Chr3:89299924-89299943 MsG0380016905.01.T01:intron 25.0%
!!! TGATCTATTATTTTTCTTGC+AGG + Chr3:89302081-89302100 MsG0380016905.01.T01:intron 25.0%
!!! TTCTCTTCTTACGTTATTTT+TGG + Chr3:89299430-89299449 MsG0380016905.01.T01:five_prime_UTR 25.0%
!!! TTGATTACTCTTTGATTTGA+TGG + Chr3:89299757-89299776 MsG0380016905.01.T01:intron 25.0%
AAAATGGGAGAAATTGGAAA+AGG - Chr3:89299528-89299547 None:intergenic 30.0%
AAGGAAAAAATGGGAATAAG+TGG - Chr3:89302041-89302060 None:intergenic 30.0%
AAGTACAAGTTCTCATTGAA+TGG - Chr3:89302557-89302576 None:intergenic 30.0%
AAGTTCAGTACTTCTTCATT+TGG - Chr3:89301039-89301058 None:intergenic 30.0%
AATCTAATGTAGGTACAAGT+CGG + Chr3:89300652-89300671 MsG0380016905.01.T01:intron 30.0%
AGATCATGAATATAAGAAGG+TGG - Chr3:89302067-89302086 None:intergenic 30.0%
AGTATCACCAATGTATTTAC+GGG - Chr3:89300762-89300781 None:intergenic 30.0%
AGTTCAGTACTTCTTCATTT+GGG - Chr3:89301038-89301057 None:intergenic 30.0%
CAAAACGCGAATTGAAAAAA+TGG - Chr3:89299544-89299563 None:intergenic 30.0%
CAATAACCTAAAAGCTTAGT+AGG - Chr3:89300105-89300124 None:intergenic 30.0%
CAGTATCACCAATGTATTTA+CGG - Chr3:89300763-89300782 None:intergenic 30.0%
CTAGCTAACATGTAAAATAC+CGG - Chr3:89302532-89302551 None:intergenic 30.0%
CTTCAGAAAAATGGAAAGAT+TGG + Chr3:89301586-89301605 MsG0380016905.01.T01:CDS 30.0%
GAAAACTGAAAGTAACATGA+TGG + Chr3:89301165-89301184 MsG0380016905.01.T01:CDS 30.0%
GAAGAAAACTTGTGAAGAAA+AGG - Chr3:89302244-89302263 None:intergenic 30.0%
GATGTATCAAACACTGTATA+TGG + Chr3:89302157-89302176 MsG0380016905.01.T01:CDS 30.0%
TAACAGTTGTAGAAGAATCT+GGG - Chr3:89301952-89301971 None:intergenic 30.0%
TAAGTCAGATATCACATAAG+TGG - Chr3:89301429-89301448 None:intergenic 30.0%
TAGAATTCAACATCAGTGAA+GGG - Chr3:89302774-89302793 None:intergenic 30.0%
TGGTTGTATTATTGTCTTGT+TGG + Chr3:89302460-89302479 MsG0380016905.01.T01:three_prime_UTR 30.0%
TTAACAGTTGTAGAAGAATC+TGG - Chr3:89301953-89301972 None:intergenic 30.0%
TTAGAATTCAACATCAGTGA+AGG - Chr3:89302775-89302794 None:intergenic 30.0%
TTCTTCTTTACTCGTAAAAC+TGG + Chr3:89302258-89302277 MsG0380016905.01.T01:three_prime_UTR 30.0%
! ATAGAGAAGATATTGGTTGT+AGG + Chr3:89299808-89299827 MsG0380016905.01.T01:intron 30.0%
! CTGTAGTTCTGTATATTAAC+AGG + Chr3:89301449-89301468 MsG0380016905.01.T01:intron 30.0%
! GTATTATTGTCTTGTTGGTT+AGG + Chr3:89302465-89302484 MsG0380016905.01.T01:three_prime_UTR 30.0%
! TAGAGAAGATATTGGTTGTA+GGG + Chr3:89299809-89299828 MsG0380016905.01.T01:intron 30.0%
! TTCAGTTTTCTTTTCCTTCT+GGG - Chr3:89301155-89301174 None:intergenic 30.0%
! TTTCAGTTTTCTTTTCCTTC+TGG - Chr3:89301156-89301175 None:intergenic 30.0%
!! CAATCTTTCCATTTTTCTGA+AGG - Chr3:89301588-89301607 None:intergenic 30.0%
!! TCTTTTTAGTACAGGTCTTT+AGG + Chr3:89302497-89302516 MsG0380016905.01.T01:three_prime_UTR 30.0%
!! TTACCAGTTCTTTTTAGTAC+AGG + Chr3:89302489-89302508 MsG0380016905.01.T01:three_prime_UTR 30.0%
!! TTCGTGATAATGTATTTTGC+TGG + Chr3:89299719-89299738 MsG0380016905.01.T01:intron 30.0%
!!! ACTCTTGCCTTTTAGTTTAA+TGG + Chr3:89302684-89302703 MsG0380016905.01.T01:three_prime_UTR 30.0%
AACAGTTGTAGAAGAATCTG+GGG - Chr3:89301951-89301970 None:intergenic 35.0%
AACTGAAAGTAACATGATGG+AGG + Chr3:89301168-89301187 MsG0380016905.01.T01:CDS 35.0%
AAGAACTGACTAACAAGAAG+AGG + Chr3:89301745-89301764 MsG0380016905.01.T01:CDS 35.0%
AAGAGTCCATGATTTCAGTT+AGG - Chr3:89301325-89301344 None:intergenic 35.0%
AAGGTGGTAGAAGGAAAAAA+TGG - Chr3:89302051-89302070 None:intergenic 35.0%
AATACTCCATAATTCCGTCA+GGG - Chr3:89300865-89300884 None:intergenic 35.0%
ACTATGATTTGAGCAATGTG+GGG + Chr3:89299347-89299366 MsG0380016905.01.T01:five_prime_UTR 35.0%
AGACCTGTACTAAAAAGAAC+TGG - Chr3:89302495-89302514 None:intergenic 35.0%
AGGCAAGCAAGTAAAAACAT+TGG - Chr3:89299905-89299924 None:intergenic 35.0%
AGGTGGTAGAAGGAAAAAAT+GGG - Chr3:89302050-89302069 None:intergenic 35.0%
ATGAAGTAGACATCTCTTTG+AGG + Chr3:89302190-89302209 MsG0380016905.01.T01:exon 35.0%
GAAAACTTGTGAAGAAAAGG+TGG - Chr3:89302241-89302260 None:intergenic 35.0%
GAAACAAAGTACGAAGAAAC+TGG - Chr3:89299594-89299613 None:intergenic 35.0%
GAATATAAGAAGGTGGTAGA+AGG - Chr3:89302060-89302079 None:intergenic 35.0%
GACTATGATTTGAGCAATGT+GGG + Chr3:89299346-89299365 MsG0380016905.01.T01:five_prime_UTR 35.0%
GGTGGTTATAATCCTATTCT+AGG - Chr3:89302223-89302242 None:intergenic 35.0%
GTATATTAACAGGGCAAGTA+TGG + Chr3:89301459-89301478 MsG0380016905.01.T01:intron 35.0%
GTCTTCAACAGGAATGAAAT+TGG + Chr3:89302440-89302459 MsG0380016905.01.T01:three_prime_UTR 35.0%
TAGTGAAGTGAAATGCGATA+AGG + Chr3:89299781-89299800 MsG0380016905.01.T01:intron 35.0%
TCATCTTGTAGATGTCCTAT+AGG + Chr3:89302613-89302632 MsG0380016905.01.T01:three_prime_UTR 35.0%
TCTTCAAGAAAACACTCTTG+TGG - Chr3:89301690-89301709 None:intergenic 35.0%
TGACTATGATTTGAGCAATG+TGG + Chr3:89299345-89299364 MsG0380016905.01.T01:five_prime_UTR 35.0%
TTAGTCAGTTCTTCATTGAG+TGG - Chr3:89301738-89301757 None:intergenic 35.0%
TTAGTCCTCCTTCAGAAAAA+TGG + Chr3:89301577-89301596 MsG0380016905.01.T01:CDS 35.0%
TTTAGTACAGGTCTTTAGGT+AGG + Chr3:89302501-89302520 MsG0380016905.01.T01:three_prime_UTR 35.0%
TTTCTTGCAGGAGATGTTTA+TGG + Chr3:89302093-89302112 MsG0380016905.01.T01:intron 35.0%
! AGTTTGATCTAATTTGAGGC+AGG + Chr3:89302418-89302437 MsG0380016905.01.T01:three_prime_UTR 35.0%
! CGTAAATACATTGGTGATAC+TGG + Chr3:89300761-89300780 MsG0380016905.01.T01:CDS 35.0%
! GTTCTTTTCCTTCTGTTACT+AGG + Chr3:89300275-89300294 MsG0380016905.01.T01:CDS 35.0%
! TTGTTTAACTTAGAGCTGCA+GGG + Chr3:89300200-89300219 MsG0380016905.01.T01:five_prime_UTR 35.0%
! TTTGTTTAACTTAGAGCTGC+AGG + Chr3:89300199-89300218 MsG0380016905.01.T01:five_prime_UTR 35.0%
! TTTTCCTTCTGTTACTAGGA+AGG + Chr3:89300279-89300298 MsG0380016905.01.T01:CDS 35.0%
!! CAACTCGTTGATAATGTTTC+AGG + Chr3:89301991-89302010 MsG0380016905.01.T01:CDS 35.0%
!! TCTTTCCATTTTTCTGAAGG+AGG - Chr3:89301585-89301604 None:intergenic 35.0%
!!! CTTGCCTTTTAGTTTAATGG+TGG + Chr3:89302687-89302706 MsG0380016905.01.T01:three_prime_UTR 35.0%
AACCACTAAGTTCATGGAAG+AGG + Chr3:89302333-89302352 MsG0380016905.01.T01:three_prime_UTR 40.0%
AACCTCTTCCATGAACTTAG+TGG - Chr3:89302338-89302357 None:intergenic 40.0%
AAGAATCAGCATCCTGACAA+GGG - Chr3:89300982-89301001 None:intergenic 40.0%
AAGCTTAGTAGGTGATCCAT+TGG - Chr3:89300094-89300113 None:intergenic 40.0%
ACCTCAATAAGCTGACCATA+AGG - Chr3:89300457-89300476 None:intergenic 40.0%
AGCATGACAGTAAGGATAGA+TGG + Chr3:89300527-89300546 MsG0380016905.01.T01:CDS 40.0%
AGCTTAGTAGGTGATCCATT+GGG - Chr3:89300093-89300112 None:intergenic 40.0%
AGTCCATGATTTCAGTTAGG+CGG - Chr3:89301322-89301341 None:intergenic 40.0%
AGTCCGACTAAGTTGTTCTT+AGG + Chr3:89302653-89302672 MsG0380016905.01.T01:three_prime_UTR 40.0%
CAATACTCCATAATTCCGTC+AGG - Chr3:89300866-89300885 None:intergenic 40.0%
CTGACGGAATTATGGAGTAT+TGG + Chr3:89300864-89300883 MsG0380016905.01.T01:CDS 40.0%
CTTGCAAGGAACTTATGAAG+TGG + Chr3:89301279-89301298 MsG0380016905.01.T01:CDS 40.0%
TCAGCTTATTGAGGTGAAAG+AGG + Chr3:89300462-89300481 MsG0380016905.01.T01:CDS 40.0%
TCTTCATTGAGTGGCTGAAT+TGG - Chr3:89301729-89301748 None:intergenic 40.0%
TCTTCCATGAACTTAGTGGT+TGG - Chr3:89302334-89302353 None:intergenic 40.0%
TCTTCCTTCCTAGTAACAGA+AGG - Chr3:89300286-89300305 None:intergenic 40.0%
TGAAGTGGAGCAACATCTTA+TGG + Chr3:89301503-89301522 MsG0380016905.01.T01:CDS 40.0%
TTAGTACAGGTCGGGTTATT+GGG - Chr3:89300730-89300749 None:intergenic 40.0%
TTCTGTTACTAGGAAGGAAG+AGG + Chr3:89300285-89300304 MsG0380016905.01.T01:CDS 40.0%
TTTCTTGAAGATCCCTACTC+AGG + Chr3:89301699-89301718 MsG0380016905.01.T01:CDS 40.0%
TTTGCCAACCACTAAGTTCA+TGG + Chr3:89302327-89302346 MsG0380016905.01.T01:three_prime_UTR 40.0%
TTTGGATAGCAGAGATATGC+AGG + Chr3:89301120-89301139 MsG0380016905.01.T01:intron 40.0%
! CGCTTCCTTTTCTTACTATC+TGG - Chr3:89300364-89300383 None:intergenic 40.0%
! GAGAAAGAAGCATGACAGTA+AGG + Chr3:89300519-89300538 MsG0380016905.01.T01:CDS 40.0%
! GGACTCTTTGAAGAATTTGC+AGG + Chr3:89301337-89301356 MsG0380016905.01.T01:CDS 40.0%
! GGATCACCTACTAAGCTTTT+AGG + Chr3:89300096-89300115 MsG0380016905.01.T01:intron 40.0%
! TTCTGAAGGAGGACTAAAAG+TGG - Chr3:89301574-89301593 None:intergenic 40.0%
! TTTGAGCAATGTGGGGTTTT+TGG + Chr3:89299354-89299373 MsG0380016905.01.T01:five_prime_UTR 40.0%
!! AGACATCTCTTTGAGGTATC+AGG + Chr3:89302197-89302216 MsG0380016905.01.T01:exon 40.0%
!! CGGAATTATGGAGTATTGGT+TGG + Chr3:89300868-89300887 MsG0380016905.01.T01:CDS 40.0%
!! TATGGAGTATTGGTTGGAGA+GGG + Chr3:89300874-89300893 MsG0380016905.01.T01:CDS 40.0%
!! TTATGGAGTATTGGTTGGAG+AGG + Chr3:89300873-89300892 MsG0380016905.01.T01:CDS 40.0%
!!! CCTTTTAGTTTAATGGTGGC+GGG + Chr3:89302691-89302710 MsG0380016905.01.T01:three_prime_UTR 40.0%
!!! GCCTTTTAGTTTAATGGTGG+CGG + Chr3:89302690-89302709 MsG0380016905.01.T01:three_prime_UTR 40.0%
ACTAAAAGGCAAGAGTAGCG+AGG - Chr3:89302680-89302699 None:intergenic 45.0%
AGAATCAGCATCCTGACAAG+GGG - Chr3:89300981-89301000 None:intergenic 45.0%
AGCTGATCTTAGTACAGGTC+GGG - Chr3:89300738-89300757 None:intergenic 45.0%
AGTATGGTGAGTTCGCGATA+TGG + Chr3:89301475-89301494 MsG0380016905.01.T01:CDS 45.0%
CAACCGCCTAACTGAAATCA+TGG + Chr3:89301316-89301335 MsG0380016905.01.T01:CDS 45.0%
CAATTTGCAGCTCAACAAGC+AGG - Chr3:89302369-89302388 None:intergenic 45.0%
CACTAACCCAGACAATACTC+AGG + Chr3:89301617-89301636 MsG0380016905.01.T01:CDS 45.0%
CAGCTGATCTTAGTACAGGT+CGG - Chr3:89300739-89300758 None:intergenic 45.0%
CATCGTCAACAGGCATTCAT+TGG + Chr3:89300241-89300260 MsG0380016905.01.T01:CDS 45.0%
CCAGACAATACTCAGGATGA+CGG + Chr3:89301624-89301643 MsG0380016905.01.T01:CDS 45.0%
CCCGCCACCATTAAACTAAA+AGG - Chr3:89302694-89302713 None:intergenic 45.0%
CGCGATATGGAAAACTGAAG+TGG + Chr3:89301488-89301507 MsG0380016905.01.T01:CDS 45.0%
CTAAAAGGCAAGAGTAGCGA+GGG - Chr3:89302679-89302698 None:intergenic 45.0%
CTAAAAGTGGTGCACTCTCT+TGG - Chr3:89301561-89301580 None:intergenic 45.0%
CTTAGTACAGGTCGGGTTAT+TGG - Chr3:89300731-89300750 None:intergenic 45.0%
GAAGAATCAGCATCCTGACA+AGG - Chr3:89300983-89301002 None:intergenic 45.0%
GAAGCACATTGACCGTAAAG+TGG + Chr3:89300802-89300821 MsG0380016905.01.T01:CDS 45.0%
GAAGCTTAGAGAGGTGAAAG+AGG + Chr3:89300429-89300448 MsG0380016905.01.T01:CDS 45.0%
GATACCACCATCCACTGTTA+GGG + Chr3:89300946-89300965 MsG0380016905.01.T01:CDS 45.0%
GCCTTATGGTCAGCTTATTG+AGG + Chr3:89300453-89300472 MsG0380016905.01.T01:CDS 45.0%
GGGCCTAAGAACAACTTAGT+CGG - Chr3:89302659-89302678 None:intergenic 45.0%
GGTCAATGTGCTTCAGTAAG+TGG - Chr3:89300796-89300815 None:intergenic 45.0%
GGTTGATCCTCTTGCATTGT+GGG - Chr3:89301920-89301939 None:intergenic 45.0%
GTCAACAGGCATTCATTGGT+TGG + Chr3:89300245-89300264 MsG0380016905.01.T01:CDS 45.0%
GTCTTGTGAGAAGCTTAGAG+AGG + Chr3:89300420-89300439 MsG0380016905.01.T01:CDS 45.0%
GTTCAACCCTGACGGAATTA+TGG + Chr3:89300856-89300875 MsG0380016905.01.T01:CDS 45.0%
TACTAGGAAGGAAGAGGACT+CGG + Chr3:89300291-89300310 MsG0380016905.01.T01:CDS 45.0%
TCAATGGCAGAAGACTTGCA+AGG + Chr3:89301265-89301284 MsG0380016905.01.T01:intron 45.0%
TCACCTCTCTAAGCTGACTA+AGG - Chr3:89300393-89300412 None:intergenic 45.0%
TCAGCTGCCCGTAAATACAT+TGG + Chr3:89300752-89300771 MsG0380016905.01.T01:CDS 45.0%
TCTTTCACTACTTTCTCGCG+AGG - Chr3:89299311-89299330 None:intergenic 45.0%
TGAATTGGCATGCCTGAGTA+GGG - Chr3:89301714-89301733 None:intergenic 45.0%
TGCAAGTGCAAGTGCTTTGT+CGG - Chr3:89300175-89300194 None:intergenic 45.0%
TGGAGGTGGAAAAACCAAGA+AGG + Chr3:89301826-89301845 MsG0380016905.01.T01:intron 45.0%
TTAACTTAGAGCTGCAGGGA+TGG + Chr3:89300204-89300223 MsG0380016905.01.T01:exon 45.0%
! AATCAACCTTGGTGACCCAA+TGG + Chr3:89300075-89300094 MsG0380016905.01.T01:intron 45.0%
! AGGTGAAAGAGGAGTATGCT+GGG + Chr3:89300473-89300492 MsG0380016905.01.T01:CDS 45.0%
! AGGTTGATCCTCTTGCATTG+TGG - Chr3:89301921-89301940 None:intergenic 45.0%
! AGTGGATGGTGGTATCCAAT+AGG - Chr3:89300942-89300961 None:intergenic 45.0%
! ATTTGAGGCAGGTCTTCAAC+AGG + Chr3:89302429-89302448 MsG0380016905.01.T01:three_prime_UTR 45.0%
! CGTCATCCTGAGTATTGTCT+GGG - Chr3:89301626-89301645 None:intergenic 45.0%
! GAAGAATCTGGGGTGACATT+AGG - Chr3:89301941-89301960 None:intergenic 45.0%
! GTGGATGGTGGTATCCAATA+GGG - Chr3:89300941-89300960 None:intergenic 45.0%
! GTTGCTAATGCAGCTGACTT+TGG + Chr3:89300145-89300164 MsG0380016905.01.T01:intron 45.0%
! TGAGGTATCAGGCCTAGAAT+AGG + Chr3:89302208-89302227 MsG0380016905.01.T01:three_prime_UTR 45.0%
! TGGATGGTGGTATCCAATAG+GGG - Chr3:89300940-89300959 None:intergenic 45.0%
! TTTTCCACCTCCAAGGAGAT+GGG - Chr3:89301819-89301838 None:intergenic 45.0%
! TTTTTCCACCTCCAAGGAGA+TGG - Chr3:89301820-89301839 None:intergenic 45.0%
!! ACGGATTGGCAACTTGGATA+GGG + Chr3:89301643-89301662 MsG0380016905.01.T01:CDS 45.0%
!! CAATACTCAGGATGACGGAT+TGG + Chr3:89301629-89301648 MsG0380016905.01.T01:CDS 45.0%
!! TCTTGGTTTTTCCACCTCCA+AGG - Chr3:89301826-89301845 None:intergenic 45.0%
!! TTAGTTTAATGGTGGCGGGT+GGG + Chr3:89302695-89302714 MsG0380016905.01.T01:three_prime_UTR 45.0%
!! TTTAGTTTAATGGTGGCGGG+TGG + Chr3:89302694-89302713 MsG0380016905.01.T01:three_prime_UTR 45.0%
!!! AATATCAAAATAATATTTTA+TGG + Chr3:89301067-89301086 MsG0380016905.01.T01:intron 5.0%
AAAGATGGAGCAGCAGCTGT+TGG + Chr3:89302135-89302154 MsG0380016905.01.T01:CDS 50.0%
ACCAACTCGCACTGTGTTGT+CGG + Chr3:89299456-89299475 MsG0380016905.01.T01:five_prime_UTR 50.0%
AGATGGGCGTGCATGTTTGA+GGG - Chr3:89301803-89301822 None:intergenic 50.0%
AGGATAGATGGTCAAGCGAG+AGG + Chr3:89300539-89300558 MsG0380016905.01.T01:CDS 50.0%
AGTCGGCTGAACAAAGCATG+TGG + Chr3:89300669-89300688 MsG0380016905.01.T01:CDS 50.0%
ATTGACCGTAAAGTGGCACC+TGG + Chr3:89300809-89300828 MsG0380016905.01.T01:CDS 50.0%
CAGCCTTAGTCAGCTTAGAG+AGG + Chr3:89300387-89300406 MsG0380016905.01.T01:CDS 50.0%
CGAAGATGGTTCAACCCTGA+CGG + Chr3:89300848-89300867 MsG0380016905.01.T01:CDS 50.0%
CGTCAGGGTTGAACCATCTT+CGG - Chr3:89300850-89300869 None:intergenic 50.0%
CTCTAAGCTGACTAAGGCTG+AGG - Chr3:89300387-89300406 None:intergenic 50.0%
CTGAATTGGCATGCCTGAGT+AGG - Chr3:89301715-89301734 None:intergenic 50.0%
CTTCTTCGCGCTTCTTGGTA+GGG + Chr3:89299498-89299517 MsG0380016905.01.T01:intron 50.0%
GAGGTGAAAGAGGAGCCTTA+TGG + Chr3:89300439-89300458 MsG0380016905.01.T01:CDS 50.0%
GCTGATACCCACAATGCAAG+AGG + Chr3:89301910-89301929 MsG0380016905.01.T01:CDS 50.0%
GGATACCACCATCCACTGTT+AGG + Chr3:89300945-89300964 MsG0380016905.01.T01:CDS 50.0%
GGTCTTTAGGTAGGCTTTGC+CGG + Chr3:89302510-89302529 MsG0380016905.01.T01:three_prime_UTR 50.0%
GTCGGCTGAACAAAGCATGT+GGG + Chr3:89300670-89300689 MsG0380016905.01.T01:CDS 50.0%
GTGGGGTTATGTGTCGCATA+TGG + Chr3:89302713-89302732 MsG0380016905.01.T01:three_prime_UTR 50.0%
TCTCTCTTCTTCGCGCTTCT+TGG + Chr3:89299493-89299512 MsG0380016905.01.T01:five_prime_UTR 50.0%
TCTTCTTCGCGCTTCTTGGT+AGG + Chr3:89299497-89299516 MsG0380016905.01.T01:intron 50.0%
TTAGAGCTGCAGGGATGGAT+AGG + Chr3:89300209-89300228 MsG0380016905.01.T01:exon 50.0%
! CCGTCATCCTGAGTATTGTC+TGG - Chr3:89301627-89301646 None:intergenic 50.0%
! GAGGTGAAAGAGGAGTATGC+TGG + Chr3:89300472-89300491 MsG0380016905.01.T01:CDS 50.0%
!! AGGATGACGGATTGGCAACT+TGG + Chr3:89301637-89301656 MsG0380016905.01.T01:CDS 50.0%
!! GACGGATTGGCAACTTGGAT+AGG + Chr3:89301642-89301661 MsG0380016905.01.T01:CDS 50.0%
!! GAGCAATGTGGGGTTTTTGG+CGG + Chr3:89299357-89299376 MsG0380016905.01.T01:five_prime_UTR 50.0%
!! TAGTTTAATGGTGGCGGGTG+GGG + Chr3:89302696-89302715 MsG0380016905.01.T01:three_prime_UTR 50.0%
!!! ATGTGGGGTTTTTGGCGGTT+AGG + Chr3:89299362-89299381 MsG0380016905.01.T01:five_prime_UTR 50.0%
!!! TGTGGGGTTTTTGGCGGTTA+GGG + Chr3:89299363-89299382 MsG0380016905.01.T01:five_prime_UTR 50.0%
AACATGCACGCCCATCTCCT+TGG + Chr3:89301806-89301825 MsG0380016905.01.T01:intron 55.0%
ACCGTAAAGTGGCACCTGGA+GGG + Chr3:89300813-89300832 MsG0380016905.01.T01:CDS 55.0%
AGCTGCAGGGATGGATAGGT+GGG + Chr3:89300213-89300232 MsG0380016905.01.T01:exon 55.0%
ATGGCCCTAACAGTGGATGG+TGG - Chr3:89300953-89300972 None:intergenic 55.0%
CGGGCAGCTGATCTTAGTAC+AGG - Chr3:89300743-89300762 None:intergenic 55.0%
GAGATGGGCGTGCATGTTTG+AGG - Chr3:89301804-89301823 None:intergenic 55.0%
GGCGTGCATGTTTGAGGGTT+TGG - Chr3:89301798-89301817 None:intergenic 55.0%
GGCTGAACAAAGCATGTGGG+AGG + Chr3:89300673-89300692 MsG0380016905.01.T01:CDS 55.0%
GGTGATCCATTGGGTCACCA+AGG - Chr3:89300084-89300103 None:intergenic 55.0%
TGCAGCTCAACAAGCAGGTG+AGG - Chr3:89302364-89302383 None:intergenic 55.0%
TTGGTTGGAGAGGGCTGACT+TGG + Chr3:89300883-89300902 MsG0380016905.01.T01:CDS 55.0%
! GGACTGATCGGTTCCGAAGA+TGG + Chr3:89300834-89300853 MsG0380016905.01.T01:CDS 55.0%
! GTGGGGTGTTCATCGTCAAC+AGG + Chr3:89300231-89300250 MsG0380016905.01.T01:CDS 55.0%
!! AAGCATGTGGGAGGTGCTGA+AGG + Chr3:89300682-89300701 MsG0380016905.01.T01:CDS 55.0%
!! CTGGGGTTGATGACCCCTAT+TGG + Chr3:89300924-89300943 MsG0380016905.01.T01:CDS 55.0%
!! TCCCTCCAGGTGCCACTTTA+CGG - Chr3:89300817-89300836 None:intergenic 55.0%
ATGCACGCCCATCTCCTTGG+AGG + Chr3:89301809-89301828 MsG0380016905.01.T01:intron 60.0%
CAGCATCCTGACAAGGGGCA+CGG - Chr3:89300976-89300995 None:intergenic 60.0%
CGGATGGCCCTAACAGTGGA+TGG - Chr3:89300956-89300975 None:intergenic 60.0%
GACCGTAAAGTGGCACCTGG+AGG + Chr3:89300812-89300831 MsG0380016905.01.T01:CDS 60.0%
GAGCTGCAGGGATGGATAGG+TGG + Chr3:89300212-89300231 MsG0380016905.01.T01:exon 60.0%
GCAGGAGCTCATTGCCCAGA+AGG + Chr3:89301138-89301157 MsG0380016905.01.T01:CDS 60.0%
GCCGACAACACAGTGCGAGT+TGG - Chr3:89299460-89299479 None:intergenic 60.0%
GCTGCAGGGATGGATAGGTG+GGG + Chr3:89300214-89300233 MsG0380016905.01.T01:exon 60.0%
TGGCACCTGGAGGGACTGAT+CGG + Chr3:89300822-89300841 MsG0380016905.01.T01:CDS 60.0%
! ATCCTGACAAGGGGCACGGA+TGG - Chr3:89300972-89300991 None:intergenic 60.0%
! TGACTTGGATGACGTCCGCG+AGG + Chr3:89300898-89300917 MsG0380016905.01.T01:CDS 60.0%
!! TGGGAGGTGCTGAAGGCAGA+GGG + Chr3:89300689-89300708 MsG0380016905.01.T01:CDS 60.0%
ATGACGTCCGCGAGGAGGCT+GGG + Chr3:89300906-89300925 MsG0380016905.01.T01:CDS 65.0%
CACGCCCATCTCCTTGGAGG+TGG + Chr3:89301812-89301831 MsG0380016905.01.T01:intron 65.0%
CATCAACCCCAGCCTCCTCG+CGG - Chr3:89300916-89300935 None:intergenic 65.0%
CGGAACCGATCAGTCCCTCC+AGG - Chr3:89300830-89300849 None:intergenic 65.0%
CTTGGATGACGTCCGCGAGG+AGG + Chr3:89300901-89300920 MsG0380016905.01.T01:CDS 65.0%
GGCACGGATGGCCCTAACAG+TGG - Chr3:89300960-89300979 None:intergenic 65.0%
!! GGAGGTGCTGAAGGCAGAGG+GGG + Chr3:89300691-89300710 MsG0380016905.01.T01:CDS 65.0%
!! GGGAGGTGCTGAAGGCAGAG+GGG + Chr3:89300690-89300709 MsG0380016905.01.T01:CDS 65.0%
!! GTGGGAGGTGCTGAAGGCAG+AGG + Chr3:89300688-89300707 MsG0380016905.01.T01:CDS 65.0%
GATGACGTCCGCGAGGAGGC+TGG + Chr3:89300905-89300924 MsG0380016905.01.T01:CDS 70.0%
GGCCATCCGTGCCCCTTGTC+AGG + Chr3:89300967-89300986 MsG0380016905.01.T01:CDS 70.0%
TGACGTCCGCGAGGAGGCTG+GGG + Chr3:89300907-89300926 MsG0380016905.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 89299307 89302804 89299307 ID=MsG0380016905.01;Name=MsG0380016905.01
Chr3 mRNA 89299307 89302804 89299307 ID=MsG0380016905.01.T01;Parent=MsG0380016905.01;Name=MsG0380016905.01.T01;_AED=0.44;_eAED=0.44;_QI=273|0.85|0.87|1|0.85|0.75|8|606|457
Chr3 exon 89299307 89299514 89299307 ID=MsG0380016905.01.T01:exon:3244;Parent=MsG0380016905.01.T01
Chr3 exon 89300158 89300560 89300158 ID=MsG0380016905.01.T01:exon:3245;Parent=MsG0380016905.01.T01
Chr3 exon 89300664 89301047 89300664 ID=MsG0380016905.01.T01:exon:3246;Parent=MsG0380016905.01.T01
Chr3 exon 89301129 89301189 89301129 ID=MsG0380016905.01.T01:exon:3247;Parent=MsG0380016905.01.T01
Chr3 exon 89301275 89301358 89301275 ID=MsG0380016905.01.T01:exon:3248;Parent=MsG0380016905.01.T01
Chr3 exon 89301471 89301766 89301471 ID=MsG0380016905.01.T01:exon:3249;Parent=MsG0380016905.01.T01
Chr3 exon 89301898 89302012 89301898 ID=MsG0380016905.01.T01:exon:3250;Parent=MsG0380016905.01.T01
Chr3 exon 89302103 89302804 89302103 ID=MsG0380016905.01.T01:exon:3251;Parent=MsG0380016905.01.T01
Chr3 five_prime_UTR 89299307 89299514 89299307 ID=MsG0380016905.01.T01:five_prime_utr;Parent=MsG0380016905.01.T01
Chr3 five_prime_UTR 89300158 89300222 89300158 ID=MsG0380016905.01.T01:five_prime_utr;Parent=MsG0380016905.01.T01
Chr3 CDS 89300223 89300560 89300223 ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3 CDS 89300664 89301047 89300664 ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3 CDS 89301129 89301189 89301129 ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3 CDS 89301275 89301358 89301275 ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3 CDS 89301471 89301766 89301471 ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3 CDS 89301898 89302012 89301898 ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3 CDS 89302103 89302198 89302103 ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3 three_prime_UTR 89302199 89302804 89302199 ID=MsG0380016905.01.T01:three_prime_utr;Parent=MsG0380016905.01.T01
Gene Sequence

>MsG0380016905.01.T01

ATGGATAGGTGGGGTGTTCATCGTCAACAGGCATTCATTGGTTGGCGTGCAAGTTCTTTTCCTTCTGTTACTAGGAAGGAAGAGGACTCGGACAATGACAGAGAAGAAGTAAATGTTAAGAATGAACCAATATATTTTCCAGATAGTAAGAAAAGGAAGCGCCTCAGCCTTAGTCAGCTTAGAGAGGTGAAAGTAGAGTCTTGTGAGAAGCTTAGAGAGGTGAAAGAGGAGCCTTATGGTCAGCTTATTGAGGTGAAAGAGGAGTATGCTGGGAATCAAAGCAGTAGCAAGAATAAGAGAAAGAAGCATGACAGTAAGGATAGATGGTCAAGCGAGAGGTACAAGTCGGCTGAACAAAGCATGTGGGAGGTGCTGAAGGCAGAGGGGGCGACTTTTGAACACCCAATAACCCGACCTGTACTAAGATCAGCTGCCCGTAAATACATTGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTGACCGTAAAGTGGCACCTGGAGGGACTGATCGGTTCCGAAGATGGTTCAACCCTGACGGAATTATGGAGTATTGGTTGGAGAGGGCTGACTTGGATGACGTCCGCGAGGAGGCTGGGGTTGATGACCCCTATTGGATACCACCATCCACTGTTAGGGCCATCCGTGCCCCTTGTCAGGATGCTGATTCTTCTGCTGAATTGAAACTGCTTAAAATAGAAATGGCCCAAATGAAGAACAGAGATATGCAGGAGCTCATTGCCCAGAAGGAAAAGAAAACTGAAAGTAACATGATGGAGAAGACTTGCAAGGAACTTATGAAGTGGAAAGCTAAAACTGACAACCGCCTAACTGAAATCATGGACTCTTTGAAGAATTTGCAGGGCAAGTATGGTGAGTTCGCGATATGGAAAACTGAAGTGGAGCAACATCTTATGGATATAACAAATAAATTGAATGCTCTTCAAGCACCAAGAGAGTGCACCACTTTTAGTCCTCCTTCAGAAAAATGGAAAGATTGGTTAGAAAACACTAACCCAGACAATACTCAGGATGACGGATTGGCAACTTGGATAGGGAGTTCAGAACTATTTAATGTTCCACAAGAGTGTTTTCTTGAAGATCCCTACTCAGGCATGCCAATTCAGCCACTCAATGAAGAACTGACTAACAAGAAGAGTCATGTTGAGGAGCTGATACCCACAATGCAAGAGGATCAACCTAATGTCACCCCAGATTCTTCTACAACTGTTAATTCAAAGGCAGACGTTGACAACTCGTTGATAATGTTTCAGGAGATGTTTATGGATTTATTCAAATGGAAAGAAAAGATGGAGCAGCAGCTGTTGGATGTATCAAACACTGTATATGGCATGCTAGCAATGAAGTAG

Protein sequence

>MsG0380016905.01.T01

MDRWGVHRQQAFIGWRASSFPSVTRKEEDSDNDREEVNVKNEPIYFPDSKKRKRLSLSQLREVKVESCEKLREVKEEPYGQLIEVKEEYAGNQSSSKNKRKKHDSKDRWSSERYKSAEQSMWEVLKAEGATFEHPITRPVLRSAARKYIGDTGLLDHLLKHIDRKVAPGGTDRFRRWFNPDGIMEYWLERADLDDVREEAGVDDPYWIPPSTVRAIRAPCQDADSSAELKLLKIEMAQMKNRDMQELIAQKEKKTESNMMEKTCKELMKWKAKTDNRLTEIMDSLKNLQGKYGEFAIWKTEVEQHLMDITNKLNALQAPRECTTFSPPSEKWKDWLENTNPDNTQDDGLATWIGSSELFNVPQECFLEDPYSGMPIQPLNEELTNKKSHVEELIPTMQEDQPNVTPDSSTTVNSKADVDNSLIMFQEMFMDLFKWKEKMEQQLLDVSNTVYGMLAMK*