AlfalfaGEDB | MsG0380016905.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016905.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016905.01.T01	XP_013461634.1	96.718	457	13	2	1	457	1	455	0	909

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016905.01.T01	Q9FGN8	44.118	204	96	3	107	293	294	496	8.00E-43	163

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016905.01.T01	A0A072V0W9	96.718	457	13	2	1	457	1	455	0.0	909

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0380016905.01	0.848501	5.887215e-60	1.082739e-56
MsG0080047912.01	MsG0380016905.01	0.810213	1.289058e-50	7.723985e-48
MsG0080048058.01	MsG0380016905.01	0.804177	2.448072e-49	1.253777e-46
MsG0080048383.01	MsG0380016905.01	0.838711	2.444249e-57	3.301558e-54
MsG0080048765.01	MsG0380016905.01	0.818177	2.245583e-52	1.668854e-49
MsG0080048787.01	MsG0380016905.01	0.810461	1.139466e-50	6.872604e-48
MsG0080048856.01	MsG0380016905.01	0.817870	2.635538e-52	1.942167e-49
MsG0080048928.01	MsG0380016905.01	0.808002	3.835653e-50	2.168107e-47
MsG0080048952.01	MsG0380016905.01	0.826336	2.868868e-54	2.682713e-51
MsG0080048968.01	MsG0380016905.01	0.813527	2.446403e-51	1.601548e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016905.01.T01	MTR_3g097570	96.718	457	13	2	1	457	1	455	0.0	909
MsG0380016905.01.T01	MTR_8g446550	42.925	212	110	3	107	317	321	522	1.03e-43	163
MsG0380016905.01.T01	MTR_7g105920	46.632	193	94	5	108	293	265	455	4.13e-42	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016905.01.T01	AT5G23610	37.634	372	199	7	108	453	124	488	1.73e-75	245
MsG0380016905.01.T01	AT5G23610	37.534	373	199	7	108	453	124	489	2.89e-75	244
MsG0380016905.01.T01	AT5G51330	44.118	204	96	3	107	293	290	492	7.83e-44	163
MsG0380016905.01.T01	AT5G51330	44.118	204	96	3	107	293	294	496	8.15e-44	163

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Find 180 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGGAGCAGCAGCTGT+TGG	0.548685	3:+89302135	MsG0380016905.01.T01:CDS
AACAGTTGTAGAAGAATCTG+GGG	0.639407	3:-89301948	None:intergenic
AACCACTAAGTTCATGGAAG+AGG	0.533655	3:+89302333	MsG0380016905.01.T01:three_prime_UTR
AACCTCTTCCATGAACTTAG+TGG	0.380359	3:-89302335	None:intergenic
AACTGAAAGTAACATGATGG+AGG	0.656525	3:+89301168	MsG0380016905.01.T01:CDS
AAGAACTGACTAACAAGAAG+AGG	0.565105	3:+89301745	MsG0380016905.01.T01:CDS
AAGAATCAGCATCCTGACAA+GGG	0.613306	3:-89300979	None:intergenic
AAGAGTCCATGATTTCAGTT+AGG	0.522764	3:-89301322	None:intergenic
AAGCATGTGGGAGGTGCTGA+AGG	0.543073	3:+89300682	MsG0380016905.01.T01:CDS
AAGTACAAGTTCTCATTGAA+TGG	0.433501	3:-89302554	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGGAGAAATTGGAAA+AGG	-	Chr3:89299528-89299547	None:intergenic	30.0%
AAGGAAAAAATGGGAATAAG+TGG	-	Chr3:89302041-89302060	None:intergenic	30.0%
AAGTACAAGTTCTCATTGAA+TGG	-	Chr3:89302557-89302576	None:intergenic	30.0%
AAGTTCAGTACTTCTTCATT+TGG	-	Chr3:89301039-89301058	None:intergenic	30.0%
AATCTAATGTAGGTACAAGT+CGG	+	Chr3:89300652-89300671	MsG0380016905.01.T01:intron	30.0%
AGATCATGAATATAAGAAGG+TGG	-	Chr3:89302067-89302086	None:intergenic	30.0%
AGTATCACCAATGTATTTAC+GGG	-	Chr3:89300762-89300781	None:intergenic	30.0%
AGTTCAGTACTTCTTCATTT+GGG	-	Chr3:89301038-89301057	None:intergenic	30.0%
CAAAACGCGAATTGAAAAAA+TGG	-	Chr3:89299544-89299563	None:intergenic	30.0%
CAATAACCTAAAAGCTTAGT+AGG	-	Chr3:89300105-89300124	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	89299307	89302804	89299307	ID=MsG0380016905.01;Name=MsG0380016905.01
Chr3	mRNA	89299307	89302804	89299307	ID=MsG0380016905.01.T01;Parent=MsG0380016905.01;Name=MsG0380016905.01.T01;_AED=0.44;_eAED=0.44;_QI=273\|0.85\|0.87\|1\|0.85\|0.75\|8\|606\|457
Chr3	exon	89299307	89299514	89299307	ID=MsG0380016905.01.T01:exon:3244;Parent=MsG0380016905.01.T01
Chr3	exon	89300158	89300560	89300158	ID=MsG0380016905.01.T01:exon:3245;Parent=MsG0380016905.01.T01
Chr3	exon	89300664	89301047	89300664	ID=MsG0380016905.01.T01:exon:3246;Parent=MsG0380016905.01.T01
Chr3	exon	89301129	89301189	89301129	ID=MsG0380016905.01.T01:exon:3247;Parent=MsG0380016905.01.T01
Chr3	exon	89301275	89301358	89301275	ID=MsG0380016905.01.T01:exon:3248;Parent=MsG0380016905.01.T01
Chr3	exon	89301471	89301766	89301471	ID=MsG0380016905.01.T01:exon:3249;Parent=MsG0380016905.01.T01
Chr3	exon	89301898	89302012	89301898	ID=MsG0380016905.01.T01:exon:3250;Parent=MsG0380016905.01.T01
Chr3	exon	89302103	89302804	89302103	ID=MsG0380016905.01.T01:exon:3251;Parent=MsG0380016905.01.T01
Chr3	five_prime_UTR	89299307	89299514	89299307	ID=MsG0380016905.01.T01:five_prime_utr;Parent=MsG0380016905.01.T01
Chr3	five_prime_UTR	89300158	89300222	89300158	ID=MsG0380016905.01.T01:five_prime_utr;Parent=MsG0380016905.01.T01
Chr3	CDS	89300223	89300560	89300223	ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3	CDS	89300664	89301047	89300664	ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3	CDS	89301129	89301189	89301129	ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3	CDS	89301275	89301358	89301275	ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3	CDS	89301471	89301766	89301471	ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3	CDS	89301898	89302012	89301898	ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3	CDS	89302103	89302198	89302103	ID=MsG0380016905.01.T01:cds;Parent=MsG0380016905.01.T01
Chr3	three_prime_UTR	89302199	89302804	89302199	ID=MsG0380016905.01.T01:three_prime_utr;Parent=MsG0380016905.01.T01

Gene Sequence

>MsG0380016905.01.T01

ATGGATAGGTGGGGTGTTCATCGTCAACAGGCATTCATTGGTTGGCGTGCAAGTTCTTTTCCTTCTGTTACTAGGAAGGAAGAGGACTCGGACAATGACAGAGAAGAAGTAAATGTTAAGAATGAACCAATATATTTTCCAGATAGTAAGAAAAGGAAGCGCCTCAGCCTTAGTCAGCTTAGAGAGGTGAAAGTAGAGTCTTGTGAGAAGCTTAGAGAGGTGAAAGAGGAGCCTTATGGTCAGCTTATTGAGGTGAAAGAGGAGTATGCTGGGAATCAAAGCAGTAGCAAGAATAAGAGAAAGAAGCATGACAGTAAGGATAGATGGTCAAGCGAGAGGTACAAGTCGGCTGAACAAAGCATGTGGGAGGTGCTGAAGGCAGAGGGGGCGACTTTTGAACACCCAATAACCCGACCTGTACTAAGATCAGCTGCCCGTAAATACATTGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTGACCGTAAAGTGGCACCTGGAGGGACTGATCGGTTCCGAAGATGGTTCAACCCTGACGGAATTATGGAGTATTGGTTGGAGAGGGCTGACTTGGATGACGTCCGCGAGGAGGCTGGGGTTGATGACCCCTATTGGATACCACCATCCACTGTTAGGGCCATCCGTGCCCCTTGTCAGGATGCTGATTCTTCTGCTGAATTGAAACTGCTTAAAATAGAAATGGCCCAAATGAAGAACAGAGATATGCAGGAGCTCATTGCCCAGAAGGAAAAGAAAACTGAAAGTAACATGATGGAGAAGACTTGCAAGGAACTTATGAAGTGGAAAGCTAAAACTGACAACCGCCTAACTGAAATCATGGACTCTTTGAAGAATTTGCAGGGCAAGTATGGTGAGTTCGCGATATGGAAAACTGAAGTGGAGCAACATCTTATGGATATAACAAATAAATTGAATGCTCTTCAAGCACCAAGAGAGTGCACCACTTTTAGTCCTCCTTCAGAAAAATGGAAAGATTGGTTAGAAAACACTAACCCAGACAATACTCAGGATGACGGATTGGCAACTTGGATAGGGAGTTCAGAACTATTTAATGTTCCACAAGAGTGTTTTCTTGAAGATCCCTACTCAGGCATGCCAATTCAGCCACTCAATGAAGAACTGACTAACAAGAAGAGTCATGTTGAGGAGCTGATACCCACAATGCAAGAGGATCAACCTAATGTCACCCCAGATTCTTCTACAACTGTTAATTCAAAGGCAGACGTTGACAACTCGTTGATAATGTTTCAGGAGATGTTTATGGATTTATTCAAATGGAAAGAAAAGATGGAGCAGCAGCTGTTGGATGTATCAAACACTGTATATGGCATGCTAGCAATGAAGTAG

Protein sequence

>MsG0380016905.01.T01

MDRWGVHRQQAFIGWRASSFPSVTRKEEDSDNDREEVNVKNEPIYFPDSKKRKRLSLSQLREVKVESCEKLREVKEEPYGQLIEVKEEYAGNQSSSKNKRKKHDSKDRWSSERYKSAEQSMWEVLKAEGATFEHPITRPVLRSAARKYIGDTGLLDHLLKHIDRKVAPGGTDRFRRWFNPDGIMEYWLERADLDDVREEAGVDDPYWIPPSTVRAIRAPCQDADSSAELKLLKIEMAQMKNRDMQELIAQKEKKTESNMMEKTCKELMKWKAKTDNRLTEIMDSLKNLQGKYGEFAIWKTEVEQHLMDITNKLNALQAPRECTTFSPPSEKWKDWLENTNPDNTQDDGLATWIGSSELFNVPQECFLEDPYSGMPIQPLNEELTNKKSHVEELIPTMQEDQPNVTPDSSTTVNSKADVDNSLIMFQEMFMDLFKWKEKMEQQLLDVSNTVYGMLAMK*