AlfalfaGEDB | MsG0680034330.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034330.01

KEGG: -
GO: GO:0005506 GO:0016705 GO:0020037 GO:0055114
PFAM: PF00067 PF14204

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034330.01.T01	XP_013453030.1	72.319	401	111	0	216	616	106	506	0	620

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034330.01.T01	H2DH18	52.13	399	187	2	219	616	105	500	1.91E-154	456

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034330.01.T01	A0A072UD95	72.319	401	111	0	216	616	106	506	0.0	620

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003484.01	MsG0680034330.01	0.809323	2.002569e-50	1.172189e-47
MsG0280009526.01	MsG0680034330.01	0.805202	1.495973e-49	7.866696e-47
MsG0280010240.01	MsG0680034330.01	0.803274	3.768744e-49	1.885917e-46
MsG0280011269.01	MsG0680034330.01	0.802634	5.110805e-49	2.516071e-46
MsG0380014639.01	MsG0680034330.01	-0.800641	1.310440e-48	6.133278e-46
MsG0380014642.01	MsG0680034330.01	-0.807931	3.972323e-50	2.241020e-47
MsG0380017030.01	MsG0680034330.01	0.808746	2.661794e-50	1.534208e-47
MsG0380017901.01	MsG0680034330.01	0.816891	4.376847e-52	3.140026e-49
MsG0380018004.01	MsG0680034330.01	0.812310	4.520953e-51	2.864660e-48
MsG0480020904.01	MsG0680034330.01	0.801979	6.973740e-49	3.376180e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034330.01.T01	MTR_6g084770	72.319	401	111	0	216	616	106	506	0.0	620
MsG0680034330.01.T01	MTR_5g070690	53.731	402	183	2	216	616	104	503	1.65e-153	452
MsG0680034330.01.T01	MTR_5g070800	53.731	402	183	2	216	616	104	503	1.65e-153	452
MsG0680034330.01.T01	MTR_5g070700	55.025	398	176	2	220	616	110	505	1.71e-152	449
MsG0680034330.01.T01	MTR_5g070710	53.769	398	179	2	220	616	109	502	4.78e-152	448
MsG0680034330.01.T01	MTR_5g070920	53.015	398	183	2	220	616	110	504	2.46e-148	439
MsG0680034330.01.T01	MTR_5g070850	51.005	398	192	2	220	616	110	505	1.75e-147	436
MsG0680034330.01.T01	MTR_5g070830	55.270	389	171	2	229	616	229	615	3.16e-147	440
MsG0680034330.01.T01	MTR_6g084900	63.197	269	94	2	349	615	2	267	1.50e-123	366
MsG0680034330.01.T01	MTR_2g065360	44.612	399	204	6	225	616	85	473	3.52e-121	367

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034330.01.T01	AT4G36220	39.120	409	228	9	222	616	115	516	3.72e-90	289
MsG0680034330.01.T01	AT5G07990	37.010	408	242	5	217	616	103	503	7.44e-86	277
MsG0680034330.01.T01	AT3G48310	33.590	390	246	4	223	611	108	485	1.63e-83	270
MsG0680034330.01.T01	AT3G48280	34.091	396	249	5	219	613	102	486	2.30e-83	270
MsG0680034330.01.T01	AT5G04330	36.977	430	245	11	203	617	88	506	1.13e-81	266
MsG0680034330.01.T01	AT5G44620	36.070	402	236	8	224	616	123	512	4.37e-80	262
MsG0680034330.01.T01	AT1G13080	33.494	415	258	7	211	615	95	501	2.48e-79	260
MsG0680034330.01.T01	AT3G26300	33.094	417	252	8	209	613	94	495	2.62e-79	260
MsG0680034330.01.T01	AT4G31500	34.080	402	243	6	223	613	106	496	4.41e-79	259
MsG0680034330.01.T01	AT3G48270	33.846	390	245	5	225	613	109	486	7.96e-79	258

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Find 154 sgRNAs with CRISPR-Local

Find 558 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGACAACCATGTTT+TGG	0.293038	6:+85804127	MsG0680034330.01.T01:CDS
AAAATGTGGTTGGAATGGAT+AGG	0.674646	6:+85808189	MsG0680034330.01.T01:CDS
AAACGTCCAACGCTCGATGA+GGG	0.513118	6:+85804066	MsG0680034330.01.T01:CDS
AAATTTGCCTTATTTGACCA+TGG	0.594164	6:+85808235	MsG0680034330.01.T01:CDS
AACATACCTGAAGATCAAAT+GGG	0.501775	6:-85807253	None:intergenic
AACCTCAGAGGTTGAAGGTT+CGG	0.447345	6:+85803944	MsG0680034330.01.T01:CDS
AACGTCCAACGCTCGATGAG+GGG	0.568059	6:+85804067	MsG0680034330.01.T01:CDS
AACTCGTGCATTGTTTCAAT+TGG	0.311510	6:+85808564	MsG0680034330.01.T01:CDS
AAGAAAGGAATCGAGGCAGA+TGG	0.602362	6:+85805527	MsG0680034330.01.T01:CDS
AAGATCAAAGAAAACAATGA+AGG	0.547334	6:+85807881	MsG0680034330.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATACCCTAGAAAATCA+AGG	+	Chr6:85802114-85802133	MsG0680034330.01.T01:intron	30.0%
AAAGAGGTTGAATTGTGAAA+AGG	+	Chr6:85805940-85805959	MsG0680034330.01.T01:intron	30.0%
AACATACCTGAAGATCAAAT+GGG	-	Chr6:85807256-85807275	None:intergenic	30.0%
ACAAGTTAAGGAGCTTAAAA+TGG	+	Chr6:85802551-85802570	MsG0680034330.01.T01:intron	30.0%
ACTAGCAAAAACACTATCAT+GGG	-	Chr6:85806863-85806882	None:intergenic	30.0%
AGAAATAGCTAAATTGGGAA+TGG	+	Chr6:85800754-85800773	MsG0680034330.01.T01:intron	30.0%
AGTACTAGATAAATGAGTTG+TGG	-	Chr6:85807820-85807839	None:intergenic	30.0%
AGTATACGCTCTATATATCA+AGG	-	Chr6:85801403-85801422	None:intergenic	30.0%
AGTATTATGGATAGACAAAG+TGG	+	Chr6:85802391-85802410	MsG0680034330.01.T01:intron	30.0%
ATAATGTTAACTTATGCCCT+TGG	-	Chr6:85802685-85802704	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	85800452	85808700	85800452	ID=MsG0680034330.01;Name=MsG0680034330.01
Chr6	mRNA	85800452	85808700	85800452	ID=MsG0680034330.01.T01;Parent=MsG0680034330.01;Name=MsG0680034330.01.T01;_AED=0.53;_eAED=0.53;_QI=0\|0\|0\|0.6\|1\|1\|5\|0\|618
Chr6	exon	85800452	85800597	85800452	ID=MsG0680034330.01.T01:exon:12968;Parent=MsG0680034330.01.T01
Chr6	exon	85803891	85804182	85803891	ID=MsG0680034330.01.T01:exon:12969;Parent=MsG0680034330.01.T01
Chr6	exon	85805413	85805616	85805413	ID=MsG0680034330.01.T01:exon:12970;Parent=MsG0680034330.01.T01
Chr6	exon	85806885	85807268	85806885	ID=MsG0680034330.01.T01:exon:12971;Parent=MsG0680034330.01.T01
Chr6	exon	85807870	85808700	85807870	ID=MsG0680034330.01.T01:exon:12972;Parent=MsG0680034330.01.T01
Chr6	CDS	85800452	85800597	85800452	ID=MsG0680034330.01.T01:cds;Parent=MsG0680034330.01.T01
Chr6	CDS	85803891	85804182	85803891	ID=MsG0680034330.01.T01:cds;Parent=MsG0680034330.01.T01
Chr6	CDS	85805413	85805616	85805413	ID=MsG0680034330.01.T01:cds;Parent=MsG0680034330.01.T01
Chr6	CDS	85806885	85807268	85806885	ID=MsG0680034330.01.T01:cds;Parent=MsG0680034330.01.T01
Chr6	CDS	85807870	85808700	85807870	ID=MsG0680034330.01.T01:cds;Parent=MsG0680034330.01.T01

Gene Sequence

>MsG0680034330.01.T01

ATGGCTGAACTGGAGGTTTACTCGCCTCCTAGCTCGCCACTGCGAGTTGAAGCTCGCCACTGCGAGTTGAAGCTCGCCACTGCGAGTGGAACAGTGCCCAGTGCATTGTTTTACTCGTCTCGCCTCAGTCGTCGTATTCCGGTCCAATTTGAAACAATGGCCGGGTGGATCGACGTTCATGCAACATTCAACGGCGGAGAACCTCAGAGGTTGAAGGTTCGGTGCCTTGATGTAACGTTAAGAGATCTCAAGGATCAACTGAATGAATTCAACCAAGGAGTCAACCCCAGAGACACAAGGAGGGTGGAACACGTCCGGTATAAACGTCCAACGCTCGATGAGGGGAGGGTATCATTCACTTGGGTGGAGTTAAAGAAGGACGAAAACGTGACAACCATGTTTTGGGAGCACACCAAGTTCCAGTGGATCGATATGCAGGTGGAGTCATCTTCGTCGTACATTTATTCCTTAATAGGTGGAGTCATCTTCGTCGTACATTTGTTGACTGAGGATGAGCCTGAGAAATTCCAGACTCACTTTAGTGAGTACATTAAGAAAGGAATCGAGGCAGATGGCCTTGAGAAGCTTTACAAGAAGATTCATGCTGCAATTCGTGTTGTTCCTCACATTTGCACTCTTGGGGCCAAAAATTTTGTTTCAGATTATGTCACATATGGTAGCAAGGGCCTAACTTTCACCGAGTATGGTGACAATTGGCGCAATATGAGGAAATTGTGTACCATGCAATTATTGCATGCTTCAAAAGTTGAGATGTTTGCTCCTTTGAGAAAGGAAGAGTTGGGGTTTTTGGTTAATTCACTAAGGAAATCATCTACATTACATGAGGTTGTTGATGTCCACAAGGTTGTGGTTGATCTTATAGAGAATATTGGTCATAAAATGATAATGGGCCGGAGCAAGGATGATAGATTCAACATAAATGGGATTATTCACGAAGCAATGAATTTGATTGAAGTTTTTAATCTAGCTGACTTCGTGCCTTGGCTAGCCCCATTTGATCTTCAGGGAATAAAACGAAGATCAAAGAAAACAATGAAGGAGTTTGACGAACTGTTGGAGCACATAATCAAAGAGCATGAGAATCCACCGATTGGAGAACAAAGAGACCATCACGGAAAGAGCTTTTTGGACATATTGTTATCACTCATGAACCAACAAATGGAATCCCAAGAAGAAAATTATGTCATTGATAGAACAACCATCAAGGCTATTATAATAGACATGATTTTAGCAGCAACAGAATCATCTATAGCTGTAATTGAGTGGGCACTTTCAGAACTCATAAAGCATCCTAAGACAATGAAGAGACTTCAAGATGAGCTCGAAAATGTGGTTGGAATGGATAGGCAAGTTGAAGAGACCGACTTGGAAAATTTGCCTTATTTGACCATGGTTGTGAAAGAGACCTTAAGGTTGTACCCTGTTGGACCTTTGTTAGCACCTCATGAGTGTCTTCAAGATGTTGTTGTCGATGGTTTTTATATAAAGAAAAAGTCAATAGTTTTAATAAATGCATGGACAATAGGGAGAGATACTAAGGTTTGGTCTGATAATGCTGAGATGTTTTGTCCAGAGAGATTTGAAGATAGTAATATAGACCTTCGTGGACATGATTTTCAACTTTTACCATTTGGTTCAGGTCGAAGAGGTTGTCCTGGAATGCGGATGGGTTTAACTACTGTGAAGTTTGTTCTAGCACAACTCGTGCATTGTTTCAATTGGGAGCTTCCATATGGTATGTCCCTTGATGAGTTAGACATGTCTGAAAAATTTGAATTTGCCATGCCAAAAAGTCAGCCCTTGCTATCTGTGCCAACCTACCGTCTCTTTACGTAG

Protein sequence

>MsG0680034330.01.T01

MAELEVYSPPSSPLRVEARHCELKLATASGTVPSALFYSSRLSRRIPVQFETMAGWIDVHATFNGGEPQRLKVRCLDVTLRDLKDQLNEFNQGVNPRDTRRVEHVRYKRPTLDEGRVSFTWVELKKDENVTTMFWEHTKFQWIDMQVESSSSYIYSLIGGVIFVVHLLTEDEPEKFQTHFSEYIKKGIEADGLEKLYKKIHAAIRVVPHICTLGAKNFVSDYVTYGSKGLTFTEYGDNWRNMRKLCTMQLLHASKVEMFAPLRKEELGFLVNSLRKSSTLHEVVDVHKVVVDLIENIGHKMIMGRSKDDRFNINGIIHEAMNLIEVFNLADFVPWLAPFDLQGIKRRSKKTMKEFDELLEHIIKEHENPPIGEQRDHHGKSFLDILLSLMNQQMESQEENYVIDRTTIKAIIIDMILAATESSIAVIEWALSELIKHPKTMKRLQDELENVVGMDRQVEETDLENLPYLTMVVKETLRLYPVGPLLAPHECLQDVVVDGFYIKKKSIVLINAWTIGRDTKVWSDNAEMFCPERFEDSNIDLRGHDFQLLPFGSGRRGCPGMRMGLTTVKFVLAQLVHCFNWELPYGMSLDELDMSEKFEFAMPKSQPLLSVPTYRLFT*