AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010240.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010240.01.T01 MTR_2g079630 96.915 389 12 0 1 389 1 389 0.0 767
MsG0280010240.01.T01 MTR_2g079650 81.795 390 65 3 1 389 1 385 0.0 608
MsG0280010240.01.T01 MTR_2g013110 45.636 401 182 8 7 387 9 393 6.20e-112 333
MsG0280010240.01.T01 MTR_7g079680 28.271 428 226 14 1 379 1 396 7.18e-31 122
MsG0280010240.01.T01 MTR_7g079680 31.301 246 118 10 155 379 61 276 1.19e-17 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010240.01.T01 AT4G27460 51.378 399 171 11 1 387 1 388 1.44e-113 337
MsG0280010240.01.T01 AT5G53750 50.120 415 169 12 1 387 1 405 1.11e-109 328
MsG0280010240.01.T01 AT1G65320 26.790 433 229 14 1 379 1 399 1.35e-28 116

Find 111 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCATTTCTGTCATGAATA+AGG 0.230254 2:-66552655 MsG0280010240.01.T01:three_prime_UTR
AAGGTTGAAGGAAAAGAATT+TGG 0.316598 2:-66553176 MsG0280010240.01.T01:CDS
CGATGACCTTGCATACTTTC+CGG 0.330667 2:+66553051 None:intergenic
GTGTCCTTCCAAAGCTCTTA+AGG 0.331448 2:-66554829 MsG0280010240.01.T01:CDS
GCGAAAGTTTCGTCAGTGTT+TGG 0.340276 2:-66554947 MsG0280010240.01.T01:CDS
CACAGCAATCAAAGAGCTCT+TGG 0.367612 2:+66552979 None:intergenic
AATTGAAGCCTTAAGAGCTT+TGG 0.367682 2:+66554821 None:intergenic
AACTGTGACCACTCTGAATT+CGG 0.379187 2:-66554924 MsG0280010240.01.T01:CDS
GCCCTCCAGAGGATCTAGTT+AGG 0.395318 2:-66553210 MsG0280010240.01.T01:CDS
CTCTACATTCCTCACATACT+TGG 0.414784 2:+66553018 None:intergenic
GAGGATGATTGGAGCTTAGT+TGG 0.417326 2:-66552911 MsG0280010240.01.T01:CDS
TGTGGGTTATTGAGGATGAT+TGG 0.421312 2:-66552922 MsG0280010240.01.T01:CDS
CATGACAGAAATGCATCAAA+GGG 0.427352 2:+66552662 None:intergenic
GCCATCACAACTTTGTCTGC+AGG 0.430978 2:-66553262 MsG0280010240.01.T01:CDS
CTTCAACAGCAGAAGACGCC+TGG 0.435308 2:+66553401 None:intergenic
AGGTTCTTGCTTGGTTCCAT+TGG 0.451234 2:-66553505 MsG0280010240.01.T01:CDS
ATGTGTTGGGAAAATTTGTA+TGG 0.452481 2:-66554892 MsG0280010240.01.T01:CDS
TAGTGAAGCATGAAACTTGT+TGG 0.454029 2:-66552787 MsG0280010240.01.T01:three_prime_UTR
TAATAGAGTGAATTACTTGT+GGG 0.472091 2:-66552939 MsG0280010240.01.T01:CDS
TCGGTCAATGTCAATGTGTT+GGG 0.473950 2:-66554905 MsG0280010240.01.T01:CDS
CTCCATTGATTACTCTTCCC+AGG 0.476252 2:-66553419 MsG0280010240.01.T01:CDS
GGTTGTAAAGGCAAGGTTGA+AGG 0.477069 2:-66553188 MsG0280010240.01.T01:CDS
ATCAACCTTATTCAAAACAT+TGG 0.479230 2:+66554797 None:intergenic
GCCATTGATCTCATACTTGA+GGG 0.480304 2:-66553664 MsG0280010240.01.T01:CDS
GAATTACTTGTGGGTTATTG+AGG 0.486011 2:-66552930 MsG0280010240.01.T01:CDS
AACTTTCGCCGCCGGAGCTA+CGG 0.487382 2:+66554961 None:intergenic
GATGTGATCAGGTTCTTGCT+TGG 0.488754 2:-66553514 MsG0280010240.01.T01:CDS
ATTGAAGTCCTCCGTAGCTC+CGG 0.495539 2:-66554972 MsG0280010240.01.T01:CDS
CCCTCCAGAGGATCTAGTTA+GGG 0.498391 2:-66553209 MsG0280010240.01.T01:CDS
GCGAGGAGTTTGACACGGTC+CGG 0.500066 2:-66553070 MsG0280010240.01.T01:CDS
GCAAAGATTGAACGCGGCGG+CGG 0.501363 2:+66555091 None:intergenic
AACAGAAAGACCACATTCAC+AGG 0.502709 2:+66552764 None:intergenic
AGACGATCGATGGATTGTGC+AGG 0.510025 2:+66553466 None:intergenic
GACCGTGTCAAACTCCTCGC+TGG 0.518598 2:+66553073 None:intergenic
GTTGCAATTGTCGACGGTGA+TGG 0.521762 2:-66553346 MsG0280010240.01.T01:CDS
AGGGACAAGAACTATGATAC+AGG 0.522380 2:+66552614 None:intergenic
GGATCTAGTTAGGGTTGTAA+AGG 0.524022 2:-66553200 MsG0280010240.01.T01:CDS
CCATCACAACTTTGTCTGCA+GGG 0.524200 2:-66553261 MsG0280010240.01.T01:CDS
ACAGCAATCAAAGAGCTCTT+GGG 0.525945 2:+66552980 None:intergenic
AATAAATGGTACCTAGATGA+AGG 0.528220 2:+66554753 None:intergenic
TTGTGTGAGGGACTTTGAGA+TGG 0.531894 2:+66553378 None:intergenic
CCCCTCAAGTATGAGATCAA+TGG 0.534194 2:+66553663 None:intergenic
CTAATAGAGTGAATTACTTG+TGG 0.535417 2:-66552940 MsG0280010240.01.T01:CDS
ACAACCCTAACTAGATCCTC+TGG 0.535562 2:+66553205 None:intergenic
TCATGACAGAAATGCATCAA+AGG 0.537397 2:+66552661 None:intergenic
TTCATCTAGAACCTTCATCT+AGG 0.539213 2:-66554764 MsG0280010240.01.T01:intron
TGCCATTGATCTCATACTTG+AGG 0.539564 2:-66553665 MsG0280010240.01.T01:CDS
TTGCAATTGTCGACGGTGAT+GGG 0.542443 2:-66553345 MsG0280010240.01.T01:CDS
GACGGTGATGGGACATTCAT+CGG 0.542508 2:-66553334 MsG0280010240.01.T01:CDS
TTCGGTCAATGTCAATGTGT+TGG 0.546600 2:-66554906 MsG0280010240.01.T01:CDS
CCCTGCAGACAAAGTTGTGA+TGG 0.549793 2:+66553261 None:intergenic
CATCACAACTTTGTCTGCAG+GGG 0.550293 2:-66553260 MsG0280010240.01.T01:CDS
TAACACAAGAGGATGTGATC+AGG 0.550433 2:-66553525 MsG0280010240.01.T01:CDS
GATAATATTGAGACGATCGA+TGG 0.553025 2:+66553456 None:intergenic
TGCAGTGTGGCTGATGAGGC+CGG 0.553949 2:-66552732 MsG0280010240.01.T01:three_prime_UTR
CGCCGCGTTCAATCTTTGCA+TGG 0.555324 2:-66555087 MsG0280010240.01.T01:exon
GAGTGCACTGAAGCGGCCAA+TGG 0.559548 2:+66553489 None:intergenic
ACAACGGTGTTGAGTTCTGT+TGG 0.560590 2:-66553549 MsG0280010240.01.T01:CDS
CGCCTGGGAAGAGTAATCAA+TGG 0.562410 2:+66553417 None:intergenic
ATCACAACATGCAAGTGTGA+AGG 0.567692 2:+66553300 None:intergenic
AACTTGTTGGCCTGTGAATG+TGG 0.567954 2:-66552774 MsG0280010240.01.T01:three_prime_UTR
TAGTTAGGGTTGTAAAGGCA+AGG 0.569328 2:-66553195 MsG0280010240.01.T01:CDS
GAGTTATCTGATCTCTGTCT+CGG 0.571057 2:-66555044 MsG0280010240.01.T01:CDS
CAACAGAAGTTTGTTGTGTG+AGG 0.577183 2:+66553365 None:intergenic
ATCCTCCTCTTCATCTGATG+AGG 0.578040 2:-66553101 MsG0280010240.01.T01:CDS
TGCAAGGTCATCGAGCTACT+CGG 0.582724 2:-66553041 MsG0280010240.01.T01:CDS
ATCACAACTTTGTCTGCAGG+GGG 0.584206 2:-66553259 MsG0280010240.01.T01:CDS
TTTCGCCGCCGGAGCTACGG+AGG 0.585312 2:+66554964 None:intergenic
TCGTCTCAATATTATCAGCT+CGG 0.585428 2:-66553449 MsG0280010240.01.T01:CDS
GTTCTGTTGGTTAACACAAG+AGG 0.588395 2:-66553536 MsG0280010240.01.T01:CDS
ACTGTCCTCATCAGATGAAG+AGG 0.592088 2:+66553096 None:intergenic
TTCAACAGCAGAAGACGCCT+GGG 0.592455 2:+66553402 None:intergenic
GTGCAGGGAGTGCACTGAAG+CGG 0.593463 2:+66553482 None:intergenic
GACTTCAATTGCCTCAGCGA+CGG 0.595693 2:+66554986 None:intergenic
GTCCTCATCAGATGAAGAGG+AGG 0.596841 2:+66553099 None:intergenic
TCACAACATGCAAGTGTGAA+GGG 0.596883 2:+66553301 None:intergenic
GACGATCGATGGATTGTGCA+GGG 0.604203 2:+66553467 None:intergenic
GAAGTCCTCCGTAGCTCCGG+CGG 0.605794 2:-66554969 MsG0280010240.01.T01:CDS
TGCAGACAAAGTTGTGATGG+CGG 0.609998 2:+66553264 None:intergenic
AACAGAAGTTTGTTGTGTGA+GGG 0.614439 2:+66553366 None:intergenic
CACGGTCCGGAAAGTATGCA+AGG 0.614793 2:-66553057 MsG0280010240.01.T01:CDS
GTTGAAGTCGCTTTCAACGT+CGG 0.615025 2:-66555012 MsG0280010240.01.T01:CDS
AGGGCGACCACAGTCAATGT+AGG 0.615124 2:+66553228 None:intergenic
GTTGAAAGCGACTTCAACGG+CGG 0.616613 2:+66555017 None:intergenic
GAAGCCTTAAGAGCTTTGGA+AGG 0.616878 2:+66554825 None:intergenic
TGACTGTGGTCGCCCTCCAG+AGG 0.619657 2:-66553221 MsG0280010240.01.T01:CDS
ATGTTGTGATGAGACGGTTG+CGG 0.621625 2:-66553287 MsG0280010240.01.T01:CDS
ACTTCTGTTGCAATTGTCGA+CGG 0.622534 2:-66553352 MsG0280010240.01.T01:CDS
ACTGACGAAACTTTCGCCGC+CGG 0.623945 2:+66554953 None:intergenic
AACAGAACTCAACACCGTTG+TGG 0.629524 2:+66553551 None:intergenic
TAACTGCAGTGTGGCTGATG+AGG 0.632164 2:-66552736 MsG0280010240.01.T01:three_prime_UTR
CGGCGGAGAGAATCTCGAAA+CGG 0.635033 2:+66555108 None:intergenic
GACGTTGAAAGCGACTTCAA+CGG 0.641361 2:+66555014 None:intergenic
ACCCTAACTAGATCCTCTGG+AGG 0.646675 2:+66553208 None:intergenic
AGAGGAGGATGACATATCAC+CGG 0.649223 2:+66553114 None:intergenic
GCTACTCGGCCAAGTATGTG+AGG 0.650705 2:-66553027 MsG0280010240.01.T01:CDS
CATTGATCTCATACTTGAGG+GGG 0.653452 2:-66553662 MsG0280010240.01.T01:CDS
CAAGTATGTGAGGAATGTAG+AGG 0.658949 2:-66553017 MsG0280010240.01.T01:CDS
ACTTGCATGTTGTGATGAGA+CGG 0.665678 2:-66553293 MsG0280010240.01.T01:CDS
GACATTGACCGAATTCAGAG+TGG 0.672174 2:+66554916 None:intergenic
AACGTCGGCTACCGTCGCTG+AGG 0.672712 2:-66554997 MsG0280010240.01.T01:CDS
CCATTGATCTCATACTTGAG+GGG 0.673886 2:-66553663 MsG0280010240.01.T01:CDS
CCCTAACTAGATCCTCTGGA+GGG 0.680964 2:+66553209 None:intergenic
TTGATGGCCTACATTGACTG+TGG 0.683351 2:-66553235 MsG0280010240.01.T01:CDS
GTCCAGCGAGGAGTTTGACA+CGG 0.692530 2:-66553075 MsG0280010240.01.T01:CDS
TTCCATGCAAAGATTGAACG+CGG 0.705700 2:+66555085 None:intergenic
CATGCAAAGATTGAACGCGG+CGG 0.705845 2:+66555088 None:intergenic
ATGACAGAAATGCATCAAAG+GGG 0.705982 2:+66552663 None:intergenic
TTAACAATCAACAGCCACAA+CGG 0.709558 2:-66553565 MsG0280010240.01.T01:CDS
TGTTATGAATAACTGCAGTG+TGG 0.714149 2:-66552745 MsG0280010240.01.T01:three_prime_UTR
CTGATGAGGACAGTCCAGCG+AGG 0.749311 2:-66553087 MsG0280010240.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGAATAAACAAATAAA+TGG + Chr2:66552980-66552999 None:intergenic 10.0%
!!! AACTTGAAATTGTATTTTTT+TGG - Chr2:66553855-66553874 MsG0280010240.01.T01:intron 15.0%
!!! ACTTGAAATTGTATTTTTTT+GGG - Chr2:66553856-66553875 MsG0280010240.01.T01:intron 15.0%
!! AAAAAAAGAGGAATATGTAT+CGG - Chr2:66553787-66553806 MsG0280010240.01.T01:intron 20.0%
!! ATGAAAATCCTTAAAAAAAG+AGG - Chr2:66553775-66553794 MsG0280010240.01.T01:intron 20.0%
!! TTGTTTACACTCAAAATTTA+TGG - Chr2:66553431-66553450 MsG0280010240.01.T01:CDS 20.0%
!!! AATAATGTTTGTCATTGATT+TGG - Chr2:66553230-66553249 MsG0280010240.01.T01:CDS 20.0%
!!! AATGTAAAATGATTTGTGTT+TGG + Chr2:66553477-66553496 None:intergenic 20.0%
!!! AATTTCCAATGTTTTGAATA+AGG - Chr2:66552914-66552933 MsG0280010240.01.T01:CDS 20.0%
!!! ATTTTCAAAGAAAACATTTG+AGG + Chr2:66555125-66555144 None:intergenic 20.0%
!!! CTTGAAATTGTATTTTTTTG+GGG - Chr2:66553857-66553876 MsG0280010240.01.T01:intron 20.0%
!!! TAAGACATTCTTTTTTTGTT+TGG + Chr2:66553169-66553188 None:intergenic 20.0%
!!! TACATATTCCTCTTTTTTTA+AGG + Chr2:66553786-66553805 None:intergenic 20.0%
!!! TACTTTTTCTAATATCTTGA+AGG - Chr2:66554834-66554853 MsG0280010240.01.T01:CDS 20.0%
!!! TATAATGTGTTTGATTTACA+TGG - Chr2:66553651-66553670 MsG0280010240.01.T01:CDS 20.0%
!!! TTGAAATTGTATTTTTTTGG+GGG - Chr2:66553858-66553877 MsG0280010240.01.T01:intron 20.0%
!!! TTTTCAAAGAAAACATTTGA+GGG + Chr2:66555124-66555143 None:intergenic 20.0%
! AAAACTCATACTCAAAATCA+AGG + Chr2:66553695-66553714 None:intergenic 25.0%
! AAACTCATACTCAAAATCAA+GGG + Chr2:66553694-66553713 None:intergenic 25.0%
! ACAATGCATAAAAATATGCA+AGG - Chr2:66553118-66553137 MsG0280010240.01.T01:CDS 25.0%
! ATAAAGCAAAAACAAAGATC+CGG + Chr2:66555006-66555025 None:intergenic 25.0%
! ATACACCTCTATAATCAATT+TGG + Chr2:66553266-66553285 None:intergenic 25.0%
! ATCAACCTTATTCAAAACAT+TGG + Chr2:66552922-66552941 None:intergenic 25.0%
! CATTTAGAAACATATGATTC+AGG + Chr2:66553834-66553853 None:intergenic 25.0%
! TAACATCAAAATAACAAGGA+GGG + Chr2:66554019-66554038 None:intergenic 25.0%
! TAATAGAGTGAATTACTTGT+GGG - Chr2:66554777-66554796 MsG0280010240.01.T01:CDS 25.0%
! TCAACAATTAAGTGTATGTT+TGG + Chr2:66553535-66553554 None:intergenic 25.0%
!! AAAGATTTTGTTCTTTGCAA+AGG + Chr2:66552866-66552885 None:intergenic 25.0%
!! AATTGATTCTATTGAGTGTT+TGG - Chr2:66553408-66553427 MsG0280010240.01.T01:CDS 25.0%
!! TGAATTTGAAATTTGCTTTC+AGG - Chr2:66553597-66553616 MsG0280010240.01.T01:CDS 25.0%
!!! AATGTTTTGAATAAGGTTGA+TGG - Chr2:66552921-66552940 MsG0280010240.01.T01:CDS 25.0%
!!! ATTCTTTTTTTGTTTGGTAG+TGG + Chr2:66553163-66553182 None:intergenic 25.0%
!!! ATTTTGATGTTACAGCTTAT+TGG - Chr2:66554027-66554046 MsG0280010240.01.T01:intron 25.0%
!!! GATATTTGTTGTAGTTTTGA+GGG - Chr2:66553625-66553644 MsG0280010240.01.T01:CDS 25.0%
!!! TGAAATTGTATTTTTTTGGG+GGG - Chr2:66553859-66553878 MsG0280010240.01.T01:intron 25.0%
!!! TGATATTTGTTGTAGTTTTG+AGG - Chr2:66553624-66553643 MsG0280010240.01.T01:CDS 25.0%
!!! TGTCATTGATTTGGATTAAA+CGG - Chr2:66553239-66553258 MsG0280010240.01.T01:CDS 25.0%
!!! TTTGACTTTGTATCTGATTT+TGG - Chr2:66553352-66553371 MsG0280010240.01.T01:CDS 25.0%
AAGGTTGAAGGAAAAGAATT+TGG - Chr2:66554540-66554559 MsG0280010240.01.T01:intron 30.0%
AATAAATGGTACCTAGATGA+AGG + Chr2:66552966-66552985 None:intergenic 30.0%
ATAAAAATATGCAAGGTTCG+GGG - Chr2:66553125-66553144 MsG0280010240.01.T01:CDS 30.0%
ATGCATTTCTGTCATGAATA+AGG - Chr2:66555061-66555080 MsG0280010240.01.T01:CDS 30.0%
ATGTGTTGGGAAAATTTGTA+TGG - Chr2:66552824-66552843 MsG0280010240.01.T01:three_prime_UTR 30.0%
CATAAAAATATGCAAGGTTC+GGG - Chr2:66553124-66553143 MsG0280010240.01.T01:CDS 30.0%
CTAATAGAGTGAATTACTTG+TGG - Chr2:66554776-66554795 MsG0280010240.01.T01:CDS 30.0%
GCATAAAAATATGCAAGGTT+CGG - Chr2:66553123-66553142 MsG0280010240.01.T01:CDS 30.0%
GCTGTAACATCAAAATAACA+AGG + Chr2:66554023-66554042 None:intergenic 30.0%
GTAACATCAAAATAACAAGG+AGG + Chr2:66554020-66554039 None:intergenic 30.0%
! ATTTTGCAGACAAAAAAAGG+TGG - Chr2:66554097-66554116 MsG0280010240.01.T01:intron 30.0%
! CCAATTTTGCAGACAAAAAA+AGG - Chr2:66554094-66554113 MsG0280010240.01.T01:intron 30.0%
!!! CCTTTTTTTGTCTGCAAAAT+TGG + Chr2:66554097-66554116 None:intergenic 30.0%
AATTGAAGCCTTAAGAGCTT+TGG + Chr2:66552898-66552917 None:intergenic 35.0%
ACGGTCCAAATTGATTATAG+AGG - Chr2:66553258-66553277 MsG0280010240.01.T01:CDS 35.0%
ATGACAGAAATGCATCAAAG+GGG + Chr2:66555056-66555075 None:intergenic 35.0%
CATGACAGAAATGCATCAAA+GGG + Chr2:66555057-66555076 None:intergenic 35.0%
GAATTGATTGACATGGAAAG+GGG - Chr2:66553898-66553917 MsG0280010240.01.T01:intron 35.0%
GATAATATTGAGACGATCGA+TGG + Chr2:66554263-66554282 None:intergenic 35.0%
GGAATTGATTGACATGGAAA+GGG - Chr2:66553897-66553916 MsG0280010240.01.T01:intron 35.0%
TAGTGAAGCATGAAACTTGT+TGG - Chr2:66554929-66554948 MsG0280010240.01.T01:CDS 35.0%
TCACAGCACGTAAATAATCT+TGG - Chr2:66553034-66553053 MsG0280010240.01.T01:CDS 35.0%
TCATGACAGAAATGCATCAA+AGG + Chr2:66555058-66555077 None:intergenic 35.0%
TCGTCTCAATATTATCAGCT+CGG - Chr2:66554267-66554286 MsG0280010240.01.T01:intron 35.0%
TGGAATTGATTGACATGGAA+AGG - Chr2:66553896-66553915 MsG0280010240.01.T01:intron 35.0%
TGTTATGAATAACTGCAGTG+TGG - Chr2:66554971-66554990 MsG0280010240.01.T01:CDS 35.0%
TTAACAATCAACAGCCACAA+CGG - Chr2:66554151-66554170 MsG0280010240.01.T01:intron 35.0%
! GAATTACTTGTGGGTTATTG+AGG - Chr2:66554786-66554805 MsG0280010240.01.T01:CDS 35.0%
! TTCATCTAGAACCTTCATCT+AGG - Chr2:66552952-66552971 MsG0280010240.01.T01:CDS 35.0%
!! AACAGAAGTTTGTTGTGTGA+GGG + Chr2:66554353-66554372 None:intergenic 35.0%
!! TAAGTGTATGTTTGGTTCTG+AGG + Chr2:66553527-66553546 None:intergenic 35.0%
!!! TTTTTTTGGGGGGTAAGTTT+TGG - Chr2:66553869-66553888 MsG0280010240.01.T01:intron 35.0%
!!! TTTTTTTGTTTGGTAGTGGC+CGG + Chr2:66553159-66553178 None:intergenic 35.0%
AACAGAAAGACCACATTCAC+AGG + Chr2:66554955-66554974 None:intergenic 40.0%
AACTGTGACCACTCTGAATT+CGG - Chr2:66552792-66552811 MsG0280010240.01.T01:three_prime_UTR 40.0%
ACAGCAATCAAAGAGCTCTT+GGG + Chr2:66554739-66554758 None:intergenic 40.0%
ACTTCTGTTGCAATTGTCGA+CGG - Chr2:66554364-66554383 MsG0280010240.01.T01:intron 40.0%
ACTTGCATGTTGTGATGAGA+CGG - Chr2:66554423-66554442 MsG0280010240.01.T01:intron 40.0%
AGGGACAAGAACTATGATAC+AGG + Chr2:66555105-66555124 None:intergenic 40.0%
ATCACAACATGCAAGTGTGA+AGG + Chr2:66554419-66554438 None:intergenic 40.0%
CAAAAAAAGGTGGCCTTTCA+AGG - Chr2:66554107-66554126 MsG0280010240.01.T01:intron 40.0%
CAAGTATGTGAGGAATGTAG+AGG - Chr2:66554699-66554718 MsG0280010240.01.T01:intron 40.0%
CATTGATCTCATACTTGAGG+GGG - Chr2:66554054-66554073 MsG0280010240.01.T01:intron 40.0%
CCATTGATCTCATACTTGAG+GGG - Chr2:66554053-66554072 MsG0280010240.01.T01:intron 40.0%
CTCTACATTCCTCACATACT+TGG + Chr2:66554701-66554720 None:intergenic 40.0%
GAGTGTGGAATTGATTGACA+TGG - Chr2:66553891-66553910 MsG0280010240.01.T01:intron 40.0%
GAGTTATCTGATCTCTGTCT+CGG - Chr2:66552672-66552691 MsG0280010240.01.T01:three_prime_UTR 40.0%
GCCATTGATCTCATACTTGA+GGG - Chr2:66554052-66554071 MsG0280010240.01.T01:intron 40.0%
GGATCTAGTTAGGGTTGTAA+AGG - Chr2:66554516-66554535 MsG0280010240.01.T01:intron 40.0%
TAACACAAGAGGATGTGATC+AGG - Chr2:66554191-66554210 MsG0280010240.01.T01:intron 40.0%
TAGTTAGGGTTGTAAAGGCA+AGG - Chr2:66554521-66554540 MsG0280010240.01.T01:intron 40.0%
TCACAACATGCAAGTGTGAA+GGG + Chr2:66554418-66554437 None:intergenic 40.0%
TCGGTCAATGTCAATGTGTT+GGG - Chr2:66552811-66552830 MsG0280010240.01.T01:three_prime_UTR 40.0%
TGCCATTGATCTCATACTTG+AGG - Chr2:66554051-66554070 MsG0280010240.01.T01:intron 40.0%
TTCCATGCAAAGATTGAACG+CGG + Chr2:66552634-66552653 None:intergenic 40.0%
TTCGGTCAATGTCAATGTGT+TGG - Chr2:66552810-66552829 MsG0280010240.01.T01:three_prime_UTR 40.0%
! GTTCTGTTGGTTAACACAAG+AGG - Chr2:66554180-66554199 MsG0280010240.01.T01:intron 40.0%
! TGTGGGTTATTGAGGATGAT+TGG - Chr2:66554794-66554813 MsG0280010240.01.T01:CDS 40.0%
!! CAACAGAAGTTTGTTGTGTG+AGG + Chr2:66554354-66554373 None:intergenic 40.0%
!! TCTGATTTTGGCATGTTGTC+AGG - Chr2:66553364-66553383 MsG0280010240.01.T01:CDS 40.0%
!!! ACGCTTTTGACTTCTTTGAC+CGG - Chr2:66554583-66554602 MsG0280010240.01.T01:intron 40.0%
!!! TTTTTTGTTTGGTAGTGGCC+GGG + Chr2:66553158-66553177 None:intergenic 40.0%
AACAGAACTCAACACCGTTG+TGG + Chr2:66554168-66554187 None:intergenic 45.0%
ACAACCCTAACTAGATCCTC+TGG + Chr2:66554514-66554533 None:intergenic 45.0%
ACTGTCCTCATCAGATGAAG+AGG + Chr2:66554623-66554642 None:intergenic 45.0%
AGAGGAGGATGACATATCAC+CGG + Chr2:66554605-66554624 None:intergenic 45.0%
AGGTTCTTGCTTGGTTCCAT+TGG - Chr2:66554211-66554230 MsG0280010240.01.T01:intron 45.0%
ATCACAACTTTGTCTGCAGG+GGG - Chr2:66554457-66554476 MsG0280010240.01.T01:intron 45.0%
ATCCTCCTCTTCATCTGATG+AGG - Chr2:66554615-66554634 MsG0280010240.01.T01:intron 45.0%
ATGTTGTGATGAGACGGTTG+CGG - Chr2:66554429-66554448 MsG0280010240.01.T01:intron 45.0%
CACAGCAATCAAAGAGCTCT+TGG + Chr2:66554740-66554759 None:intergenic 45.0%
CATCACAACTTTGTCTGCAG+GGG - Chr2:66554456-66554475 MsG0280010240.01.T01:intron 45.0%
CCATCACAACTTTGTCTGCA+GGG - Chr2:66554455-66554474 MsG0280010240.01.T01:intron 45.0%
CCCCTCAAGTATGAGATCAA+TGG + Chr2:66554056-66554075 None:intergenic 45.0%
CGATGACCTTGCATACTTTC+CGG + Chr2:66554668-66554687 None:intergenic 45.0%
GACATTGACCGAATTCAGAG+TGG + Chr2:66552803-66552822 None:intergenic 45.0%
GACGTTGAAAGCGACTTCAA+CGG + Chr2:66552705-66552724 None:intergenic 45.0%
GAGGATGATTGGAGCTTAGT+TGG - Chr2:66554805-66554824 MsG0280010240.01.T01:CDS 45.0%
GATGTGATCAGGTTCTTGCT+TGG - Chr2:66554202-66554221 MsG0280010240.01.T01:intron 45.0%
GCGAAAGTTTCGTCAGTGTT+TGG - Chr2:66552769-66552788 MsG0280010240.01.T01:three_prime_UTR 45.0%
GGTTGTAAAGGCAAGGTTGA+AGG - Chr2:66554528-66554547 MsG0280010240.01.T01:intron 45.0%
GTGTCCTTCCAAAGCTCTTA+AGG - Chr2:66552887-66552906 MsG0280010240.01.T01:CDS 45.0%
TGATTGACATGGAAAGGGGT+GGG - Chr2:66553902-66553921 MsG0280010240.01.T01:intron 45.0%
TGCAGACAAAGTTGTGATGG+CGG + Chr2:66554455-66554474 None:intergenic 45.0%
TTGATTGACATGGAAAGGGG+TGG - Chr2:66553901-66553920 MsG0280010240.01.T01:intron 45.0%
TTGCAATTGTCGACGGTGAT+GGG - Chr2:66554371-66554390 MsG0280010240.01.T01:intron 45.0%
! ACAACGGTGTTGAGTTCTGT+TGG - Chr2:66554167-66554186 MsG0280010240.01.T01:intron 45.0%
! CTCCATTGATTACTCTTCCC+AGG - Chr2:66554297-66554316 MsG0280010240.01.T01:intron 45.0%
! GCTGCAGTTTTCTCCTTGAA+AGG + Chr2:66554123-66554142 None:intergenic 45.0%
! GTTGAAGTCGCTTTCAACGT+CGG - Chr2:66552704-66552723 MsG0280010240.01.T01:three_prime_UTR 45.0%
! TTGATGGCCTACATTGACTG+TGG - Chr2:66554481-66554500 MsG0280010240.01.T01:intron 45.0%
! TTGTGTGAGGGACTTTGAGA+TGG + Chr2:66554341-66554360 None:intergenic 45.0%
!! AACTTGTTGGCCTGTGAATG+TGG - Chr2:66554942-66554961 MsG0280010240.01.T01:CDS 45.0%
!! GAAGCCTTAAGAGCTTTGGA+AGG + Chr2:66552894-66552913 None:intergenic 45.0%
!! GATTTTGGCATGTTGTCAGG+TGG - Chr2:66553367-66553386 MsG0280010240.01.T01:CDS 45.0%
!!! TTTTTGTTTGGTAGTGGCCG+GGG + Chr2:66553157-66553176 None:intergenic 45.0%
AAGGTTCGGGGTTTAAACCC+CGG - Chr2:66553137-66553156 MsG0280010240.01.T01:CDS 50.0%
ACCCTAACTAGATCCTCTGG+AGG + Chr2:66554511-66554530 None:intergenic 50.0%
ATTGAAGTCCTCCGTAGCTC+CGG - Chr2:66552744-66552763 MsG0280010240.01.T01:three_prime_UTR 50.0%
CATGCAAAGATTGAACGCGG+CGG + Chr2:66552631-66552650 None:intergenic 50.0%
CCCTAACTAGATCCTCTGGA+GGG + Chr2:66554510-66554529 None:intergenic 50.0%
CCCTCCAGAGGATCTAGTTA+GGG - Chr2:66554507-66554526 MsG0280010240.01.T01:intron 50.0%
CCCTGCAGACAAAGTTGTGA+TGG + Chr2:66554458-66554477 None:intergenic 50.0%
CGCCTGGGAAGAGTAATCAA+TGG + Chr2:66554302-66554321 None:intergenic 50.0%
GACTTCAATTGCCTCAGCGA+CGG + Chr2:66552733-66552752 None:intergenic 50.0%
GCCATCACAACTTTGTCTGC+AGG - Chr2:66554454-66554473 MsG0280010240.01.T01:intron 50.0%
GTCCTCATCAGATGAAGAGG+AGG + Chr2:66554620-66554639 None:intergenic 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - Chr2:66553095-66553114 MsG0280010240.01.T01:CDS 50.0%
GTTGAAAGCGACTTCAACGG+CGG + Chr2:66552702-66552721 None:intergenic 50.0%
GTTGCAATTGTCGACGGTGA+TGG - Chr2:66554370-66554389 MsG0280010240.01.T01:intron 50.0%
TAACTGCAGTGTGGCTGATG+AGG - Chr2:66554980-66554999 MsG0280010240.01.T01:CDS 50.0%
TGCAAGGTCATCGAGCTACT+CGG - Chr2:66554675-66554694 MsG0280010240.01.T01:intron 50.0%
TTCAACAGCAGAAGACGCCT+GGG + Chr2:66554317-66554336 None:intergenic 50.0%
!! AGACGATCGATGGATTGTGC+AGG + Chr2:66554253-66554272 None:intergenic 50.0%
!! GACGATCGATGGATTGTGCA+GGG + Chr2:66554252-66554271 None:intergenic 50.0%
!! GACGGTGATGGGACATTCAT+CGG - Chr2:66554382-66554401 MsG0280010240.01.T01:intron 50.0%
ACTGACGAAACTTTCGCCGC+CGG + Chr2:66552766-66552785 None:intergenic 55.0%
AGGGCGACCACAGTCAATGT+AGG + Chr2:66554491-66554510 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + Chr2:66553094-66553113 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - Chr2:66553091-66553110 MsG0280010240.01.T01:CDS 55.0%
CGCCGCGTTCAATCTTTGCA+TGG - Chr2:66552629-66552648 MsG0280010240.01.T01:three_prime_UTR 55.0%
CGGCGGAGAGAATCTCGAAA+CGG + Chr2:66552611-66552630 None:intergenic 55.0%
CTTCAACAGCAGAAGACGCC+TGG + Chr2:66554318-66554337 None:intergenic 55.0%
GCCCTCCAGAGGATCTAGTT+AGG - Chr2:66554506-66554525 MsG0280010240.01.T01:intron 55.0%
GCTACTCGGCCAAGTATGTG+AGG - Chr2:66554689-66554708 MsG0280010240.01.T01:intron 55.0%
GTCCAGCGAGGAGTTTGACA+CGG - Chr2:66554641-66554660 MsG0280010240.01.T01:intron 55.0%
TTTGTCTGCAGGGGGCTTGA+TGG - Chr2:66554465-66554484 MsG0280010240.01.T01:intron 55.0%
! CACGGTCCGGAAAGTATGCA+AGG - Chr2:66554659-66554678 MsG0280010240.01.T01:intron 55.0%
!!! GGGGGGTAAGTTTTGGAGTG+TGG - Chr2:66553876-66553895 MsG0280010240.01.T01:intron 55.0%
AACTTTCGCCGCCGGAGCTA+CGG + Chr2:66552758-66552777 None:intergenic 60.0%
CTGATGAGGACAGTCCAGCG+AGG - Chr2:66554629-66554648 MsG0280010240.01.T01:intron 60.0%
GACCGTGTCAAACTCCTCGC+TGG + Chr2:66554646-66554665 None:intergenic 60.0%
GAGTGCACTGAAGCGGCCAA+TGG + Chr2:66554230-66554249 None:intergenic 60.0%
GCAAAGATTGAACGCGGCGG+CGG + Chr2:66552628-66552647 None:intergenic 60.0%
GCGAGGAGTTTGACACGGTC+CGG - Chr2:66554646-66554665 MsG0280010240.01.T01:intron 60.0%
TGCAGTGTGGCTGATGAGGC+CGG - Chr2:66554984-66555003 MsG0280010240.01.T01:CDS 60.0%
! GTGCAGGGAGTGCACTGAAG+CGG + Chr2:66554237-66554256 None:intergenic 60.0%
! TGAGGGGGCACAGAATCTCG+TGG - Chr2:66554069-66554088 MsG0280010240.01.T01:intron 60.0%
GAAGTCCTCCGTAGCTCCGG+CGG - Chr2:66552747-66552766 MsG0280010240.01.T01:three_prime_UTR 65.0%
TGACTGTGGTCGCCCTCCAG+AGG - Chr2:66554495-66554514 MsG0280010240.01.T01:intron 65.0%
! AACGTCGGCTACCGTCGCTG+AGG - Chr2:66552719-66552738 MsG0280010240.01.T01:three_prime_UTR 65.0%
TTTCGCCGCCGGAGCTACGG+AGG + Chr2:66552755-66552774 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 66552573 66555165 66552573 ID=MsG0280010240.01;Name=MsG0280010240.01
Chr2 mRNA 66552573 66555165 66552573 ID=MsG0280010240.01.T01;Parent=MsG0280010240.01;Name=MsG0280010240.01.T01;_AED=0.22;_eAED=0.22;_QI=75|1|1|1|1|1|2|280|389
Chr2 exon 66552573 66553696 66552573 ID=MsG0280010240.01.T01:exon:5446;Parent=MsG0280010240.01.T01
Chr2 exon 66554765 66555165 66554765 ID=MsG0280010240.01.T01:exon:5445;Parent=MsG0280010240.01.T01
Chr2 five_prime_UTR 66555091 66555165 66555091 ID=MsG0280010240.01.T01:five_prime_utr;Parent=MsG0280010240.01.T01
Chr2 CDS 66554765 66555090 66554765 ID=MsG0280010240.01.T01:cds;Parent=MsG0280010240.01.T01
Chr2 CDS 66552853 66553696 66552853 ID=MsG0280010240.01.T01:cds;Parent=MsG0280010240.01.T01
Chr2 three_prime_UTR 66552573 66552852 66552573 ID=MsG0280010240.01.T01:three_prime_utr;Parent=MsG0280010240.01.T01
Gene Sequence

>MsG0280010240.01.T01

ATGGAAGTTTTCTTTCTGTCACATGAGTTATCTGATCTCTGTCTCGGTAAGCCGCCGTTGAAGTCGCTTTCAACGTCGGCTACCGTCGCTGAGGCAATTGAAGTCCTCCGTAGCTCCGGCGGCGAAAGTTTCGTCAGTGTTTGGAACTGTGACCACTCTGAATTCGGTCAATGTCAATGTGTTGGGAAAATTTGTATGGTTGATGTAATTGTTTACCTTTGCAAAGAACAAAATCTTTTGTGTCCTTCCAAAGCTCTTAAGGCTTCAATTTCCAATGTTTTGAATAAGGTTGATGGTCTTGTTGTTCATCTAGAACCTTCATCTAGCTTATTGGATGCCATTGATCTCATACTTGAGGGGGCACAGAATCTCGTGGTGCCAATTTTGCAGACAAAAAAAGGTGGCCTTTCAAGGAGAAAACTGCAGCAGAAGTCATTAACAATCAACAGCCACAACGGTGTTGAGTTCTGTTGGTTAACACAAGAGGATGTGATCAGGTTCTTGCTTGGTTCCATTGGCCGCTTCAGTGCACTCCCTGCACAATCCATCGATCGTCTCAATATTATCAGCTCGGATGTGCTCTCCATTGATTACTCTTCCCAGGCGTCTTCTGCTGTTGAAGCCATCTCAAAGTCCCTCACACAACAAACTTCTGTTGCAATTGTCGACGGTGATGGGACATTCATCGGTGAGATATCACCCTTCACACTTGCATGTTGTGATGAGACGGTTGCGGCCGCCATCACAACTTTGTCTGCAGGGGGCTTGATGGCCTACATTGACTGTGGTCGCCCTCCAGAGGATCTAGTTAGGGTTGTAAAGGCAAGGTTGAAGGAAAAGAATTTGGAAAAACTGCTACAAGAGTTTACGCTTTTGACTTCTTTGACCGGTGATATGTCATCCTCCTCTTCATCTGATGAGGACAGTCCAGCGAGGAGTTTGACACGGTCCGGAAAGTATGCAAGGTCATCGAGCTACTCGGCCAAGTATGTGAGGAATGTAGAGGCTATAGTTTGTCATCCCAAGAGCTCTTTGATTGCTGTGATGATGCAAGCAATTGCTAATAGAGTGAATTACTTGTGGGTTATTGAGGATGATTGGAGCTTAGTTGGCATTGTTACTTTTTCTAATATCTTGAAGGTGTTCAAAGAGCGTTTAGAAGTTATTTAG

Protein sequence

>MsG0280010240.01.T01

MEVFFLSHELSDLCLGKPPLKSLSTSATVAEAIEVLRSSGGESFVSVWNCDHSEFGQCQCVGKICMVDVIVYLCKEQNLLCPSKALKASISNVLNKVDGLVVHLEPSSSLLDAIDLILEGAQNLVVPILQTKKGGLSRRKLQQKSLTINSHNGVEFCWLTQEDVIRFLLGSIGRFSALPAQSIDRLNIISSDVLSIDYSSQASSAVEAISKSLTQQTSVAIVDGDGTFIGEISPFTLACCDETVAAAITTLSAGGLMAYIDCGRPPEDLVRVVKARLKEKNLEKLLQEFTLLTSLTGDMSSSSSSDEDSPARSLTRSGKYARSSSYSAKYVRNVEAIVCHPKSSLIAVMMQAIANRVNYLWVIEDDWSLVGIVTFSNILKVFKERLEVI*