AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009526.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009526.01.T01 MTR_2g065470 97.093 344 9 1 1 344 1 343 0.0 683
MsG0280009526.01.T01 MTR_2g065470 97.093 344 9 1 1 344 1 343 0.0 682
MsG0280009526.01.T01 MTR_2g065470 98.239 284 5 0 61 344 1 284 0.0 578
MsG0280009526.01.T01 MTR_3g085850 71.910 267 74 1 79 344 2 268 2.64e-139 399
MsG0280009526.01.T01 MTR_6g022630 71.970 264 73 1 82 344 2 265 1.03e-138 397
MsG0280009526.01.T01 MTR_4g103920 70.722 263 76 1 83 344 5 267 2.77e-135 385
MsG0280009526.01.T01 MTR_4g103920 70.722 263 76 1 83 344 5 267 2.36e-134 386
MsG0280009526.01.T01 MTR_3g085850 73.094 223 59 1 123 344 1 223 6.53e-116 338
MsG0280009526.01.T01 MTR_3g115920 52.030 271 122 6 80 344 82 350 3.72e-76 240
MsG0280009526.01.T01 MTR_3g115920 52.030 271 122 6 80 344 82 350 1.27e-75 240
MsG0280009526.01.T01 MTR_7g084800 51.321 265 124 4 83 344 69 331 1.70e-72 230
MsG0280009526.01.T01 MTR_8g046560 75.168 149 37 0 196 344 54 202 1.01e-70 229
MsG0280009526.01.T01 MTR_3g115920 54.884 215 92 4 134 344 3 216 3.01e-62 201
MsG0280009526.01.T01 MTR_8g464820 71.910 89 25 0 256 344 1 89 4.26e-35 131
MsG0280009526.01.T01 MTR_0776s0010 47.541 122 59 3 86 204 1791 1910 1.31e-24 105
MsG0280009526.01.T01 MTR_1680s0010 49.438 89 44 1 256 344 1 88 6.31e-17 81.6
MsG0280009526.01.T01 MTR_2g078600 75.000 48 12 0 296 343 84 131 6.12e-16 74.3
MsG0280009526.01.T02 MTR_2g065470 97.093 344 9 1 1 344 1 343 0.0 683
MsG0280009526.01.T02 MTR_2g065470 97.093 344 9 1 1 344 1 343 0.0 682
MsG0280009526.01.T02 MTR_2g065470 98.239 284 5 0 61 344 1 284 0.0 578
MsG0280009526.01.T02 MTR_3g085850 71.910 267 74 1 79 344 2 268 2.64e-139 399
MsG0280009526.01.T02 MTR_6g022630 71.970 264 73 1 82 344 2 265 1.03e-138 397
MsG0280009526.01.T02 MTR_4g103920 70.722 263 76 1 83 344 5 267 2.77e-135 385
MsG0280009526.01.T02 MTR_4g103920 70.722 263 76 1 83 344 5 267 2.36e-134 386
MsG0280009526.01.T02 MTR_3g085850 73.094 223 59 1 123 344 1 223 6.53e-116 338
MsG0280009526.01.T02 MTR_3g115920 52.030 271 122 6 80 344 82 350 3.72e-76 240
MsG0280009526.01.T02 MTR_3g115920 52.030 271 122 6 80 344 82 350 1.27e-75 240
MsG0280009526.01.T02 MTR_7g084800 51.321 265 124 4 83 344 69 331 1.70e-72 230
MsG0280009526.01.T02 MTR_8g046560 75.168 149 37 0 196 344 54 202 1.01e-70 229
MsG0280009526.01.T02 MTR_3g115920 54.884 215 92 4 134 344 3 216 3.01e-62 201
MsG0280009526.01.T02 MTR_8g464820 71.910 89 25 0 256 344 1 89 4.26e-35 131
MsG0280009526.01.T02 MTR_0776s0010 47.541 122 59 3 86 204 1791 1910 1.31e-24 105
MsG0280009526.01.T02 MTR_1680s0010 49.438 89 44 1 256 344 1 88 6.31e-17 81.6
MsG0280009526.01.T02 MTR_2g078600 75.000 48 12 0 296 343 84 131 6.12e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009526.01.T01 AT1G79530 77.874 348 72 3 1 344 1 347 0.0 539
MsG0280009526.01.T01 AT1G16300 75.942 345 82 1 1 344 1 345 0.0 535
MsG0280009526.01.T01 AT1G13440 71.483 263 74 1 83 344 5 267 1.48e-138 397
MsG0280009526.01.T01 AT3G04120 70.722 263 76 1 83 344 5 267 1.81e-137 394
MsG0280009526.01.T01 AT1G13440 63.878 263 66 2 83 344 5 239 1.60e-115 337
MsG0280009526.01.T01 AT1G42970 50.000 286 132 7 65 344 66 346 3.54e-81 254
MsG0280009526.01.T01 AT1G12900 51.698 265 123 4 83 344 15 277 6.61e-74 232
MsG0280009526.01.T01 AT1G12900 51.698 265 123 4 83 344 15 277 6.61e-74 232
MsG0280009526.01.T01 AT1G12900 51.698 265 123 4 83 344 64 326 1.29e-73 233
MsG0280009526.01.T01 AT1G12900 51.698 265 123 4 83 344 106 368 2.65e-73 234
MsG0280009526.01.T01 AT3G26650 50.943 265 125 4 83 344 61 323 5.41e-72 229
MsG0280009526.01.T01 AT1G12900 53.977 176 79 2 170 344 70 244 8.67e-46 159
MsG0280009526.01.T02 AT1G79530 77.874 348 72 3 1 344 1 347 0.0 539
MsG0280009526.01.T02 AT1G16300 75.942 345 82 1 1 344 1 345 0.0 535
MsG0280009526.01.T02 AT1G13440 71.483 263 74 1 83 344 5 267 1.48e-138 397
MsG0280009526.01.T02 AT3G04120 70.722 263 76 1 83 344 5 267 1.81e-137 394
MsG0280009526.01.T02 AT1G13440 63.878 263 66 2 83 344 5 239 1.60e-115 337
MsG0280009526.01.T02 AT1G42970 50.000 286 132 7 65 344 66 346 3.54e-81 254
MsG0280009526.01.T02 AT1G12900 51.698 265 123 4 83 344 15 277 6.61e-74 232
MsG0280009526.01.T02 AT1G12900 51.698 265 123 4 83 344 15 277 6.61e-74 232
MsG0280009526.01.T02 AT1G12900 51.698 265 123 4 83 344 64 326 1.29e-73 233
MsG0280009526.01.T02 AT1G12900 51.698 265 123 4 83 344 106 368 2.65e-73 234
MsG0280009526.01.T02 AT3G26650 50.943 265 125 4 83 344 61 323 5.41e-72 229
MsG0280009526.01.T02 AT1G12900 53.977 176 79 2 170 344 70 244 8.67e-46 159

Find 22 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCCACCGATCTCTTTC+AGG 0.153321 2:-53707007 MsG0280009526.01.T01:intron
TTTCTCAGCGGAGCTTCTTA+TGG 0.274852 2:+53707218 None:intergenic
ATTCTTTCCTTCGTAGTAGT+TGG 0.395577 2:-53707147 MsG0280009526.01.T01:five_prime_UTR
GAAGAAGCGGCCATTGGAGG+AGG 0.512792 2:+53707060 None:intergenic
GTCGTAGGTGGAGAAGGGAC+GGG 0.517467 2:+53707285 None:intergenic
ATCGAAGAAGCGGCCATTGG+AGG 0.522407 2:+53707057 None:intergenic
AGGATCGAAGAAGCGGCCAT+TGG 0.525207 2:+53707054 None:intergenic
GAAGCGGCCATTGGAGGAGG+AGG 0.525836 2:+53707063 None:intergenic
GTATTAGTCGTAGGTGGAGA+AGG 0.526836 2:+53707279 None:intergenic
TCGTAGGTGGAGAAGGGACG+GGG 0.530759 2:+53707286 None:intergenic
AGTCGTAGGTGGAGAAGGGA+CGG 0.546994 2:+53707284 None:intergenic
GACGGGGTTGTGATCCTCTA+CGG 0.548125 2:+53707302 None:intergenic
AGAAGAAACCTGAAAGAGAT+CGG 0.581369 2:+53706999 None:intergenic
GAAACCTGAAAGAGATCGGT+GGG 0.597132 2:+53707003 None:intergenic
TATTAGTCGTAGGTGGAGAA+GGG 0.603091 2:+53707280 None:intergenic
AAGAAACGATGGCAGATCTG+AGG 0.617817 2:+53707034 None:intergenic
ATCACTGTATTAGTCGTAGG+TGG 0.620550 2:+53707273 None:intergenic
TACATCACTGTATTAGTCGT+AGG 0.622892 2:+53707270 None:intergenic
AGATCTGAGGATCGAAGAAG+CGG 0.631339 2:+53707047 None:intergenic
TGGTGTAGGGTGATCCGTAG+AGG 0.639796 2:-53707316 None:intergenic
AGAAACCTGAAAGAGATCGG+TGG 0.652000 2:+53707002 None:intergenic
GGGAGAAGATGAAGAAACGA+TGG 0.657476 2:+53707023 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAACATGAAATATT+AGG + Chr2:53700972-53700991 None:intergenic 10.0%
!! ATCATATACATTTATTAAAT+TGG - Chr2:53707135-53707154 MsG0280009526.01.T01:five_prime_UTR 10.0%
!! GAATATGATAAAATATTATA+TGG + Chr2:53700620-53700639 None:intergenic 10.0%
!! TATAAAATCTATTTATTTGT+GGG + Chr2:53706984-53707003 None:intergenic 10.0%
!!! AAAATGTTTATAGAAATTTT+GGG + Chr2:53703812-53703831 None:intergenic 10.0%
!!! AAATAAATAGATTTTATAGT+GGG - Chr2:53706986-53707005 MsG0280009526.01.T01:intron 10.0%
!!! AATCTAAAATATTAACATAA+CGG + Chr2:53701439-53701458 None:intergenic 10.0%
!!! ATTTTTAAGATTCAAATATA+TGG - Chr2:53699005-53699024 MsG0280009526.01.T01:intron 10.0%
!!! GTTTAATTTATATTTACATA+TGG + Chr2:53699127-53699146 None:intergenic 10.0%
!!! TTTCATGTTATATTTTAATT+TGG - Chr2:53700976-53700995 MsG0280009526.01.T01:intron 10.0%
!! AAGATATTTCTTTATATTTC+TGG - Chr2:53700725-53700744 MsG0280009526.01.T01:intron 15.0%
!! AGATATTTCTTTATATTTCT+GGG - Chr2:53700726-53700745 MsG0280009526.01.T01:intron 15.0%
!! ATACATTTATTAAATTGGTT+TGG - Chr2:53707140-53707159 MsG0280009526.01.T01:five_prime_UTR 15.0%
!! ATATATTTAGCATCAATAAA+AGG + Chr2:53701233-53701252 None:intergenic 15.0%
!! CTAATAGAAAAGAATTATTT+GGG + Chr2:53707018-53707037 None:intergenic 15.0%
!! CTATAAAATCTATTTATTTG+TGG + Chr2:53706985-53707004 None:intergenic 15.0%
!! TAATAGAAAAGAATTATTTG+GGG + Chr2:53707017-53707036 None:intergenic 15.0%
!! TATGAAAATACATAAAAACA+TGG + Chr2:53701353-53701372 None:intergenic 15.0%
!! TATGTACAAAAACAATAAAA+GGG + Chr2:53702144-53702163 None:intergenic 15.0%
!!! AAAAATGGTTTTGAAAAATA+AGG + Chr2:53699874-53699893 None:intergenic 15.0%
!!! AAATAATTCTTTTCTATTAG+GGG - Chr2:53707018-53707037 MsG0280009526.01.T01:CDS 15.0%
!!! AAATGATTGTATTTGTTTTT+AGG - Chr2:53699478-53699497 MsG0280009526.01.T01:intron 15.0%
!!! AAATGTTTATAGAAATTTTG+GGG + Chr2:53703811-53703830 None:intergenic 15.0%
!!! AATTTTTTGTTTTTTTCTTC+TGG - Chr2:53699276-53699295 MsG0280009526.01.T01:intron 15.0%
!!! ATCTAAAATATTAACATAAC+GGG + Chr2:53701438-53701457 None:intergenic 15.0%
!!! CAAATAAATAGATTTTATAG+TGG - Chr2:53706985-53707004 MsG0280009526.01.T01:intron 15.0%
!!! CAAATAATTCTTTTCTATTA+GGG - Chr2:53707017-53707036 MsG0280009526.01.T01:CDS 15.0%
!!! GAAAATGTTTATAGAAATTT+TGG + Chr2:53703813-53703832 None:intergenic 15.0%
!!! GTTGTTTTTTAAAATGAAAT+CGG + Chr2:53705852-53705833 None:intergenic 15.0%
!!! TAAATTTTATTTATAGCCAA+TGG + Chr2:53699400-53699419 None:intergenic 15.0%
!!! TATTCTTTTTATTTCAGTTA+TGG - Chr2:53701883-53701902 MsG0280009526.01.T01:intron 15.0%
!!! TTTTATTGATGCTAAATATA+TGG - Chr2:53701232-53701251 MsG0280009526.01.T01:intron 15.0%
!!! TTTTCAAAACCATTTTTTAT+TGG - Chr2:53699877-53699896 MsG0280009526.01.T01:intron 15.0%
!! AAGATATGAGAATCAAAAAA+AGG + Chr2:53698808-53698827 None:intergenic 20.0%
!! AATAAGATCATGAAATTCAT+AGG - Chr2:53703085-53703104 MsG0280009526.01.T01:intron 20.0%
!! ACAATTGAAACAACAAAAAT+CGG + Chr2:53700233-53700252 None:intergenic 20.0%
!! AGAGTAGAAAAAAATTAAAG+AGG + Chr2:53701930-53701949 None:intergenic 20.0%
!! ATGAATTTCATGATCTTATT+AGG + Chr2:53703085-53703104 None:intergenic 20.0%
!! CCTAATAGAAAAGAATTATT+TGG + Chr2:53707019-53707038 None:intergenic 20.0%
!! GTATGTACAAAAACAATAAA+AGG + Chr2:53702145-53702164 None:intergenic 20.0%
!! TAAAAATCCACAAGATTAAA+AGG - Chr2:53703738-53703757 MsG0280009526.01.T01:intron 20.0%
!! TCTCAAATATAAGCAAAAAT+TGG + Chr2:53699620-53699639 None:intergenic 20.0%
!! TCTCAAATATAAGCAAAATT+TGG - Chr2:53699533-53699552 MsG0280009526.01.T01:intron 20.0%
!! TTACATAACTACATTATGAA+TGG + Chr2:53701047-53701066 None:intergenic 20.0%
!! TTTCTTAGTTTATAAGTATC+TGG + Chr2:53700579-53700598 None:intergenic 20.0%
!!! AAAAAAGAAGTTGATGTATT+TGG + Chr2:53699595-53699614 None:intergenic 20.0%
!!! AATAATTCTTTTCTATTAGG+GGG - Chr2:53707019-53707038 MsG0280009526.01.T01:CDS 20.0%
!!! AATTTTTGTAATTTTCTCAG+CGG + Chr2:53698465-53698484 None:intergenic 20.0%
!!! AGAAAATTCTTATTGCTTTT+GGG - Chr2:53702875-53702894 MsG0280009526.01.T01:intron 20.0%
!!! AGGATATTTTTTTTTTCTCA+CGG + Chr2:53699742-53699761 None:intergenic 20.0%
!!! ATATTTTGTTCATCATTTCA+GGG - Chr2:53699995-53700014 MsG0280009526.01.T01:intron 20.0%
!!! ATCTTTGCTATGATTTTTAT+CGG - Chr2:53701702-53701721 MsG0280009526.01.T01:intron 20.0%
!!! ATGTTTTACTTGTTATTACT+AGG - Chr2:53698869-53698888 MsG0280009526.01.T01:intron 20.0%
!!! ATTCATCATTTTCATTTTCT+AGG - Chr2:53698566-53698585 MsG0280009526.01.T01:intron 20.0%
!!! CCAAATAATTCTTTTCTATT+AGG - Chr2:53707016-53707035 MsG0280009526.01.T01:CDS 20.0%
!!! GATTCAAATATATGGTTTTA+TGG - Chr2:53699013-53699032 MsG0280009526.01.T01:intron 20.0%
!!! TAGAAAATTCTTATTGCTTT+TGG - Chr2:53702874-53702893 MsG0280009526.01.T01:intron 20.0%
!!! TATGGTTTTATGGTTTTATT+TGG - Chr2:53699023-53699042 MsG0280009526.01.T01:intron 20.0%
!!! TCTAAAACATGAAAAGAAAT+TGG - Chr2:53701798-53701817 MsG0280009526.01.T01:intron 20.0%
!!! TGAACTTGGAATTATATTTT+GGG + Chr2:53703619-53703638 None:intergenic 20.0%
!!! TGGAAAATTGAGTTTTTTAA+AGG + Chr2:53701683-53701702 None:intergenic 20.0%
!!! TGTAGTCATTTTAAACAAAT+GGG - Chr2:53700922-53700941 MsG0280009526.01.T01:intron 20.0%
!!! TTCATCATTTTCATTTTCTA+GGG - Chr2:53698567-53698586 MsG0280009526.01.T01:intron 20.0%
!!! TTGAACTTGGAATTATATTT+TGG + Chr2:53703620-53703639 None:intergenic 20.0%
!!! TTGTAGTCATTTTAAACAAA+TGG - Chr2:53700921-53700940 MsG0280009526.01.T01:intron 20.0%
!!! TTTAAGCTTACTTTTTGATT+TGG - Chr2:53699313-53699332 MsG0280009526.01.T01:intron 20.0%
!!! TTTTGATTTGGTGAAATTTA+CGG - Chr2:53699325-53699344 MsG0280009526.01.T01:intron 20.0%
!!! TTTTTAGGTTCAGAAAATAT+TGG - Chr2:53699493-53699512 MsG0280009526.01.T01:intron 20.0%
! AAGACAATAGATGTTAACAA+TGG + Chr2:53703523-53703542 None:intergenic 25.0%
! AAGCTCAAATTAAGATTTGA+AGG + Chr2:53702620-53702639 None:intergenic 25.0%
! AATATAATTCCAAGTTCAAC+CGG - Chr2:53703621-53703640 MsG0280009526.01.T01:intron 25.0%
! ACTTGAAACATGTAAAGTAA+TGG + Chr2:53703499-53703518 None:intergenic 25.0%
! ATCATATTCCTGTTTCATTT+AGG - Chr2:53700631-53700650 MsG0280009526.01.T01:intron 25.0%
! ATGACTACAATTAAAAGATG+TGG + Chr2:53700911-53700930 None:intergenic 25.0%
! ATGTGAAAAATACACATTTC+AGG + Chr2:53699426-53699445 None:intergenic 25.0%
! ATTGATAGAAGTGAACTTTA+TGG - Chr2:53703167-53703186 MsG0280009526.01.T01:CDS 25.0%
! CAGAGAAAAATGTATATTTC+AGG + Chr2:53702951-53702970 None:intergenic 25.0%
! CTGTACAACTATAAAAACAT+TGG - Chr2:53702391-53702410 MsG0280009526.01.T01:intron 25.0%
! GACAAACATCCAATAAAAAA+TGG + Chr2:53699889-53699908 None:intergenic 25.0%
! GATAAAAATCATAGCAAAGA+TGG + Chr2:53701703-53701722 None:intergenic 25.0%
! GATCAATTATTCTTTCCTTA+AGG - Chr2:53703002-53703021 MsG0280009526.01.T01:CDS 25.0%
! GATCTATCTGAATCAATATA+AGG - Chr2:53703200-53703219 MsG0280009526.01.T01:CDS 25.0%
! GTAATATCTCTTTCAATACA+AGG - Chr2:53703135-53703154 MsG0280009526.01.T01:intron 25.0%
! TGTAGTAAGCTGTATAATAT+GGG - Chr2:53706947-53706966 MsG0280009526.01.T01:intron 25.0%
! TTGTAGTAAGCTGTATAATA+TGG - Chr2:53706946-53706965 MsG0280009526.01.T01:intron 25.0%
!! AACATTGCAATATTTTCCAT+TGG - Chr2:53699381-53699400 MsG0280009526.01.T01:intron 25.0%
!! AGCTGATATTATGATTTTCT+TGG + Chr2:53702669-53702688 None:intergenic 25.0%
!! CATATTTTGTTCATCATTTC+AGG - Chr2:53699994-53700013 MsG0280009526.01.T01:intron 25.0%
!! GGATTAAAAATGACAACTTT+TGG - Chr2:53699799-53699818 MsG0280009526.01.T01:intron 25.0%
!! TTTGCACAAATAAGCTATTT+TGG - Chr2:53705477-53705496 MsG0280009526.01.T01:intron 25.0%
!!! AACTTTTAAGGATATATTCC+AGG + Chr2:53701091-53701110 None:intergenic 25.0%
!!! AATTGATTTTTTTGGGGATA+GGG - Chr2:53703036-53703055 MsG0280009526.01.T01:intron 25.0%
!!! ACAATTATTTTGCGTGTATT+TGG - Chr2:53700367-53700386 MsG0280009526.01.T01:intron 25.0%
!!! AGAGCATTGATTAAAATTGT+TGG + Chr2:53700193-53700212 None:intergenic 25.0%
!!! ATCCTGGAATTGATTTTTTT+GGG - Chr2:53703029-53703048 MsG0280009526.01.T01:intron 25.0%
!!! ATGATGAATGATTTGTTTTC+TGG + Chr2:53698555-53698574 None:intergenic 25.0%
!!! CAATTATTTTGCGTGTATTT+GGG - Chr2:53700368-53700387 MsG0280009526.01.T01:intron 25.0%
!!! GAAAATTCTTATTGCTTTTG+GGG - Chr2:53702876-53702895 MsG0280009526.01.T01:intron 25.0%
!!! GAGCATTGATTAAAATTGTT+GGG + Chr2:53700192-53700211 None:intergenic 25.0%
!!! TATCCTGGAATTGATTTTTT+TGG - Chr2:53703028-53703047 MsG0280009526.01.T01:intron 25.0%
!!! TATTATACTGACTTTGTACA+GGG + Chr2:53700348-53700367 None:intergenic 25.0%
!!! TCTTTGCTATGATTTTTATC+GGG - Chr2:53701703-53701722 MsG0280009526.01.T01:intron 25.0%
!!! TTGTTGTTTTTGTACATAGA+GGG - Chr2:53701949-53701968 MsG0280009526.01.T01:intron 25.0%
!!! TTTTAGAATATCTATCCTCA+TGG + Chr2:53701785-53701804 None:intergenic 25.0%
!!! TTTTTATTTCAGTTATGGTC+AGG - Chr2:53701888-53701907 MsG0280009526.01.T01:intron 25.0%
!!! TTTTTGCTTATATTTGAGAC+CGG - Chr2:53699621-53699640 MsG0280009526.01.T01:intron 25.0%
ACAACTGTAGAAAAGGTAAA+AGG + Chr2:53701599-53701618 None:intergenic 30.0%
AGGTTGCAAAACAACATATT+TGG - Chr2:53700122-53700141 MsG0280009526.01.T01:intron 30.0%
ATTAGAAACAATGTCCATGT+TGG + Chr2:53702747-53702766 None:intergenic 30.0%
CAATTGTACAACTGTAGAAA+AGG + Chr2:53701606-53701625 None:intergenic 30.0%
CATTACATCCTAAATGAAAC+AGG + Chr2:53700642-53700661 None:intergenic 30.0%
CTCAAATTAAGATTTGAAGG+TGG + Chr2:53702617-53702636 None:intergenic 30.0%
CTTATAAGATGCTCATAGTT+TGG - Chr2:53701285-53701304 MsG0280009526.01.T01:intron 30.0%
GAAAGAATAATTGATCAAGC+GGG + Chr2:53702998-53703017 None:intergenic 30.0%
GAATAACTGAATGATCAAGT+TGG + Chr2:53703292-53703311 None:intergenic 30.0%
GATGTATTTCGTCCAAAATT+TGG - Chr2:53699568-53699587 MsG0280009526.01.T01:intron 30.0%
GGAAAGAATAATTGATCAAG+CGG + Chr2:53702999-53703018 None:intergenic 30.0%
GGGTTGAATCAAATCATAAT+GGG + Chr2:53703248-53703267 None:intergenic 30.0%
GTAGTAAGCTGTATAATATG+GGG - Chr2:53706948-53706967 MsG0280009526.01.T01:intron 30.0%
GTTGTACAATTGCACAAAAT+TGG - Chr2:53701614-53701633 MsG0280009526.01.T01:intron 30.0%
TATTTAGACATGTTGGCAAT+AGG - Chr2:53701489-53701508 MsG0280009526.01.T01:intron 30.0%
TGTAAGACTAATGAATCACA+TGG + Chr2:53700158-53700177 None:intergenic 30.0%
! ACACTACTTTGGAAATCAAT+GGG - Chr2:53702263-53702282 MsG0280009526.01.T01:CDS 30.0%
! ACCATGCAAATCTTCTAAAA+AGG + Chr2:53700871-53700890 None:intergenic 30.0%
! ACGCAAGCTTAAAACTTTTA+AGG + Chr2:53701103-53701122 None:intergenic 30.0%
! CGTCTTAACTTTTATCTTTC+AGG - Chr2:53702177-53702196 MsG0280009526.01.T01:intron 30.0%
! GATGTATTTGGTCCAAATTT+TGG + Chr2:53699583-53699602 None:intergenic 30.0%
! TTATCGGGTGTTTAAAGTTT+GGG - Chr2:53701718-53701737 MsG0280009526.01.T01:intron 30.0%
! TTTATCGGGTGTTTAAAGTT+TGG - Chr2:53701717-53701736 MsG0280009526.01.T01:intron 30.0%
! TTTGCTTTCCTTTTCTCTTT+CGG - Chr2:53703468-53703487 MsG0280009526.01.T01:CDS 30.0%
!! GTATAATATGGGGCTTTATT+AGG - Chr2:53706958-53706977 MsG0280009526.01.T01:intron 30.0%
!! GTATTATACTGACTTTGTAC+AGG + Chr2:53700349-53700368 None:intergenic 30.0%
!! TATTGATTCTTACCTGTTGT+TGG - Chr2:53700407-53700426 MsG0280009526.01.T01:intron 30.0%
!! TCCTTTTTAGAAGATTTGCA+TGG - Chr2:53700867-53700886 MsG0280009526.01.T01:intron 30.0%
!! TTAAGTGGGCTTTGAAATTT+GGG - Chr2:53707073-53707092 MsG0280009526.01.T01:exon 30.0%
!! TTTAAGTGGGCTTTGAAATT+TGG - Chr2:53707072-53707091 MsG0280009526.01.T01:exon 30.0%
!!! AATAGATTTTATAGTGGGCT+TGG - Chr2:53706991-53707010 MsG0280009526.01.T01:intron 30.0%
!!! CACATTTTTTTTCAATGTGC+AGG - Chr2:53701131-53701150 MsG0280009526.01.T01:intron 30.0%
!!! CTTGTTGTTTTTGTACATAG+AGG - Chr2:53701948-53701967 MsG0280009526.01.T01:intron 30.0%
!!! GAATTGATTTTTTTGGGGAT+AGG - Chr2:53703035-53703054 MsG0280009526.01.T01:intron 30.0%
!!! TCCTGGAATTGATTTTTTTG+GGG - Chr2:53703030-53703049 MsG0280009526.01.T01:intron 30.0%
!!! TGAGTTTTTTAAAGGACTAG+AGG + Chr2:53701675-53701694 None:intergenic 30.0%
!!! TGTTGTTTTTGTACATAGAG+GGG - Chr2:53701950-53701969 MsG0280009526.01.T01:intron 30.0%
!!! TTATAGAAATTTTGGGGCTT+GGG + Chr2:53703805-53703824 None:intergenic 30.0%
!!! TTTATAGAAATTTTGGGGCT+TGG + Chr2:53703806-53703825 None:intergenic 30.0%
!!! TTTTTTCAATGTGCAGGTTT+TGG - Chr2:53701137-53701156 MsG0280009526.01.T01:intron 30.0%
AAAACAATAAAAGGGCAACC+CGG + Chr2:53702136-53702155 None:intergenic 35.0%
AAACCTCTTCGTAACAATGA+AGG + Chr2:53699956-53699975 None:intergenic 35.0%
AAAGTCCTTCCTGAACTAAA+TGG - Chr2:53707190-53707209 MsG0280009526.01.T02:five_prime_UTR 35.0%
AAATGGAAAACTCACTGGAA+TGG - Chr2:53707207-53707226 MsG0280009526.01.T02:five_prime_UTR 35.0%
AAGACAAGGGTTGGAATTAA+CGG - Chr2:53700461-53700480 MsG0280009526.01.T01:intron 35.0%
AAGTCTGGCATCATCTATTT+AGG - Chr2:53702913-53702932 MsG0280009526.01.T01:CDS 35.0%
AATTCCAGGATATGTCCTTA+AGG + Chr2:53703020-53703039 None:intergenic 35.0%
AGAAGAAACCTGAAAGAGAT+CGG + Chr2:53698672-53698691 None:intergenic 35.0%
AGAGAAAACACTAAATGCAC+AGG + Chr2:53702567-53702586 None:intergenic 35.0%
AGGTTAAAGTTGTGAGCAAA+AGG - Chr2:53702290-53702309 MsG0280009526.01.T01:CDS 35.0%
AGTCTGGCATCATCTATTTA+GGG - Chr2:53702914-53702933 MsG0280009526.01.T01:CDS 35.0%
AGTGAACTTTATGGAGTTGA+TGG - Chr2:53703176-53703195 MsG0280009526.01.T01:CDS 35.0%
ATATGGAATGCAAAGCTTGT+AGG + Chr2:53700603-53700622 None:intergenic 35.0%
ATGTTGCATGTATGTGTTAC+TGG - Chr2:53702344-53702363 MsG0280009526.01.T01:intron 35.0%
ATTCTTTCCTTCGTAGTAGT+TGG - Chr2:53698521-53698540 MsG0280009526.01.T01:intron 35.0%
ATTGAACAGAGTCTTTAACC+AGG + Chr2:53701318-53701337 None:intergenic 35.0%
ATTTGAAGGTGGAAAGAGTA+AGG + Chr2:53702606-53702625 None:intergenic 35.0%
CCTAAAATCAATACTACCTC+CGG + Chr2:53699643-53699662 None:intergenic 35.0%
GAAAGAGAAAAGGAAAGCAA+AGG + Chr2:53703469-53703488 None:intergenic 35.0%
GAACTAAATGGAAAACTCAC+TGG - Chr2:53707202-53707221 MsG0280009526.01.T02:five_prime_UTR 35.0%
GCTCGTAGTATTCAAATTCA+TGG - Chr2:53699052-53699071 MsG0280009526.01.T01:intron 35.0%
GCTCTGATATTTAGACATGT+TGG - Chr2:53701482-53701501 MsG0280009526.01.T01:intron 35.0%
TACATCACTGTATTAGTCGT+AGG + Chr2:53698401-53698420 None:intergenic 35.0%
TAGTTAATCCAGAACAGAAG+TGG - Chr2:53699704-53699723 MsG0280009526.01.T01:intron 35.0%
TCCCCAAAAAAATCAATTCC+AGG + Chr2:53703034-53703053 None:intergenic 35.0%
TGGTTTATCCGAAAGAGAAA+AGG + Chr2:53703479-53703498 None:intergenic 35.0%
TTCAAGTATGATTCCACTCA+TGG - Chr2:53702208-53702227 MsG0280009526.01.T01:intron 35.0%
TTCTGACATGGAAGGAAATA+AGG + Chr2:53703314-53703333 None:intergenic 35.0%
TTGAAGGACATGGAAAATGA+TGG - Chr2:53702851-53702870 MsG0280009526.01.T01:intron 35.0%
TTGTATGCAAGTTTCTGACA+TGG + Chr2:53703326-53703345 None:intergenic 35.0%
TTTAAGCCCCATTACTATGT+GGG + Chr2:53703722-53703741 None:intergenic 35.0%
! ATTAGGGGGCTTTAATTTAG+TGG - Chr2:53707033-53707052 MsG0280009526.01.T01:CDS 35.0%
! CGGGTTGAATCAAATCATAA+TGG + Chr2:53703249-53703268 None:intergenic 35.0%
! CTTATCCTTTTCCACCATAT+AGG - Chr2:53702637-53702656 MsG0280009526.01.T01:intron 35.0%
! GACACTACTTTGGAAATCAA+TGG - Chr2:53702262-53702281 MsG0280009526.01.T01:CDS 35.0%
! GCTTTTGCATGAGAATTATG+TGG - Chr2:53703222-53703241 MsG0280009526.01.T01:CDS 35.0%
! TGCTTATATTTGAGACCAGA+GGG + Chr2:53699528-53699547 None:intergenic 35.0%
! TTAGGGGGCTTTAATTTAGT+GGG - Chr2:53707034-53707053 MsG0280009526.01.T01:CDS 35.0%
! TTGCTTATATTTGAGACCAG+AGG + Chr2:53699529-53699548 None:intergenic 35.0%
! TTGGTATTTTGTGAAATCCC+AGG - Chr2:53707159-53707178 MsG0280009526.01.T01:five_prime_UTR 35.0%
! TTTTAAGCCCCATTACTATG+TGG + Chr2:53703723-53703742 None:intergenic 35.0%
!! ACAACTTTTGGAGACTAAAC+TGG - Chr2:53699811-53699830 MsG0280009526.01.T01:intron 35.0%
!! AGTAGAGGTGTCAATATCAT+GGG - Chr2:53703675-53703694 MsG0280009526.01.T01:intron 35.0%
!! GTGAGTTTTCCATTTAGTTC+AGG + Chr2:53707202-53707221 None:intergenic 35.0%
!! GTTTTCCATTTAGTTCAGGA+AGG + Chr2:53707198-53707217 None:intergenic 35.0%
!! TAAGTGGGCTTTGAAATTTG+GGG - Chr2:53707074-53707093 MsG0280009526.01.T01:five_prime_UTR 35.0%
!! TTTAATTTAGTGGGCTTGGT+GGG - Chr2:53707043-53707062 MsG0280009526.01.T01:CDS 35.0%
!! TTTTGGAAGAATTGGAAGGT+TGG - Chr2:53701154-53701173 MsG0280009526.01.T01:intron 35.0%
!!! CTTGTCTGTTTTTGTGATTC+AGG - Chr2:53700061-53700080 MsG0280009526.01.T01:intron 35.0%
!!! GTTTTTTAAAGGACTAGAGG+AGG + Chr2:53701672-53701691 None:intergenic 35.0%
!!! TATAGAAATTTTGGGGCTTG+GGG + Chr2:53703804-53703823 None:intergenic 35.0%
AACAGCCTCTTGTGTAAAAC+AGG - Chr2:53702038-53702057 MsG0280009526.01.T01:CDS 40.0%
ACAGAATCACTCAACAGTAG+AGG + Chr2:53707111-53707130 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAACA+GGG - Chr2:53702039-53702058 MsG0280009526.01.T01:CDS 40.0%
ACCATTCAAGGGAGCTATTA+AGG - Chr2:53702231-53702250 MsG0280009526.01.T01:intron 40.0%
ACCTTAATAGCTCCCTTGAA+TGG + Chr2:53702235-53702254 None:intergenic 40.0%
ACGACAGAAACATTAGCAGT+AGG + Chr2:53707244-53707263 None:intergenic 40.0%
ACTCCTTCATTGTTACGAAG+AGG - Chr2:53699950-53699969 MsG0280009526.01.T01:intron 40.0%
AGCTAAATCCACTTCTGTTC+TGG + Chr2:53699715-53699734 None:intergenic 40.0%
AGGAGGGAACTCAATAAAGA+TGG + Chr2:53702830-53702849 None:intergenic 40.0%
AGTAACACCTCCACAAATAC+TGG + Chr2:53702373-53702392 None:intergenic 40.0%
AGTTACTCAGAAAACAGAGC+TGG - Chr2:53699354-53699373 MsG0280009526.01.T01:intron 40.0%
ATCACTGTATTAGTCGTAGG+TGG + Chr2:53698398-53698417 None:intergenic 40.0%
ATCCAGAAGTTCCTATCGTA+GGG - Chr2:53699762-53699781 MsG0280009526.01.T01:intron 40.0%
ATGCAAGTTTCTGACATGGA+AGG + Chr2:53703322-53703341 None:intergenic 40.0%
ATGGTCCTTCAATGAAGGAT+TGG - Chr2:53703574-53703593 MsG0280009526.01.T01:intron 40.0%
CACCAGCAGAAAAATTTCCT+CGG + Chr2:53699930-53699949 None:intergenic 40.0%
CAGAACATTCCAACTGAATC+AGG + Chr2:53701551-53701570 None:intergenic 40.0%
CATTCCAACTGAATCAGGAT+CGG + Chr2:53701546-53701565 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - Chr2:53702070-53702089 MsG0280009526.01.T01:CDS 40.0%
CTCTTGTGTAAAACAGGGTA+AGG - Chr2:53702044-53702063 MsG0280009526.01.T01:CDS 40.0%
CTTCAATGAAGGATTGGAGA+GGG - Chr2:53703580-53703599 MsG0280009526.01.T01:intron 40.0%
CTTTCCTTAAGGACATATCC+TGG - Chr2:53703013-53703032 MsG0280009526.01.T01:intron 40.0%
GAAGACATACAACTCCAACA+TGG - Chr2:53702730-53702749 MsG0280009526.01.T01:intron 40.0%
GACTATGTCATTGAGTCTTC+AGG - Chr2:53702485-53702504 MsG0280009526.01.T01:intron 40.0%
GCAACACAAAAGACTGTAGA+TGG - Chr2:53703555-53703574 MsG0280009526.01.T01:intron 40.0%
GTAAACTTTGCTACAAAGCC+TGG - Chr2:53701070-53701089 MsG0280009526.01.T01:intron 40.0%
GTATTAGTTCAAAGTCCACG+AGG - Chr2:53700102-53700121 MsG0280009526.01.T01:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG - Chr2:53701995-53702014 MsG0280009526.01.T01:intron 40.0%
TACGATAGGAACTTCTGGAT+AGG + Chr2:53699762-53699781 None:intergenic 40.0%
TACGCAATGCAAACAAACCT+TGG + Chr2:53702804-53702823 None:intergenic 40.0%
TATCCAGAAGTTCCTATCGT+AGG - Chr2:53699761-53699780 MsG0280009526.01.T01:intron 40.0%
TATTAGTCGTAGGTGGAGAA+GGG + Chr2:53698391-53698410 None:intergenic 40.0%
TCATAGTTTGGTTGTTGTCC+TGG - Chr2:53701297-53701316 MsG0280009526.01.T01:intron 40.0%
TCGGCATCTTTCACATAATC+AGG + Chr2:53699911-53699930 None:intergenic 40.0%
TGATTATGTGAAAGATGCCG+AGG - Chr2:53699910-53699929 MsG0280009526.01.T01:intron 40.0%
TGCTTTGACATCTTCATAGG+AGG + Chr2:53707296-53707315 None:intergenic 40.0%
TGTAGATGGTCCTTCAATGA+AGG - Chr2:53703569-53703588 MsG0280009526.01.T01:intron 40.0%
TTCAATGAAGGATTGGAGAG+GGG - Chr2:53703581-53703600 MsG0280009526.01.T01:intron 40.0%
TTCAGTTATGGTCAGGTACT+AGG - Chr2:53701895-53701914 MsG0280009526.01.T01:intron 40.0%
TTTGGAAATCAATGGGAAGC+AGG - Chr2:53702270-53702289 MsG0280009526.01.T01:CDS 40.0%
TTTGTTCATCATTTCAGGGC+TGG - Chr2:53699999-53700018 MsG0280009526.01.T01:intron 40.0%
! AAAAAGTGTGTCCCTACGAT+AGG + Chr2:53699776-53699795 None:intergenic 40.0%
! ATCATGGGGCCTTGAAATTT+TGG - Chr2:53703690-53703709 MsG0280009526.01.T01:intron 40.0%
! ATGTGGGCCTTTTAATCTTG+TGG + Chr2:53703748-53703767 None:intergenic 40.0%
! CAAGGGAGCTATTAAGGTTT+TGG - Chr2:53702237-53702256 MsG0280009526.01.T01:intron 40.0%
! CATTTTCCATGTCCTTCAAG+AGG + Chr2:53702850-53702869 None:intergenic 40.0%
! CTTACCCTGTTTTACACAAG+AGG + Chr2:53702046-53702065 None:intergenic 40.0%
! CTTCTTCGTCTTTTTGCGTA+TGG - Chr2:53698982-53699001 MsG0280009526.01.T01:intron 40.0%
! GTTTTTGTGATTCAGGTGCT+TGG - Chr2:53700068-53700087 MsG0280009526.01.T01:intron 40.0%
! TAACATAACGGGAAACAACG+AGG + Chr2:53701427-53701446 None:intergenic 40.0%
! TACTGCTAATGTTTCTGTCG+TGG - Chr2:53707243-53707262 MsG0280009526.01.T02:five_prime_UTR 40.0%
! TTACTGGTTGCCAGTATTTG+TGG - Chr2:53702360-53702379 MsG0280009526.01.T01:intron 40.0%
! TTGCTTATATTTGAGACCGG+AGG - Chr2:53699624-53699643 MsG0280009526.01.T01:intron 40.0%
! TTTTGCACCAACTACTACGA+AGG + Chr2:53698531-53698550 None:intergenic 40.0%
!! AGGAAAGCAAAGGCTTTAAG+TGG + Chr2:53703459-53703478 None:intergenic 40.0%
!! ATCGTAGGGACACACTTTTT+CGG - Chr2:53699776-53699795 MsG0280009526.01.T01:intron 40.0%
!! CTTTAATTTAGTGGGCTTGG+TGG - Chr2:53707042-53707061 MsG0280009526.01.T01:CDS 40.0%
!! GAGTAGAGGTGTCAATATCA+TGG - Chr2:53703674-53703693 MsG0280009526.01.T01:intron 40.0%
!! GTAGAGGTGTCAATATCATG+GGG - Chr2:53703676-53703695 MsG0280009526.01.T01:intron 40.0%
!! TGCTGCTTTGACATCTTCAT+AGG + Chr2:53707299-53707318 None:intergenic 40.0%
!! TTAATTTAGTGGGCTTGGTG+GGG - Chr2:53707044-53707063 MsG0280009526.01.T01:CDS 40.0%
!!! CAGGTTTTGGAAGAATTGGA+AGG - Chr2:53701150-53701169 MsG0280009526.01.T01:intron 40.0%
!!! CCGGAGGTAGTATTGATTTT+AGG - Chr2:53699640-53699659 MsG0280009526.01.T01:intron 40.0%
!!! CTTGAGGGCTTTTGATTTGT+GGG + Chr2:53703780-53703799 None:intergenic 40.0%
!!! GGTTTTGGATGACACTACTT+TGG - Chr2:53702252-53702271 MsG0280009526.01.T01:CDS 40.0%
!!! TATGTTGTTTTGCAACCTCG+TGG + Chr2:53700120-53700139 None:intergenic 40.0%
!!! TGCTTTTGGGGTATCCTTAA+CGG - Chr2:53702888-53702907 MsG0280009526.01.T01:CDS 40.0%
!!! TGTGCAGGTTTTGGAAGAAT+TGG - Chr2:53701146-53701165 MsG0280009526.01.T01:intron 40.0%
AACATAGGTGCATCAGCAGA+TGG + Chr2:53702692-53702711 None:intergenic 45.0%
AAGAAACGATGGCAGATCTG+AGG + Chr2:53698637-53698656 None:intergenic 45.0%
AGAAACCTGAAAGAGATCGG+TGG + Chr2:53698669-53698688 None:intergenic 45.0%
AGATCTGAGGATCGAAGAAG+CGG + Chr2:53698624-53698643 None:intergenic 45.0%
AGGTGGAAAGAGTAAGGCAA+AGG + Chr2:53702600-53702619 None:intergenic 45.0%
ATCTCTTACCTTTGCAGCAC+CGG + Chr2:53703643-53703662 None:intergenic 45.0%
ATTGAGTTCCCTCCTCTTGA+AGG - Chr2:53702835-53702854 MsG0280009526.01.T01:intron 45.0%
CAACTTTACTAGTTGCGCCA+AGG + Chr2:53701979-53701998 None:intergenic 45.0%
CCACAAATCAAAAGCCCTCA+AGG - Chr2:53703778-53703797 MsG0280009526.01.T01:intron 45.0%
CCTCTCCAATCCTTCATTGA+AGG + Chr2:53703582-53703601 None:intergenic 45.0%
CCTTCAATGAAGGATTGGAG+AGG - Chr2:53703579-53703598 MsG0280009526.01.T01:intron 45.0%
GAAACCTGAAAGAGATCGGT+GGG + Chr2:53698668-53698687 None:intergenic 45.0%
GAACAGACAAGACCAACAAC+AGG + Chr2:53700422-53700441 None:intergenic 45.0%
GAGGAGTTTGGTATCGTTGA+AGG - Chr2:53703388-53703407 MsG0280009526.01.T01:CDS 45.0%
GATGCACCTATGTTTGTGGT+CGG - Chr2:53702698-53702717 MsG0280009526.01.T01:intron 45.0%
GATGGACAACTGTTGAGTAG+AGG - Chr2:53703660-53703679 MsG0280009526.01.T01:intron 45.0%
GCGTACAATACACCAAATGG+TGG - Chr2:53702069-53702088 MsG0280009526.01.T01:CDS 45.0%
GCTGCGTACAATACACCAAA+TGG - Chr2:53702066-53702085 MsG0280009526.01.T01:CDS 45.0%
GGGAGAAGATGAAGAAACGA+TGG + Chr2:53698648-53698667 None:intergenic 45.0%
GTATTAGTCGTAGGTGGAGA+AGG + Chr2:53698392-53698411 None:intergenic 45.0%
GTCATGTGACTGAAAGGTCA+CGG - Chr2:53702001-53702020 MsG0280009526.01.T01:intron 45.0%
TACTCAGAAAACAGAGCTGG+AGG - Chr2:53699357-53699376 MsG0280009526.01.T01:intron 45.0%
TAGACATGTTGGCAATAGGC+AGG - Chr2:53701493-53701512 MsG0280009526.01.T01:intron 45.0%
TATGCCGATCCTGATTCAGT+TGG - Chr2:53701539-53701558 MsG0280009526.01.T01:intron 45.0%
TCAATGAAGGATTGGAGAGG+GGG - Chr2:53703582-53703601 MsG0280009526.01.T01:intron 45.0%
TCAGTACAGTACATGCCATG+AGG - Chr2:53701767-53701786 MsG0280009526.01.T01:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG - Chr2:53702002-53702021 MsG0280009526.01.T01:intron 45.0%
TCCACTCATGGACCATTCAA+GGG - Chr2:53702220-53702239 MsG0280009526.01.T01:intron 45.0%
TGCAAACAAACCTTGGCAAG+AGG + Chr2:53702797-53702816 None:intergenic 45.0%
TGCTGATGCACCTATGTTTG+TGG - Chr2:53702694-53702713 MsG0280009526.01.T01:intron 45.0%
TGTACATAGAGGGGTAACCT+TGG - Chr2:53701959-53701978 MsG0280009526.01.T01:intron 45.0%
TGTTACGTGTAGCTACTTCG+CGG - Chr2:53701177-53701196 MsG0280009526.01.T01:intron 45.0%
TTCACTCCGACCACAAACAT+AGG + Chr2:53702707-53702726 None:intergenic 45.0%
TTCCACTCATGGACCATTCA+AGG - Chr2:53702219-53702238 MsG0280009526.01.T01:intron 45.0%
TTCCATGTCCTTCAAGAGGA+GGG + Chr2:53702846-53702865 None:intergenic 45.0%
TTCTCAGAAACTGCAATGCC+CGG - Chr2:53700281-53700300 MsG0280009526.01.T01:intron 45.0%
TTGTGGGCTTGCATGAATGT+GGG + Chr2:53703764-53703783 None:intergenic 45.0%
TTTCCATGTCCTTCAAGAGG+AGG + Chr2:53702847-53702866 None:intergenic 45.0%
TTTCTCAGCGGAGCTTCTTA+TGG + Chr2:53698453-53698472 None:intergenic 45.0%
TTTCTTGGCACCAGCCTATA+TGG + Chr2:53702654-53702673 None:intergenic 45.0%
TTTGTGAAATCCCAGGCTGT+TGG - Chr2:53707166-53707185 MsG0280009526.01.T01:five_prime_UTR 45.0%
TTTGTGGGCTTGCATGAATG+TGG + Chr2:53703765-53703784 None:intergenic 45.0%
! ACCAGCCTATATGGTGGAAA+AGG + Chr2:53702645-53702664 None:intergenic 45.0%
! ACTGACTTTGTACAGGGAGA+GGG + Chr2:53700342-53700361 None:intergenic 45.0%
! ATTTTCACCTCCTCCTCCAA+TGG - Chr2:53698598-53698617 MsG0280009526.01.T01:intron 45.0%
! TCCTTTTCCACCATATAGGC+TGG - Chr2:53702641-53702660 MsG0280009526.01.T01:intron 45.0%
! TGCCGAGGAAATTTTTCTGC+TGG - Chr2:53699925-53699944 MsG0280009526.01.T01:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + Chr2:53702035-53702054 None:intergenic 45.0%
!! GAAAGCGTCATCGCATTTGA+AGG - Chr2:53702526-53702545 MsG0280009526.01.T01:intron 45.0%
!! GGGCTTTAATTTAGTGGGCT+TGG - Chr2:53707039-53707058 MsG0280009526.01.T01:CDS 45.0%
!! TAATTTAGTGGGCTTGGTGG+GGG - Chr2:53707045-53707064 MsG0280009526.01.T01:CDS 45.0%
!! TACTGACTTTGTACAGGGAG+AGG + Chr2:53700343-53700362 None:intergenic 45.0%
!!! AGGAGGCATTCTTTTGAAGC+CGG + Chr2:53707279-53707298 None:intergenic 45.0%
!!! CCTTGAGGGCTTTTGATTTG+TGG + Chr2:53703781-53703800 None:intergenic 45.0%
!!! CTTTTGGGGTATCCTTAACG+GGG - Chr2:53702890-53702909 MsG0280009526.01.T01:CDS 45.0%
!!! GCTTTTGGGGTATCCTTAAC+GGG - Chr2:53702889-53702908 MsG0280009526.01.T01:CDS 45.0%
!!! TCGTAGGGACACACTTTTTC+GGG - Chr2:53699777-53699796 MsG0280009526.01.T01:intron 45.0%
!!! TGGTGGGGGCTTTTTTAAGT+GGG - Chr2:53707059-53707078 MsG0280009526.01.T01:exon 45.0%
!!! TTGGTGGGGGCTTTTTTAAG+TGG - Chr2:53707058-53707077 MsG0280009526.01.T01:exon 45.0%
AAGGACTTTGCCAACAGCCT+GGG + Chr2:53707179-53707198 None:intergenic 50.0%
ACAACCGTGCATGCAACAAC+AGG - Chr2:53703418-53703437 MsG0280009526.01.T01:CDS 50.0%
CAGCACCAAAATCACCCCAA+GGG + Chr2:53702466-53702485 None:intergenic 50.0%
CTGGTTGCCAGTATTTGTGG+AGG - Chr2:53702363-53702382 MsG0280009526.01.T01:intron 50.0%
GAGACCTGTTGTTGCATGCA+CGG + Chr2:53703425-53703444 None:intergenic 50.0%
GGTGTATGCAAATCTGCGCA+TGG - Chr2:53700997-53701016 MsG0280009526.01.T01:intron 50.0%
GTATCCTTAACGGGGAAGTC+TGG - Chr2:53702898-53702917 MsG0280009526.01.T01:CDS 50.0%
GTCCCTACGATAGGAACTTC+TGG + Chr2:53699767-53699786 None:intergenic 50.0%
GTGATTCAGGTGCTTGGCAA+TGG - Chr2:53700074-53700093 MsG0280009526.01.T01:intron 50.0%
GTTACGTGTAGCTACTTCGC+GGG - Chr2:53701178-53701197 MsG0280009526.01.T01:intron 50.0%
GTTCAGACTCAAGCAGCACT+GGG - Chr2:53700438-53700457 MsG0280009526.01.T01:intron 50.0%
TATTCGTCAGGTGGTTCACG+AGG - Chr2:53703369-53703388 MsG0280009526.01.T01:intron 50.0%
TCAGCACCAAAATCACCCCA+AGG + Chr2:53702467-53702486 None:intergenic 50.0%
TCCCTTGAATGGTCCATGAG+TGG + Chr2:53702224-53702243 None:intergenic 50.0%
TGTTCAGACTCAAGCAGCAC+TGG - Chr2:53700437-53700456 MsG0280009526.01.T01:intron 50.0%
TTCCCTCCTCTTGAAGGACA+TGG - Chr2:53702841-53702860 MsG0280009526.01.T01:intron 50.0%
TTCTCCCACCGATCTCTTTC+AGG - Chr2:53698661-53698680 MsG0280009526.01.T01:intron 50.0%
TTCTGTACTCAGAGATCCCG+TGG - Chr2:53702436-53702455 MsG0280009526.01.T01:intron 50.0%
TTGATTCAACCCGAGCTCAC+TGG - Chr2:53703256-53703275 MsG0280009526.01.T01:intron 50.0%
TTGTCTTGCACCTCTTGCCA+AGG - Chr2:53702784-53702803 MsG0280009526.01.T01:intron 50.0%
! AAGCAGCACTGGGAAGACAA+GGG - Chr2:53700448-53700467 MsG0280009526.01.T01:intron 50.0%
! GAGATCCCTTGGGGTGATTT+TGG - Chr2:53702458-53702477 MsG0280009526.01.T01:intron 50.0%
! GGTGCTGCAAAGGTAAGAGA+TGG - Chr2:53703642-53703661 MsG0280009526.01.T01:intron 50.0%
!! AAGTTCAACCGGTGCTGCAA+AGG - Chr2:53703632-53703651 MsG0280009526.01.T01:intron 50.0%
!! TTTGCAGCACCGGTTGAACT+TGG + Chr2:53703633-53703652 None:intergenic 50.0%
!!! CGTAGGGACACACTTTTTCG+GGG - Chr2:53699778-53699797 MsG0280009526.01.T01:intron 50.0%
AAGGATTGGAGAGGGGGAAG+AGG - Chr2:53703588-53703607 MsG0280009526.01.T01:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - Chr2:53702014-53702033 MsG0280009526.01.T01:intron 55.0%
ACAAGAGCTCCCGCATATGC+AGG + Chr2:53702110-53702129 None:intergenic 55.0%
AGATCCCGTGGAGATCCCTT+GGG - Chr2:53702448-53702467 MsG0280009526.01.T01:intron 55.0%
AGCCCCATTACTATGTGGGC+TGG + Chr2:53703718-53703737 None:intergenic 55.0%
AGGATCGAAGAAGCGGCCAT+TGG + Chr2:53698617-53698636 None:intergenic 55.0%
AGTCGTAGGTGGAGAAGGGA+CGG + Chr2:53698387-53698406 None:intergenic 55.0%
ATCACCCCAAGGGATCTCCA+CGG + Chr2:53702456-53702475 None:intergenic 55.0%
ATCGAAGAAGCGGCCATTGG+AGG + Chr2:53698614-53698633 None:intergenic 55.0%
CAAGAGCTCCCGCATATGCA+GGG + Chr2:53702109-53702128 None:intergenic 55.0%
CAGGTGGTTCACGAGGAGTT+TGG - Chr2:53703376-53703395 MsG0280009526.01.T01:intron 55.0%
CCCCAGCCCACATAGTAATG+GGG - Chr2:53703713-53703732 MsG0280009526.01.T01:intron 55.0%
CTGTCGTGGACTTAACCTGC+CGG - Chr2:53707257-53707276 MsG0280009526.01.T02:five_prime_UTR 55.0%
CTTGGCACCAGCCTATATGG+TGG + Chr2:53702651-53702670 None:intergenic 55.0%
GAAGGACTTTGCCAACAGCC+TGG + Chr2:53707180-53707199 None:intergenic 55.0%
GACGGGGTTGTGATCCTCTA+CGG + Chr2:53698369-53698388 None:intergenic 55.0%
GATGCCAGACTTCCCCGTTA+AGG + Chr2:53702905-53702924 None:intergenic 55.0%
GCCCCAGCCCACATAGTAAT+GGG - Chr2:53703712-53703731 MsG0280009526.01.T01:intron 55.0%
GCCCCATTACTATGTGGGCT+GGG + Chr2:53703717-53703736 None:intergenic 55.0%
GCCTATCAGGGCTACAGCAA+CGG - Chr2:53700312-53700331 MsG0280009526.01.T01:intron 55.0%
GGGCTGGGGCCAAAATTTCA+AGG + Chr2:53703702-53703721 None:intergenic 55.0%
TATTGGCAGCATGCTCCCTC+TGG - Chr2:53699510-53699529 MsG0280009526.01.T01:intron 55.0%
TCCGTTGCTGTAGCCCTGAT+AGG + Chr2:53700316-53700335 None:intergenic 55.0%
! AGCACTGGGAAGACAAGGGT+TGG - Chr2:53700452-53700471 MsG0280009526.01.T01:intron 55.0%
! CAAGCAGCACTGGGAAGACA+AGG - Chr2:53700447-53700466 MsG0280009526.01.T01:intron 55.0%
! CCCCATTACTATGTGGGCTG+GGG + Chr2:53703716-53703735 None:intergenic 55.0%
!!! GGCATTCTTTTGAAGCCGGC+AGG + Chr2:53707275-53707294 None:intergenic 55.0%
AACCCGAGCTCACTGGTGTC+GGG - Chr2:53703263-53703282 MsG0280009526.01.T01:intron 60.0%
ATCCCCGACACCAGTGAGCT+CGG + Chr2:53703269-53703288 None:intergenic 60.0%
ATGCGGGAGCTCTTGTGCAC+CGG - Chr2:53702114-53702133 MsG0280009526.01.T01:CDS 60.0%
CAACCCGAGCTCACTGGTGT+CGG - Chr2:53703262-53703281 MsG0280009526.01.T01:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + Chr2:53702097-53702116 None:intergenic 60.0%
CCCTGATAGGCTGCATGCTC+CGG + Chr2:53700303-53700322 None:intergenic 60.0%
CCGGAGCATGCAGCCTATCA+GGG - Chr2:53700300-53700319 MsG0280009526.01.T01:intron 60.0%
CCTGATAGGCTGCATGCTCC+GGG + Chr2:53700302-53700321 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - Chr2:53702097-53702116 MsG0280009526.01.T01:CDS 60.0%
GAAGAAGCGGCCATTGGAGG+AGG + Chr2:53698611-53698630 None:intergenic 60.0%
GAGATCCCGTGGAGATCCCT+TGG - Chr2:53702447-53702466 MsG0280009526.01.T01:intron 60.0%
GATCCCGTGGAGATCCCTTG+GGG - Chr2:53702449-53702468 MsG0280009526.01.T01:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG + Chr2:53702098-53702117 None:intergenic 60.0%
GGCCCCAGCCCACATAGTAA+TGG - Chr2:53703711-53703730 MsG0280009526.01.T01:intron 60.0%
GTCGTAGGTGGAGAAGGGAC+GGG + Chr2:53698386-53698405 None:intergenic 60.0%
TCACCCCAAGGGATCTCCAC+GGG + Chr2:53702455-53702474 None:intergenic 60.0%
TCGTAGGTGGAGAAGGGACG+GGG + Chr2:53698385-53698404 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - Chr2:53702098-53702117 MsG0280009526.01.T01:CDS 60.0%
TTGGAGAGGGGGAAGAGGAG+CGG - Chr2:53703593-53703612 MsG0280009526.01.T01:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr2:53702082-53702101 MsG0280009526.01.T01:CDS 60.0%
! TTTGGGGCTTGGGGCCTTGA+GGG + Chr2:53703795-53703814 None:intergenic 60.0%
!!! TTTTGGGGCTTGGGGCCTTG+AGG + Chr2:53703796-53703815 None:intergenic 60.0%
CCCGGAGCATGCAGCCTATC+AGG - Chr2:53700299-53700318 MsG0280009526.01.T01:intron 65.0%
CGCATATGCAGGGTCCGGGA+AGG + Chr2:53702099-53702118 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr2:53702084-53702103 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + Chr2:53702103-53702122 None:intergenic 65.0%
GAAGCGGCCATTGGAGGAGG+AGG + Chr2:53698608-53698627 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + Chr2:53702104-53702123 None:intergenic 65.0%
TCCCCGACACCAGTGAGCTC+GGG + Chr2:53703268-53703287 None:intergenic 65.0%
TGCGGGAGCTCTTGTGCACC+GGG - Chr2:53702115-53702134 MsG0280009526.01.T01:CDS 65.0%
! ACCCGAGCTCACTGGTGTCG+GGG - Chr2:53703264-53703283 MsG0280009526.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 53698363 53707327 53698363 ID=MsG0280009526.01;Name=MsG0280009526.01
Chr2 mRNA 53698363 53707185 53698363 ID=MsG0280009526.01.T01;Parent=MsG0280009526.01;Name=MsG0280009526.01.T01;_AED=0.45;_eAED=0.45;_QI=91|1|0.91|1|0.81|0.83|12|0|344
Chr2 exon 53707124 53707185 53707124 ID=MsG0280009526.01.T01:exon:16308;Parent=MsG0280009526.01.T01
Chr2 exon 53707008 53707102 53707008 ID=MsG0280009526.01.T01:exon:16309;Parent=MsG0280009526.01.T01
Chr2 five_prime_UTR 53707124 53707185 53707124 ID=MsG0280009526.01.T01:five_prime_utr;Parent=MsG0280009526.01.T01
Chr2 five_prime_UTR 53707074 53707102 53707074 ID=MsG0280009526.01.T01:five_prime_utr;Parent=MsG0280009526.01.T01
Chr2 CDS 53707008 53707073 53707008 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53705513 53705607 53705513 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53705335 53705402 53705335 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53705208 53705246 53705208 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53704437 53704537 53704437 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53703379 53703491 53703379 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53703143 53703242 53703143 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53702885 53703031 53702885 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53702251 53702311 53702251 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53702037 53702134 53702037 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 CDS 53698363 53698509 53698363 ID=MsG0280009526.01.T01:cds;Parent=MsG0280009526.01.T01
Chr2 mRNA 53698363 53707327 53698363 ID=MsG0280009526.01.T02;Parent=MsG0280009526.01;Name=MsG0280009526.01.T02;_AED=0.44;_eAED=0.44;_QI=254|1|0.90|1|0.9|0.90|11|0|344
Chr2 exon 53707008 53707327 53707008 ID=MsG0280009526.01.T02:exon:16320;Parent=MsG0280009526.01.T02
Chr2 five_prime_UTR 53707074 53707327 53707074 ID=MsG0280009526.01.T02:five_prime_utr;Parent=MsG0280009526.01.T02
Chr2 CDS 53707008 53707073 53707008 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53705513 53705607 53705513 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53705335 53705402 53705335 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53705208 53705246 53705208 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53704437 53704537 53704437 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53703379 53703491 53703379 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53703143 53703242 53703143 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53702885 53703031 53702885 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53702251 53702311 53702251 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53702037 53702134 53702037 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Chr2 CDS 53698363 53698509 53698363 ID=MsG0280009526.01.T02:cds;Parent=MsG0280009526.01.T02
Gene Sequence

>MsG0280009526.01.T01

ATGGCCGCTTCTTCGATCCTCAGATCTGCCATCGTTTCTTCATCTTCTCCCACCGATCTCTTTCAGGTGCTTGGCAATGGCTCAAGTATTAGTTCAAAGTCCACGAGGTTGCAAAACAACATATTTGGAACTTCAATTCCATGTGATTCATTAGTCTTACAAAACTGCAATGCCCGGAGCATGCAGCCTATCAGGGCTACAGCAACGGAAATCCCTCTCCCTGTACAAAACTCAAGCAGCACTGGGAAGACAAGGGTTGGAATTAACGGTTTTGGAAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTCGCGGGATGATATTGATGTTGTTGCAATTAATGATCCTTTTATTGATGCTAAATATATGGCTTACATGTTCAAGTATGATTCCACTCATGGACCATTCAAGGGAGCTATTAAGGTTTTGGATGACACTACTTTGGAAATCAATGGGAAGCAGGTTAAAGTTGTGAGCAAAAGAGATCCCGTGGAGATCCCTTGGGGTGATTTTGGTGCTGACTATGTCATTGAGTCTTCAGGAGTTTTTACAACATTAGAGAAAGCGTCATCGCATTTGAAGGCTGGTGCCAAGAAAATCATAATATCAGCTCCATCTGCTGATGCACCTATGTTTGTGGTCGGAGTGAATGAGAAGACATACAACTCCAACATGGACATTGTTTCTAATGCAAGCTGTACAACAAATTGTCTTGCACCTCTTGCCAAGGTGGTTCACGAGGAGTTTGGTATCGTTGAAGGTTTGATGACAACCGTGCATGCAACAACAGCAACACAAAAGACTGTAGATGGTCCTTCAATGAAGGATTGGAGAGGGGGAAGAGGAGCGGCCCAAAATATAATTCCAAGTTCAACCGGTGCTGCAAAGGCTGTTGGCAAAGTCCTTCCTGAACTAAATGGAAAACTCACTGGAATGGCATTTCGTGTACCTACTGCTAATGTTTCTGTCGTGGACTTAACCTGCCGGCTTCAAAAGAATGCCTCCTATGAAGATGTCAAAGCAGCAATAAAGTAA

>MsG0280009526.01.T02

ATGGCCGCTTCTTCGATCCTCAGATCTGCCATCGTTTCTTCATCTTCTCCCACCGATCTCTTTCAGGTGCTTGGCAATGGCTCAAGTATTAGTTCAAAGTCCACGAGGTTGCAAAACAACATATTTGGAACTTCAATTCCATGTGATTCATTAGTCTTACAAAACTGCAATGCCCGGAGCATGCAGCCTATCAGGGCTACAGCAACGGAAATCCCTCTCCCTGTACAAAACTCAAGCAGCACTGGGAAGACAAGGGTTGGAATTAACGGTTTTGGAAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTCGCGGGATGATATTGATGTTGTTGCAATTAATGATCCTTTTATTGATGCTAAATATATGGCTTACATGTTCAAGTATGATTCCACTCATGGACCATTCAAGGGAGCTATTAAGGTTTTGGATGACACTACTTTGGAAATCAATGGGAAGCAGGTTAAAGTTGTGAGCAAAAGAGATCCCGTGGAGATCCCTTGGGGTGATTTTGGTGCTGACTATGTCATTGAGTCTTCAGGAGTTTTTACAACATTAGAGAAAGCGTCATCGCATTTGAAGGCTGGTGCCAAGAAAATCATAATATCAGCTCCATCTGCTGATGCACCTATGTTTGTGGTCGGAGTGAATGAGAAGACATACAACTCCAACATGGACATTGTTTCTAATGCAAGCTGTACAACAAATTGTCTTGCACCTCTTGCCAAGGTGGTTCACGAGGAGTTTGGTATCGTTGAAGGTTTGATGACAACCGTGCATGCAACAACAGCAACACAAAAGACTGTAGATGGTCCTTCAATGAAGGATTGGAGAGGGGGAAGAGGAGCGGCCCAAAATATAATTCCAAGTTCAACCGGTGCTGCAAAGGCTGTTGGCAAAGTCCTTCCTGAACTAAATGGAAAACTCACTGGAATGGCATTTCGTGTACCTACTGCTAATGTTTCTGTCGTGGACTTAACCTGCCGGCTTCAAAAGAATGCCTCCTATGAAGATGTCAAAGCAGCAATAAAGTAA

Protein sequence

>MsG0280009526.01.T01

MAASSILRSAIVSSSSPTDLFQVLGNGSSISSKSTRLQNNIFGTSIPCDSLVLQNCNARSMQPIRATATEIPLPVQNSSSTGKTRVGINGFGRIGRLVLRVATSRDDIDVVAINDPFIDAKYMAYMFKYDSTHGPFKGAIKVLDDTTLEINGKQVKVVSKRDPVEIPWGDFGADYVIESSGVFTTLEKASSHLKAGAKKIIISAPSADAPMFVVGVNEKTYNSNMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLQKNASYEDVKAAIK*

>MsG0280009526.01.T02

MAASSILRSAIVSSSSPTDLFQVLGNGSSISSKSTRLQNNIFGTSIPCDSLVLQNCNARSMQPIRATATEIPLPVQNSSSTGKTRVGINGFGRIGRLVLRVATSRDDIDVVAINDPFIDAKYMAYMFKYDSTHGPFKGAIKVLDDTTLEINGKQVKVVSKRDPVEIPWGDFGADYVIESSGVFTTLEKASSHLKAGAKKIIISAPSADAPMFVVGVNEKTYNSNMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLQKNASYEDVKAAIK*