AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034733.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034733.01.T01 MTR_6g073110 59.934 302 94 3 1 275 17 318 1.49e-123 355
MsG0680034733.01.T01 MTR_4g072320 53.770 305 108 5 1 278 17 315 2.64e-107 314
MsG0680034733.01.T01 MTR_4g072350 52.632 304 117 4 1 277 17 320 1.07e-106 312
MsG0680034733.01.T01 MTR_4g072360 52.303 304 118 3 1 277 17 320 1.83e-105 309
MsG0680034733.01.T01 MTR_0374s0050 48.684 304 121 4 1 277 20 315 1.01e-90 271
MsG0680034733.01.T01 MTR_3g083130 45.574 305 128 8 1 277 21 315 3.28e-74 229
MsG0680034733.01.T01 MTR_4g036845 40.260 308 148 8 1 278 14 315 3.89e-67 211
MsG0680034733.01.T01 MTR_5g097900 43.564 303 132 8 1 275 20 311 8.19e-65 205
MsG0680034733.01.T01 MTR_5g097910 44.643 280 125 6 1 253 20 296 1.28e-64 205
MsG0680034733.01.T01 MTR_5g097940 44.643 280 125 6 1 253 20 296 1.28e-64 205
MsG0680034733.01.T01 MTR_8g070115 39.493 276 138 7 30 278 42 315 2.49e-59 191
MsG0680034733.01.T01 MTR_8g070095 37.979 287 143 8 23 278 37 319 1.27e-58 190
MsG0680034733.01.T01 MTR_7g063580 39.493 276 135 9 31 278 83 354 1.05e-52 176
MsG0680034733.01.T01 MTR_4g021450 39.286 280 136 7 22 277 35 304 1.66e-50 168
MsG0680034733.01.T01 MTR_4g021350 38.246 285 141 10 23 278 35 313 4.41e-50 167
MsG0680034733.01.T01 MTR_4g021410 38.710 279 137 7 23 277 36 304 5.02e-48 162
MsG0680034733.01.T01 MTR_4g021410 39.273 275 133 7 27 277 3 267 7.16e-48 160
MsG0680034733.01.T01 MTR_4g021350 38.039 255 130 7 23 252 35 286 7.98e-45 153
MsG0680034733.01.T01 MTR_7g070500 34.752 282 156 7 22 277 41 320 1.48e-43 150
MsG0680034733.01.T01 MTR_4g021450 41.500 200 103 5 83 277 38 228 5.49e-42 144
MsG0680034733.01.T01 MTR_4g021450 41.667 180 96 4 103 277 10 185 3.00e-39 135
MsG0680034733.01.T01 MTR_4g021410 41.000 200 104 5 83 277 38 228 3.34e-39 137
MsG0680034733.01.T01 MTR_6g072650 50.345 145 54 3 133 277 10 136 5.04e-39 133
MsG0680034733.01.T01 MTR_7g070500 33.730 252 142 5 22 250 41 290 2.78e-36 131
MsG0680034733.01.T01 MTR_4g072060 34.266 286 149 9 1 251 11 292 2.02e-33 124
MsG0680034733.01.T01 MTR_6g072710 52.679 112 45 2 151 256 1 110 6.52e-31 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034733.01.T01 AT1G59960 41.830 306 150 4 1 278 21 326 1.54e-78 241
MsG0680034733.01.T01 AT1G59950 40.909 308 150 6 1 278 15 320 4.52e-71 222
MsG0680034733.01.T01 AT2G37790 42.349 281 136 5 23 278 35 314 5.51e-69 216
MsG0680034733.01.T01 AT5G62420 40.909 308 147 9 1 278 14 316 3.84e-68 214
MsG0680034733.01.T01 AT2G37770 40.070 287 135 8 23 278 35 315 1.60e-63 202
MsG0680034733.01.T01 AT3G53880 39.711 277 140 6 28 278 40 315 6.43e-62 198
MsG0680034733.01.T01 AT2G37760 37.540 309 149 8 1 278 16 311 5.30e-61 196
MsG0680034733.01.T01 AT2G37760 37.540 309 149 8 1 278 16 311 5.30e-61 196
MsG0680034733.01.T01 AT3G53880 37.643 263 135 6 28 262 40 301 2.20e-53 176
MsG0680034733.01.T01 AT2G37760 36.364 286 139 7 1 256 16 288 1.81e-52 173
MsG0680034733.01.T01 AT2G37760 36.042 283 138 7 1 253 16 285 1.28e-51 171
MsG0680034733.01.T01 AT2G37760 36.042 283 138 7 1 253 16 285 1.28e-51 171
MsG0680034733.01.T01 AT2G37760 38.710 248 125 6 57 278 19 265 8.04e-50 165
MsG0680034733.01.T01 AT2G37760 38.710 248 125 6 57 278 19 265 8.04e-50 165
MsG0680034733.01.T01 AT5G01670 34.752 282 156 6 22 277 42 321 4.33e-48 162
MsG0680034733.01.T01 AT2G21250 34.965 286 147 8 1 251 11 292 6.45e-45 154
MsG0680034733.01.T01 AT2G21260 34.615 286 148 9 1 251 11 292 8.15e-45 154
MsG0680034733.01.T01 AT5G01670 31.715 309 156 6 22 277 42 348 6.28e-44 152
MsG0680034733.01.T01 AT2G37770 42.529 174 74 4 22 172 34 204 1.20e-40 142
MsG0680034733.01.T01 AT2G21250 37.004 227 108 7 1 196 11 233 1.70e-37 133
MsG0680034733.01.T01 AT2G21260 34.343 198 112 6 72 251 27 224 2.72e-29 111

Find 78 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTGGTGTGAGCAATTT+TGG 0.128778 6:-93595961 MsG0680034733.01.T01:CDS
ATTGCAATTTCAATCAAATT+TGG 0.182871 6:+93594587 None:intergenic
AAAATCTTCAGATATTTAAT+TGG 0.200969 6:-93594763 MsG0680034733.01.T01:CDS
GTTTCAATCTCACTGGAAAA+TGG 0.223686 6:+93596076 None:intergenic
ACAAAACCTTGGAAGATCTT+TGG 0.245147 6:-93594649 MsG0680034733.01.T01:CDS
ACTCCTTTGGCCTCGTTTCC+AGG 0.247312 6:+93596054 None:intergenic
TGGGAGCTAATGGTGCTTCA+TGG 0.271882 6:-93595539 MsG0680034733.01.T01:CDS
CAAAACCTTGGAAGATCTTT+GGG 0.277871 6:-93594648 MsG0680034733.01.T01:CDS
TCTCATAACTGCTTATAAAA+AGG 0.278612 6:+93594518 None:intergenic
ATGGGGTACCCTTGCTGTTA+TGG 0.280682 6:-93595520 MsG0680034733.01.T01:CDS
TATGGAGAGTCCAATCTTAA+AGG 0.312301 6:-93595502 MsG0680034733.01.T01:CDS
GATTGCATTGAGATGGATAT+TGG 0.324308 6:-93594836 MsG0680034733.01.T01:CDS
ACAATGCCTATGCTTTCTTT+TGG 0.329499 6:-93596655 MsG0680034733.01.T01:CDS
ATTGCAATATCCTTTAAGAT+TGG 0.356246 6:+93595492 None:intergenic
TATTCCACCGGCTGTTAATC+AGG 0.364210 6:-93595902 MsG0680034733.01.T01:intron
AAGGATATTGCAATTTCAAC+AGG 0.378866 6:-93595483 MsG0680034733.01.T01:CDS
GGGAGCTAATGGTGCTTCAT+GGG 0.382705 6:-93595538 MsG0680034733.01.T01:CDS
CATGAGTGCATGGTCCCCTT+TGG 0.389739 6:-93595559 MsG0680034733.01.T01:CDS
CGAAATGACGGTAGCCGACT+TGG 0.406767 6:+93596572 None:intergenic
TGGTCCCCTTTGGGAGCTAA+TGG 0.408524 6:-93595549 MsG0680034733.01.T01:CDS
TTCGACACTGCAGCTATGTA+TGG 0.413597 6:-93596553 MsG0680034733.01.T01:CDS
AAATCTTCAGATATTTAATT+GGG 0.414526 6:-93594762 MsG0680034733.01.T01:CDS
AAAAGGAAGCACAACTCCTT+TGG 0.418200 6:+93596041 None:intergenic
TTAGGCTTAACCAAGTCTAT+TGG 0.420233 6:-93595976 MsG0680034733.01.T01:CDS
ATGAGTGCATGGTCCCCTTT+GGG 0.421394 6:-93595558 MsG0680034733.01.T01:CDS
TCATGTGTATTCCTTTCTCT+TGG 0.423638 6:+93595577 None:intergenic
ACAGGTATGAATTCTTCATT+TGG 0.423655 6:+93596610 None:intergenic
ATCAGTACACCACAGTTTAG+TGG 0.439954 6:+93596450 None:intergenic
ATCTCACTGGAAAATGGATT+AGG 0.448343 6:+93596082 None:intergenic
GGAATTTGTACAAAATGCCT+TGG 0.449361 6:+93594608 None:intergenic
ATGGAAGAGTGCTCTAAGTT+AGG 0.456616 6:-93595994 MsG0680034733.01.T01:CDS
GCACTCTTCCATGGCTTCCC+AGG 0.465475 6:+93596005 None:intergenic
TTTCCAGGTTTCAATCTCAC+TGG 0.473028 6:+93596069 None:intergenic
AGAAAATTCTGCCAAGAGAA+AGG 0.474524 6:-93595588 MsG0680034733.01.T01:CDS
AAGCAAATACCACAGATAAG+AGG 0.494105 6:-93594710 MsG0680034733.01.T01:CDS
TATGGTTCTGAGGAGGCCCT+TGG 0.496023 6:-93596535 MsG0680034733.01.T01:CDS
AGAGAATTTGTATCTGAAGA+TGG 0.510491 6:-93594677 MsG0680034733.01.T01:CDS
AGATGGACCTTACAAAACCT+TGG 0.527809 6:-93594660 MsG0680034733.01.T01:CDS
GTATGAATTCTTCATTTGGT+AGG 0.530103 6:+93596614 None:intergenic
AAAAGGGACCTGGGAAGCCA+TGG 0.531952 6:-93596013 MsG0680034733.01.T01:CDS
AAGCACCATTAGCTCCCAAA+GGG 0.533197 6:+93595544 None:intergenic
TAACTTAGAGCACTCTTCCA+TGG 0.535220 6:+93595996 None:intergenic
TGGATGGCAGCAGTCAAGAC+AGG 0.563616 6:+93596592 None:intergenic
GGAGCTAATGGTGCTTCATG+GGG 0.564543 6:-93595537 MsG0680034733.01.T01:CDS
TGCAGCTATGTATGGTTCTG+AGG 0.568339 6:-93596545 MsG0680034733.01.T01:CDS
TATGGTAGATTGCATTGAGA+TGG 0.569249 6:-93594843 MsG0680034733.01.T01:intron
CTTGTTGAAGCTCTTCACAC+TGG 0.570023 6:+93594799 None:intergenic
ACCATCCCAAAGATCTTCCA+AGG 0.572856 6:+93594643 None:intergenic
ACAAAATGCTACTATTCCAC+CGG 0.576927 6:-93595914 MsG0680034733.01.T01:CDS
ATTGCTCACACCAATAGACT+TGG 0.583541 6:+93595966 None:intergenic
ATTTCTACCTGATTAACAGC+CGG 0.583803 6:+93595895 None:intergenic
ATGACGGTAGCCGACTTGGA+TGG 0.589071 6:+93596576 None:intergenic
ACCTTGGAAGATCTTTGGGA+TGG 0.591940 6:-93594644 MsG0680034733.01.T01:CDS
GAGGTTGGGACTTCAATATG+TGG 0.602023 6:-93596112 MsG0680034733.01.T01:CDS
AAGGAATACACATGAGTGCA+TGG 0.603204 6:-93595569 MsG0680034733.01.T01:CDS
TTTCCAGTGAGATTGAAACC+TGG 0.603382 6:-93596072 MsG0680034733.01.T01:CDS
TGGTAGGAGAACCGCTGCTG+AGG 0.619062 6:+93596630 None:intergenic
AGCTATGTATGGTTCTGAGG+AGG 0.622048 6:-93596542 MsG0680034733.01.T01:CDS
AGGTTGAAATGAATGTAGCA+TGG 0.623219 6:-93595626 MsG0680034733.01.T01:CDS
AAACCTGGAAACGAGGCCAA+AGG 0.624576 6:-93596057 MsG0680034733.01.T01:CDS
TAGCTGCAGTGTCGAAATGA+CGG 0.624617 6:+93596560 None:intergenic
GAGGTTCCAAAAGAAAGCAT+AGG 0.626559 6:+93596649 None:intergenic
TCTACCTGATTAACAGCCGG+TGG 0.629225 6:+93595898 None:intergenic
CAGTGTGAAGAGCTTCAACA+AGG 0.632107 6:-93594798 MsG0680034733.01.T01:CDS
ATGAATGTAGCATGGCAGCA+AGG 0.636069 6:-93595618 MsG0680034733.01.T01:CDS
GAGATTGAAACCTGGAAACG+AGG 0.639948 6:-93596064 MsG0680034733.01.T01:CDS
ACTAAGCAGCCTCTTATCTG+TGG 0.642219 6:+93594701 None:intergenic
CTTCTGCTATAGCTAGACCA+AGG 0.646343 6:+93596518 None:intergenic
TTGACTGCTGCCATCCAAGT+CGG 0.647898 6:-93596586 MsG0680034733.01.T01:CDS
GAAGCACCATTAGCTCCCAA+AGG 0.648653 6:+93595543 None:intergenic
TTGGACTCTCCATAACAGCA+AGG 0.652851 6:+93595511 None:intergenic
ATGGTGAGCTATGATTTCCA+AGG 0.659203 6:-93594625 MsG0680034733.01.T01:exon
TGGACTCTCCATAACAGCAA+GGG 0.663279 6:+93595512 None:intergenic
TTCTGCTATAGCTAGACCAA+GGG 0.671791 6:+93596519 None:intergenic
ATAGCAGAAGCACAAAACCA+AGG 0.686659 6:-93596505 MsG0680034733.01.T01:CDS
TGGTAATGAAAATATCGTCG+CGG 0.711220 6:+93596470 None:intergenic
AGCACCATTAGCTCCCAAAG+GGG 0.726144 6:+93595545 None:intergenic
TTGAGATGGATATTGGAACA+AGG 0.740605 6:-93594829 MsG0680034733.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAAATATCTAAATATTT+AGG + Chr6:93595307-93595326 None:intergenic 10.0%
!! AAAATCTTCAGATATTTAAT+TGG - Chr6:93596391-93596410 MsG0680034733.01.T01:intron 15.0%
!! AAATCTTCAGATATTTAATT+GGG - Chr6:93596392-93596411 MsG0680034733.01.T01:intron 15.0%
!! TTTAAGCCAAAATTTAATAA+CGG - Chr6:93595350-93595369 MsG0680034733.01.T01:intron 15.0%
!!! TATAAAAGTGTTATATGTTT+TGG + Chr6:93596131-93596150 None:intergenic 15.0%
!! AGTAGTTATAATCAATATTG+AGG + Chr6:93594876-93594895 None:intergenic 20.0%
!! ATTATTAGAGTCTAAATGTT+TGG + Chr6:93596107-93596126 None:intergenic 20.0%
!! ATTGCAATTTCAATCAAATT+TGG + Chr6:93596570-93596589 None:intergenic 20.0%
!!! ATAAGACCGTTATTAAATTT+TGG + Chr6:93595359-93595378 None:intergenic 20.0%
!!! ATTCGTATTTGAAAATTTTC+AGG - Chr6:93595508-93595527 MsG0680034733.01.T01:CDS 20.0%
!!! ATTTTTTCTTTGGAATTTCT+TGG - Chr6:93595714-93595733 MsG0680034733.01.T01:intron 20.0%
!!! TAATAACGGTCTTATAAAAT+GGG - Chr6:93595364-93595383 MsG0680034733.01.T01:intron 20.0%
!!! TCAATATTGATTATAACTAC+TGG - Chr6:93594875-93594894 MsG0680034733.01.T01:intron 20.0%
!!! TTAATAACGGTCTTATAAAA+TGG - Chr6:93595363-93595382 MsG0680034733.01.T01:intron 20.0%
!!! TTGCTCTTTAACATTTTATA+AGG - Chr6:93595020-93595039 MsG0680034733.01.T01:intron 20.0%
! AATATTGAGGTATGATTGAT+TGG + Chr6:93594863-93594882 None:intergenic 25.0%
! ACTAACTATTAATGTTGGTA+TGG - Chr6:93596293-93596312 MsG0680034733.01.T01:intron 25.0%
! AGACGTCATATATTTAGAAA+CGG - Chr6:93595403-93595422 MsG0680034733.01.T01:intron 25.0%
! ATCTAAATATTTAGGGATGA+AGG + Chr6:93595299-93595318 None:intergenic 25.0%
! CCAACATTAATAGTTAGTAT+AGG + Chr6:93596291-93596310 None:intergenic 25.0%
! CCTATACTAACTATTAATGT+TGG - Chr6:93596288-93596307 MsG0680034733.01.T01:intron 25.0%
! GAATTAGATCCATATAACAA+AGG + Chr6:93594821-93594840 None:intergenic 25.0%
! GTGTTGAATTCATAGTAAAA+AGG - Chr6:93596244-93596263 MsG0680034733.01.T01:intron 25.0%
! TAACTGCTTATAAAAAGGAA+TGG + Chr6:93596634-93596653 None:intergenic 25.0%
! TACGTTCGATATAAATATTC+AGG + Chr6:93595837-93595856 None:intergenic 25.0%
! TACTTTAATGATGAAGAGAT+TGG - Chr6:93595483-93595502 MsG0680034733.01.T01:CDS 25.0%
! TCTCATAACTGCTTATAAAA+AGG + Chr6:93596639-93596658 None:intergenic 25.0%
! TTCTTTCTTCCAATTGAATT+TGG - Chr6:93596167-93596186 MsG0680034733.01.T01:intron 25.0%
!! CTCTTTAACATTTTATAAGG+AGG - Chr6:93595023-93595042 MsG0680034733.01.T01:intron 25.0%
!! TAACATTTTATAAGGAGGTT+GGG - Chr6:93595028-93595047 MsG0680034733.01.T01:intron 25.0%
!! TTAACATTTTATAAGGAGGT+TGG - Chr6:93595027-93595046 MsG0680034733.01.T01:intron 25.0%
!! TTTCTTTTGCCAAATTCAAT+TGG + Chr6:93596179-93596198 None:intergenic 25.0%
!!! ATTGCAATATCCTTTAAGAT+TGG + Chr6:93595665-93595684 None:intergenic 25.0%
!!! TTTTGGCTTAAATATGCAAA+TGG + Chr6:93595342-93595361 None:intergenic 25.0%
AAGGATATTGCAATTTCAAC+AGG - Chr6:93595671-93595690 MsG0680034733.01.T01:intron 30.0%
ACAGGTATGAATTCTTCATT+TGG + Chr6:93594547-93594566 None:intergenic 30.0%
ACCTTCAAACTTATTTGGTT+AGG + Chr6:93595750-93595769 None:intergenic 30.0%
AGAGAATTTGTATCTGAAGA+TGG - Chr6:93596477-93596496 MsG0680034733.01.T01:CDS 30.0%
ATTTGCAGAATCAATCGATA+AGG + Chr6:93595998-93596017 None:intergenic 30.0%
CATGTGCATGAATTTATAAG+TGG - Chr6:93595960-93595979 MsG0680034733.01.T01:CDS 30.0%
GAACAAAGAAAACCAAATTC+TGG + Chr6:93595774-93595793 None:intergenic 30.0%
GATTTCAAAATGACTAACAG+TGG + Chr6:93596212-93596231 None:intergenic 30.0%
GTATGAATTCTTCATTTGGT+AGG + Chr6:93594543-93594562 None:intergenic 30.0%
TAGAGTCTAAATGTTTGGAT+TGG + Chr6:93596102-93596121 None:intergenic 30.0%
TCCTAACCAAATAAGTTTGA+AGG - Chr6:93595746-93595765 MsG0680034733.01.T01:intron 30.0%
! AAATGGGTCGATAACTTTTT+CGG - Chr6:93595380-93595399 MsG0680034733.01.T01:intron 30.0%
! TGCTTCCTTTTGACATAAAA+GGG - Chr6:93595125-93595144 MsG0680034733.01.T01:intron 30.0%
! TTTTCATTACCACTAAACTG+TGG - Chr6:93594695-93594714 MsG0680034733.01.T01:CDS 30.0%
AAGCAAATACCACAGATAAG+AGG - Chr6:93596444-93596463 MsG0680034733.01.T01:intron 35.0%
ACAAAACCTTGGAAGATCTT+TGG - Chr6:93596505-93596524 MsG0680034733.01.T01:CDS 35.0%
ACAAAATGCTACTATTCCAC+CGG - Chr6:93595240-93595259 MsG0680034733.01.T01:intron 35.0%
ACAGAACTCGATATCTAAGT+TGG + Chr6:93596031-93596050 None:intergenic 35.0%
AGAAAATTCTGCCAAGAGAA+AGG - Chr6:93595566-93595585 MsG0680034733.01.T01:CDS 35.0%
AGGTTGAAATGAATGTAGCA+TGG - Chr6:93595528-93595547 MsG0680034733.01.T01:CDS 35.0%
ATTTCTACCTGATTAACAGC+CGG + Chr6:93595262-93595281 None:intergenic 35.0%
CAAAACCTTGGAAGATCTTT+GGG - Chr6:93596506-93596525 MsG0680034733.01.T01:CDS 35.0%
CCAAAGAAAAAATTCACCTG+TGG + Chr6:93595707-93595726 None:intergenic 35.0%
CTGCTTATAAAAAGGAATGG+AGG + Chr6:93596631-93596650 None:intergenic 35.0%
CTGGTACCTTCAAACTTATT+TGG + Chr6:93595755-93595774 None:intergenic 35.0%
GATTGCATTGAGATGGATAT+TGG - Chr6:93596318-93596337 MsG0680034733.01.T01:intron 35.0%
GGAATTTGTACAAAATGCCT+TGG + Chr6:93596549-93596568 None:intergenic 35.0%
GTGCATGAATTTATAAGTGG+AGG - Chr6:93595963-93595982 MsG0680034733.01.T01:CDS 35.0%
GTTTCAATCTCACTGGAAAA+TGG + Chr6:93595081-93595100 None:intergenic 35.0%
TATGGAGAGTCCAATCTTAA+AGG - Chr6:93595652-93595671 MsG0680034733.01.T01:intron 35.0%
TATGGTAGATTGCATTGAGA+TGG - Chr6:93596311-93596330 MsG0680034733.01.T01:intron 35.0%
TCATGTGTATTCCTTTCTCT+TGG + Chr6:93595580-93595599 None:intergenic 35.0%
TTAGGCTTAACCAAGTCTAT+TGG - Chr6:93595178-93595197 MsG0680034733.01.T01:intron 35.0%
TTGAGATGGATATTGGAACA+AGG - Chr6:93596325-93596344 MsG0680034733.01.T01:intron 35.0%
! ATCTCACTGGAAAATGGATT+AGG + Chr6:93595075-93595094 None:intergenic 35.0%
! GAACATCTGCCTTTGTTATA+TGG - Chr6:93594809-93594828 MsG0680034733.01.T01:CDS 35.0%
! GTGCTTCCTTTTGACATAAA+AGG - Chr6:93595124-93595143 MsG0680034733.01.T01:intron 35.0%
! TCTATTGGTGTGAGCAATTT+TGG - Chr6:93595193-93595212 MsG0680034733.01.T01:intron 35.0%
! TGATTGATTGGCTATACTGA+CGG + Chr6:93594851-93594870 None:intergenic 35.0%
! TGGTAATGAAAATATCGTCG+CGG + Chr6:93594687-93594706 None:intergenic 35.0%
! TTTTGACATAAAAGGGACCT+GGG - Chr6:93595132-93595151 MsG0680034733.01.T01:intron 35.0%
!! AGATCTTCCAAGGTTTTGTA+AGG + Chr6:93596504-93596523 None:intergenic 35.0%
!! AGTTTGAAGGTACCAGAATT+TGG - Chr6:93595759-93595778 MsG0680034733.01.T01:intron 35.0%
!! CCTTATAAAACTGACTTGCA+AGG + Chr6:93596068-93596087 None:intergenic 35.0%
!! CCTTGCAAGTCAGTTTTATA+AGG - Chr6:93596065-93596084 MsG0680034733.01.T01:CDS 35.0%
!! TAAAACTGACTTGCAAGGTA+AGG + Chr6:93596063-93596082 None:intergenic 35.0%
!!! CCACAGGTGAATTTTTTCTT+TGG - Chr6:93595704-93595723 MsG0680034733.01.T01:intron 35.0%
AAGGAATACACATGAGTGCA+TGG - Chr6:93595585-93595604 MsG0680034733.01.T01:CDS 40.0%
AGATGGACCTTACAAAACCT+TGG - Chr6:93596494-93596513 MsG0680034733.01.T01:CDS 40.0%
ATAGGACTTGAAGAGTGACA+TGG + Chr6:93596273-93596292 None:intergenic 40.0%
ATCAGTACACCACAGTTTAG+TGG + Chr6:93594707-93594726 None:intergenic 40.0%
ATGGTGAGCTATGATTTCCA+AGG - Chr6:93596529-93596548 MsG0680034733.01.T01:CDS 40.0%
ATTACTGCAGTGAGTTCTTG+CGG + Chr6:93594752-93594771 None:intergenic 40.0%
ATTGCTCACACCAATAGACT+TGG + Chr6:93595191-93595210 None:intergenic 40.0%
CAGAATCAATCGATAAGGTG+GGG + Chr6:93595993-93596012 None:intergenic 40.0%
GCAGAATCAATCGATAAGGT+GGG + Chr6:93595994-93596013 None:intergenic 40.0%
TGCAGAATCAATCGATAAGG+TGG + Chr6:93595995-93596014 None:intergenic 40.0%
TTCTGCTATAGCTAGACCAA+GGG + Chr6:93594638-93594657 None:intergenic 40.0%
TTTCCAGGTTTCAATCTCAC+TGG + Chr6:93595088-93595107 None:intergenic 40.0%
TTTCCAGTGAGATTGAAACC+TGG - Chr6:93595082-93595101 MsG0680034733.01.T01:intron 40.0%
! AAAAGGAAGCACAACTCCTT+TGG + Chr6:93595116-93595135 None:intergenic 40.0%
! ATAGCAGAAGCACAAAACCA+AGG - Chr6:93594649-93594668 MsG0680034733.01.T01:CDS 40.0%
! CAGGTCCCTTTTATGTCAAA+AGG + Chr6:93595133-93595152 None:intergenic 40.0%
! CGCGGTTTTTAATAAGACCT+TGG + Chr6:93594669-93594688 None:intergenic 40.0%
! CTTTTGACATAAAAGGGACC+TGG - Chr6:93595131-93595150 MsG0680034733.01.T01:intron 40.0%
! GAGGTTCCAAAAGAAAGCAT+AGG + Chr6:93594508-93594527 None:intergenic 40.0%
! TAACTTAGAGCACTCTTCCA+TGG + Chr6:93595161-93595180 None:intergenic 40.0%
!! ATGGAAGAGTGCTCTAAGTT+AGG - Chr6:93595160-93595179 MsG0680034733.01.T01:intron 40.0%
AAGCACCATTAGCTCCCAAA+GGG + Chr6:93595613-93595632 None:intergenic 45.0%
ACCATCCCAAAGATCTTCCA+AGG + Chr6:93596514-93596533 None:intergenic 45.0%
ACTAAGCAGCCTCTTATCTG+TGG + Chr6:93596456-93596475 None:intergenic 45.0%
ATGAATGTAGCATGGCAGCA+AGG - Chr6:93595536-93595555 MsG0680034733.01.T01:CDS 45.0%
CAGTGTGAAGAGCTTCAACA+AGG - Chr6:93596356-93596375 MsG0680034733.01.T01:intron 45.0%
CTTCTGCTATAGCTAGACCA+AGG + Chr6:93594639-93594658 None:intergenic 45.0%
CTTGTTGAAGCTCTTCACAC+TGG + Chr6:93596358-93596377 None:intergenic 45.0%
GAGATTGAAACCTGGAAACG+AGG - Chr6:93595090-93595109 MsG0680034733.01.T01:intron 45.0%
GAGGTTGGGACTTCAATATG+TGG - Chr6:93595042-93595061 MsG0680034733.01.T01:intron 45.0%
TGGACTCTCCATAACAGCAA+GGG + Chr6:93595645-93595664 None:intergenic 45.0%
TGGCTATACTGACGGTGTAT+TGG + Chr6:93594843-93594862 None:intergenic 45.0%
TTACTGCAGTGAGTTCTTGC+GGG + Chr6:93594751-93594770 None:intergenic 45.0%
TTCGACACTGCAGCTATGTA+TGG - Chr6:93594601-93594620 MsG0680034733.01.T01:three_prime_UTR 45.0%
TTGGACTCTCCATAACAGCA+AGG + Chr6:93595646-93595665 None:intergenic 45.0%
! ACCTTGGAAGATCTTTGGGA+TGG - Chr6:93596510-93596529 MsG0680034733.01.T01:CDS 45.0%
! TAGCTGCAGTGTCGAAATGA+CGG + Chr6:93594597-93594616 None:intergenic 45.0%
! TATTCCACCGGCTGTTAATC+AGG - Chr6:93595252-93595271 MsG0680034733.01.T01:intron 45.0%
! TGCAGCTATGTATGGTTCTG+AGG - Chr6:93594609-93594628 MsG0680034733.01.T01:three_prime_UTR 45.0%
!! AGCTATGTATGGTTCTGAGG+AGG - Chr6:93594612-93594631 MsG0680034733.01.T01:three_prime_UTR 45.0%
!!! TTCTTTTGGAACCTCAGCAG+CGG - Chr6:93594513-93594532 MsG0680034733.01.T01:three_prime_UTR 45.0%
!! TAAAAATATCTAAATATTTA+GGG + Chr6:93595306-93595325 None:intergenic 5.0%
AAACCTGGAAACGAGGCCAA+AGG - Chr6:93595097-93595116 MsG0680034733.01.T01:intron 50.0%
AGCACCATTAGCTCCCAAAG+GGG + Chr6:93595612-93595631 None:intergenic 50.0%
ATGAGTGCATGGTCCCCTTT+GGG - Chr6:93595596-93595615 MsG0680034733.01.T01:CDS 50.0%
GGAGCTAATGGTGCTTCATG+GGG - Chr6:93595617-93595636 MsG0680034733.01.T01:CDS 50.0%
GGGAGCTAATGGTGCTTCAT+GGG - Chr6:93595616-93595635 MsG0680034733.01.T01:CDS 50.0%
TACTGCAGTGAGTTCTTGCG+GGG + Chr6:93594750-93594769 None:intergenic 50.0%
TCTACCTGATTAACAGCCGG+TGG + Chr6:93595259-93595278 None:intergenic 50.0%
TGGGAGCTAATGGTGCTTCA+TGG - Chr6:93595615-93595634 MsG0680034733.01.T01:CDS 50.0%
TTGACTGCTGCCATCCAAGT+CGG - Chr6:93594568-93594587 MsG0680034733.01.T01:three_prime_UTR 50.0%
! GAAGCACCATTAGCTCCCAA+AGG + Chr6:93595614-93595633 None:intergenic 50.0%
!! ATGGGGTACCCTTGCTGTTA+TGG - Chr6:93595634-93595653 MsG0680034733.01.T01:intron 50.0%
AAAAGGGACCTGGGAAGCCA+TGG - Chr6:93595141-93595160 MsG0680034733.01.T01:intron 55.0%
AACAGGACAGAGTGTGCCAC+AGG - Chr6:93595688-93595707 MsG0680034733.01.T01:intron 55.0%
ACTCCTTTGGCCTCGTTTCC+AGG + Chr6:93595103-93595122 None:intergenic 55.0%
CATGAGTGCATGGTCCCCTT+TGG - Chr6:93595595-93595614 MsG0680034733.01.T01:CDS 55.0%
CGAAATGACGGTAGCCGACT+TGG + Chr6:93594585-93594604 None:intergenic 55.0%
TGGATGGCAGCAGTCAAGAC+AGG + Chr6:93594565-93594584 None:intergenic 55.0%
! TGGTCCCCTTTGGGAGCTAA+TGG - Chr6:93595605-93595624 MsG0680034733.01.T01:CDS 55.0%
!! ATGACGGTAGCCGACTTGGA+TGG + Chr6:93594581-93594600 None:intergenic 55.0%
!! TATGGTTCTGAGGAGGCCCT+TGG - Chr6:93594619-93594638 MsG0680034733.01.T01:exon 55.0%
GAGTTCTTGCGGGGAGGACA+AGG + Chr6:93594741-93594760 None:intergenic 60.0%
GCACTCTTCCATGGCTTCCC+AGG + Chr6:93595152-93595171 None:intergenic 60.0%
TGCAGTGAGTTCTTGCGGGG+AGG + Chr6:93594747-93594766 None:intergenic 60.0%
TGGTAGGAGAACCGCTGCTG+AGG + Chr6:93594527-93594546 None:intergenic 60.0%
CTTGCGGGGAGGACAAGGTC+AGG + Chr6:93594736-93594755 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 93594502 93596674 93594502 ID=MsG0680034733.01;Name=MsG0680034733.01
Chr6 mRNA 93594502 93596674 93594502 ID=MsG0680034733.01.T01;Parent=MsG0680034733.01;Name=MsG0680034733.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.33|0.5|1|0.66|0.75|4|132|278
Chr6 exon 93594502 93594857 93594502 ID=MsG0680034733.01.T01:exon:5783;Parent=MsG0680034733.01.T01
Chr6 exon 93595478 93595646 93595478 ID=MsG0680034733.01.T01:exon:5782;Parent=MsG0680034733.01.T01
Chr6 exon 93595903 93596134 93595903 ID=MsG0680034733.01.T01:exon:5781;Parent=MsG0680034733.01.T01
Chr6 exon 93596463 93596674 93596463 ID=MsG0680034733.01.T01:exon:5780;Parent=MsG0680034733.01.T01
Chr6 CDS 93596463 93596674 93596463 ID=MsG0680034733.01.T01:cds;Parent=MsG0680034733.01.T01
Chr6 CDS 93595903 93596134 93595903 ID=MsG0680034733.01.T01:cds;Parent=MsG0680034733.01.T01
Chr6 CDS 93595478 93595646 93595478 ID=MsG0680034733.01.T01:cds;Parent=MsG0680034733.01.T01
Chr6 CDS 93594634 93594857 93594634 ID=MsG0680034733.01.T01:cds;Parent=MsG0680034733.01.T01
Chr6 three_prime_UTR 93594502 93594633 93594502 ID=MsG0680034733.01.T01:three_prime_utr;Parent=MsG0680034733.01.T01
Gene Sequence

>MsG0680034733.01.T01

ATGCCTATGCTTTCTTTTGGAACCTCAGCAGCGGTTCTCCTACCAAATGAAGAATTCATACCTGTCTTGACTGCTGCCATCCAAGTCGGCTACCGTCATTTCGACACTGCAGCTATGTATGGTTCTGAGGAGGCCCTTGGTCTAGCTATAGCAGAAGCACAAAACCAAGGTCTTATTAAAAACCGCGACGATATTTTCATTACCACTAAACTGAGGTTGGGACTTCAATATGTGGATCTTTACCTAATCCATTTTCCAGTGAGATTGAAACCTGGAAACGAGGCCAAAGGAGTTGTGCTTCCTTTTGACATAAAAGGGACCTGGGAAGCCATGGAAGAGTGCTCTAAGTTAGGCTTAACCAAGTCTATTGGTGTGAGCAATTTTGGAGCAAAAAAGCTTTCTGAACTTCTACAAAATGCTACTATTCCACCGGCTGTTAATCAGGTTGAAATGAATGTAGCATGGCAGCAAGGAAATCTGAGAAAATTCTGCCAAGAGAAAGGAATACACATGAGTGCATGGTCCCCTTTGGGAGCTAATGGTGCTTCATGGGGTACCCTTGCTGTTATGGAGAGTCCAATCTTAAAGGATATTGCAATTTCAACAGGACAGAATTGCATTGAGATGGATATTGGAACAAGGTGTCACTCCAGTGTGAAGAGCTTCAACAAGGTAAGAATGACAGAAAATCTTCAGATATTTAATTGGGAGCTTAGTGCAGATGATTTGATGAAGATTAAGCAAATACCACAGATAAGAGGCTGCTTAGTAAGAGAATTTGTATCTGAAGATGGACCTTACAAAACCTTGGAAGATCTTTGGGATGGTGAGCTATGA
Protein sequence

>MsG0680034733.01.T01

MPMLSFGTSAAVLLPNEEFIPVLTAAIQVGYRHFDTAAMYGSEEALGLAIAEAQNQGLIKNRDDIFITTKLRLGLQYVDLYLIHFPVRLKPGNEAKGVVLPFDIKGTWEAMEECSKLGLTKSIGVSNFGAKKLSELLQNATIPPAVNQVEMNVAWQQGNLRKFCQEKGIHMSAWSPLGANGASWGTLAVMESPILKDIAISTGQNCIEMDIGTRCHSSVKSFNKVRMTENLQIFNWELSADDLMKIKQIPQIRGCLVREFVSEDGPYKTLEDLWDGEL*