Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043961.01.T01 | XP_013445246.1 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 5.80E-107 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043961.01.T01 | Q941R6 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 9.89E-24 | 94 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043961.01.T01 | I3SJ62 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 2.77e-107 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048633.01 | MsG0880043961.01 | 0.859997 | 2.808018e-63 | 7.560987e-60 |
| MsG0080048652.01 | MsG0880043961.01 | 0.873056 | 1.976521e-67 | 8.460321e-64 |
| MsG0080048694.01 | MsG0880043961.01 | -0.814150 | 1.783592e-51 | 1.187469e-48 |
| MsG0080048695.01 | MsG0880043961.01 | -0.814332 | 1.626003e-51 | 1.087917e-48 |
| MsG0080048889.01 | MsG0880043961.01 | 0.833040 | 6.702430e-56 | 7.627659e-53 |
| MsG0080048948.01 | MsG0880043961.01 | -0.801333 | 9.459937e-49 | 4.505767e-46 |
| MsG0080049023.01 | MsG0880043961.01 | -0.812269 | 4.616682e-51 | 2.922107e-48 |
| MsG0180000551.01 | MsG0880043961.01 | 0.818582 | 1.817838e-52 | 1.366113e-49 |
| MsG0180000719.01 | MsG0880043961.01 | -0.804347 | 2.256578e-49 | 1.160779e-46 |
| MsG0180001925.01 | MsG0880043961.01 | -0.825419 | 4.737300e-54 | 4.315485e-51 |
| MsG0880043948.01 | MsG0880043961.01 | 0.815995 | 6.944893e-52 | 4.861812e-49 |
| MsG0880043961.01 | MsG0880043983.01 | 0.887060 | 1.987666e-72 | 1.455859e-68 |
| MsG0880043961.01 | MsG0880043989.01 | 0.969973 | 6.463550e-131 | 6.180167e-125 |
| MsG0880043961.01 | MsG0880045054.01 | 0.883648 | 3.755679e-71 | 2.402256e-67 |
| MsG0880043961.01 | MsG0880045385.01 | -0.803630 | 3.181303e-49 | 1.606550e-46 |
| MsG0880043961.01 | MsG0880045683.01 | 0.804716 | 1.890303e-49 | 9.816910e-47 |
| MsG0880043961.01 | MsG0880045790.01 | 0.821880 | 3.190800e-53 | 2.628644e-50 |
| MsG0880043961.01 | MsG0880045804.01 | 0.810862 | 9.331572e-51 | 5.689299e-48 |
| MsG0880043961.01 | MsG0880046137.01 | 0.809303 | 2.022947e-50 | 1.183464e-47 |
| MsG0880043961.01 | MsG0880046174.01 | -0.807088 | 5.996091e-50 | 3.309371e-47 |
| MsG0880043961.01 | MsG0880046463.01 | 0.805776 | 1.133874e-49 | 6.051354e-47 |
| MsG0880043961.01 | MsG0880046630.01 | -0.818727 | 1.685787e-52 | 1.271951e-49 |
| MsG0880043961.01 | MsG0880046693.01 | 0.802138 | 6.467934e-49 | 3.144144e-46 |
| MsG0880043961.01 | MsG0880047493.01 | 0.800526 | 1.382716e-48 | 6.452660e-46 |
| MsG0880043961.01 | MsG0880047714.01 | 0.802205 | 6.264159e-49 | 3.050241e-46 |
| MsG0180003849.01 | MsG0880043961.01 | 0.816346 | 5.798831e-52 | 4.098850e-49 |
| MsG0180003955.01 | MsG0880043961.01 | 0.807324 | 5.342975e-50 | 2.967225e-47 |
| MsG0180004124.01 | MsG0880043961.01 | -0.809382 | 1.944936e-50 | 1.140275e-47 |
| MsG0180004125.01 | MsG0880043961.01 | -0.804355 | 2.247708e-49 | 1.156477e-46 |
| MsG0180004510.01 | MsG0880043961.01 | 0.837933 | 3.879113e-57 | 5.116494e-54 |
| MsG0180004559.01 | MsG0880043961.01 | 0.819620 | 1.055554e-52 | 8.163737e-50 |
| MsG0180005272.01 | MsG0880043961.01 | 0.820809 | 5.637167e-53 | 4.506708e-50 |
| MsG0180005757.01 | MsG0880043961.01 | 0.808279 | 3.348366e-50 | 1.906633e-47 |
| MsG0180006026.01 | MsG0880043961.01 | 0.824366 | 8.390616e-54 | 7.416626e-51 |
| MsG0180006063.01 | MsG0880043961.01 | -0.807879 | 4.074803e-50 | 2.295677e-47 |
| MsG0180006182.01 | MsG0880043961.01 | 0.818736 | 1.677980e-52 | 1.266381e-49 |
| MsG0180006191.01 | MsG0880043961.01 | 0.821522 | 3.860651e-53 | 3.148134e-50 |
| MsG0280006423.01 | MsG0880043961.01 | 0.806262 | 8.961302e-50 | 4.842368e-47 |
| MsG0780040878.01 | MsG0880043961.01 | 0.807557 | 4.768607e-50 | 2.664176e-47 |
| MsG0780041180.01 | MsG0880043961.01 | 0.833518 | 5.094661e-56 | 5.881438e-53 |
| MsG0780041363.01 | MsG0880043961.01 | 0.834957 | 2.218934e-56 | 2.674684e-53 |
| MsG0780041531.01 | MsG0880043961.01 | -0.820726 | 5.890701e-53 | 4.698227e-50 |
| MsG0880042122.01 | MsG0880043961.01 | 0.815734 | 7.942201e-52 | 5.520767e-49 |
| MsG0880043261.01 | MsG0880043961.01 | 0.869671 | 2.599692e-66 | 9.837202e-63 |
| MsG0880043551.01 | MsG0880043961.01 | 0.816758 | 4.687225e-52 | 3.350597e-49 |
| MsG0280010950.01 | MsG0880043961.01 | 0.827736 | 1.326780e-54 | 1.291961e-51 |
| MsG0280011267.01 | MsG0880043961.01 | 0.810737 | 9.934741e-51 | 6.036637e-48 |
| MsG0380013928.01 | MsG0880043961.01 | -0.803140 | 4.017978e-49 | 2.003704e-46 |
| MsG0380014029.01 | MsG0880043961.01 | -0.801183 | 1.015433e-48 | 4.818260e-46 |
| MsG0380014129.01 | MsG0880043961.01 | -0.806335 | 8.645920e-50 | 4.680452e-47 |
| MsG0380014735.01 | MsG0880043961.01 | -0.825404 | 4.775925e-54 | 4.348922e-51 |
| MsG0680031178.01 | MsG0880043961.01 | 0.864210 | 1.432883e-64 | 4.462678e-61 |
| MsG0680031463.01 | MsG0880043961.01 | 0.809813 | 1.571479e-50 | 9.319114e-48 |
| MsG0680031686.01 | MsG0880043961.01 | 0.805761 | 1.141715e-49 | 6.091065e-47 |
| MsG0680031841.01 | MsG0880043961.01 | 0.814687 | 1.357063e-51 | 9.167072e-49 |
| MsG0680034733.01 | MsG0880043961.01 | 0.825453 | 4.648133e-54 | 4.238318e-51 |
| MsG0480019229.01 | MsG0880043961.01 | 0.814960 | 1.180308e-51 | 8.032035e-49 |
| MsG0480020345.01 | MsG0880043961.01 | 0.808058 | 3.732775e-50 | 2.112993e-47 |
| MsG0480020722.01 | MsG0880043961.01 | 0.812258 | 4.641851e-51 | 2.937171e-48 |
| MsG0480021931.01 | MsG0880043961.01 | 0.816434 | 5.540838e-52 | 3.925576e-49 |
| MsG0480022167.01 | MsG0880043961.01 | 0.823653 | 1.233338e-53 | 1.068545e-50 |
| MsG0480022428.01 | MsG0880043961.01 | 0.807040 | 6.136545e-50 | 3.382818e-47 |
| MsG0480023152.01 | MsG0880043961.01 | -0.807471 | 4.973137e-50 | 2.772461e-47 |
| MsG0480023195.01 | MsG0880043961.01 | 0.884644 | 1.608225e-71 | 1.069508e-67 |
| MsG0480023244.01 | MsG0880043961.01 | -0.806345 | 8.607437e-50 | 4.660658e-47 |
| MsG0480023322.01 | MsG0880043961.01 | 0.833999 | 3.860740e-56 | 4.521908e-53 |
| MsG0480023324.01 | MsG0880043961.01 | 0.823230 | 1.548842e-53 | 1.325796e-50 |
| MsG0580025117.01 | MsG0880043961.01 | 0.831775 | 1.378761e-55 | 1.511494e-52 |
| MsG0580025153.01 | MsG0880043961.01 | -0.804013 | 2.648402e-49 | 1.350722e-46 |
| MsG0580025822.01 | MsG0880043961.01 | 0.844415 | 7.670171e-59 | 1.237353e-55 |
| MsG0380016065.01 | MsG0880043961.01 | -0.815411 | 9.372855e-52 | 6.457244e-49 |
| MsG0380016112.01 | MsG0880043961.01 | 0.802041 | 6.771857e-49 | 3.283754e-46 |
| MsG0380016196.01 | MsG0880043961.01 | -0.807874 | 4.083633e-50 | 2.300390e-47 |
| MsG0380016449.01 | MsG0880043961.01 | 0.807239 | 5.568903e-50 | 3.085847e-47 |
| MsG0380016476.01 | MsG0880043961.01 | 0.837997 | 3.735958e-57 | 4.937358e-54 |
| MsG0380016524.01 | MsG0880043961.01 | 0.834613 | 2.709158e-56 | 3.231850e-53 |
| MsG0380017102.01 | MsG0880043961.01 | 0.842038 | 3.299215e-58 | 4.939464e-55 |
| MsG0380017231.01 | MsG0880043961.01 | 0.877061 | 8.499861e-69 | 4.215839e-65 |
| MsG0380017730.01 | MsG0880043961.01 | 0.808758 | 2.645838e-50 | 1.525508e-47 |
| MsG0380017812.01 | MsG0880043961.01 | -0.800063 | 1.717892e-48 | 7.923296e-46 |
| MsG0380017858.01 | MsG0880043961.01 | 0.827761 | 1.308615e-54 | 1.275205e-51 |
| MsG0380017992.01 | MsG0880043961.01 | 0.813270 | 2.786482e-51 | 1.811304e-48 |
| MsG0380018007.01 | MsG0880043961.01 | 0.801295 | 9.630440e-49 | 4.582671e-46 |
| MsG0580027036.01 | MsG0880043961.01 | 0.818809 | 1.615194e-52 | 1.221434e-49 |
| MsG0580028023.01 | MsG0880043961.01 | 0.848089 | 7.655379e-60 | 1.388879e-56 |
| MsG0580028565.01 | MsG0880043961.01 | 0.801201 | 1.006969e-48 | 4.780233e-46 |
| MsG0580028924.01 | MsG0880043961.01 | 0.820891 | 5.397935e-53 | 4.325339e-50 |
| MsG0580029792.01 | MsG0880043961.01 | -0.840521 | 8.268904e-58 | 1.180940e-54 |
| MsG0580030179.01 | MsG0880043961.01 | 0.810903 | 9.145529e-51 | 5.581980e-48 |
| MsG0680030315.01 | MsG0880043961.01 | 0.824590 | 7.433095e-54 | 6.613542e-51 |
| MsG0280006485.01 | MsG0880043961.01 | 0.833313 | 5.730412e-56 | 6.574907e-53 |
| MsG0280006884.01 | MsG0880043961.01 | 0.816476 | 5.423929e-52 | 3.847155e-49 |
| MsG0280007686.01 | MsG0880043961.01 | 0.849165 | 3.850995e-60 | 7.237917e-57 |
| MsG0280007786.01 | MsG0880043961.01 | 0.805974 | 1.030159e-49 | 5.525774e-47 |
| MsG0280007844.01 | MsG0880043961.01 | 0.819208 | 1.310208e-52 | 1.001813e-49 |
| MsG0280008328.01 | MsG0880043961.01 | 0.819241 | 1.287575e-52 | 9.854311e-50 |
| MsG0280008407.01 | MsG0880043961.01 | 0.805634 | 1.214250e-49 | 6.456576e-47 |
| MsG0280008495.01 | MsG0880043961.01 | 0.800600 | 1.335609e-48 | 6.244602e-46 |
| MsG0280008553.01 | MsG0880043961.01 | 0.844341 | 8.029389e-59 | 1.292313e-55 |
| MsG0280008820.01 | MsG0880043961.01 | -0.859879 | 3.047015e-63 | 8.171153e-60 |
| MsG0280009241.01 | MsG0880043961.01 | 0.862824 | 3.854823e-64 | 1.144438e-60 |
| MsG0280009416.01 | MsG0880043961.01 | 0.825121 | 5.569411e-54 | 5.031052e-51 |
| MsG0280010227.01 | MsG0880043961.01 | -0.804638 | 1.962805e-49 | 1.017229e-46 |
| MsG0280010240.01 | MsG0880043961.01 | 0.800464 | 1.423582e-48 | 6.632758e-46 |
| MsG0280010296.01 | MsG0880043961.01 | 0.842847 | 2.013194e-58 | 3.091602e-55 |
| MsG0780037232.01 | MsG0880043961.01 | 0.822740 | 2.014900e-53 | 1.701140e-50 |
| MsG0780037458.01 | MsG0880043961.01 | -0.807214 | 5.637952e-50 | 3.122068e-47 |
| MsG0780037751.01 | MsG0880043961.01 | 0.813747 | 2.188728e-51 | 1.441311e-48 |
| MsG0780038305.01 | MsG0880043961.01 | 0.810615 | 1.055572e-50 | 6.392958e-48 |
| MsG0780038810.01 | MsG0880043961.01 | 0.830710 | 2.519577e-55 | 2.675910e-52 |
| MsG0780038823.01 | MsG0880043961.01 | 0.804993 | 1.653936e-49 | 8.650873e-47 |
| MsG0780039190.01 | MsG0880043961.01 | 0.802494 | 5.461909e-49 | 2.679286e-46 |
| MsG0780039916.01 | MsG0880043961.01 | 0.825648 | 4.179236e-54 | 3.832232e-51 |
| MsG0780040118.01 | MsG0880043961.01 | 0.817330 | 3.486972e-52 | 2.531894e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043961.01.T01 | MTR_8g045695 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 7.03e-111 | 311 |
| MsG0880043961.01.T01 | MTR_8g045735 | 88.312 | 154 | 18 | 0 | 1 | 154 | 1 | 154 | 1.48e-101 | 288 |
| MsG0880043961.01.T01 | MTR_8g045665 | 87.179 | 156 | 20 | 0 | 1 | 156 | 1 | 156 | 7.32e-100 | 284 |
| MsG0880043961.01.T01 | MTR_8g045640 | 83.333 | 156 | 26 | 0 | 1 | 156 | 1 | 156 | 7.28e-96 | 274 |
| MsG0880043961.01.T01 | MTR_8g045560 | 82.692 | 156 | 27 | 0 | 1 | 156 | 1 | 156 | 1.38e-94 | 270 |
| MsG0880043961.01.T01 | MTR_8g045520 | 78.981 | 157 | 32 | 1 | 1 | 156 | 1 | 157 | 1.54e-89 | 258 |
| MsG0880043961.01.T01 | MTR_8g045490 | 75.159 | 157 | 37 | 2 | 1 | 156 | 1 | 156 | 9.84e-86 | 248 |
| MsG0880043961.01.T01 | MTR_8g045400 | 73.248 | 157 | 40 | 2 | 1 | 156 | 1 | 156 | 3.62e-83 | 241 |
| MsG0880043961.01.T01 | MTR_8g045570 | 71.711 | 152 | 42 | 1 | 1 | 151 | 1 | 152 | 9.80e-81 | 235 |
| MsG0880043961.01.T01 | MTR_8g045555 | 71.053 | 152 | 43 | 1 | 1 | 151 | 1 | 152 | 7.36e-80 | 233 |
| MsG0880043961.01.T01 | MTR_8g045300 | 67.949 | 156 | 49 | 1 | 1 | 155 | 1 | 156 | 6.83e-79 | 231 |
| MsG0880043961.01.T01 | MTR_1g030810 | 43.137 | 153 | 83 | 3 | 1 | 150 | 1 | 152 | 1.59e-39 | 131 |
| MsG0880043961.01.T01 | MTR_1g030820 | 38.562 | 153 | 90 | 3 | 1 | 150 | 1 | 152 | 1.25e-37 | 126 |
| MsG0880043961.01.T01 | MTR_1g030840 | 38.462 | 156 | 87 | 5 | 1 | 148 | 1 | 155 | 6.49e-29 | 104 |
| MsG0880043961.01.T01 | MTR_8g012550 | 34.000 | 150 | 95 | 4 | 6 | 153 | 8 | 155 | 2.40e-26 | 97.8 |
| MsG0880043961.01.T01 | MTR_1g031640 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 1.94e-22 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043961.01.T01 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 1.31e-25 | 96.3 |
| MsG0880043961.01.T01 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 1.31e-25 | 96.3 |
| MsG0880043961.01.T01 | AT1G70840 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 1.01e-24 | 94.0 |
| MsG0880043961.01.T01 | AT1G70830 | 36.601 | 153 | 93 | 4 | 3 | 152 | 22 | 173 | 2.70e-24 | 92.8 |
| MsG0880043961.01.T01 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 3.95e-24 | 93.2 |
| MsG0880043961.01.T01 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 6.26e-24 | 91.7 |
| MsG0880043961.01.T01 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 1.76e-23 | 92.8 |
| MsG0880043961.01.T01 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 4.49e-23 | 93.2 |
| MsG0880043961.01.T01 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 1.57e-21 | 89.0 |
| MsG0880043961.01.T01 | AT5G28000 | 32.680 | 153 | 99 | 4 | 3 | 152 | 13 | 164 | 2.90e-22 | 87.4 |
| MsG0880043961.01.T01 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 5.45e-22 | 89.7 |
| MsG0880043961.01.T01 | AT1G70830 | 32.990 | 97 | 63 | 2 | 59 | 153 | 31 | 127 | 3.65e-11 | 60.1 |
| MsG0880043961.01.T01 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 1.07e-21 | 87.8 |
| MsG0880043961.01.T01 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 2.41e-21 | 88.2 |
| MsG0880043961.01.T01 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 7.55e-21 | 87.0 |
| MsG0880043961.01.T01 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 2.41e-21 | 88.2 |
| MsG0880043961.01.T01 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 7.55e-21 | 87.0 |
| MsG0880043961.01.T01 | AT4G23670 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 2.05e-20 | 82.4 |
| MsG0880043961.01.T01 | AT1G14930 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 2.71e-19 | 79.7 |
| MsG0880043961.01.T01 | AT1G70870 | 34.839 | 155 | 79 | 5 | 1 | 150 | 1 | 138 | 7.19e-19 | 78.2 |
| MsG0880043961.01.T01 | AT2G01520 | 29.412 | 153 | 104 | 4 | 1 | 151 | 1 | 151 | 1.10e-18 | 77.8 |
| MsG0880043961.01.T01 | AT2G01530 | 30.719 | 153 | 102 | 4 | 1 | 151 | 1 | 151 | 9.74e-18 | 75.5 |
| MsG0880043961.01.T01 | AT1G70880 | 29.412 | 153 | 104 | 4 | 3 | 152 | 8 | 159 | 3.97e-17 | 73.9 |
| MsG0880043961.01.T01 | AT1G14940 | 28.662 | 157 | 108 | 4 | 1 | 155 | 1 | 155 | 6.06e-17 | 73.6 |
| MsG0880043961.01.T01 | AT1G35260 | 30.612 | 147 | 91 | 5 | 9 | 149 | 8 | 149 | 2.31e-16 | 72.0 |
| MsG0880043961.01.T01 | AT4G14060 | 28.758 | 153 | 105 | 4 | 1 | 151 | 1 | 151 | 2.36e-16 | 72.0 |
| MsG0880043961.01.T01 | AT4G23680 | 28.947 | 152 | 104 | 4 | 1 | 150 | 1 | 150 | 3.01e-16 | 71.6 |
| MsG0880043961.01.T01 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 4.83e-16 | 71.2 |
| MsG0880043961.01.T01 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.03e-16 | 71.2 |
| MsG0880043961.01.T01 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.03e-16 | 71.2 |
| MsG0880043961.01.T01 | AT1G14950 | 28.025 | 157 | 109 | 4 | 1 | 155 | 1 | 155 | 8.11e-16 | 70.5 |
| MsG0880043961.01.T01 | AT1G23120 | 28.667 | 150 | 99 | 5 | 3 | 149 | 1 | 145 | 1.76e-15 | 69.3 |
| MsG0880043961.01.T01 | AT1G23120 | 27.660 | 141 | 96 | 4 | 10 | 149 | 60 | 195 | 4.61e-15 | 69.7 |
| MsG0880043961.01.T01 | AT1G30990 | 27.815 | 151 | 104 | 5 | 1 | 149 | 1 | 148 | 1.56e-13 | 64.3 |
| MsG0880043961.01.T01 | AT1G14960 | 26.452 | 155 | 110 | 4 | 1 | 153 | 1 | 153 | 8.69e-13 | 62.4 |
| MsG0880043961.01.T01 | AT1G35310 | 27.338 | 139 | 97 | 4 | 13 | 149 | 12 | 148 | 1.60e-12 | 62.0 |
| MsG0880043961.01.T01 | AT3G26460 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 2.27e-12 | 61.6 |
| MsG0880043961.01.T01 | AT3G26450 | 24.675 | 154 | 111 | 5 | 1 | 151 | 1 | 152 | 4.26e-11 | 58.2 |
Find 27 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCACATACAAGCTATT+TGG | 0.273919 | 8:-33443022 | MsG0880043961.01.T01:CDS |
| TGGAGATATTGAAAACTATA+AGG | 0.391039 | 8:-33442999 | MsG0880043961.01.T01:CDS |
| ATGGAAATTCTGCTGTTAGA+TGG | 0.411619 | 8:-33442940 | MsG0880043961.01.T01:CDS |
| GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8:-33444201 | MsG0880043961.01.T01:CDS |
| AGGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8:+33442878 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8:-33444048 | MsG0880043961.01.T01:intron |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8:-33442851 | MsG0880043961.01.T01:CDS |
| AGCTTCATGAGGGTGAAGAT+TGG | 0.493681 | 8:-33444089 | MsG0880043961.01.T01:CDS |
| TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8:-33442828 | MsG0880043961.01.T01:CDS |
| AGATTGGCATCATACTGATT+CGG | 0.504369 | 8:-33444073 | MsG0880043961.01.T01:CDS |
| TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8:-33442835 | MsG0880043961.01.T01:CDS |
| ATCTTCACCCTCATGAAGCT+TGG | 0.519812 | 8:+33444092 | None:intergenic |
| ATCACATACAAGCTATTTGG+TGG | 0.530005 | 8:-33443019 | MsG0880043961.01.T01:CDS |
| GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8:-33444200 | MsG0880043961.01.T01:CDS |
| ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8:-33442836 | MsG0880043961.01.T01:CDS |
| AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8:+33444168 | None:intergenic |
| GAAGTGCTTAACAAGGCTGA+TGG | 0.573383 | 8:-33442959 | MsG0880043961.01.T01:CDS |
| ATGTTGATACTCCAAATGGC+TGG | 0.578150 | 8:-33442889 | MsG0880043961.01.T01:CDS |
| TGATACTCCAAATGGCTGGA+TGG | 0.587093 | 8:-33442885 | MsG0880043961.01.T01:CDS |
| GAGGATGTTGATACTCCAAA+TGG | 0.593330 | 8:-33442893 | MsG0880043961.01.T01:CDS |
| ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8:-33444062 | MsG0880043961.01.T01:CDS |
| TCATCATACCAAGCTTCATG+AGG | 0.610699 | 8:-33444100 | MsG0880043961.01.T01:CDS |
| CATCATACCAAGCTTCATGA+GGG | 0.642119 | 8:-33444099 | MsG0880043961.01.T01:CDS |
| CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8:-33442966 | MsG0880043961.01.T01:CDS |
| TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8:-33442834 | MsG0880043961.01.T01:CDS |
| TGACATAACAACAGATGGCG+AGG | 0.663434 | 8:-33443092 | MsG0880043961.01.T01:intron |
| TGATTATGAGAAGAACAATG+AGG | 0.694185 | 8:-33442912 | MsG0880043961.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTACTATAAAATAGTA+AGG | - | Chr8:33443708-33443727 | MsG0880043961.01.T01:intron | 10.0% |
| !! | AATTAATAAAAAAAAGGTAA+CGG | + | Chr8:33443374-33443393 | None:intergenic | 10.0% |
| !! | TTATCTTATTATAATATTTC+TGG | - | Chr8:33443846-33443865 | MsG0880043961.01.T01:intron | 10.0% |
| !!! | AAAACTTATTTTATTCTTTT+TGG | - | Chr8:33443902-33443921 | MsG0880043961.01.T01:intron | 10.0% |
| !! | AAATTCTAAATTAAGTCAAT+AGG | + | Chr8:33443206-33443225 | None:intergenic | 15.0% |
| !! | AGATAATCTATATAAAAAGT+AGG | - | Chr8:33443576-33443595 | MsG0880043961.01.T01:intron | 15.0% |
| !! | GATAATCTATATAAAAAGTA+GGG | - | Chr8:33443577-33443596 | MsG0880043961.01.T01:intron | 15.0% |
| !! | TATAGTAATAAAAAGAAGAT+TGG | - | Chr8:33443092-33443111 | MsG0880043961.01.T01:intron | 15.0% |
| !!! | GAATAAAATAAGTTTTTCAA+AGG | + | Chr8:33443898-33443917 | None:intergenic | 15.0% |
| !!! | TTATTTTACTACAAACTTTA+AGG | + | Chr8:33443643-33443662 | None:intergenic | 15.0% |
| !! | CATCATATAAGATCTTTAAA+AGG | - | Chr8:33443749-33443768 | MsG0880043961.01.T01:intron | 20.0% |
| !! | TATTATTTAGAAAAAGGAAG+AGG | - | Chr8:33443426-33443445 | MsG0880043961.01.T01:intron | 20.0% |
| ! | AAAAAATTATACTCGTACCA+TGG | + | Chr8:33443517-33443536 | None:intergenic | 25.0% |
| ! | AAAATCACATACAAGCTATT+TGG | - | Chr8:33444008-33444027 | MsG0880043961.01.T01:intron | 25.0% |
| ! | AGTAATAAAAAGAAGATTGG+TGG | - | Chr8:33443095-33443114 | MsG0880043961.01.T01:intron | 25.0% |
| ! | GTAAACTTATTACTGAACTT+GGG | - | Chr8:33442830-33442849 | MsG0880043961.01.T01:CDS | 25.0% |
| ! | GTAATAAAAAGAAGATTGGT+GGG | - | Chr8:33443096-33443115 | MsG0880043961.01.T01:intron | 25.0% |
| ! | TATCAAACAAGATGATGATT+TGG | + | Chr8:33443034-33443053 | None:intergenic | 25.0% |
| ! | TCTTCGTTATAGAATTCATT+TGG | + | Chr8:33443132-33443151 | None:intergenic | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | - | Chr8:33444031-33444050 | MsG0880043961.01.T01:intron | 25.0% |
| !!! | ATCTTTAAAAGGTGTTTTAG+AGG | - | Chr8:33443760-33443779 | MsG0880043961.01.T01:intron | 25.0% |
| GGTAAACTTATTACTGAACT+TGG | - | Chr8:33442829-33442848 | MsG0880043961.01.T01:CDS | 30.0% | |
| GTTTGTATGATATGATCCTT+CGG | - | Chr8:33443599-33443618 | MsG0880043961.01.T01:intron | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | - | Chr8:33444118-33444137 | MsG0880043961.01.T01:CDS | 30.0% | |
| !! | AAAAGCACTAGAGATATTGA+TGG | - | Chr8:33444179-33444198 | MsG0880043961.01.T01:CDS | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | - | Chr8:33442982-33443001 | MsG0880043961.01.T01:CDS | 35.0% | |
| AAAGCAACAAATGACCCTAA+AGG | - | Chr8:33443459-33443478 | MsG0880043961.01.T01:intron | 35.0% | |
| AGTAGCATCTCTTTCCTTTA+GGG | + | Chr8:33443476-33443495 | None:intergenic | 35.0% | |
| ATCACATACAAGCTATTTGG+TGG | - | Chr8:33444011-33444030 | MsG0880043961.01.T01:intron | 35.0% | |
| ATGGAAATTCTGCTGTTAGA+TGG | - | Chr8:33444090-33444109 | MsG0880043961.01.T01:CDS | 35.0% | |
| TATCGAAATCATTGTACACG+AGG | - | Chr8:33443309-33443328 | MsG0880043961.01.T01:intron | 35.0% | |
| ! | AGATTGGCATCATACTGATT+CGG | - | Chr8:33442957-33442976 | MsG0880043961.01.T01:CDS | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | - | Chr8:33444194-33444213 | MsG0880043961.01.T01:CDS | 35.0% |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | + | Chr8:33444175-33444194 | None:intergenic | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | - | Chr8:33444195-33444214 | MsG0880043961.01.T01:CDS | 35.0% |
| !! | ATACTGATTCGGTTAAACAC+TGG | - | Chr8:33442968-33442987 | MsG0880043961.01.T01:CDS | 35.0% |
| !! | CATCTTAGAAGTGCTTAACA+AGG | - | Chr8:33444064-33444083 | MsG0880043961.01.T01:CDS | 35.0% |
| AACCACCTTTGTATTCACCA+TGG | - | Chr8:33443497-33443516 | MsG0880043961.01.T01:intron | 40.0% | |
| AGTTTGTAGAACTTGTCAGC+TGG | + | Chr8:33442865-33442884 | None:intergenic | 40.0% | |
| ATGTTGATACTCCAAATGGC+TGG | - | Chr8:33444141-33444160 | MsG0880043961.01.T01:CDS | 40.0% | |
| CATCATACCAAGCTTCATGA+GGG | - | Chr8:33442931-33442950 | MsG0880043961.01.T01:CDS | 40.0% | |
| GAGGATGTTGATACTCCAAA+TGG | - | Chr8:33444137-33444156 | MsG0880043961.01.T01:CDS | 40.0% | |
| GAGTAGCATCTCTTTCCTTT+AGG | + | Chr8:33443477-33443496 | None:intergenic | 40.0% | |
| TACCATGGTGAATACAAAGG+TGG | + | Chr8:33443502-33443521 | None:intergenic | 40.0% | |
| TCATCATACCAAGCTTCATG+AGG | - | Chr8:33442930-33442949 | MsG0880043961.01.T01:CDS | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | - | Chr8:33444202-33444221 | MsG0880043961.01.T01:CDS | 40.0% | |
| TCGTACCATGGTGAATACAA+AGG | + | Chr8:33443505-33443524 | None:intergenic | 40.0% | |
| TGAGACTGATCTAACAACGA+AGG | - | Chr8:33443169-33443188 | MsG0880043961.01.T01:intron | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | - | Chr8:33444196-33444215 | MsG0880043961.01.T01:CDS | 40.0% | |
| ! | CGTCTTTAGACATTTTCCGA+AGG | + | Chr8:33443618-33443637 | None:intergenic | 40.0% |
| AGCTTCATGAGGGTGAAGAT+TGG | - | Chr8:33442941-33442960 | MsG0880043961.01.T01:CDS | 45.0% | |
| ATCTTCACCCTCATGAAGCT+TGG | + | Chr8:33442941-33442960 | None:intergenic | 45.0% | |
| GCCATCTGTTGTTATGTCAG+AGG | + | Chr8:33443937-33443956 | None:intergenic | 45.0% | |
| GCCTCTGACATAACAACAGA+TGG | - | Chr8:33443933-33443952 | MsG0880043961.01.T01:intron | 45.0% | |
| TGACATAACAACAGATGGCG+AGG | - | Chr8:33443938-33443957 | MsG0880043961.01.T01:intron | 45.0% | |
| TGATACTCCAAATGGCTGGA+TGG | - | Chr8:33444145-33444164 | MsG0880043961.01.T01:CDS | 45.0% | |
| TTGTACACGAGGTGAAGTAC+TGG | - | Chr8:33443320-33443339 | MsG0880043961.01.T01:intron | 45.0% | |
| ! | GAAGTGCTTAACAAGGCTGA+TGG | - | Chr8:33444071-33444090 | MsG0880043961.01.T01:CDS | 45.0% |
| !! | AAATAATATATATTATGAAT+GGG | + | Chr8:33443414-33443433 | None:intergenic | 5.0% |
| !! | AATATATATTATTTAGAAAA+AGG | - | Chr8:33443420-33443439 | MsG0880043961.01.T01:intron | 5.0% |
| !! | ATTCTTAATTAATAAAAAAA+AGG | + | Chr8:33443380-33443399 | None:intergenic | 5.0% |
| !! | TAAATAATATATATTATGAA+TGG | + | Chr8:33443415-33443434 | None:intergenic | 5.0% |
| !!! | TAATTTAGAATTTTTTTAAT+TGG | - | Chr8:33443213-33443232 | MsG0880043961.01.T01:intron | 5.0% |
| AGGTAGTCCATCCAGCCATT+TGG | + | Chr8:33444155-33444174 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 33442817 | 33444235 | 33442817 | ID=MsG0880043961.01;Name=MsG0880043961.01 |
| Chr8 | mRNA | 33442817 | 33444235 | 33442817 | ID=MsG0880043961.01.T01;Parent=MsG0880043961.01;Name=MsG0880043961.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|156 |
| Chr8 | exon | 33444049 | 33444235 | 33444049 | ID=MsG0880043961.01.T01:exon:10193;Parent=MsG0880043961.01.T01 |
| Chr8 | exon | 33442817 | 33443100 | 33442817 | ID=MsG0880043961.01.T01:exon:10192;Parent=MsG0880043961.01.T01 |
| Chr8 | CDS | 33444049 | 33444235 | 33444049 | ID=MsG0880043961.01.T01:cds;Parent=MsG0880043961.01.T01 |
| Chr8 | CDS | 33442817 | 33443100 | 33442817 | ID=MsG0880043961.01.T01:cds;Parent=MsG0880043961.01.T01 |
| Gene Sequence |
| Protein sequence |
