Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017231.01.T01 | KEH35837.1 | 94.444 | 108 | 2 | 1 | 1 | 108 | 1 | 104 | 8.98E-66 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017231.01.T01 | A0A072V1Y9 | 94.444 | 108 | 2 | 1 | 1 | 108 | 1 | 104 | 4.29e-66 | 203 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047967.01 | MsG0380017231.01 | -0.810264 | 1.256431e-50 | 7.539008e-48 |
| MsG0080048150.01 | MsG0380017231.01 | 0.801348 | 9.396521e-49 | 4.477252e-46 |
| MsG0080048633.01 | MsG0380017231.01 | 0.878176 | 3.469982e-69 | 1.793867e-65 |
| MsG0080048652.01 | MsG0380017231.01 | 0.888782 | 4.348714e-73 | 3.415524e-69 |
| MsG0080048694.01 | MsG0380017231.01 | -0.840876 | 6.677499e-58 | 9.642015e-55 |
| MsG0080048695.01 | MsG0380017231.01 | -0.840570 | 8.032740e-58 | 1.148855e-54 |
| MsG0080048889.01 | MsG0380017231.01 | 0.839058 | 1.988709e-57 | 2.714408e-54 |
| MsG0080048948.01 | MsG0380017231.01 | -0.872041 | 4.312499e-67 | 1.777845e-63 |
| MsG0080049023.01 | MsG0380017231.01 | -0.815691 | 8.119772e-52 | 5.637300e-49 |
| MsG0080049076.01 | MsG0380017231.01 | -0.811046 | 8.516972e-51 | 5.217945e-48 |
| MsG0180000076.01 | MsG0380017231.01 | 0.824143 | 9.466477e-54 | 8.315089e-51 |
| MsG0180000373.01 | MsG0380017231.01 | 0.803110 | 4.075442e-49 | 2.030763e-46 |
| MsG0180000552.01 | MsG0380017231.01 | 0.809560 | 1.781194e-50 | 1.049214e-47 |
| MsG0180000659.01 | MsG0380017231.01 | 0.804966 | 1.675623e-49 | 8.758502e-47 |
| MsG0180000719.01 | MsG0380017231.01 | -0.815325 | 9.793739e-52 | 6.731378e-49 |
| MsG0180001079.01 | MsG0380017231.01 | 0.802788 | 4.750893e-49 | 2.348168e-46 |
| MsG0180001143.01 | MsG0380017231.01 | 0.826522 | 2.589905e-54 | 2.434617e-51 |
| MsG0180001234.01 | MsG0380017231.01 | 0.829655 | 4.559271e-55 | 4.696133e-52 |
| MsG0180001925.01 | MsG0380017231.01 | -0.848673 | 5.276017e-60 | 9.756711e-57 |
| MsG0180002808.01 | MsG0380017231.01 | 0.817886 | 2.613306e-52 | 1.926636e-49 |
| MsG0180004124.01 | MsG0380017231.01 | -0.840729 | 7.294667e-58 | 1.048541e-54 |
| MsG0180004125.01 | MsG0380017231.01 | -0.837058 | 6.501818e-57 | 8.347982e-54 |
| MsG0180004510.01 | MsG0380017231.01 | 0.816173 | 6.337112e-52 | 4.458102e-49 |
| MsG0180004559.01 | MsG0380017231.01 | 0.888839 | 4.132936e-73 | 3.253681e-69 |
| MsG0180004688.01 | MsG0380017231.01 | 0.815113 | 1.091911e-51 | 7.460998e-49 |
| MsG0180004731.01 | MsG0380017231.01 | -0.821544 | 3.816859e-53 | 3.114475e-50 |
| MsG0180004737.01 | MsG0380017231.01 | -0.832897 | 7.271933e-56 | 8.239942e-53 |
| MsG0180004787.01 | MsG0380017231.01 | -0.800056 | 1.724060e-48 | 7.950131e-46 |
| MsG0180005369.01 | MsG0380017231.01 | -0.817205 | 3.721535e-52 | 2.692886e-49 |
| MsG0180005514.01 | MsG0380017231.01 | 0.823582 | 1.282042e-53 | 1.108380e-50 |
| MsG0180005667.01 | MsG0380017231.01 | 0.812190 | 4.802655e-51 | 3.033359e-48 |
| MsG0180006026.01 | MsG0380017231.01 | 0.828257 | 9.940960e-55 | 9.828547e-52 |
| MsG0180006063.01 | MsG0380017231.01 | -0.820677 | 6.044263e-53 | 4.814021e-50 |
| MsG0180006182.01 | MsG0380017231.01 | 0.805333 | 1.403943e-49 | 7.407611e-47 |
| MsG0180006191.01 | MsG0380017231.01 | 0.815513 | 8.894721e-52 | 6.145393e-49 |
| MsG0280006420.01 | MsG0380017231.01 | 0.810176 | 1.312924e-50 | 7.859601e-48 |
| MsG0380013063.01 | MsG0380017231.01 | -0.835004 | 2.159221e-56 | 2.606256e-53 |
| MsG0380013892.01 | MsG0380017231.01 | -0.829846 | 4.096145e-55 | 4.243245e-52 |
| MsG0380013928.01 | MsG0380017231.01 | -0.832112 | 1.138005e-55 | 1.259702e-52 |
| MsG0380013945.01 | MsG0380017231.01 | -0.801172 | 1.020806e-48 | 4.842364e-46 |
| MsG0380013986.01 | MsG0380017231.01 | -0.831144 | 1.971253e-55 | 2.120521e-52 |
| MsG0380013997.01 | MsG0380017231.01 | -0.822659 | 2.104510e-53 | 1.772656e-50 |
| MsG0380014016.01 | MsG0380017231.01 | -0.825314 | 5.015020e-54 | 4.555121e-51 |
| MsG0380014029.01 | MsG0380017231.01 | -0.832888 | 7.308890e-56 | 8.279734e-53 |
| MsG0380014410.01 | MsG0380017231.01 | 0.834715 | 2.553821e-56 | 3.055410e-53 |
| MsG0380014642.01 | MsG0380017231.01 | -0.800294 | 1.541806e-48 | 7.153134e-46 |
| MsG0380014735.01 | MsG0380017231.01 | -0.833892 | 4.107312e-56 | 4.795306e-53 |
| MsG0380014754.01 | MsG0380017231.01 | 0.861781 | 8.058161e-64 | 2.306215e-60 |
| MsG0380015691.01 | MsG0380017231.01 | 0.823902 | 1.078375e-53 | 9.408182e-51 |
| MsG0380015802.01 | MsG0380017231.01 | -0.810139 | 1.337057e-50 | 7.996511e-48 |
| MsG0380016008.01 | MsG0380017231.01 | 0.831143 | 1.972665e-55 | 2.121986e-52 |
| MsG0380016018.01 | MsG0380017231.01 | 0.825161 | 5.451077e-54 | 4.929847e-51 |
| MsG0380016065.01 | MsG0380017231.01 | -0.843917 | 1.043076e-58 | 1.656857e-55 |
| MsG0380016476.01 | MsG0380017231.01 | 0.826673 | 2.384753e-54 | 2.251498e-51 |
| MsG0380016524.01 | MsG0380017231.01 | 0.827376 | 1.618726e-54 | 1.560162e-51 |
| MsG0380016935.01 | MsG0380017231.01 | -0.813443 | 2.552479e-51 | 1.667208e-48 |
| MsG0380017231.01 | MsG0380017730.01 | 0.838574 | 2.652670e-57 | 3.567833e-54 |
| MsG0380017231.01 | MsG0380017804.01 | -0.832768 | 7.829188e-56 | 8.837306e-53 |
| MsG0380017231.01 | MsG0380017935.01 | -0.806441 | 8.212425e-50 | 4.457874e-47 |
| MsG0380017231.01 | MsG0380018007.01 | 0.825496 | 4.540819e-54 | 4.145687e-51 |
| MsG0380017231.01 | MsG0480019028.01 | -0.824871 | 6.381381e-54 | 5.723662e-51 |
| MsG0380017231.01 | MsG0480019588.01 | 0.856643 | 2.800004e-62 | 6.727835e-59 |
| MsG0380017231.01 | MsG0480019635.01 | 0.824705 | 6.983876e-54 | 6.234546e-51 |
| MsG0380017231.01 | MsG0480019666.01 | 0.816746 | 4.716339e-52 | 3.370204e-49 |
| MsG0380017231.01 | MsG0480020263.01 | 0.868242 | 7.549961e-66 | 2.711939e-62 |
| MsG0380017231.01 | MsG0480021175.01 | 0.801960 | 7.035529e-49 | 3.404515e-46 |
| MsG0380017231.01 | MsG0480021600.01 | 0.803266 | 3.783738e-49 | 1.893008e-46 |
| MsG0380017231.01 | MsG0480021912.01 | -0.804242 | 2.373238e-49 | 1.217431e-46 |
| MsG0380017231.01 | MsG0480021972.01 | 0.811541 | 6.649142e-51 | 4.127139e-48 |
| MsG0380017231.01 | MsG0480022141.01 | 0.817681 | 2.906483e-52 | 2.130799e-49 |
| MsG0380017231.01 | MsG0480022167.01 | 0.865532 | 5.514770e-65 | 1.800354e-61 |
| MsG0380017231.01 | MsG0480022428.01 | 0.809896 | 1.508499e-50 | 8.964566e-48 |
| MsG0380017231.01 | MsG0480023152.01 | -0.816391 | 5.665918e-52 | 4.009580e-49 |
| MsG0380017231.01 | MsG0480023195.01 | 0.899537 | 1.797163e-77 | 2.232097e-73 |
| MsG0380017231.01 | MsG0480023242.01 | -0.800226 | 1.591505e-48 | 7.370740e-46 |
| MsG0380017231.01 | MsG0480023244.01 | -0.801316 | 9.537154e-49 | 4.540658e-46 |
| MsG0380017231.01 | MsG0480023322.01 | 0.828363 | 9.374190e-55 | 9.296985e-52 |
| MsG0380017231.01 | MsG0480023324.01 | 0.851967 | 6.283559e-61 | 1.293161e-57 |
| MsG0380017231.01 | MsG0580024119.01 | 0.811219 | 7.811848e-51 | 4.807669e-48 |
| MsG0380017231.01 | MsG0580024478.01 | 0.857643 | 1.419302e-62 | 3.527191e-59 |
| MsG0380017231.01 | MsG0580024493.01 | -0.802650 | 5.073300e-49 | 2.498541e-46 |
| MsG0380017231.01 | MsG0580025105.01 | -0.802532 | 5.364896e-49 | 2.634250e-46 |
| MsG0380017231.01 | MsG0580025117.01 | 0.870556 | 1.334384e-66 | 5.213210e-63 |
| MsG0380017231.01 | MsG0580025153.01 | -0.802337 | 5.884615e-49 | 2.875304e-46 |
| MsG0380017231.01 | MsG0580025385.01 | 0.841188 | 5.529795e-58 | 8.061680e-55 |
| MsG0380017231.01 | MsG0580025443.01 | 0.847343 | 1.228071e-59 | 2.175971e-56 |
| MsG0380017231.01 | MsG0580025444.01 | 0.832990 | 6.893928e-56 | 7.834117e-53 |
| MsG0380017231.01 | MsG0580025463.01 | 0.801629 | 8.227436e-49 | 3.947997e-46 |
| MsG0380017231.01 | MsG0580025464.01 | 0.806016 | 1.009315e-49 | 5.419840e-47 |
| MsG0380017231.01 | MsG0580025486.01 | -0.807759 | 4.321004e-50 | 2.426876e-47 |
| MsG0380017231.01 | MsG0580025572.01 | 0.801577 | 8.434187e-49 | 4.041944e-46 |
| MsG0380017231.01 | MsG0580025573.01 | 0.829086 | 6.267937e-55 | 6.348835e-52 |
| MsG0380017231.01 | MsG0580025575.01 | 0.807411 | 5.120871e-50 | 2.850331e-47 |
| MsG0380017231.01 | MsG0580025620.01 | 0.825929 | 3.584917e-54 | 3.313756e-51 |
| MsG0380017231.01 | MsG0580025822.01 | 0.828712 | 7.721026e-55 | 7.735357e-52 |
| MsG0380017231.01 | MsG0580026237.01 | -0.821429 | 4.057090e-53 | 3.299891e-50 |
| MsG0380017231.01 | MsG0580027276.01 | -0.800686 | 1.282969e-48 | 6.011385e-46 |
| MsG0380017231.01 | MsG0580028023.01 | 0.801946 | 7.082180e-49 | 3.425893e-46 |
| MsG0380017231.01 | MsG0580028330.01 | 0.851762 | 7.186332e-61 | 1.469649e-57 |
| MsG0380017231.01 | MsG0580028924.01 | 0.847139 | 1.396762e-59 | 2.459311e-56 |
| MsG0380017231.01 | MsG0580029023.01 | 0.864405 | 1.245077e-64 | 3.904864e-61 |
| MsG0380017231.01 | MsG0580029623.01 | 0.881951 | 1.565474e-70 | 9.356310e-67 |
| MsG0380017231.01 | MsG0580029792.01 | -0.866109 | 3.624306e-65 | 1.207458e-61 |
| MsG0380017231.01 | MsG0580030019.01 | 0.806434 | 8.242100e-50 | 4.473075e-47 |
| MsG0380017231.01 | MsG0580030179.01 | 0.825173 | 5.414894e-54 | 4.898852e-51 |
| MsG0380017231.01 | MsG0680030315.01 | 0.808946 | 2.412481e-50 | 1.397880e-47 |
| MsG0380017231.01 | MsG0680031178.01 | 0.863973 | 1.697711e-64 | 5.243755e-61 |
| MsG0380017231.01 | MsG0680031463.01 | 0.805576 | 1.248535e-49 | 6.628892e-47 |
| MsG0380017231.01 | MsG0680031686.01 | 0.805818 | 1.110874e-49 | 5.934951e-47 |
| MsG0380017231.01 | MsG0680031841.01 | 0.818330 | 2.074087e-52 | 1.547940e-49 |
| MsG0380017231.01 | MsG0680034137.01 | 0.802492 | 5.469197e-49 | 2.682662e-46 |
| MsG0380017231.01 | MsG0680034318.01 | -0.807955 | 3.925322e-50 | 2.216021e-47 |
| MsG0380017231.01 | MsG0680034733.01 | 0.822583 | 2.191642e-53 | 1.842193e-50 |
| MsG0380017231.01 | MsG0680035870.01 | -0.824694 | 7.025690e-54 | 6.269988e-51 |
| MsG0380017231.01 | MsG0780037458.01 | -0.804363 | 2.238916e-49 | 1.152187e-46 |
| MsG0380017231.01 | MsG0780037751.01 | 0.837697 | 4.460281e-57 | 5.840866e-54 |
| MsG0380017231.01 | MsG0780037982.01 | -0.833227 | 6.018267e-56 | 6.887248e-53 |
| MsG0380017231.01 | MsG0780038305.01 | 0.827687 | 1.363184e-54 | 1.325502e-51 |
| MsG0380017231.01 | MsG0780038810.01 | 0.849519 | 3.068842e-60 | 5.832787e-57 |
| MsG0380017231.01 | MsG0780038823.01 | 0.869707 | 2.531074e-66 | 9.590099e-63 |
| MsG0380017231.01 | MsG0780039431.01 | 0.800505 | 1.396536e-48 | 6.513605e-46 |
| MsG0380017231.01 | MsG0780039642.01 | 0.830490 | 2.851709e-55 | 3.008890e-52 |
| MsG0380017231.01 | MsG0780039916.01 | 0.814290 | 1.661245e-51 | 1.110246e-48 |
| MsG0380017231.01 | MsG0780040266.01 | 0.837163 | 6.113323e-57 | 7.874041e-54 |
| MsG0380017231.01 | MsG0780041079.01 | 0.812957 | 3.264481e-51 | 2.104048e-48 |
| MsG0380017231.01 | MsG0780041100.01 | 0.827187 | 1.796653e-54 | 1.721924e-51 |
| MsG0380017231.01 | MsG0780041180.01 | 0.810661 | 1.031826e-50 | 6.256877e-48 |
| MsG0380017231.01 | MsG0780041225.01 | 0.810072 | 1.382078e-50 | 8.251538e-48 |
| MsG0380017231.01 | MsG0780041363.01 | 0.825090 | 5.665938e-54 | 5.113797e-51 |
| MsG0380017231.01 | MsG0780041531.01 | -0.868171 | 7.963141e-66 | 2.853208e-62 |
| MsG0380017231.01 | MsG0880042046.01 | 0.803008 | 4.278852e-49 | 2.126498e-46 |
| MsG0380017231.01 | MsG0880042122.01 | 0.823206 | 1.568956e-53 | 1.342109e-50 |
| MsG0380017231.01 | MsG0880042291.01 | -0.800376 | 1.483922e-48 | 6.898838e-46 |
| MsG0380017231.01 | MsG0880043261.01 | 0.911324 | 6.918074e-83 | 1.473947e-78 |
| MsG0380017231.01 | MsG0880043551.01 | 0.802110 | 6.552647e-49 | 3.183076e-46 |
| MsG0380017231.01 | MsG0880043948.01 | 0.858230 | 9.501576e-63 | 2.407954e-59 |
| MsG0380017231.01 | MsG0880043961.01 | 0.877061 | 8.499861e-69 | 4.215839e-65 |
| MsG0380017231.01 | MsG0880043983.01 | 0.896974 | 2.201709e-76 | 2.436764e-72 |
| MsG0380017231.01 | MsG0880043989.01 | 0.878045 | 3.857331e-69 | 1.983856e-65 |
| MsG0380017231.01 | MsG0880044688.01 | 0.807798 | 4.238836e-50 | 2.383194e-47 |
| MsG0380017231.01 | MsG0880044855.01 | 0.801673 | 8.060129e-49 | 3.872023e-46 |
| MsG0380017231.01 | MsG0880045385.01 | -0.801474 | 8.851510e-49 | 4.231040e-46 |
| MsG0380017231.01 | MsG0880045683.01 | 0.806567 | 7.727542e-50 | 4.208130e-47 |
| MsG0380017231.01 | MsG0880045804.01 | 0.835228 | 1.895453e-56 | 2.303575e-53 |
| MsG0380017231.01 | MsG0880045808.01 | 0.832759 | 7.869575e-56 | 8.880549e-53 |
| MsG0380017231.01 | MsG0880045968.01 | -0.808007 | 3.826788e-50 | 2.163346e-47 |
| MsG0380017231.01 | MsG0880046167.01 | -0.800334 | 1.513263e-48 | 7.027745e-46 |
| MsG0380017231.01 | MsG0880046174.01 | -0.820208 | 7.745779e-53 | 6.089939e-50 |
| MsG0380017231.01 | MsG0880046630.01 | -0.821401 | 4.117573e-53 | 3.346391e-50 |
| MsG0380017231.01 | MsG0880047465.01 | 0.803523 | 3.346880e-49 | 1.685663e-46 |
| MsG0380017231.01 | MsG0880047493.01 | 0.812090 | 5.049920e-51 | 3.180755e-48 |
| MsG0280006884.01 | MsG0380017231.01 | 0.826916 | 2.086660e-54 | 1.984081e-51 |
| MsG0280007653.01 | MsG0380017231.01 | -0.808246 | 3.403351e-50 | 1.936257e-47 |
| MsG0280007786.01 | MsG0380017231.01 | 0.846740 | 1.796832e-59 | 3.123245e-56 |
| MsG0280008328.01 | MsG0380017231.01 | 0.834641 | 2.665186e-56 | 3.181996e-53 |
| MsG0280008407.01 | MsG0380017231.01 | 0.862119 | 6.349349e-64 | 1.838662e-60 |
| MsG0280008820.01 | MsG0380017231.01 | -0.860621 | 1.818224e-63 | 5.001248e-60 |
| MsG0280009008.01 | MsG0380017231.01 | -0.807684 | 4.481759e-50 | 2.512255e-47 |
| MsG0280009241.01 | MsG0380017231.01 | 0.821183 | 4.622757e-53 | 3.734458e-50 |
| MsG0280009742.01 | MsG0380017231.01 | -0.806880 | 6.633578e-50 | 3.641683e-47 |
| MsG0280009864.01 | MsG0380017231.01 | -0.812434 | 4.248913e-51 | 2.701404e-48 |
| MsG0280010142.01 | MsG0380017231.01 | -0.830688 | 2.550298e-55 | 2.706868e-52 |
| MsG0280010296.01 | MsG0380017231.01 | 0.840024 | 1.115173e-57 | 1.568461e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017231.01.T01 | MTR_3g103330 | 94.444 | 108 | 2 | 1 | 1 | 108 | 1 | 104 | 1.09e-69 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCGAGTCAAAGCTCTTC+TGG | 0.318499 | 3:+93822602 | MsG0380017231.01.T01:CDS |
| CGCCATGACGGTGGTGTAGC+TGG | 0.367268 | 3:+93822785 | MsG0380017231.01.T01:CDS |
| GGTTGCAGTGGAAAGCTTGA+TGG | 0.410694 | 3:+93822623 | MsG0380017231.01.T01:CDS |
| TTTACCGGTCCTTCTCCTGC+TGG | 0.444782 | 3:-93822813 | None:intergenic |
| GCAGGAGAAGGACCGGTAAA+GGG | 0.444911 | 3:+93822816 | MsG0380017231.01.T01:CDS |
| AGCAGGAGAAGGACCGGTAA+AGG | 0.449501 | 3:+93822815 | MsG0380017231.01.T01:CDS |
| GAAACCACTGCAGGTGGAAG+AGG | 0.474000 | 3:-93822555 | None:intergenic |
| TTCATCTAGATCATTGTTCG+TGG | 0.475117 | 3:-93822856 | None:intergenic |
| GAACATCAATGGCAACTCAT+TGG | 0.481610 | 3:-93822747 | None:intergenic |
| GTTGATCAATGGTGTCACTA+TGG | 0.489333 | 3:+93822658 | MsG0380017231.01.T01:CDS |
| GTGTAGCTGGTTCCACCAGC+AGG | 0.495334 | 3:+93822798 | MsG0380017231.01.T01:CDS |
| ACCGGTCCTTCTCCTGCTGG+TGG | 0.523534 | 3:-93822810 | None:intergenic |
| TTACCATCGTTGAACATCAA+TGG | 0.525954 | 3:-93822758 | None:intergenic |
| ATCTTCTCCATCTTCTTCTG+TGG | 0.543326 | 3:-93822723 | None:intergenic |
| ACTACCTCTTCCACCTGCAG+TGG | 0.560557 | 3:+93822551 | MsG0380017231.01.T01:CDS |
| CAAAGCTCTTCTGGTTGCAG+TGG | 0.566167 | 3:+93822611 | MsG0380017231.01.T01:CDS |
| TCCACCAGCAGGAGAAGGAC+CGG | 0.569119 | 3:+93822809 | MsG0380017231.01.T01:CDS |
| CGCATCGCCACAGAAGAAGA+TGG | 0.574444 | 3:+93822716 | MsG0380017231.01.T01:CDS |
| CTGGTTCCACCAGCAGGAGA+AGG | 0.578852 | 3:+93822804 | MsG0380017231.01.T01:CDS |
| TCGAAGTATTCGATGATGAT+CGG | 0.586920 | 3:-93822586 | None:intergenic |
| GTAGCTATGTGGTTGATCAA+TGG | 0.596285 | 3:+93822647 | MsG0380017231.01.T01:CDS |
| GAAGTTGAAGAAACCACTGC+AGG | 0.609331 | 3:-93822564 | None:intergenic |
| GTTGAAGAAACCACTGCAGG+TGG | 0.625992 | 3:-93822561 | None:intergenic |
| GGTAATCTCCGCCATGACGG+TGG | 0.628227 | 3:+93822776 | MsG0380017231.01.T01:CDS |
| AACCAGCTACACCACCGTCA+TGG | 0.629069 | 3:-93822787 | None:intergenic |
| GATGGTAATCTCCGCCATGA+CGG | 0.678032 | 3:+93822773 | MsG0380017231.01.T01:CDS |
| AGCTTGATGGAGTAGCTATG+TGG | 0.699449 | 3:+93822636 | MsG0380017231.01.T01:CDS |
| CAGCTACACCACCGTCATGG+CGG | 0.723788 | 3:-93822784 | None:intergenic |
| TTGCCATTGATGTTCAACGA+TGG | 0.744804 | 3:+93822755 | MsG0380017231.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTACCATCGTTGAACATCAA+TGG | - | Chr3:93822761-93822780 | None:intergenic | 35.0% | |
| ! | TACACTTTTCTTCCCTTTAC+CGG | - | Chr3:93822831-93822850 | None:intergenic | 35.0% |
| ! | TCGAAGTATTCGATGATGAT+CGG | - | Chr3:93822589-93822608 | None:intergenic | 35.0% |
| ATCTTCTCCATCTTCTTCTG+TGG | - | Chr3:93822726-93822745 | None:intergenic | 40.0% | |
| GAACATCAATGGCAACTCAT+TGG | - | Chr3:93822750-93822769 | None:intergenic | 40.0% | |
| GTAGCTATGTGGTTGATCAA+TGG | + | Chr3:93822647-93822666 | MsG0380017231.01.T01:CDS | 40.0% | |
| TTGCCATTGATGTTCAACGA+TGG | + | Chr3:93822755-93822774 | MsG0380017231.01.T01:CDS | 40.0% | |
| !! | GTTGATCAATGGTGTCACTA+TGG | + | Chr3:93822658-93822677 | MsG0380017231.01.T01:CDS | 40.0% |
| ACTTCGAGTCAAAGCTCTTC+TGG | + | Chr3:93822602-93822621 | MsG0380017231.01.T01:CDS | 45.0% | |
| AGCTTGATGGAGTAGCTATG+TGG | + | Chr3:93822636-93822655 | MsG0380017231.01.T01:CDS | 45.0% | |
| GAAGTTGAAGAAACCACTGC+AGG | - | Chr3:93822567-93822586 | None:intergenic | 45.0% | |
| GATGGTAATCTCCGCCATGA+CGG | + | Chr3:93822773-93822792 | MsG0380017231.01.T01:CDS | 50.0% | |
| GGTTGCAGTGGAAAGCTTGA+TGG | + | Chr3:93822623-93822642 | MsG0380017231.01.T01:CDS | 50.0% | |
| GTTGAAGAAACCACTGCAGG+TGG | - | Chr3:93822564-93822583 | None:intergenic | 50.0% | |
| ! | CAAAGCTCTTCTGGTTGCAG+TGG | + | Chr3:93822611-93822630 | MsG0380017231.01.T01:CDS | 50.0% |
| AACCAGCTACACCACCGTCA+TGG | - | Chr3:93822790-93822809 | None:intergenic | 55.0% | |
| ACTACCTCTTCCACCTGCAG+TGG | + | Chr3:93822551-93822570 | MsG0380017231.01.T01:CDS | 55.0% | |
| AGCAGGAGAAGGACCGGTAA+AGG | + | Chr3:93822815-93822834 | MsG0380017231.01.T01:CDS | 55.0% | |
| CGCATCGCCACAGAAGAAGA+TGG | + | Chr3:93822716-93822735 | MsG0380017231.01.T01:CDS | 55.0% | |
| GAAACCACTGCAGGTGGAAG+AGG | - | Chr3:93822558-93822577 | None:intergenic | 55.0% | |
| GCAGGAGAAGGACCGGTAAA+GGG | + | Chr3:93822816-93822835 | MsG0380017231.01.T01:CDS | 55.0% | |
| TTTACCGGTCCTTCTCCTGC+TGG | - | Chr3:93822816-93822835 | None:intergenic | 55.0% | |
| CAGCTACACCACCGTCATGG+CGG | - | Chr3:93822787-93822806 | None:intergenic | 60.0% | |
| CTGGTTCCACCAGCAGGAGA+AGG | + | Chr3:93822804-93822823 | MsG0380017231.01.T01:CDS | 60.0% | |
| GGTAATCTCCGCCATGACGG+TGG | + | Chr3:93822776-93822795 | MsG0380017231.01.T01:CDS | 60.0% | |
| TCCACCAGCAGGAGAAGGAC+CGG | + | Chr3:93822809-93822828 | MsG0380017231.01.T01:CDS | 60.0% | |
| ! | GTGTAGCTGGTTCCACCAGC+AGG | + | Chr3:93822798-93822817 | MsG0380017231.01.T01:CDS | 60.0% |
| ACCGGTCCTTCTCCTGCTGG+TGG | - | Chr3:93822813-93822832 | None:intergenic | 65.0% | |
| CGCCATGACGGTGGTGTAGC+TGG | + | Chr3:93822785-93822804 | MsG0380017231.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 93822542 | 93822868 | 93822542 | ID=MsG0380017231.01;Name=MsG0380017231.01 |
| Chr3 | mRNA | 93822542 | 93822868 | 93822542 | ID=MsG0380017231.01.T01;Parent=MsG0380017231.01;Name=MsG0380017231.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|108 |
| Chr3 | exon | 93822542 | 93822868 | 93822542 | ID=MsG0380017231.01.T01:exon:1442;Parent=MsG0380017231.01.T01 |
| Chr3 | CDS | 93822542 | 93822868 | 93822542 | ID=MsG0380017231.01.T01:cds;Parent=MsG0380017231.01.T01 |
| Gene Sequence |
| Protein sequence |
