AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034833.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034833.01.T01 MTR_5g013620 59.259 270 87 3 78 325 89 357 8.19e-115 343
MsG0680034833.01.T01 MTR_5g013640 58.394 274 91 3 74 325 83 355 1.13e-114 343
MsG0680034833.01.T01 MTR_6g477770 94.118 170 9 1 1 170 30 198 3.75e-114 329
MsG0680034833.01.T01 MTR_4g099110 60.370 270 84 3 78 325 78 346 3.50e-111 334
MsG0680034833.01.T01 MTR_6g477780 76.720 189 22 2 169 335 9 197 7.48e-98 295
MsG0680034833.01.T01 MTR_4g045667 49.818 275 111 5 78 329 13 283 5.10e-86 268
MsG0680034833.01.T01 MTR_8g099775 46.570 277 123 4 72 324 73 348 5.72e-80 254
MsG0680034833.01.T01 MTR_2g089030 46.182 275 121 5 78 329 86 356 1.82e-76 246
MsG0680034833.01.T01 MTR_7g077410 45.588 272 122 5 78 326 265 533 1.30e-75 246
MsG0680034833.01.T01 MTR_2g020240 39.437 284 142 6 67 326 71 348 1.82e-60 202
MsG0680034833.01.T01 MTR_5g026210 36.727 275 148 5 78 329 218 489 2.59e-60 202
MsG0680034833.01.T01 MTR_5g026210 36.727 275 148 5 78 329 218 489 4.29e-59 201
MsG0680034833.01.T01 MTR_5g026210 35.246 244 133 4 78 298 218 459 9.15e-50 173
MsG0680034833.01.T01 MTR_2g020240 38.073 218 107 4 131 326 2 213 2.19e-40 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034833.01.T01 AT3G23920 65.373 335 68 7 29 327 55 377 1.53e-148 431
MsG0680034833.01.T01 AT4G17090 58.484 277 92 3 73 327 81 356 4.60e-115 344
MsG0680034833.01.T01 AT4G15210 47.826 276 116 6 78 329 14 285 2.04e-81 254
MsG0680034833.01.T01 AT4G15210 47.826 276 116 6 78 329 14 285 7.51e-81 254
MsG0680034833.01.T01 AT4G00490 47.273 275 119 5 78 329 95 366 1.04e-80 256
MsG0680034833.01.T01 AT2G45880 38.857 350 179 7 8 325 169 515 4.53e-74 242
MsG0680034833.01.T01 AT4G15210 48.729 236 94 5 117 329 1 232 3.53e-71 228
MsG0680034833.01.T01 AT4G15210 48.729 236 94 5 117 329 1 232 3.53e-71 228
MsG0680034833.01.T01 AT2G32290 44.727 275 126 5 78 329 78 349 3.78e-70 229
MsG0680034833.01.T01 AT5G45300 37.742 310 167 6 43 329 220 526 2.61e-63 213
MsG0680034833.01.T01 AT5G45300 37.742 310 167 6 43 329 234 540 2.62e-63 213
MsG0680034833.01.T01 AT5G45300 37.742 310 167 6 43 329 218 524 2.72e-63 213
MsG0680034833.01.T01 AT5G55700 39.051 274 141 3 78 325 92 365 1.95e-61 205
MsG0680034833.01.T01 AT5G18670 37.162 296 154 7 53 326 63 348 4.09e-55 188
MsG0680034833.01.T01 AT5G55700 39.506 162 76 2 186 325 41 202 1.03e-32 125

Find 116 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAATTCTTTCCAGTTTA+TGG 0.054461 6:+95152912 MsG0680034833.01.T01:five_prime_UTR
ACAGTATTCCTTTGCCTAAA+TGG 0.157001 6:+95156922 MsG0680034833.01.T01:intron
AGAAGCCTGGTGAGTATAAT+TGG 0.217917 6:+95153398 MsG0680034833.01.T01:CDS
CCATACTGCTGCTGCATTCA+TGG 0.286661 6:-95153014 None:intergenic
GTATAATTGGGGTGGGTATA+TGG 0.301068 6:+95153411 MsG0680034833.01.T01:CDS
ACATGGAAATTTCCAGGAAT+TGG 0.341223 6:+95158117 MsG0680034833.01.T01:CDS
GGATGTGTGGTGGGGATTGG+TGG 0.355464 6:+95153369 MsG0680034833.01.T01:CDS
CGCCATAAACTGGAAAGAAT+TGG 0.364726 6:-95152914 None:intergenic
TCATGTTCAACGCCATAAAC+TGG 0.367097 6:-95152924 None:intergenic
CCATCATACCCAGAGCAAAA+TGG 0.368048 6:+95158093 MsG0680034833.01.T01:CDS
CCCAGCCTCCACCTTCTTTG+CGG 0.369282 6:-95158397 None:intergenic
GATGGATGTGTGGTGGGGAT+TGG 0.370189 6:+95153366 MsG0680034833.01.T01:CDS
CATTGGAAAGCACCAATTCC+TGG 0.375697 6:-95158129 None:intergenic
GGGTGGGTATATGGAGCTTA+TGG 0.377375 6:+95153420 MsG0680034833.01.T01:CDS
CAGTATTCCTTTGCCTAAAT+GGG 0.383419 6:+95156923 MsG0680034833.01.T01:intron
AATGGAACATGGAAATTTCC+AGG 0.389794 6:+95158111 MsG0680034833.01.T01:CDS
GCATTCATGGAGGCTGTTGT+TGG 0.393853 6:-95153001 None:intergenic
TGTCAGATCTGGTCTGATTC+CGG 0.395304 6:-95153143 None:intergenic
CGATCAGATGTTATTGAAAA+CGG 0.410157 6:+95153073 MsG0680034833.01.T01:CDS
GAAGCCTGGTGAGTATAATT+GGG 0.415706 6:+95153399 MsG0680034833.01.T01:CDS
CCATGAATGCAGCAGCAGTA+TGG 0.416462 6:+95153014 MsG0680034833.01.T01:exon
TCCGCAAAGAAGGTGGAGGC+TGG 0.418382 6:+95158396 MsG0680034833.01.T01:CDS
GAAACATGGGCTTAAAGTTC+AGG 0.423360 6:+95153453 MsG0680034833.01.T01:CDS
ATCTCTTCTACAGCCCATTT+AGG 0.424994 6:-95156936 None:intergenic
TGCTTTCCAATGCTATGATA+AGG 0.433740 6:+95158140 MsG0680034833.01.T01:CDS
AAATCAGAATAACATTGAAC+TGG 0.433909 6:-95157061 None:intergenic
TGCTGCAAATAAGTCAGAAT+GGG 0.436619 6:+95158313 MsG0680034833.01.T01:CDS
ATCTTGCATATACTGATCAA+TGG 0.440751 6:+95156973 MsG0680034833.01.T01:CDS
CTCTGTTGATGTTGATCAAT+CGG 0.458092 6:-95152978 None:intergenic
GGAGGCTGGGACAGCGAATA+CGG 0.462609 6:+95158410 MsG0680034833.01.T01:CDS
TCACAAGCCGATGTCAGATC+TGG 0.465088 6:-95153154 None:intergenic
TGTGGTGGGGATTGGTGGAG+AGG 0.469171 6:+95153374 MsG0680034833.01.T01:CDS
CCATGTAGATCACCGGTACT+AGG 0.470928 6:+95153115 MsG0680034833.01.T01:CDS
CAGCTGGTCCCATTCCAACT+TGG 0.473994 6:-95158056 None:intergenic
TCTTGCATATACTGATCAAT+GGG 0.474079 6:+95156974 MsG0680034833.01.T01:CDS
GTATATGGAGCTTATGGAAA+TGG 0.474821 6:+95153426 MsG0680034833.01.T01:CDS
TGACAACGTAGATTCGTTGC+TGG 0.475188 6:-95153043 None:intergenic
GAAAGAGAAGAGTGGAGTCC+CGG 0.475379 6:+95153231 MsG0680034833.01.T01:CDS
CGATGGGGAATGGTGTGAAT+AGG 0.476334 6:+95153284 MsG0680034833.01.T01:CDS
TCAGGAAATCCAAGTTGGAA+TGG 0.481275 6:+95158047 MsG0680034833.01.T01:intron
CAGGAAATCCAAGTTGGAAT+GGG 0.489983 6:+95158048 MsG0680034833.01.T01:intron
ATGCTGCAAATAAGTCAGAA+TGG 0.494454 6:+95158312 MsG0680034833.01.T01:CDS
AGTGATGATGGATGTGTGGT+GGG 0.497742 6:+95153360 MsG0680034833.01.T01:CDS
TGATCAGTATATGCAAGATC+AGG 0.500092 6:-95156969 None:intergenic
TATATACCTTATCATAGCAT+TGG 0.501002 6:-95158146 None:intergenic
CCACTTAGTGGGATAAGGCT+TGG 0.501997 6:-95158520 None:intergenic
ATGGAAATGGCGAAGAAACA+TGG 0.502805 6:+95153439 MsG0680034833.01.T01:CDS
TGATACTTTGCCTGTACTCA+AGG 0.503517 6:+95157030 MsG0680034833.01.T01:CDS
CGACCCCACTTAGTGGGATA+AGG 0.504780 6:-95158525 None:intergenic
ATGCAGGCGAGTACAACAAC+TGG 0.506508 6:+95158354 MsG0680034833.01.T01:CDS
GGCGGTGAATGCGGCGATGG+CGG 0.508042 6:+95153312 MsG0680034833.01.T01:CDS
TCACCGGTACTAGGCGGTAC+CGG 0.516327 6:+95153124 MsG0680034833.01.T01:CDS
AGCACGGGACCTACTGATGC+AGG 0.516356 6:+95158338 MsG0680034833.01.T01:CDS
CCGCAAAGAAGGTGGAGGCT+GGG 0.520804 6:+95158397 MsG0680034833.01.T01:CDS
CCTAGTACCGGTGATCTACA+TGG 0.521570 6:-95153115 None:intergenic
CAAGTTGGAATGGGACCAGC+TGG 0.527927 6:+95158057 MsG0680034833.01.T01:CDS
GTGGTGGGGATTGGTGGAGA+GGG 0.528829 6:+95153375 MsG0680034833.01.T01:CDS
ATGGCGGCGTTGAAGAGTGC+TGG 0.533527 6:+95153328 MsG0680034833.01.T01:CDS
TTGGTGGAGAGGGAGAAGCC+TGG 0.534866 6:+95153385 MsG0680034833.01.T01:CDS
GTGGAGAATGAGTTTGTAGC+TGG 0.535437 6:+95153196 MsG0680034833.01.T01:CDS
ACAATTCAGGAAATCCAAGT+TGG 0.536611 6:+95158042 MsG0680034833.01.T01:intron
AAGTCAGAATGGGGAAGCAC+GGG 0.538635 6:+95158323 MsG0680034833.01.T01:CDS
GAAGGCGGTGAATGCGGCGA+TGG 0.541273 6:+95153309 MsG0680034833.01.T01:CDS
GGACTTCTGCCCTTGAGTAC+AGG 0.542076 6:-95157040 None:intergenic
TAAGTCAGAATGGGGAAGCA+CGG 0.547960 6:+95158322 MsG0680034833.01.T01:CDS
TTGTACTCGCCTGCATCAGT+AGG 0.553154 6:-95158347 None:intergenic
TGTTGAGAATCCTCTCACCA+TGG 0.553564 6:-95158472 None:intergenic
TCTACAGCCCATTTAGGCAA+AGG 0.553791 6:-95156930 None:intergenic
CCACCCCAATTATACTCACC+AGG 0.555298 6:-95153403 None:intergenic
GAGTGATGATGGATGTGTGG+TGG 0.559475 6:+95153359 MsG0680034833.01.T01:CDS
TTGAAGAGTGCTGGTGTGGA+AGG 0.559557 6:+95153337 MsG0680034833.01.T01:CDS
TAAATGGGCTGTAGAAGAGA+TGG 0.559568 6:+95156938 MsG0680034833.01.T01:CDS
CCGTTAGATAGTGTGACGAT+GGG 0.559999 6:+95153268 MsG0680034833.01.T01:CDS
TGGTGTGGAAGGAGTGATGA+TGG 0.566773 6:+95153348 MsG0680034833.01.T01:CDS
TATATGTTGAGTAGCTTACA+AGG 0.568221 6:+95158281 MsG0680034833.01.T01:CDS
AACGGCATCATCACATACAC+CGG 0.568607 6:-95153250 None:intergenic
AAGACGAAGAAAGAGAAGAG+TGG 0.571594 6:+95153223 MsG0680034833.01.T01:CDS
GATAGTGTGACGATGGGGAA+TGG 0.572327 6:+95153274 MsG0680034833.01.T01:CDS
GAATGGTGTGAATAGGAAGA+AGG 0.585955 6:+95153291 MsG0680034833.01.T01:CDS
TAGGAAGAAGGCGGTGAATG+CGG 0.592720 6:+95153303 MsG0680034833.01.T01:CDS
CCTGGTGAGTATAATTGGGG+TGG 0.594831 6:+95153403 MsG0680034833.01.T01:CDS
GGGTAACGTAGCTCACCAGC+TGG 0.600107 6:-95158072 None:intergenic
GCGTTGAACATGACTCAGAT+TGG 0.600231 6:+95152934 MsG0680034833.01.T01:five_prime_UTR
AGCATTAACGAAGGATGTGG+TGG 0.611028 6:+95153177 MsG0680034833.01.T01:CDS
ATGTTGATCAATCGGTATCG+TGG 0.615110 6:-95152970 None:intergenic
TGGAAATGGCGAAGAAACAT+GGG 0.616259 6:+95153440 MsG0680034833.01.T01:CDS
GGCGTTGAAGAGTGCTGGTG+TGG 0.620252 6:+95153333 MsG0680034833.01.T01:CDS
ATTCCGGTACCGCCTAGTAC+CGG 0.620672 6:-95153127 None:intergenic
CTGGTGAGTATAATTGGGGT+GGG 0.620812 6:+95153404 MsG0680034833.01.T01:CDS
TGTAGCCGACCCCACTTAGT+GGG 0.623805 6:-95158531 None:intergenic
CCCATCGTCACACTATCTAA+CGG 0.626379 6:-95153268 None:intergenic
CATCAATGTGGTGGTAACGT+TGG 0.629470 6:+95153490 MsG0680034833.01.T01:CDS
ACCCAGAGCAAAATGGAACA+TGG 0.629658 6:+95158100 MsG0680034833.01.T01:CDS
TGAAGCATTAACGAAGGATG+TGG 0.632432 6:+95153174 MsG0680034833.01.T01:CDS
GCCGTTAGATAGTGTGACGA+TGG 0.634294 6:+95153267 MsG0680034833.01.T01:CDS
GGTGATCTACATGGACTCAT+CGG 0.635099 6:-95153106 None:intergenic
GATACTTTGCCTGTACTCAA+GGG 0.637847 6:+95157031 MsG0680034833.01.T01:CDS
TGGTGTGAATAGGAAGAAGG+CGG 0.638590 6:+95153294 MsG0680034833.01.T01:CDS
AAGGAGTGATGATGGATGTG+TGG 0.646681 6:+95153356 MsG0680034833.01.T01:CDS
GTGATGATGGATGTGTGGTG+GGG 0.648363 6:+95153361 MsG0680034833.01.T01:CDS
TGCTGTTGAACCATGGTGAG+AGG 0.654830 6:+95158462 MsG0680034833.01.T01:CDS
AAGCCTGGTGAGTATAATTG+GGG 0.655599 6:+95153400 MsG0680034833.01.T01:CDS
CGTTAGATAGTGTGACGATG+GGG 0.657639 6:+95153269 MsG0680034833.01.T01:CDS
GATGAGTCCATGTAGATCAC+CGG 0.658163 6:+95153108 MsG0680034833.01.T01:CDS
ACATGGGCTTAAAGTTCAGG+CGG 0.658601 6:+95153456 MsG0680034833.01.T01:CDS
GAGAATGAGTTTGTAGCTGG+AGG 0.658872 6:+95153199 MsG0680034833.01.T01:CDS
TACTGCTGCTGCATTCATGG+AGG 0.660989 6:-95153011 None:intergenic
TCTCAAATGCTGTTGAACCA+TGG 0.663371 6:+95158455 MsG0680034833.01.T01:CDS
ACGGCATCATCACATACACC+GGG 0.665787 6:-95153249 None:intergenic
GCTGCAAATAAGTCAGAATG+GGG 0.678531 6:+95158314 MsG0680034833.01.T01:CDS
GGCTTGTGAAGCATTAACGA+AGG 0.686060 6:+95153168 MsG0680034833.01.T01:CDS
AATCAGACCAGATCTGACAT+CGG 0.690093 6:+95153147 MsG0680034833.01.T01:CDS
GCATTTGAGAGTACCATGTG+AGG 0.694448 6:-95158442 None:intergenic
GATCTACATGGACTCATCGG+CGG 0.721477 6:-95153103 None:intergenic
CTTGCATATACTGATCAATG+GGG 0.723447 6:+95156975 MsG0680034833.01.T01:CDS
TGTAGATCACCGGTACTAGG+CGG 0.762276 6:+95153118 MsG0680034833.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTAATTTTAATTTTA+AGG + Chr6:95154419-95154438 MsG0680034833.01.T01:intron 0.0%
!! TAAAAAAAAAGTAAAAAAGA+TGG + Chr6:95157594-95157613 MsG0680034833.01.T01:intron 10.0%
!!! AAAAAACAAAAAAAGTATTT+TGG - Chr6:95154759-95154778 None:intergenic 10.0%
!!! AAAAACAAAAAAAGTATTTT+GGG - Chr6:95154758-95154777 None:intergenic 10.0%
!!! ATAATTTGTAAATAAAGAAT+AGG - Chr6:95155655-95155674 None:intergenic 10.0%
!!! ATGTACAAAAATTTAAATTT+TGG - Chr6:95154966-95154985 None:intergenic 10.0%
!!! ATTAAGTTTTTTTTTTTTGA+AGG - Chr6:95155091-95155110 None:intergenic 10.0%
!!! ATTATTAGTTTAATTGATAA+TGG + Chr6:95153916-95153935 MsG0680034833.01.T01:intron 10.0%
!!! CATTTTAAAACAATTTTTTT+TGG + Chr6:95153822-95153841 MsG0680034833.01.T01:intron 10.0%
!!! TACAAATTTTTTTTTTTTGT+TGG - Chr6:95155814-95155833 None:intergenic 10.0%
!!! TAGTTTTAATAGTAATATTT+TGG + Chr6:95153719-95153738 MsG0680034833.01.T01:intron 10.0%
!!! TATTCTTTATTTACAAATTA+TGG + Chr6:95155654-95155673 MsG0680034833.01.T01:intron 10.0%
!!! TGTACAAAAATTTAAATTTT+GGG - Chr6:95154965-95154984 None:intergenic 10.0%
!!! TTTATTTTGATAAACAAAAT+GGG - Chr6:95154654-95154673 None:intergenic 10.0%
!!! TTTTATTTTGATAAACAAAA+TGG - Chr6:95154655-95154674 None:intergenic 10.0%
!! AAATAAAAAGTAAAACAAGA+TGG + Chr6:95157243-95157262 MsG0680034833.01.T01:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG + Chr6:95153695-95153714 MsG0680034833.01.T01:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - Chr6:95153696-95153715 None:intergenic 15.0%
!! ACAAATTGATATTGATATAT+TGG - Chr6:95156627-95156646 None:intergenic 15.0%
!! CAAATTGATATTGATATATT+GGG - Chr6:95156626-95156645 None:intergenic 15.0%
!!! AAATATTTTCAATGTTACTA+TGG - Chr6:95154498-95154517 None:intergenic 15.0%
!!! AAATTTTTTTTTTTTGTTGG+TGG - Chr6:95155811-95155830 None:intergenic 15.0%
!!! AATCAAACAAATTTGATTTA+AGG + Chr6:95154577-95154596 MsG0680034833.01.T01:intron 15.0%
!!! AATTTGAGTTTTAGTATTTT+TGG + Chr6:95155123-95155142 MsG0680034833.01.T01:intron 15.0%
!!! ACTTGATGTTTTTTATATTA+TGG + Chr6:95157883-95157902 MsG0680034833.01.T01:intron 15.0%
!!! ATTCTTAATTAAAATTTTGC+AGG - Chr6:95155033-95155052 None:intergenic 15.0%
!!! GATTATTTTAATTCTAAAAG+AGG - Chr6:95153548-95153567 None:intergenic 15.0%
!!! GTACAAAAATTTAAATTTTG+GGG - Chr6:95154964-95154983 None:intergenic 15.0%
!!! TTCTTAATTAAAATTTTGCA+GGG - Chr6:95155032-95155051 None:intergenic 15.0%
!!! TTTTGTATAAAATTGTTTGT+AGG + Chr6:95154373-95154392 MsG0680034833.01.T01:intron 15.0%
!!! TTTTGTTTTTTTAGTTTTGA+AGG + Chr6:95154768-95154787 MsG0680034833.01.T01:intron 15.0%
!!! TTTTTGTATTCAATTTTGAA+TGG - Chr6:95155239-95155258 None:intergenic 15.0%
!! AAAATTGATCGTATCATATT+TGG - Chr6:95155193-95155212 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - Chr6:95153705-95153724 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + Chr6:95153782-95153801 MsG0680034833.01.T01:intron 20.0%
!! ATAGTAAAAACAACGTATAA+TGG - Chr6:95157165-95157184 None:intergenic 20.0%
!! TAAATTGTGATTATGATTTG+TGG + Chr6:95154608-95154627 MsG0680034833.01.T01:intron 20.0%
!! TAACAAAAGTTGTCATAAAA+TGG - Chr6:95155568-95155587 None:intergenic 20.0%
!! TATGTGTTAATGAGTTTAAA+TGG + Chr6:95156321-95156340 MsG0680034833.01.T01:intron 20.0%
!! TGTAAATAAAGAATAGGTAT+TGG - Chr6:95155649-95155668 None:intergenic 20.0%
!! TTTCTTCAAAAGAAGAAAAA+AGG + Chr6:95156433-95156452 MsG0680034833.01.T01:intron 20.0%
!!! AAAAAATGTTTTAGACACAT+AGG + Chr6:95155369-95155388 MsG0680034833.01.T01:intron 20.0%
!!! AAAAATGTTTTTAATGTGTG+TGG + Chr6:95155885-95155904 MsG0680034833.01.T01:intron 20.0%
!!! AAATTTTGAATATTTGTCAC+TGG + Chr6:95157004-95157023 MsG0680034833.01.T01:CDS 20.0%
!!! ACACTAGTTTCTTTTATATT+TGG + Chr6:95155299-95155318 MsG0680034833.01.T01:intron 20.0%
!!! ATAGTGTCTTATCTATTTTT+TGG + Chr6:95154938-95154957 MsG0680034833.01.T01:intron 20.0%
!!! ATCTCTAAAAAGATTAAAAC+CGG + Chr6:95154984-95155003 MsG0680034833.01.T01:intron 20.0%
!!! ATTGATTCTAACTTAAAGTT+AGG - Chr6:95157496-95157515 None:intergenic 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - Chr6:95156855-95156874 None:intergenic 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG + Chr6:95156828-95156847 MsG0680034833.01.T01:intron 20.0%
!!! TTTGGACATGTATTTTAAAA+CGG - Chr6:95154090-95154109 None:intergenic 20.0%
!!! TTTTCTATTTCTAAATTTGC+AGG - Chr6:95157195-95157214 None:intergenic 20.0%
! AAAATACAAACTAGTTGCAT+TGG - Chr6:95155424-95155443 None:intergenic 25.0%
! AAATACAAACTAGTTGCATT+GGG - Chr6:95155423-95155442 None:intergenic 25.0%
! AAATCAGAATAACATTGAAC+TGG - Chr6:95157064-95157083 None:intergenic 25.0%
! ATAGTGCACATTGTAAAAAT+TGG + Chr6:95154293-95154312 MsG0680034833.01.T01:intron 25.0%
! ATCCTTTAATTGACAACTTA+TGG - Chr6:95155686-95155705 None:intergenic 25.0%
! CAGTTTCATAAAGTTACTAT+TGG + Chr6:95156208-95156227 MsG0680034833.01.T01:intron 25.0%
! CCAATTTAATACTACCAATT+TGG + Chr6:95155394-95155413 MsG0680034833.01.T01:intron 25.0%
! CGTATAATGGTAAAATGAAT+TGG - Chr6:95157152-95157171 None:intergenic 25.0%
! GAAAACAAAGTAAAACAAGA+TGG + Chr6:95157210-95157229 MsG0680034833.01.T01:intron 25.0%
! TACAAAAGAAAGAGTTCAAA+AGG - Chr6:95158200-95158219 None:intergenic 25.0%
! TATATACCTTATCATAGCAT+TGG - Chr6:95158149-95158168 None:intergenic 25.0%
! TATGGACAATGCATAATATA+TGG + Chr6:95155762-95155781 MsG0680034833.01.T01:intron 25.0%
! TCCTTTAATTGACAACTTAT+GGG - Chr6:95155685-95155704 None:intergenic 25.0%
! TGAAATCTGTGAAATCAATT+TGG + Chr6:95157291-95157310 MsG0680034833.01.T01:intron 25.0%
! TTATAGTCACAAAACGTATA+AGG - Chr6:95154054-95154073 None:intergenic 25.0%
!! CCAAATTGGTAGTATTAAAT+TGG - Chr6:95155397-95155416 None:intergenic 25.0%
!! TCTCTAAAAAGATTAAAACC+GGG + Chr6:95154985-95155004 MsG0680034833.01.T01:intron 25.0%
!!! ATGAGTCTTACTTTTATTTG+TGG + Chr6:95156471-95156490 MsG0680034833.01.T01:intron 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG + Chr6:95154311-95154330 MsG0680034833.01.T01:intron 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG - Chr6:95156856-95156875 None:intergenic 25.0%
!!! TTAGTGTTGTTTTACTTTGT+TGG - Chr6:95152838-95152857 None:intergenic 25.0%
AAAAAAATCACTCATCACTC+TGG - Chr6:95154904-95154923 None:intergenic 30.0%
AAGAAAAAGTAGTTGGAACT+TGG + Chr6:95156027-95156046 MsG0680034833.01.T01:intron 30.0%
AAGAGACTAAAACGAAAAGT+TGG - Chr6:95156868-95156887 None:intergenic 30.0%
ACTATCTATGTTGAGATTAG+TGG + Chr6:95156599-95156618 MsG0680034833.01.T01:intron 30.0%
AGTTGAAATGACGATGAATT+TGG + Chr6:95157334-95157353 MsG0680034833.01.T01:intron 30.0%
ATAATGGCTAAGATAAGATG+AGG + Chr6:95153932-95153951 MsG0680034833.01.T01:intron 30.0%
ATCTTGCATATACTGATCAA+TGG + Chr6:95156973-95156992 MsG0680034833.01.T01:CDS 30.0%
ATTAACACATACAAGTGAAG+GGG - Chr6:95156312-95156331 None:intergenic 30.0%
CATTAACACATACAAGTGAA+GGG - Chr6:95156313-95156332 None:intergenic 30.0%
CCTTTAATTGACAACTTATG+GGG - Chr6:95155684-95155703 None:intergenic 30.0%
CGAGTTTAATGAAATCACAA+TGG - Chr6:95157412-95157431 None:intergenic 30.0%
CGATCAGATGTTATTGAAAA+CGG + Chr6:95153073-95153092 MsG0680034833.01.T01:CDS 30.0%
CTGTTACACACAACAATAAT+TGG - Chr6:95156906-95156925 None:intergenic 30.0%
CTTCACTAAGAAAAAGTAGT+TGG + Chr6:95156020-95156039 MsG0680034833.01.T01:intron 30.0%
GACAATGCATAATATATGGA+AGG + Chr6:95155766-95155785 MsG0680034833.01.T01:intron 30.0%
GGAGAAAATATTTACCACAA+TGG - Chr6:95157131-95157150 None:intergenic 30.0%
TACTATTTCCCTTAACATGT+TGG - Chr6:95153968-95153987 None:intergenic 30.0%
TATATGTTGAGTAGCTTACA+AGG + Chr6:95158281-95158300 MsG0680034833.01.T01:CDS 30.0%
TCATTAACACATACAAGTGA+AGG - Chr6:95156314-95156333 None:intergenic 30.0%
TCTAATGTGATGTGAGTTTA+AGG + Chr6:95155860-95155879 MsG0680034833.01.T01:intron 30.0%
TCTTGCATATACTGATCAAT+GGG + Chr6:95156974-95156993 MsG0680034833.01.T01:CDS 30.0%
TGCATAATATATGGAAGGTT+CGG + Chr6:95155771-95155790 MsG0680034833.01.T01:intron 30.0%
TGGTATGTAGTGAAAAAGTT+TGG + Chr6:95156491-95156510 MsG0680034833.01.T01:intron 30.0%
TTCCAATTCTTTCCAGTTTA+TGG + Chr6:95152912-95152931 MsG0680034833.01.T01:five_prime_UTR 30.0%
TTTGCATATGCTTCTTAACT+TGG + Chr6:95155971-95155990 MsG0680034833.01.T01:intron 30.0%
! GTTATGTCTTTTCATCAATG+TGG + Chr6:95153478-95153497 MsG0680034833.01.T01:CDS 30.0%
! TCACAATGGCAAAGTAATTT+TGG - Chr6:95157398-95157417 None:intergenic 30.0%
! TTTTAGTCTCTTTTGCCTAT+GGG + Chr6:95156876-95156895 MsG0680034833.01.T01:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG - Chr6:95153613-95153632 None:intergenic 30.0%
!! GTAGAAAGAGAGTGTTATTA+AGG + Chr6:95155266-95155285 MsG0680034833.01.T01:intron 30.0%
!! TGGTTTTGCTTTCTTTTGAA+GGG + Chr6:95155991-95156010 MsG0680034833.01.T01:intron 30.0%
!! TTGTTTTACTTTGTTGGACA+TGG - Chr6:95152832-95152851 None:intergenic 30.0%
!!! GACATGTATTTTAAAACGGA+GGG - Chr6:95154086-95154105 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + Chr6:95153614-95153633 MsG0680034833.01.T01:intron 30.0%
!!! TTGGTTTTGCTTTCTTTTGA+AGG + Chr6:95155990-95156009 MsG0680034833.01.T01:intron 30.0%
!!! TTTTTTTTTTTGTTGGTGGC+CGG - Chr6:95155807-95155826 None:intergenic 30.0%
AAAAGTAGGCCCTTTACTTA+AGG + Chr6:95156525-95156544 MsG0680034833.01.T01:intron 35.0%
AAAGTAGGCCCTTTACTTAA+GGG + Chr6:95156526-95156545 MsG0680034833.01.T01:intron 35.0%
AACTATTCAATGTGCTTCAG+TGG + Chr6:95154835-95154854 MsG0680034833.01.T01:intron 35.0%
AATGGAACATGGAAATTTCC+AGG + Chr6:95158111-95158130 MsG0680034833.01.T01:CDS 35.0%
ACAATAATTGGTAAGCCCAT+AGG - Chr6:95156894-95156913 None:intergenic 35.0%
ACAATTCAGGAAATCCAAGT+TGG + Chr6:95158042-95158061 MsG0680034833.01.T01:intron 35.0%
ACAGTATTCCTTTGCCTAAA+TGG + Chr6:95156922-95156941 MsG0680034833.01.T01:intron 35.0%
ACATGGAAATTTCCAGGAAT+TGG + Chr6:95158117-95158136 MsG0680034833.01.T01:CDS 35.0%
AGAAAGAGTTCAAAAGGATG+AGG - Chr6:95158194-95158213 None:intergenic 35.0%
ATGCTGCAAATAAGTCAGAA+TGG + Chr6:95158312-95158331 MsG0680034833.01.T01:CDS 35.0%
CAGTATTCCTTTGCCTAAAT+GGG + Chr6:95156923-95156942 MsG0680034833.01.T01:intron 35.0%
CATAATATATGGAAGGTTCG+GGG + Chr6:95155773-95155792 MsG0680034833.01.T01:intron 35.0%
CATATGTGAAGTGGTTGATT+TGG - Chr6:95154108-95154127 None:intergenic 35.0%
CATGTTAAGGGAAATAGTAG+AGG + Chr6:95153969-95153988 MsG0680034833.01.T01:intron 35.0%
CCCCATAAGTTGTCAATTAA+AGG + Chr6:95155681-95155700 MsG0680034833.01.T01:intron 35.0%
CTCTGTTGATGTTGATCAAT+CGG - Chr6:95152981-95153000 None:intergenic 35.0%
CTTATACCAAAAACCTTTCC+CGG - Chr6:95155526-95155545 None:intergenic 35.0%
CTTGCATATACTGATCAATG+GGG + Chr6:95156975-95156994 MsG0680034833.01.T01:CDS 35.0%
GAAAGAGTTCAAAAGGATGA+GGG - Chr6:95158193-95158212 None:intergenic 35.0%
GACAATTTCAAACACCTTCT+TGG + Chr6:95157100-95157119 MsG0680034833.01.T01:intron 35.0%
GCATAATATATGGAAGGTTC+GGG + Chr6:95155772-95155791 MsG0680034833.01.T01:intron 35.0%
GTACATTAGCATATGTGAAG+TGG - Chr6:95154117-95154136 None:intergenic 35.0%
GTATATGGAGCTTATGGAAA+TGG + Chr6:95153426-95153445 MsG0680034833.01.T01:CDS 35.0%
GTATTTGCTTACTATGCTAG+TGG + Chr6:95153876-95153895 MsG0680034833.01.T01:intron 35.0%
TAGTCACAAAACGTATAAGG+TGG - Chr6:95154051-95154070 None:intergenic 35.0%
TCATATTTGGCTAACTCTAG+AGG - Chr6:95155180-95155199 None:intergenic 35.0%
TGAGCTTAACTCAATTGGTA+TGG + Chr6:95155744-95155763 MsG0680034833.01.T01:intron 35.0%
TGATCAGTATATGCAAGATC+AGG - Chr6:95156972-95156991 None:intergenic 35.0%
TGCTGCAAATAAGTCAGAAT+GGG + Chr6:95158313-95158332 MsG0680034833.01.T01:CDS 35.0%
TGCTTTCCAATGCTATGATA+AGG + Chr6:95158140-95158159 MsG0680034833.01.T01:CDS 35.0%
TGGTGATAGAACATCAAGTA+AGG - Chr6:95158020-95158039 None:intergenic 35.0%
TTATACCAAAAACCTTTCCC+GGG - Chr6:95155525-95155544 None:intergenic 35.0%
TTCTATCACCATCACAATTC+AGG + Chr6:95158029-95158048 MsG0680034833.01.T01:intron 35.0%
TTGATGTGATTCATGGGAAT+TGG - Chr6:95156562-95156581 None:intergenic 35.0%
TTGGATTTCCTGAATTGTGA+TGG - Chr6:95158040-95158059 None:intergenic 35.0%
! AAGAAGAAAAAAGGCGTGTA+AGG + Chr6:95156442-95156461 MsG0680034833.01.T01:intron 35.0%
! ATGTCTTTTCATCAATGTGG+TGG + Chr6:95153481-95153500 MsG0680034833.01.T01:CDS 35.0%
! GAAAAAGTTTGGTTTCGTGA+TGG + Chr6:95156502-95156521 MsG0680034833.01.T01:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + Chr6:95153744-95153763 MsG0680034833.01.T01:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + Chr6:95153748-95153767 MsG0680034833.01.T01:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + Chr6:95153848-95153867 MsG0680034833.01.T01:intron 35.0%
!! ACATAGATAGTCCACTTTTG+TGG - Chr6:95156590-95156609 None:intergenic 35.0%
!! ACTAACTTTTTCCGCAAAGA+AGG + Chr6:95158386-95158405 MsG0680034833.01.T01:CDS 35.0%
!! GTTTTAGTCTCTTTTGCCTA+TGG + Chr6:95156875-95156894 MsG0680034833.01.T01:intron 35.0%
!! TGATTCATGGGAATTGGTTT+TGG - Chr6:95156556-95156575 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+AGG + Chr6:95154315-95154334 MsG0680034833.01.T01:intron 35.0%
!!! GGACATGTATTTTAAAACGG+AGG - Chr6:95154087-95154106 None:intergenic 35.0%
!!! TTTTTTTTTTGTTGGTGGCC+GGG - Chr6:95155806-95155825 None:intergenic 35.0%
AAAATCACTCATCACTCTGG+TGG - Chr6:95154901-95154920 None:intergenic 40.0%
AAATCACTCATCACTCTGGT+GGG - Chr6:95154900-95154919 None:intergenic 40.0%
AAGACGAAGAAAGAGAAGAG+TGG + Chr6:95153223-95153242 MsG0680034833.01.T01:CDS 40.0%
AAGCCTGGTGAGTATAATTG+GGG + Chr6:95153400-95153419 MsG0680034833.01.T01:CDS 40.0%
AATCAGACCAGATCTGACAT+CGG + Chr6:95153147-95153166 MsG0680034833.01.T01:CDS 40.0%
ACATACAAGTGAAGGGGTTA+GGG - Chr6:95156306-95156325 None:intergenic 40.0%
AGAAGCCTGGTGAGTATAAT+TGG + Chr6:95153398-95153417 MsG0680034833.01.T01:CDS 40.0%
AGCGTTAGCCAACATGTTAA+GGG + Chr6:95153957-95153976 MsG0680034833.01.T01:intron 40.0%
ATCTCTTCTACAGCCCATTT+AGG - Chr6:95156939-95156958 None:intergenic 40.0%
ATGGAAATGGCGAAGAAACA+TGG + Chr6:95153439-95153458 MsG0680034833.01.T01:CDS 40.0%
ATGTTGATCAATCGGTATCG+TGG - Chr6:95152973-95152992 None:intergenic 40.0%
CGCCATAAACTGGAAAGAAT+TGG - Chr6:95152917-95152936 None:intergenic 40.0%
CGGAAAAAGTTAGTGTCTTC+TGG - Chr6:95158380-95158399 None:intergenic 40.0%
GAAACATGGGCTTAAAGTTC+AGG + Chr6:95153453-95153472 MsG0680034833.01.T01:CDS 40.0%
GAAGCCTGGTGAGTATAATT+GGG + Chr6:95153399-95153418 MsG0680034833.01.T01:CDS 40.0%
GAATGGTGTGAATAGGAAGA+AGG + Chr6:95153291-95153310 MsG0680034833.01.T01:CDS 40.0%
GAGGACAGCATACAAAAAAG+AGG - Chr6:95155723-95155742 None:intergenic 40.0%
GATACTTTGCCTGTACTCAA+GGG + Chr6:95157031-95157050 MsG0680034833.01.T01:CDS 40.0%
GCGATGTTGATGTGATTCAT+GGG - Chr6:95156568-95156587 None:intergenic 40.0%
GCTGCAAATAAGTCAGAATG+GGG + Chr6:95158314-95158333 MsG0680034833.01.T01:CDS 40.0%
GTATAATTGGGGTGGGTATA+TGG + Chr6:95153411-95153430 MsG0680034833.01.T01:CDS 40.0%
TAGCGTTAGCCAACATGTTA+AGG + Chr6:95153956-95153975 MsG0680034833.01.T01:intron 40.0%
TATTGTGAGTGTAGGGACTT+CGG + Chr6:95154868-95154887 MsG0680034833.01.T01:intron 40.0%
TCATGTTCAACGCCATAAAC+TGG - Chr6:95152927-95152946 None:intergenic 40.0%
TCTCAAATGCTGTTGAACCA+TGG + Chr6:95158455-95158474 MsG0680034833.01.T01:CDS 40.0%
TGATACTTTGCCTGTACTCA+AGG + Chr6:95157030-95157049 MsG0680034833.01.T01:CDS 40.0%
TGATTTCATGCGTGCTTTCA+GGG + Chr6:95157078-95157097 MsG0680034833.01.T01:intron 40.0%
TGGAAATGGCGAAGAAACAT+GGG + Chr6:95153440-95153459 MsG0680034833.01.T01:CDS 40.0%
TGTGCCTTTACAAAATCCCA+GGG + Chr6:95154676-95154695 MsG0680034833.01.T01:intron 40.0%
TTGGTCTGCCCTTAAGTAAA+GGG - Chr6:95156537-95156556 None:intergenic 40.0%
TTGTGCCTTTACAAAATCCC+AGG + Chr6:95154675-95154694 MsG0680034833.01.T01:intron 40.0%
TTTGGTCTGCCCTTAAGTAA+AGG - Chr6:95156538-95156557 None:intergenic 40.0%
! ACGGTGAATTTTTCCTCACA+TGG + Chr6:95158429-95158448 MsG0680034833.01.T01:CDS 40.0%
! ATGAGCTTGCCATGTGTTTT+GGG + Chr6:95155920-95155939 MsG0680034833.01.T01:intron 40.0%
! CAGGAAATCCAAGTTGGAAT+GGG + Chr6:95158048-95158067 MsG0680034833.01.T01:intron 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + Chr6:95153747-95153766 MsG0680034833.01.T01:intron 40.0%
! TCAGGAAATCCAAGTTGGAA+TGG + Chr6:95158047-95158066 MsG0680034833.01.T01:intron 40.0%
! TCCATGTTCCATTTTGCTCT+GGG - Chr6:95158104-95158123 None:intergenic 40.0%
! TGAAGCATTAACGAAGGATG+TGG + Chr6:95153174-95153193 MsG0680034833.01.T01:CDS 40.0%
! TGGTTTCGTGATGGAAAAGT+AGG + Chr6:95156511-95156530 MsG0680034833.01.T01:intron 40.0%
! TTCCATGTTCCATTTTGCTC+TGG - Chr6:95158105-95158124 None:intergenic 40.0%
!! AACTTTTTCCGCAAAGAAGG+TGG + Chr6:95158389-95158408 MsG0680034833.01.T01:CDS 40.0%
!! CATTTTGCTCTGGGTATGAT+GGG - Chr6:95158095-95158114 None:intergenic 40.0%
!! TAAATGGGCTGTAGAAGAGA+TGG + Chr6:95156938-95156957 MsG0680034833.01.T01:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr6:95153852-95153871 MsG0680034833.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr6:95153871-95153852 None:intergenic 40.0%
!!! TTTTTTTTTGTTGGTGGCCG+GGG - Chr6:95155805-95155824 None:intergenic 40.0%
AACGGCATCATCACATACAC+CGG - Chr6:95153253-95153272 None:intergenic 45.0%
AAGTCCAACCCCAAAACACA+TGG - Chr6:95155932-95155951 None:intergenic 45.0%
ACATGGGCTTAAAGTTCAGG+CGG + Chr6:95153456-95153475 MsG0680034833.01.T01:CDS 45.0%
ACCCAGAGCAAAATGGAACA+TGG + Chr6:95158100-95158119 MsG0680034833.01.T01:CDS 45.0%
AGCATTAACGAAGGATGTGG+TGG + Chr6:95153177-95153196 MsG0680034833.01.T01:CDS 45.0%
CACATACAAGTGAAGGGGTT+AGG - Chr6:95156307-95156326 None:intergenic 45.0%
CATCAACATCGCCACAAAAG+TGG + Chr6:95156576-95156595 MsG0680034833.01.T01:intron 45.0%
CCAATTGAGTTAAGCTCACG+AGG - Chr6:95155742-95155761 None:intergenic 45.0%
CCATCATACCCAGAGCAAAA+TGG + Chr6:95158093-95158112 MsG0680034833.01.T01:CDS 45.0%
CCCATCGTCACACTATCTAA+CGG - Chr6:95153271-95153290 None:intergenic 45.0%
CCGTTAGATAGTGTGACGAT+GGG + Chr6:95153268-95153287 MsG0680034833.01.T01:CDS 45.0%
CCTCGTGAGCTTAACTCAAT+TGG + Chr6:95155739-95155758 MsG0680034833.01.T01:intron 45.0%
CGTTAGATAGTGTGACGATG+GGG + Chr6:95153269-95153288 MsG0680034833.01.T01:CDS 45.0%
CTGATTTCATGCGTGCTTTC+AGG + Chr6:95157077-95157096 MsG0680034833.01.T01:intron 45.0%
CTGGTGAGTATAATTGGGGT+GGG + Chr6:95153404-95153423 MsG0680034833.01.T01:CDS 45.0%
GAGAATGAGTTTGTAGCTGG+AGG + Chr6:95153199-95153218 MsG0680034833.01.T01:CDS 45.0%
GATGAGTCCATGTAGATCAC+CGG + Chr6:95153108-95153127 MsG0680034833.01.T01:CDS 45.0%
GCGTTGAACATGACTCAGAT+TGG + Chr6:95152934-95152953 MsG0680034833.01.T01:five_prime_UTR 45.0%
GGCGATGTTGATGTGATTCA+TGG - Chr6:95156569-95156588 None:intergenic 45.0%
GGCTGTCTCAACAAATTCGT+AGG - Chr6:95155011-95155030 None:intergenic 45.0%
GGTGATCTACATGGACTCAT+CGG - Chr6:95153109-95153128 None:intergenic 45.0%
GTGGAGAATGAGTTTGTAGC+TGG + Chr6:95153196-95153215 MsG0680034833.01.T01:CDS 45.0%
TAAGTCAGAATGGGGAAGCA+CGG + Chr6:95158322-95158341 MsG0680034833.01.T01:CDS 45.0%
TCTACAGCCCATTTAGGCAA+AGG - Chr6:95156933-95156952 None:intergenic 45.0%
TCTCAACAAATTCGTAGGCC+CGG - Chr6:95155006-95155025 None:intergenic 45.0%
TGACAACGTAGATTCGTTGC+TGG - Chr6:95153046-95153065 None:intergenic 45.0%
TGGTGTGAATAGGAAGAAGG+CGG + Chr6:95153294-95153313 MsG0680034833.01.T01:CDS 45.0%
TGTCAGATCTGGTCTGATTC+CGG - Chr6:95153146-95153165 None:intergenic 45.0%
TGTTGAGAATCCTCTCACCA+TGG - Chr6:95158475-95158494 None:intergenic 45.0%
TTCAATGTGCTTCAGTGGCA+CGG + Chr6:95154840-95154859 MsG0680034833.01.T01:intron 45.0%
TTTGATGTCGTATTCCAGCC+CGG + Chr6:95155504-95155523 MsG0680034833.01.T01:intron 45.0%
! CATCAATGTGGTGGTAACGT+TGG + Chr6:95153490-95153509 MsG0680034833.01.T01:CDS 45.0%
! GATGAGCTTGCCATGTGTTT+TGG + Chr6:95155919-95155938 MsG0680034833.01.T01:intron 45.0%
! GGAGGTGTATTGTGAGTGTA+GGG + Chr6:95154861-95154880 MsG0680034833.01.T01:intron 45.0%
! GGCTTGTGAAGCATTAACGA+AGG + Chr6:95153168-95153187 MsG0680034833.01.T01:CDS 45.0%
! GTTGCATTGGGTTGCCAAAT+TGG - Chr6:95155411-95155430 None:intergenic 45.0%
! TGAGCTTGCCATGTGTTTTG+GGG + Chr6:95155921-95155940 MsG0680034833.01.T01:intron 45.0%
! TTTTTCCGCAAAGAAGGTGG+AGG + Chr6:95158392-95158411 MsG0680034833.01.T01:CDS 45.0%
!! AAGGAGTGATGATGGATGTG+TGG + Chr6:95153356-95153375 MsG0680034833.01.T01:CDS 45.0%
!! AGTGATGATGGATGTGTGGT+GGG + Chr6:95153360-95153379 MsG0680034833.01.T01:CDS 45.0%
!! CATTGGAAAGCACCAATTCC+TGG - Chr6:95158132-95158151 None:intergenic 45.0%
!! CCATTTTGCTCTGGGTATGA+TGG - Chr6:95158096-95158115 None:intergenic 45.0%
!! GCATTTGAGAGTACCATGTG+AGG - Chr6:95158445-95158464 None:intergenic 45.0%
!!! ATGTGTTTTGGGGTTGGACT+TGG + Chr6:95155931-95155950 MsG0680034833.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr6:95153851-95153870 MsG0680034833.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr6:95153870-95153851 None:intergenic 45.0%
!! TAGATAATTAAAAATATTAA+CGG - Chr6:95154148-95154167 None:intergenic 5.0%
ACGGCATCATCACATACACC+GGG - Chr6:95153252-95153271 None:intergenic 50.0%
AGAGAGAGAGACTCACGTGA+CGG - Chr6:95153521-95153540 None:intergenic 50.0%
ATGCAGGCGAGTACAACAAC+TGG + Chr6:95158354-95158373 MsG0680034833.01.T01:CDS 50.0%
CAAACCCCGATCACGTTGTT+CGG - Chr6:95156281-95156300 None:intergenic 50.0%
CCACCCCAATTATACTCACC+AGG - Chr6:95153406-95153425 None:intergenic 50.0%
CCATACTGCTGCTGCATTCA+TGG - Chr6:95153017-95153036 None:intergenic 50.0%
CCATGAATGCAGCAGCAGTA+TGG + Chr6:95153014-95153033 MsG0680034833.01.T01:exon 50.0%
CCATGTAGATCACCGGTACT+AGG + Chr6:95153115-95153134 MsG0680034833.01.T01:CDS 50.0%
CCTGGTGAGTATAATTGGGG+TGG + Chr6:95153403-95153422 MsG0680034833.01.T01:CDS 50.0%
CCTTTACAAAATCCCAGGGC+CGG + Chr6:95154680-95154699 MsG0680034833.01.T01:intron 50.0%
CGATGGGGAATGGTGTGAAT+AGG + Chr6:95153284-95153303 MsG0680034833.01.T01:CDS 50.0%
CTAGACCGAACAACGTGATC+GGG + Chr6:95156273-95156292 MsG0680034833.01.T01:intron 50.0%
GAAAGAGAAGAGTGGAGTCC+CGG + Chr6:95153231-95153250 MsG0680034833.01.T01:CDS 50.0%
GATAGTGTGACGATGGGGAA+TGG + Chr6:95153274-95153293 MsG0680034833.01.T01:CDS 50.0%
GATCTACATGGACTCATCGG+CGG - Chr6:95153106-95153125 None:intergenic 50.0%
GCATTCATGGAGGCTGTTGT+TGG - Chr6:95153004-95153023 None:intergenic 50.0%
GCCGTTAGATAGTGTGACGA+TGG + Chr6:95153267-95153286 MsG0680034833.01.T01:CDS 50.0%
GCTAGACCGAACAACGTGAT+CGG + Chr6:95156272-95156291 MsG0680034833.01.T01:intron 50.0%
GGGTGGGTATATGGAGCTTA+TGG + Chr6:95153420-95153439 MsG0680034833.01.T01:CDS 50.0%
TACTGCTGCTGCATTCATGG+AGG - Chr6:95153014-95153033 None:intergenic 50.0%
TAGACCGAACAACGTGATCG+GGG + Chr6:95156274-95156293 MsG0680034833.01.T01:intron 50.0%
TAGGAAGAAGGCGGTGAATG+CGG + Chr6:95153303-95153322 MsG0680034833.01.T01:CDS 50.0%
TCACAAGCCGATGTCAGATC+TGG - Chr6:95153157-95153176 None:intergenic 50.0%
TGCTGTTGAACCATGGTGAG+AGG + Chr6:95158462-95158481 MsG0680034833.01.T01:CDS 50.0%
TGGTGTGGAAGGAGTGATGA+TGG + Chr6:95153348-95153367 MsG0680034833.01.T01:CDS 50.0%
TGTAGATCACCGGTACTAGG+CGG + Chr6:95153118-95153137 MsG0680034833.01.T01:CDS 50.0%
TTGATGTCGTATTCCAGCCC+GGG + Chr6:95155505-95155524 MsG0680034833.01.T01:intron 50.0%
TTGTACTCGCCTGCATCAGT+AGG - Chr6:95158350-95158369 None:intergenic 50.0%
TTTGGGCCCCCAAAAATTCG+AGG - Chr6:95154741-95154760 None:intergenic 50.0%
! AAGTCAGAATGGGGAAGCAC+GGG + Chr6:95158323-95158342 MsG0680034833.01.T01:CDS 50.0%
! CACTGGGCCTCGAATTTTTG+GGG + Chr6:95154731-95154750 MsG0680034833.01.T01:intron 50.0%
! CCTTCTTGGTGACACCATTG+TGG + Chr6:95157114-95157133 MsG0680034833.01.T01:intron 50.0%
! CGGAGGTGTATTGTGAGTGT+AGG + Chr6:95154860-95154879 MsG0680034833.01.T01:intron 50.0%
! GCACTGGGCCTCGAATTTTT+GGG + Chr6:95154730-95154749 MsG0680034833.01.T01:intron 50.0%
!! ACTGGGCCTCGAATTTTTGG+GGG + Chr6:95154732-95154751 MsG0680034833.01.T01:intron 50.0%
!! CCACAATGGTGTCACCAAGA+AGG - Chr6:95157117-95157136 None:intergenic 50.0%
!! CCTAGTACCGGTGATCTACA+TGG - Chr6:95153118-95153137 None:intergenic 50.0%
!! GAGTGATGATGGATGTGTGG+TGG + Chr6:95153359-95153378 MsG0680034833.01.T01:CDS 50.0%
!! GTGATGATGGATGTGTGGTG+GGG + Chr6:95153361-95153380 MsG0680034833.01.T01:CDS 50.0%
!! TTGAAGAGTGCTGGTGTGGA+AGG + Chr6:95153337-95153356 MsG0680034833.01.T01:CDS 50.0%
!!! CTTGCCATGTGTTTTGGGGT+TGG + Chr6:95155925-95155944 MsG0680034833.01.T01:intron 50.0%
AATGTGCTTCAGTGGCACGG+AGG + Chr6:95154843-95154862 MsG0680034833.01.T01:intron 55.0%
ACCAAAAACCTTTCCCGGGC+TGG - Chr6:95155521-95155540 None:intergenic 55.0%
ATTCCGGTACCGCCTAGTAC+CGG - Chr6:95153130-95153149 None:intergenic 55.0%
CAGCTGGTCCCATTCCAACT+TGG - Chr6:95158059-95158078 None:intergenic 55.0%
GGACTTCTGCCCTTGAGTAC+AGG - Chr6:95157043-95157062 None:intergenic 55.0%
! CAAGTTGGAATGGGACCAGC+TGG + Chr6:95158057-95158076 MsG0680034833.01.T01:CDS 55.0%
! CCGGCCCTGGGATTTTGTAA+AGG - Chr6:95154683-95154702 None:intergenic 55.0%
! GATGGATGTGTGGTGGGGAT+TGG + Chr6:95153366-95153385 MsG0680034833.01.T01:CDS 55.0%
! TCCAGCCCGGGAAAGGTTTT+TGG + Chr6:95155517-95155536 MsG0680034833.01.T01:intron 55.0%
!! GGCACTGGGCCTCGAATTTT+TGG + Chr6:95154729-95154748 MsG0680034833.01.T01:intron 55.0%
AAGGTTCGGGGTTCGAACCC+CGG + Chr6:95155785-95155804 MsG0680034833.01.T01:intron 60.0%
AGCACGGGACCTACTGATGC+AGG + Chr6:95158338-95158357 MsG0680034833.01.T01:CDS 60.0%
AGCCCAGCCTCAACAGCCTA+TGG - Chr6:95154707-95154726 None:intergenic 60.0%
AGCCTCAACAGCCTATGGGC+CGG - Chr6:95154702-95154721 None:intergenic 60.0%
AGGCTGTTGAGGCTGGGCTA+TGG + Chr6:95154708-95154727 MsG0680034833.01.T01:intron 60.0%
CCCAGCCTCCACCTTCTTTG+CGG - Chr6:95158400-95158419 None:intergenic 60.0%
CCGCAAAGAAGGTGGAGGCT+GGG + Chr6:95158397-95158416 MsG0680034833.01.T01:CDS 60.0%
GCCCAGCCTCAACAGCCTAT+GGG - Chr6:95154706-95154725 None:intergenic 60.0%
GCCCATAGGCTGTTGAGGCT+GGG + Chr6:95154702-95154721 MsG0680034833.01.T01:intron 60.0%
GGAGGCTGGGACAGCGAATA+CGG + Chr6:95158410-95158429 MsG0680034833.01.T01:CDS 60.0%
GGGTAACGTAGCTCACCAGC+TGG - Chr6:95158075-95158094 None:intergenic 60.0%
GTCGTATTCCAGCCCGGGAA+AGG + Chr6:95155510-95155529 MsG0680034833.01.T01:intron 60.0%
TCACCGGTACTAGGCGGTAC+CGG + Chr6:95153124-95153143 MsG0680034833.01.T01:CDS 60.0%
TCCGCAAAGAAGGTGGAGGC+TGG + Chr6:95158396-95158415 MsG0680034833.01.T01:CDS 60.0%
TGAGGCTGGGCTATGGCACT+GGG + Chr6:95154715-95154734 MsG0680034833.01.T01:intron 60.0%
TTGAGGCTGGGCTATGGCAC+TGG + Chr6:95154714-95154733 MsG0680034833.01.T01:intron 60.0%
TTGGTGGAGAGGGAGAAGCC+TGG + Chr6:95153385-95153404 MsG0680034833.01.T01:CDS 60.0%
! ATGGCGGCGTTGAAGAGTGC+TGG + Chr6:95153328-95153347 MsG0680034833.01.T01:CDS 60.0%
! GGATGTGTGGTGGGGATTGG+TGG + Chr6:95153369-95153388 MsG0680034833.01.T01:CDS 60.0%
! GTGGTGGGGATTGGTGGAGA+GGG + Chr6:95153375-95153394 MsG0680034833.01.T01:CDS 60.0%
! TGTGGTGGGGATTGGTGGAG+AGG + Chr6:95153374-95153393 MsG0680034833.01.T01:CDS 60.0%
!! GGCGTTGAAGAGTGCTGGTG+TGG + Chr6:95153333-95153352 MsG0680034833.01.T01:CDS 60.0%
AAATCCCAGGGCCGGCCCAT+AGG + Chr6:95154688-95154707 MsG0680034833.01.T01:intron 65.0%
GAAGGCGGTGAATGCGGCGA+TGG + Chr6:95153309-95153328 MsG0680034833.01.T01:CDS 65.0%
GGCCCATAGGCTGTTGAGGC+TGG + Chr6:95154701-95154720 MsG0680034833.01.T01:intron 65.0%
AACAGCCTATGGGCCGGCCC+TGG - Chr6:95154696-95154715 None:intergenic 70.0%
ACAGCCTATGGGCCGGCCCT+GGG - Chr6:95154695-95154714 None:intergenic 70.0%
GGCCGGCCCATAGGCTGTTG+AGG + Chr6:95154697-95154716 MsG0680034833.01.T01:intron 70.0%
GGCGGTGAATGCGGCGATGG+CGG + Chr6:95153312-95153331 MsG0680034833.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 95152816 95158538 95152816 ID=MsG0680034833.01;Name=MsG0680034833.01
Chr6 mRNA 95152816 95158538 95152816 ID=MsG0680034833.01.T01;Parent=MsG0680034833.01;Name=MsG0680034833.01.T01;_AED=0.47;_eAED=0.47;_QI=200|0.66|0.75|1|1|1|4|0|340
Chr6 exon 95152816 95153524 95152816 ID=MsG0680034833.01.T01:exon:6272;Parent=MsG0680034833.01.T01
Chr6 exon 95156926 95157070 95156926 ID=MsG0680034833.01.T01:exon:6273;Parent=MsG0680034833.01.T01
Chr6 exon 95158051 95158161 95158051 ID=MsG0680034833.01.T01:exon:6274;Parent=MsG0680034833.01.T01
Chr6 exon 95158281 95158538 95158281 ID=MsG0680034833.01.T01:exon:6275;Parent=MsG0680034833.01.T01
Chr6 five_prime_UTR 95152816 95153015 95152816 ID=MsG0680034833.01.T01:five_prime_utr;Parent=MsG0680034833.01.T01
Chr6 CDS 95153016 95153524 95153016 ID=MsG0680034833.01.T01:cds;Parent=MsG0680034833.01.T01
Chr6 CDS 95156926 95157070 95156926 ID=MsG0680034833.01.T01:cds;Parent=MsG0680034833.01.T01
Chr6 CDS 95158051 95158161 95158051 ID=MsG0680034833.01.T01:cds;Parent=MsG0680034833.01.T01
Chr6 CDS 95158281 95158538 95158281 ID=MsG0680034833.01.T01:cds;Parent=MsG0680034833.01.T01
Gene Sequence

>MsG0680034833.01.T01

ATGAATGCAGCAGCAGTATGGAAAACACCAGCAACGAATCTACGTTGTCAAGTAACACGATCAGATGTTATTGAAAACGGATTATCACCGCCGATGAGTCCATGTAGATCACCGGTACTAGGCGGTACCGGAATCAGACCAGATCTGACATCGGCTTGTGAAGCATTAACGAAGGATGTGGTGGAGAATGAGTTTGTAGCTGGAGGAAAGACGAAGAAAGAGAAGAGTGGAGTCCCGGTGTATGTGATGATGCCGTTAGATAGTGTGACGATGGGGAATGGTGTGAATAGGAAGAAGGCGGTGAATGCGGCGATGGCGGCGTTGAAGAGTGCTGGTGTGGAAGGAGTGATGATGGATGTGTGGTGGGGATTGGTGGAGAGGGAGAAGCCTGGTGAGTATAATTGGGGTGGGTATATGGAGCTTATGGAAATGGCGAAGAAACATGGGCTTAAAGTTCAGGCGGTTATGTCTTTTCATCAATGTGGTGGTAACGTTGGTGATTCCGTCACTATTCCTTTGCCTAAATGGGCTGTAGAAGAGATGGAGAAAGATCCTGATCTTGCATATACTGATCAATGGGGAAGAAGAAATTTTGAATATTTGTCACTGGATGTGATACTTTGCCTGTACTCAAGGGCAGAAGTCCAGTTCAATGAAATCCAAGTTGGAATGGGACCAGCTGGTGAGCTACGTTACCCATCATACCCAGAGCAAAATGGAACATGGAAATTTCCAGGAATTGGTGCTTTCCAATGCTATGATAAGTATATGTTGAGTAGCTTACAAGGTGCAGCTGATGCTGCAAATAAGTCAGAATGGGGAAGCACGGGACCTACTGATGCAGGCGAGTACAACAACTGGCCAGAAGACACTAACTTTTTCCGCAAAGAAGGTGGAGGCTGGGACAGCGAATACGGTGAATTTTTCCTCACATGGTACTCTCAAATGCTGTTGAACCATGGTGAGAGGATTCTCAACAACAACAACAACAACAACAACAACAACCAAGCCTTATCCCACTAA
Protein sequence

>MsG0680034833.01.T01

MNAAAVWKTPATNLRCQVTRSDVIENGLSPPMSPCRSPVLGGTGIRPDLTSACEALTKDVVENEFVAGGKTKKEKSGVPVYVMMPLDSVTMGNGVNRKKAVNAAMAALKSAGVEGVMMDVWWGLVEREKPGEYNWGGYMELMEMAKKHGLKVQAVMSFHQCGGNVGDSVTIPLPKWAVEEMEKDPDLAYTDQWGRRNFEYLSLDVILCLYSRAEVQFNEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLQGAADAANKSEWGSTGPTDAGEYNNWPEDTNFFRKEGGGWDSEYGEFFLTWYSQMLLNHGERILNNNNNNNNNNQALSH*