Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021181.01.T01 | KEH30356.1 | 96.991 | 432 | 9 | 2 | 1 | 431 | 70 | 498 | 0 | 863 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021181.01.T01 | O48716 | 61.856 | 388 | 120 | 6 | 1 | 388 | 61 | 420 | 3.68E-166 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021181.01.T01 | A0A396IEE4 | 96.991 | 432 | 9 | 2 | 1 | 431 | 78 | 506 | 0.0 | 863 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000854.01 | MsG0480021181.01 | 0.804924 | 1.710147e-49 | 8.929646e-47 |
| MsG0180003379.01 | MsG0480021181.01 | 0.800251 | 1.573232e-48 | 7.290660e-46 |
| MsG0180005354.01 | MsG0480021181.01 | 0.807414 | 5.115238e-50 | 2.847368e-47 |
| MsG0380014214.01 | MsG0480021181.01 | 0.810181 | 1.309537e-50 | 7.840314e-48 |
| MsG0480021181.01 | MsG0480021739.01 | 0.843467 | 1.376282e-58 | 2.155317e-55 |
| MsG0480021181.01 | MsG0480022248.01 | 0.811251 | 7.687342e-51 | 4.735060e-48 |
| MsG0480021181.01 | MsG0580024602.01 | 0.807706 | 4.433067e-50 | 2.486425e-47 |
| MsG0480021181.01 | MsG0580026067.01 | 0.804015 | 2.646215e-49 | 1.349659e-46 |
| MsG0480021181.01 | MsG0580028590.01 | 0.809003 | 2.345128e-50 | 1.360933e-47 |
| MsG0480021181.01 | MsG0680031704.01 | 0.861356 | 1.086784e-63 | 3.066977e-60 |
| MsG0480021181.01 | MsG0680034833.01 | 0.812906 | 3.349126e-51 | 2.155833e-48 |
| MsG0480021181.01 | MsG0780036845.01 | 0.807387 | 5.183328e-50 | 2.883231e-47 |
| MsG0380015382.01 | MsG0480021181.01 | 0.810111 | 1.355936e-50 | 8.103938e-48 |
| MsG0380017215.01 | MsG0480021181.01 | 0.821455 | 4.001978e-53 | 3.257255e-50 |
| MsG0380017229.01 | MsG0480021181.01 | 0.815659 | 8.253828e-52 | 5.725407e-49 |
| MsG0280007011.01 | MsG0480021181.01 | 0.804789 | 1.824710e-49 | 9.494357e-47 |
| MsG0280007775.01 | MsG0480021181.01 | 0.807977 | 3.882749e-50 | 2.193264e-47 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021181.01.T01 | MTR_4g068457 | 96.991 | 432 | 9 | 2 | 1 | 431 | 70 | 498 | 0.0 | 863 |
| MsG0480021181.01.T01 | MTR_1g021590 | 62.629 | 388 | 119 | 5 | 1 | 388 | 72 | 433 | 1.23e-171 | 489 |
| MsG0480021181.01.T01 | MTR_5g018520 | 57.761 | 393 | 132 | 7 | 3 | 391 | 62 | 424 | 4.76e-160 | 459 |
| MsG0480021181.01.T01 | MTR_3g078380 | 39.474 | 342 | 186 | 10 | 64 | 386 | 70 | 409 | 2.67e-74 | 238 |
| MsG0480021181.01.T01 | MTR_5g035980 | 37.598 | 383 | 190 | 8 | 51 | 386 | 63 | 443 | 3.80e-73 | 236 |
| MsG0480021181.01.T01 | MTR_4g106480 | 37.901 | 343 | 191 | 6 | 61 | 386 | 59 | 396 | 6.09e-73 | 234 |
| MsG0480021181.01.T01 | MTR_3g110185 | 40.936 | 342 | 182 | 8 | 52 | 386 | 81 | 409 | 6.53e-73 | 244 |
| MsG0480021181.01.T01 | MTR_8g089650 | 37.500 | 360 | 204 | 8 | 39 | 387 | 80 | 429 | 8.21e-72 | 233 |
| MsG0480021181.01.T01 | MTR_2g060070 | 38.166 | 338 | 193 | 7 | 55 | 389 | 60 | 384 | 1.72e-70 | 228 |
| MsG0480021181.01.T01 | MTR_4g104410 | 39.640 | 333 | 186 | 8 | 61 | 386 | 39 | 363 | 2.40e-70 | 227 |
| MsG0480021181.01.T01 | MTR_2g101410 | 36.000 | 350 | 200 | 10 | 54 | 392 | 79 | 415 | 1.34e-62 | 209 |
| MsG0480021181.01.T01 | MTR_8g028700 | 25.649 | 308 | 199 | 12 | 44 | 331 | 214 | 511 | 3.30e-14 | 74.7 |
| MsG0480021181.01.T01 | MTR_8g032850 | 25.490 | 306 | 200 | 12 | 44 | 331 | 601 | 896 | 4.44e-13 | 71.6 |
| MsG0480021181.01.T01 | MTR_4g119620 | 25.877 | 228 | 133 | 9 | 168 | 384 | 119 | 321 | 2.12e-12 | 68.2 |
| MsG0480021181.01.T01 | MTR_8g104010 | 29.018 | 224 | 133 | 10 | 161 | 384 | 543 | 740 | 7.10e-12 | 68.2 |
| MsG0480021181.01.T01 | MTR_8g104010 | 29.018 | 224 | 133 | 10 | 161 | 384 | 626 | 823 | 7.62e-12 | 67.8 |
| MsG0480021181.01.T01 | MTR_8g104010 | 29.018 | 224 | 133 | 10 | 161 | 384 | 906 | 1103 | 7.69e-12 | 68.2 |
| MsG0480021181.01.T01 | MTR_6g465150 | 27.027 | 222 | 133 | 8 | 168 | 388 | 149 | 342 | 1.88e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021181.01.T01 | AT1G49450 | 60.453 | 397 | 127 | 7 | 3 | 390 | 95 | 470 | 4.88e-173 | 493 |
| MsG0480021181.01.T01 | AT3G18950 | 62.148 | 391 | 122 | 7 | 3 | 390 | 101 | 468 | 5.71e-173 | 493 |
| MsG0480021181.01.T01 | AT2G26490 | 61.856 | 388 | 120 | 6 | 1 | 388 | 61 | 420 | 3.75e-167 | 478 |
| MsG0480021181.01.T01 | AT4G34380 | 65.193 | 362 | 114 | 4 | 43 | 396 | 109 | 466 | 1.44e-166 | 478 |
| MsG0480021181.01.T01 | AT3G50390 | 56.784 | 398 | 160 | 7 | 2 | 393 | 40 | 431 | 2.43e-156 | 450 |
| MsG0480021181.01.T01 | AT1G47610 | 62.356 | 348 | 122 | 6 | 45 | 389 | 10 | 351 | 1.67e-145 | 418 |
| MsG0480021181.01.T01 | AT1G24130 | 41.573 | 356 | 180 | 7 | 52 | 386 | 62 | 410 | 1.81e-81 | 257 |
| MsG0480021181.01.T01 | AT5G50120 | 37.047 | 386 | 214 | 10 | 28 | 386 | 1 | 384 | 4.32e-78 | 248 |
| MsG0480021181.01.T01 | AT1G24530 | 39.466 | 337 | 185 | 7 | 62 | 392 | 86 | 409 | 8.80e-74 | 237 |
| MsG0480021181.01.T01 | AT3G51930 | 39.489 | 352 | 191 | 9 | 52 | 389 | 54 | 397 | 1.07e-73 | 237 |
| MsG0480021181.01.T01 | AT3G49660 | 26.522 | 230 | 131 | 9 | 166 | 384 | 110 | 312 | 1.27e-14 | 74.7 |
| MsG0480021181.01.T01 | AT5G16750 | 26.554 | 177 | 114 | 6 | 183 | 351 | 418 | 586 | 6.71e-11 | 65.1 |
Find 109 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATGGATTGGTTAACTTC+TGG | 0.213175 | 4:-54786316 | MsG0480021181.01.T01:CDS |
| TTGCTGACATTGATTGTTCC+TGG | 0.283768 | 4:+54785912 | None:intergenic |
| GAAGAAAACGAAGCATGTTT+TGG | 0.284274 | 4:-54786420 | MsG0480021181.01.T01:CDS |
| GATAGTTTATACTGGTAGTT+TGG | 0.292066 | 4:-54786045 | MsG0480021181.01.T01:CDS |
| TGATGGATTGGTTAACTTCT+GGG | 0.293708 | 4:-54786315 | MsG0480021181.01.T01:CDS |
| ATCTACTCCTTAGCCGTTTC+CGG | 0.295728 | 4:-54786971 | MsG0480021181.01.T01:CDS |
| GACAGCTATTTCCCGGAAAA+TGG | 0.300025 | 4:-54787028 | MsG0480021181.01.T01:CDS |
| CGGACTTCTACGTAGTTCTT+TGG | 0.319774 | 4:+54786704 | None:intergenic |
| GGCGGTGGCTGTGGTGGTAT+TGG | 0.328170 | 4:+54787068 | None:intergenic |
| AATTCTCCAATTGCACCTAT+TGG | 0.339564 | 4:-54785957 | MsG0480021181.01.T01:CDS |
| TGAGAGGAGAAGAAGTTTCT+TGG | 0.355008 | 4:+54787137 | None:intergenic |
| GTCCTATGTCTCGCCGCGGC+AGG | 0.371031 | 4:-54786233 | MsG0480021181.01.T01:CDS |
| GGGATAAAACTCTCAAAGTT+TGG | 0.381674 | 4:-54786589 | MsG0480021181.01.T01:CDS |
| CACTGTTCCATCGGCTGAGC+CGG | 0.383779 | 4:+54786475 | None:intergenic |
| TGCTGTTTCGAGTCTGAGTT+TGG | 0.386320 | 4:-54786645 | MsG0480021181.01.T01:CDS |
| TAATTCAATCCTTTGCCAAT+AGG | 0.387828 | 4:+54785942 | None:intergenic |
| TCTCAAAGTTTGGCGCGTTA+CGG | 0.407654 | 4:-54786579 | MsG0480021181.01.T01:CDS |
| ACCACTGCTTGATTTAAAAC+CGG | 0.411447 | 4:+54786883 | None:intergenic |
| CCTTTGCCAATAGGTGCAAT+TGG | 0.413227 | 4:+54785951 | None:intergenic |
| CGTTACGGATTTCAAGTGTA+TGG | 0.422165 | 4:-54786564 | MsG0480021181.01.T01:CDS |
| TCTAGAAATCATAAGCGTAT+TGG | 0.424001 | 4:-54786770 | MsG0480021181.01.T01:CDS |
| CTGAACATGCGCCAGAGTTA+AGG | 0.425735 | 4:-54785995 | MsG0480021181.01.T01:CDS |
| TCAGCAACAATAGTAATAGA+AGG | 0.431187 | 4:-54785896 | MsG0480021181.01.T01:CDS |
| GGAGAGACATCGACGGAAAA+GGG | 0.432076 | 4:-54786442 | MsG0480021181.01.T01:CDS |
| TTGCGGTTCTTCTGATGGAT+TGG | 0.439337 | 4:-54786327 | MsG0480021181.01.T01:CDS |
| TAGTTTGGATAAGTCTGTTA+AGG | 0.440081 | 4:-54786030 | MsG0480021181.01.T01:CDS |
| TTATAACGACAGCTATTTCC+CGG | 0.443220 | 4:-54787035 | MsG0480021181.01.T01:CDS |
| GTATAACATGTCACCGGAAA+CGG | 0.443548 | 4:+54786958 | None:intergenic |
| CCACACGCAAACATTCTTAT+CGG | 0.444510 | 4:+54786187 | None:intergenic |
| TTGACATAGTCTTTGAAAGT+TGG | 0.447390 | 4:+54786740 | None:intergenic |
| TGCTGACATTGATTGTTCCT+GGG | 0.450251 | 4:+54785913 | None:intergenic |
| ATTTATTGCGGTTCTTCTGA+TGG | 0.451965 | 4:-54786332 | MsG0480021181.01.T01:CDS |
| TTCCCGGAAAATGGCCTCAT+CGG | 0.452524 | 4:-54787019 | MsG0480021181.01.T01:CDS |
| ACCGGTGAAGATGTTTCCTT+CGG | 0.460672 | 4:+54786838 | None:intergenic |
| AGGAGAGACATCGACGGAAA+AGG | 0.464125 | 4:-54786443 | MsG0480021181.01.T01:CDS |
| TGTGGAGGCGCGACGATAGA+GGG | 0.465919 | 4:-54786169 | MsG0480021181.01.T01:CDS |
| CAACGGTGGATAGTTTATAC+TGG | 0.469758 | 4:-54786053 | MsG0480021181.01.T01:CDS |
| GAAGAAGTTTCTTGGTTCCA+TGG | 0.473762 | 4:+54787145 | None:intergenic |
| TTCAACGGCAATGCATTTGA+CGG | 0.476271 | 4:+54786106 | None:intergenic |
| AATCGTTGATGAATGGTTAA+CGG | 0.476756 | 4:+54786355 | None:intergenic |
| TCCCGGAAAATGGCCTCATC+GGG | 0.480547 | 4:-54787018 | MsG0480021181.01.T01:CDS |
| AATAAATAATCGTTGATGAA+TGG | 0.482054 | 4:+54786348 | None:intergenic |
| TCAACGGCAATGCATTTGAC+GGG | 0.487757 | 4:+54786107 | None:intergenic |
| TGGATAAGTCTGTTAAGGTC+TGG | 0.488240 | 4:-54786025 | MsG0480021181.01.T01:CDS |
| TGTTGTCGTGGCGGTGGCTG+TGG | 0.492689 | 4:+54787059 | None:intergenic |
| AGGTTGATTGCTTCTGATGA+TGG | 0.495947 | 4:+54787094 | None:intergenic |
| TCCTATGTCTCGCCGCGGCA+GGG | 0.498073 | 4:-54786232 | MsG0480021181.01.T01:CDS |
| GGTTGTTGTACTCAGGTTCG+TGG | 0.503075 | 4:-54786610 | MsG0480021181.01.T01:CDS |
| ACCAGTGTGTCCCGTCAAAA+CGG | 0.506792 | 4:+54786130 | None:intergenic |
| TATAATTGTTGTCGTGGCGG+TGG | 0.508719 | 4:+54787053 | None:intergenic |
| GGCTGTGGTGGTATTGGAAG+AGG | 0.508925 | 4:+54787074 | None:intergenic |
| AAAGAACTTAAAGATTATAC+CGG | 0.508943 | 4:-54786902 | MsG0480021181.01.T01:CDS |
| CCAATTGCACCTATTGGCAA+AGG | 0.511651 | 4:-54785951 | MsG0480021181.01.T01:CDS |
| TCCCTGCCGCGGCGAGACAT+AGG | 0.512835 | 4:+54786231 | None:intergenic |
| ATCTTCACCGGTCACCAAGA+TGG | 0.520474 | 4:-54786827 | MsG0480021181.01.T01:CDS |
| CCACATCTTCACTGTTCCAT+CGG | 0.523320 | 4:+54786466 | None:intergenic |
| AACCATGGTGATTTGTTGAG+AGG | 0.523351 | 4:+54787121 | None:intergenic |
| GTGTGGAGGCGCGACGATAG+AGG | 0.523354 | 4:-54786170 | MsG0480021181.01.T01:CDS |
| CTCCTCCTCGTGTTCTTCAA+CGG | 0.530483 | 4:+54786091 | None:intergenic |
| GGATTGAATTATTCTTCCCC+AGG | 0.531004 | 4:-54785930 | MsG0480021181.01.T01:CDS |
| CAAAGAACTACGTAGAAGTC+CGG | 0.531424 | 4:-54786703 | MsG0480021181.01.T01:CDS |
| AGGATGATCGCGATGATCAA+CGG | 0.538331 | 4:-54786070 | MsG0480021181.01.T01:CDS |
| CGTTGAAGAACACGAGGAGG+AGG | 0.539002 | 4:-54786090 | MsG0480021181.01.T01:CDS |
| CTAATTACATGTTATCTCCA+TGG | 0.539785 | 4:-54787162 | None:intergenic |
| AGTTAAGGTTGATGCAAGGT+TGG | 0.541351 | 4:-54785980 | MsG0480021181.01.T01:CDS |
| GGGTCACTAGCTCGCGAAGA+AGG | 0.547475 | 4:-54786998 | MsG0480021181.01.T01:CDS |
| CATGTCACCGGAAACGGCTA+AGG | 0.551651 | 4:+54786964 | None:intergenic |
| GAAGGAGGGTTGTTGTACTC+AGG | 0.553403 | 4:-54786617 | MsG0480021181.01.T01:CDS |
| TCACCGTGTTTCTACGTCGC+CGG | 0.558845 | 4:+54786684 | None:intergenic |
| AAAACCATTGTTATCTCCGA+AGG | 0.559695 | 4:-54786854 | MsG0480021181.01.T01:CDS |
| ATAAGAATGTTTGCGTGTGG+AGG | 0.574109 | 4:-54786184 | MsG0480021181.01.T01:CDS |
| CTGAGTTTGGATCAAGAAGG+AGG | 0.576458 | 4:-54786632 | MsG0480021181.01.T01:CDS |
| TCCGAAGGAAACATCTTCAC+CGG | 0.578285 | 4:-54786839 | MsG0480021181.01.T01:CDS |
| CCTTGCATCAACCTTAACTC+TGG | 0.578888 | 4:+54785984 | None:intergenic |
| GTTGTTGTACTCAGGTTCGT+GGG | 0.586838 | 4:-54786609 | MsG0480021181.01.T01:CDS |
| GGTTTGAAATGCTGCAACCA+CGG | 0.587053 | 4:+54786508 | None:intergenic |
| TGTCGTTATAATTGTTGTCG+TGG | 0.588164 | 4:+54787047 | None:intergenic |
| TCATCAACGATTATTTATTG+CGG | 0.596640 | 4:-54786344 | MsG0480021181.01.T01:CDS |
| CCGATGGAACAGTGAAGATG+TGG | 0.598551 | 4:-54786466 | MsG0480021181.01.T01:CDS |
| GCTGACATTGATTGTTCCTG+GGG | 0.599863 | 4:+54785914 | None:intergenic |
| GAAACAAGAAAACGCTGTGA+CGG | 0.601740 | 4:-54786384 | MsG0480021181.01.T01:CDS |
| TGTCGTGGCGGTGGCTGTGG+TGG | 0.601834 | 4:+54787062 | None:intergenic |
| CCGATAAGAATGTTTGCGTG+TGG | 0.609682 | 4:-54786187 | MsG0480021181.01.T01:CDS |
| TTAAAACACCGCCGTGAGTG+AGG | 0.611554 | 4:+54786273 | None:intergenic |
| TGAGTTTGGATCAAGAAGGA+GGG | 0.624574 | 4:-54786631 | MsG0480021181.01.T01:CDS |
| ACCGGTGTATAACATGTCAC+CGG | 0.625134 | 4:+54786952 | None:intergenic |
| GTGGAGGCGCGACGATAGAG+GGG | 0.628633 | 4:-54786168 | MsG0480021181.01.T01:CDS |
| ATGGAACAGTGAAGATGTGG+AGG | 0.633593 | 4:-54786463 | MsG0480021181.01.T01:CDS |
| GTTTCCTTCGGAGATAACAA+TGG | 0.634476 | 4:+54786850 | None:intergenic |
| TCCGGTGACATGTTATACAC+CGG | 0.639848 | 4:-54786953 | MsG0480021181.01.T01:CDS |
| CAGAAGAATAACCTCACTCA+CGG | 0.641267 | 4:-54786284 | MsG0480021181.01.T01:CDS |
| CCAGAGTTAAGGTTGATGCA+AGG | 0.650036 | 4:-54785984 | MsG0480021181.01.T01:CDS |
| AGTCTGAGTTTGGATCAAGA+AGG | 0.656181 | 4:-54786635 | MsG0480021181.01.T01:CDS |
| GCGACGTAGAAACACGGTGA+AGG | 0.656210 | 4:-54786681 | MsG0480021181.01.T01:CDS |
| CGCGAGCTAGTGACCCGATG+AGG | 0.657515 | 4:+54787005 | None:intergenic |
| CACGCAAACATTCTTATCGG+CGG | 0.663813 | 4:+54786190 | None:intergenic |
| CATTGCCGTTGAAGAACACG+AGG | 0.665220 | 4:-54786096 | MsG0480021181.01.T01:CDS |
| TGCCGTTGAAGAACACGAGG+AGG | 0.667001 | 4:-54786093 | MsG0480021181.01.T01:CDS |
| CGCAGTCCTATGTCTCGCCG+CGG | 0.677705 | 4:-54786237 | MsG0480021181.01.T01:CDS |
| ATGTGGAGGAGAGACATCGA+CGG | 0.680232 | 4:-54786449 | MsG0480021181.01.T01:CDS |
| CTCCTCTCAACAAATCACCA+TGG | 0.687284 | 4:-54787123 | MsG0480021181.01.T01:CDS |
| CGTTATAATTGTTGTCGTGG+CGG | 0.693088 | 4:+54787050 | None:intergenic |
| TCTGATGATGGCATTAACCA+TGG | 0.701204 | 4:+54787106 | None:intergenic |
| AGTCCGGCGACGTAGAAACA+CGG | 0.702669 | 4:-54786687 | MsG0480021181.01.T01:CDS |
| ATGATCGCGATGATCAACGG+TGG | 0.708309 | 4:-54786067 | MsG0480021181.01.T01:CDS |
| GAAAACAAGATTCCCTGCCG+CGG | 0.715565 | 4:+54786220 | None:intergenic |
| GGCTGAGCCGGTGAAAACGT+AGG | 0.729585 | 4:+54786487 | None:intergenic |
| TGATGACGCAGTGAACGCCG+TGG | 0.743023 | 4:-54786525 | MsG0480021181.01.T01:CDS |
| AAGAATAACCTCACTCACGG+CGG | 0.746398 | 4:-54786281 | MsG0480021181.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAACTTAAAGATTATAC+CGG | - | Chr4:54786133-54786152 | MsG0480021181.01.T01:CDS | 20.0% |
| !!! | AATAAATAATCGTTGATGAA+TGG | + | Chr4:54786690-54786709 | None:intergenic | 20.0% |
| ! | TCATCAACGATTATTTATTG+CGG | - | Chr4:54786691-54786710 | MsG0480021181.01.T01:CDS | 25.0% |
| !! | TTGAAGAAATTTTCCAAACT+CGG | + | Chr4:54786240-54786259 | None:intergenic | 25.0% |
| GATAGTTTATACTGGTAGTT+TGG | - | Chr4:54786990-54787009 | MsG0480021181.01.T01:CDS | 30.0% | |
| TAATTCAATCCTTTGCCAAT+AGG | + | Chr4:54787096-54787115 | None:intergenic | 30.0% | |
| TACCGATAGCAAAAACATAA+GGG | - | Chr4:54786105-54786124 | MsG0480021181.01.T01:CDS | 30.0% | |
| TAGTTTGGATAAGTCTGTTA+AGG | - | Chr4:54787005-54787024 | MsG0480021181.01.T01:CDS | 30.0% | |
| TCAGCAACAATAGTAATAGA+AGG | - | Chr4:54787139-54787158 | MsG0480021181.01.T01:CDS | 30.0% | |
| TCTAGAAATCATAAGCGTAT+TGG | - | Chr4:54786265-54786284 | MsG0480021181.01.T01:CDS | 30.0% | |
| ! | AATCGTTGATGAATGGTTAA+CGG | + | Chr4:54786683-54786702 | None:intergenic | 30.0% |
| ! | TTGACATAGTCTTTGAAAGT+TGG | + | Chr4:54786298-54786317 | None:intergenic | 30.0% |
| ! | TTTTAAATCAAGCAGTGGTT+TGG | - | Chr4:54786156-54786175 | MsG0480021181.01.T01:CDS | 30.0% |
| AAAACCATTGTTATCTCCGA+AGG | - | Chr4:54786181-54786200 | MsG0480021181.01.T01:CDS | 35.0% | |
| AAGATGGAAAAATCCGAGTT+TGG | - | Chr4:54786224-54786243 | MsG0480021181.01.T01:CDS | 35.0% | |
| AATTCTCCAATTGCACCTAT+TGG | - | Chr4:54787078-54787097 | MsG0480021181.01.T01:CDS | 35.0% | |
| ATAGCAAAAACATAAGGGTG+TGG | - | Chr4:54786110-54786129 | MsG0480021181.01.T01:CDS | 35.0% | |
| ATTTATTGCGGTTCTTCTGA+TGG | - | Chr4:54786703-54786722 | MsG0480021181.01.T01:CDS | 35.0% | |
| GGGATAAAACTCTCAAAGTT+TGG | - | Chr4:54786446-54786465 | MsG0480021181.01.T01:CDS | 35.0% | |
| TGTCGTTATAATTGTTGTCG+TGG | + | Chr4:54785991-54786010 | None:intergenic | 35.0% | |
| ! | AAACTCGGATTTTTCCATCT+TGG | + | Chr4:54786225-54786244 | None:intergenic | 35.0% |
| ! | ACCACTGCTTGATTTAAAAC+CGG | + | Chr4:54786155-54786174 | None:intergenic | 35.0% |
| ! | CATTTGTCTTTCCGTTTTGA+CGG | - | Chr4:54786894-54786913 | MsG0480021181.01.T01:CDS | 35.0% |
| ! | GAAGAAAACGAAGCATGTTT+TGG | - | Chr4:54786615-54786634 | MsG0480021181.01.T01:CDS | 35.0% |
| ! | GTACCGATAGCAAAAACATA+AGG | - | Chr4:54786104-54786123 | MsG0480021181.01.T01:CDS | 35.0% |
| ! | TTATAACGACAGCTATTTCC+CGG | - | Chr4:54786000-54786019 | MsG0480021181.01.T01:CDS | 35.0% |
| ! | TTTCAAACCTACGTTTTCAC+CGG | - | Chr4:54786541-54786560 | MsG0480021181.01.T01:CDS | 35.0% |
| !! | AAACGAAGCATGTTTTGGAT+AGG | - | Chr4:54786620-54786639 | MsG0480021181.01.T01:CDS | 35.0% |
| !! | ATTTGTCTTTCCGTTTTGAC+GGG | - | Chr4:54786895-54786914 | MsG0480021181.01.T01:CDS | 35.0% |
| !! | CACCCTTATGTTTTTGCTAT+CGG | + | Chr4:54786110-54786129 | None:intergenic | 35.0% |
| !! | TATGTTTTTGCTATCGGTAC+CGG | + | Chr4:54786104-54786123 | None:intergenic | 35.0% |
| !! | TGATGGATTGGTTAACTTCT+GGG | - | Chr4:54786720-54786739 | MsG0480021181.01.T01:CDS | 35.0% |
| AGTCTGAGTTTGGATCAAGA+AGG | - | Chr4:54786400-54786419 | MsG0480021181.01.T01:CDS | 40.0% | |
| ATAAGAATGTTTGCGTGTGG+AGG | - | Chr4:54786851-54786870 | MsG0480021181.01.T01:CDS | 40.0% | |
| CAAAGAACTACGTAGAAGTC+CGG | - | Chr4:54786332-54786351 | MsG0480021181.01.T01:CDS | 40.0% | |
| CAACGGTGGATAGTTTATAC+TGG | - | Chr4:54786982-54787001 | MsG0480021181.01.T01:CDS | 40.0% | |
| CAGAAGAATAACCTCACTCA+CGG | - | Chr4:54786751-54786770 | MsG0480021181.01.T01:CDS | 40.0% | |
| CCACACGCAAACATTCTTAT+CGG | + | Chr4:54786851-54786870 | None:intergenic | 40.0% | |
| CGTTATAATTGTTGTCGTGG+CGG | + | Chr4:54785988-54786007 | None:intergenic | 40.0% | |
| GAAACAAGAAAACGCTGTGA+CGG | - | Chr4:54786651-54786670 | MsG0480021181.01.T01:CDS | 40.0% | |
| GAAGAAGTTTCTTGGTTCCA+TGG | + | Chr4:54785893-54785912 | None:intergenic | 40.0% | |
| GGATTGAATTATTCTTCCCC+AGG | - | Chr4:54787105-54787124 | MsG0480021181.01.T01:CDS | 40.0% | |
| GTATAACATGTCACCGGAAA+CGG | + | Chr4:54786080-54786099 | None:intergenic | 40.0% | |
| GTTTCCTTCGGAGATAACAA+TGG | + | Chr4:54786188-54786207 | None:intergenic | 40.0% | |
| TGAGAGGAGAAGAAGTTTCT+TGG | + | Chr4:54785901-54785920 | None:intergenic | 40.0% | |
| TGAGTTTGGATCAAGAAGGA+GGG | - | Chr4:54786404-54786423 | MsG0480021181.01.T01:CDS | 40.0% | |
| TGGATAAGTCTGTTAAGGTC+TGG | - | Chr4:54787010-54787029 | MsG0480021181.01.T01:CDS | 40.0% | |
| TTCAACGGCAATGCATTTGA+CGG | + | Chr4:54786932-54786951 | None:intergenic | 40.0% | |
| ! | AGGTTGATTGCTTCTGATGA+TGG | + | Chr4:54785944-54785963 | None:intergenic | 40.0% |
| ! | CGTTACGGATTTCAAGTGTA+TGG | - | Chr4:54786471-54786490 | MsG0480021181.01.T01:CDS | 40.0% |
| ! | TGCTGACATTGATTGTTCCT+GGG | + | Chr4:54787125-54787144 | None:intergenic | 40.0% |
| ! | TTGCTGACATTGATTGTTCC+TGG | + | Chr4:54787126-54787145 | None:intergenic | 40.0% |
| !! | AACCATGGTGATTTGTTGAG+AGG | + | Chr4:54785917-54785936 | None:intergenic | 40.0% |
| !! | AGTTAAGGTTGATGCAAGGT+TGG | - | Chr4:54787055-54787074 | MsG0480021181.01.T01:CDS | 40.0% |
| !! | CTGATGGATTGGTTAACTTC+TGG | - | Chr4:54786719-54786738 | MsG0480021181.01.T01:CDS | 40.0% |
| !! | GATTTTTCCATCTTGGTGAC+CGG | + | Chr4:54786218-54786237 | None:intergenic | 40.0% |
| !! | TCTGATGATGGCATTAACCA+TGG | + | Chr4:54785932-54785951 | None:intergenic | 40.0% |
| !!! | ACCGGTTTTAAATCAAGCAG+TGG | - | Chr4:54786151-54786170 | MsG0480021181.01.T01:CDS | 40.0% |
| AAGAATAACCTCACTCACGG+CGG | - | Chr4:54786754-54786773 | MsG0480021181.01.T01:CDS | 45.0% | |
| ACCGGTGAAGATGTTTCCTT+CGG | + | Chr4:54786200-54786219 | None:intergenic | 45.0% | |
| ACCGGTGTATAACATGTCAC+CGG | + | Chr4:54786086-54786105 | None:intergenic | 45.0% | |
| AGGATGATCGCGATGATCAA+CGG | - | Chr4:54786965-54786984 | MsG0480021181.01.T01:CDS | 45.0% | |
| ATCTACTCCTTAGCCGTTTC+CGG | - | Chr4:54786064-54786083 | MsG0480021181.01.T01:CDS | 45.0% | |
| ATGGAACAGTGAAGATGTGG+AGG | - | Chr4:54786572-54786591 | MsG0480021181.01.T01:CDS | 45.0% | |
| CACGCAAACATTCTTATCGG+CGG | + | Chr4:54786848-54786867 | None:intergenic | 45.0% | |
| CCAATTGCACCTATTGGCAA+AGG | - | Chr4:54787084-54787103 | MsG0480021181.01.T01:CDS | 45.0% | |
| CCACATCTTCACTGTTCCAT+CGG | + | Chr4:54786572-54786591 | None:intergenic | 45.0% | |
| CCGATAAGAATGTTTGCGTG+TGG | - | Chr4:54786848-54786867 | MsG0480021181.01.T01:CDS | 45.0% | |
| CCTTGCATCAACCTTAACTC+TGG | + | Chr4:54787054-54787073 | None:intergenic | 45.0% | |
| CCTTTGCCAATAGGTGCAAT+TGG | + | Chr4:54787087-54787106 | None:intergenic | 45.0% | |
| CGGACTTCTACGTAGTTCTT+TGG | + | Chr4:54786334-54786353 | None:intergenic | 45.0% | |
| CTCCTCTCAACAAATCACCA+TGG | - | Chr4:54785912-54785931 | MsG0480021181.01.T01:CDS | 45.0% | |
| CTGAGTTTGGATCAAGAAGG+AGG | - | Chr4:54786403-54786422 | MsG0480021181.01.T01:CDS | 45.0% | |
| GTTGTTGTACTCAGGTTCGT+GGG | - | Chr4:54786426-54786445 | MsG0480021181.01.T01:CDS | 45.0% | |
| TATAATTGTTGTCGTGGCGG+TGG | + | Chr4:54785985-54786004 | None:intergenic | 45.0% | |
| TCAACGGCAATGCATTTGAC+GGG | + | Chr4:54786931-54786950 | None:intergenic | 45.0% | |
| TCCGAAGGAAACATCTTCAC+CGG | - | Chr4:54786196-54786215 | MsG0480021181.01.T01:CDS | 45.0% | |
| TCCGGTGACATGTTATACAC+CGG | - | Chr4:54786082-54786101 | MsG0480021181.01.T01:CDS | 45.0% | |
| TCTCAAAGTTTGGCGCGTTA+CGG | - | Chr4:54786456-54786475 | MsG0480021181.01.T01:CDS | 45.0% | |
| ! | GACAGCTATTTCCCGGAAAA+TGG | - | Chr4:54786007-54786026 | MsG0480021181.01.T01:CDS | 45.0% |
| ! | GCTGACATTGATTGTTCCTG+GGG | + | Chr4:54787124-54787143 | None:intergenic | 45.0% |
| ! | GGTTTGAAATGCTGCAACCA+CGG | + | Chr4:54786530-54786549 | None:intergenic | 45.0% |
| ! | TTGCGGTTCTTCTGATGGAT+TGG | - | Chr4:54786708-54786727 | MsG0480021181.01.T01:CDS | 45.0% |
| !! | ACTCACGGCGGTGTTTTAAA+GGG | - | Chr4:54786766-54786785 | MsG0480021181.01.T01:CDS | 45.0% |
| !! | CCAGAGTTAAGGTTGATGCA+AGG | - | Chr4:54787051-54787070 | MsG0480021181.01.T01:CDS | 45.0% |
| !! | TGCTGTTTCGAGTCTGAGTT+TGG | - | Chr4:54786390-54786409 | MsG0480021181.01.T01:CDS | 45.0% |
| !!! | GCAGGGAATCTTGTTTTCAG+TGG | - | Chr4:54786820-54786839 | MsG0480021181.01.T01:CDS | 45.0% |
| ACCAGTGTGTCCCGTCAAAA+CGG | + | Chr4:54786908-54786927 | None:intergenic | 50.0% | |
| AGGAGAGACATCGACGGAAA+AGG | - | Chr4:54786592-54786611 | MsG0480021181.01.T01:CDS | 50.0% | |
| ATCTTCACCGGTCACCAAGA+TGG | - | Chr4:54786208-54786227 | MsG0480021181.01.T01:CDS | 50.0% | |
| ATGATCGCGATGATCAACGG+TGG | - | Chr4:54786968-54786987 | MsG0480021181.01.T01:CDS | 50.0% | |
| ATGTGGAGGAGAGACATCGA+CGG | - | Chr4:54786586-54786605 | MsG0480021181.01.T01:CDS | 50.0% | |
| CATTGCCGTTGAAGAACACG+AGG | - | Chr4:54786939-54786958 | MsG0480021181.01.T01:CDS | 50.0% | |
| CCGATGGAACAGTGAAGATG+TGG | - | Chr4:54786569-54786588 | MsG0480021181.01.T01:CDS | 50.0% | |
| CTCCTCCTCGTGTTCTTCAA+CGG | + | Chr4:54786947-54786966 | None:intergenic | 50.0% | |
| CTGAACATGCGCCAGAGTTA+AGG | - | Chr4:54787040-54787059 | MsG0480021181.01.T01:CDS | 50.0% | |
| GAAAACAAGATTCCCTGCCG+CGG | + | Chr4:54786818-54786837 | None:intergenic | 50.0% | |
| GAAGGAGGGTTGTTGTACTC+AGG | - | Chr4:54786418-54786437 | MsG0480021181.01.T01:CDS | 50.0% | |
| GGAGAGACATCGACGGAAAA+GGG | - | Chr4:54786593-54786612 | MsG0480021181.01.T01:CDS | 50.0% | |
| GGTTGTTGTACTCAGGTTCG+TGG | - | Chr4:54786425-54786444 | MsG0480021181.01.T01:CDS | 50.0% | |
| TTAAAACACCGCCGTGAGTG+AGG | + | Chr4:54786765-54786784 | None:intergenic | 50.0% | |
| TTCCCGGAAAATGGCCTCAT+CGG | - | Chr4:54786016-54786035 | MsG0480021181.01.T01:CDS | 50.0% | |
| !! | CACTCACGGCGGTGTTTTAA+AGG | - | Chr4:54786765-54786784 | MsG0480021181.01.T01:CDS | 50.0% |
| AGTCCGGCGACGTAGAAACA+CGG | - | Chr4:54786348-54786367 | MsG0480021181.01.T01:CDS | 55.0% | |
| CATGTCACCGGAAACGGCTA+AGG | + | Chr4:54786074-54786093 | None:intergenic | 55.0% | |
| CGTTGAAGAACACGAGGAGG+AGG | - | Chr4:54786945-54786964 | MsG0480021181.01.T01:CDS | 55.0% | |
| GCGACGTAGAAACACGGTGA+AGG | - | Chr4:54786354-54786373 | MsG0480021181.01.T01:CDS | 55.0% | |
| TCCCGGAAAATGGCCTCATC+GGG | - | Chr4:54786017-54786036 | MsG0480021181.01.T01:CDS | 55.0% | |
| TGCCGTTGAAGAACACGAGG+AGG | - | Chr4:54786942-54786961 | MsG0480021181.01.T01:CDS | 55.0% | |
| ! | GGCTGTGGTGGTATTGGAAG+AGG | + | Chr4:54785964-54785983 | None:intergenic | 55.0% |
| ! | TCACCGTGTTTCTACGTCGC+CGG | + | Chr4:54786354-54786373 | None:intergenic | 55.0% |
| !! | ACCCGATGAGGCCATTTTCC+GGG | + | Chr4:54786021-54786040 | None:intergenic | 55.0% |
| !! | GACCCGATGAGGCCATTTTC+CGG | + | Chr4:54786022-54786041 | None:intergenic | 55.0% |
| !! | TCCGTTTTGACGGGACACAC+TGG | - | Chr4:54786904-54786923 | MsG0480021181.01.T01:CDS | 55.0% |
| GGCTGAGCCGGTGAAAACGT+AGG | + | Chr4:54786551-54786570 | None:intergenic | 60.0% | |
| GGGTCACTAGCTCGCGAAGA+AGG | - | Chr4:54786037-54786056 | MsG0480021181.01.T01:CDS | 60.0% | |
| ! | CACTGTTCCATCGGCTGAGC+CGG | + | Chr4:54786563-54786582 | None:intergenic | 60.0% |
| ! | TGATGACGCAGTGAACGCCG+TGG | - | Chr4:54786510-54786529 | MsG0480021181.01.T01:CDS | 60.0% |
| ! | TGTGGAGGCGCGACGATAGA+GGG | - | Chr4:54786866-54786885 | MsG0480021181.01.T01:CDS | 60.0% |
| !!! | GTTTTCACCGGCTCAGCCGA+TGG | - | Chr4:54786553-54786572 | MsG0480021181.01.T01:CDS | 60.0% |
| CGCAGTCCTATGTCTCGCCG+CGG | - | Chr4:54786798-54786817 | MsG0480021181.01.T01:CDS | 65.0% | |
| CGCGAGCTAGTGACCCGATG+AGG | + | Chr4:54786033-54786052 | None:intergenic | 65.0% | |
| GGCGGTGGCTGTGGTGGTAT+TGG | + | Chr4:54785970-54785989 | None:intergenic | 65.0% | |
| TCCTATGTCTCGCCGCGGCA+GGG | - | Chr4:54786803-54786822 | MsG0480021181.01.T01:CDS | 65.0% | |
| TGTTGTCGTGGCGGTGGCTG+TGG | + | Chr4:54785979-54785998 | None:intergenic | 65.0% | |
| ! | GTGGAGGCGCGACGATAGAG+GGG | - | Chr4:54786867-54786886 | MsG0480021181.01.T01:CDS | 65.0% |
| ! | GTGTGGAGGCGCGACGATAG+AGG | - | Chr4:54786865-54786884 | MsG0480021181.01.T01:CDS | 65.0% |
| GTCCTATGTCTCGCCGCGGC+AGG | - | Chr4:54786802-54786821 | MsG0480021181.01.T01:CDS | 70.0% | |
| TCCCTGCCGCGGCGAGACAT+AGG | + | Chr4:54786807-54786826 | None:intergenic | 70.0% | |
| TGTCGTGGCGGTGGCTGTGG+TGG | + | Chr4:54785976-54785995 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 54785881 | 54787176 | 54785881 | ID=MsG0480021181.01;Name=MsG0480021181.01 |
| Chr4 | mRNA | 54785881 | 54787176 | 54785881 | ID=MsG0480021181.01.T01;Parent=MsG0480021181.01;Name=MsG0480021181.01.T01;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|431 |
| Chr4 | exon | 54785881 | 54787176 | 54785881 | ID=MsG0480021181.01.T01:exon:1079;Parent=MsG0480021181.01.T01 |
| Chr4 | CDS | 54785881 | 54787176 | 54785881 | ID=MsG0480021181.01.T01:cds;Parent=MsG0480021181.01.T01 |
| Gene Sequence |
| Protein sequence |
