AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035439.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035439.01.T01 MTR_7g015420 33.728 338 175 7 162 495 846 1138 8.94e-39 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCAATGCTTTCTGAATT+TGG 0.055749 6:+105665617 None:intergenic
CACTCCTGTTGAACTTCTTC+TGG 0.193028 6:+105665383 None:intergenic
TTCTTTCTGGAGATTTATTA+TGG 0.212776 6:+105666051 None:intergenic
AGCAATGGTCATTTCTTTAT+AGG 0.243390 6:+105666129 None:intergenic
ACCCCATGTGTGGTATTAAC+TGG 0.246676 6:+105665938 None:intergenic
ATTGCAAGCCTTCACATTAA+TGG 0.253164 6:-105666214 MsG0680035439.01.T01:CDS
TGAAAGGAATTTACAACAAT+TGG 0.254719 6:-105666240 MsG0680035439.01.T01:CDS
TTCTACCATTATTAATTATA+AGG 0.271230 6:-105665534 MsG0680035439.01.T01:CDS
ATGACCATTGCTAAAGAAAT+TGG 0.277659 6:-105666118 MsG0680035439.01.T01:CDS
TTGGAAGATCAGCGAGTTCT+TGG 0.297175 6:+105665810 None:intergenic
TATGATAACCTTATCAGATA+TGG 0.298938 6:-105665557 MsG0680035439.01.T01:CDS
CCAAGAACAGTCATCAAAAT+AGG 0.302495 6:-105665665 MsG0680035439.01.T01:CDS
AAGTAATAACATCCGAATTA+AGG 0.304901 6:-105666946 MsG0680035439.01.T01:CDS
ACAAAGGGCATATCTGTAAA+TGG 0.307324 6:-105665340 MsG0680035439.01.T01:CDS
CAAGATCTTTATCCTTAATT+CGG 0.309058 6:+105666934 None:intergenic
AGCTTCGACATTTATGATCT+TGG 0.310321 6:+105666483 None:intergenic
ATCAATTCCTTGGATATTCC+TGG 0.316882 6:+105665899 None:intergenic
AAAGGCAAAAGAAGCTTATA+AGG 0.353366 6:-105666155 MsG0680035439.01.T01:CDS
ACTGTATCACCAATCTCTTT+TGG 0.356945 6:+105665791 None:intergenic
TCTTCTTGCATTGTGATTGT+CGG 0.357838 6:+105665278 None:intergenic
ACCTAATGGTAAACAAAAGT+TGG 0.368453 6:-105667114 MsG0680035439.01.T01:CDS
TTGTTGTAAATTCCTTTCAT+TGG 0.370161 6:+105666244 None:intergenic
TTGAGAATAGCTCTTCATAA+TGG 0.376513 6:+105665432 None:intergenic
TTAAAATCAGATATCCCTAA+TGG 0.386592 6:-105667017 MsG0680035439.01.T01:CDS
CGACATTTATGATCTTGGTT+AGG 0.388710 6:+105666488 None:intergenic
AAATTCTTTAATCAATTCCT+TGG 0.393869 6:+105665889 None:intergenic
ATGGATAGGTTTGTTCAAAC+TGG 0.395669 6:+105665723 None:intergenic
TGCTAATTCTTCTTTGAAGT+TGG 0.403785 6:+105665976 None:intergenic
GTAAAAGCTAATACAGTTCC+AGG 0.404206 6:-105665917 MsG0680035439.01.T01:CDS
ACTCCTGTTGAACTTCTTCT+GGG 0.405825 6:+105665384 None:intergenic
AAGGACCTTATAATTAATAA+TGG 0.408207 6:+105665529 None:intergenic
GGTCCCAGAAGAAGTTCAAC+AGG 0.418738 6:-105665387 MsG0680035439.01.T01:CDS
AATGTGTATGTCATCTTTGA+TGG 0.421041 6:-105666268 MsG0680035439.01.T01:CDS
TTTAATGATTTCCTTGCTAA+AGG 0.422353 6:-105665761 MsG0680035439.01.T01:CDS
GTTGGTTCATCTGTTGTTGT+TGG 0.430553 6:+105666460 None:intergenic
GAAAGGAATTTACAACAATT+GGG 0.440639 6:-105666239 MsG0680035439.01.T01:CDS
GGTTGCGCCCACAATGGTAT+AGG 0.457283 6:+105667046 None:intergenic
TAAAATCAGATATCCCTAAT+GGG 0.461185 6:-105667016 MsG0680035439.01.T01:CDS
GTTGAACTTCTTCTGGGACC+TGG 0.477362 6:+105665390 None:intergenic
CCTAATGGTAAACAAAAGTT+GGG 0.478667 6:-105667113 MsG0680035439.01.T01:CDS
TGGTAGAACCATATCTGATA+AGG 0.482750 6:+105665549 None:intergenic
GCTGATCTTCCAAAAGAGAT+TGG 0.485768 6:-105665800 MsG0680035439.01.T01:CDS
GTTATGAGAGCTCTACCTAA+TGG 0.490531 6:-105667128 MsG0680035439.01.T01:CDS
GATCGACAGCGTCGCTTGGT+TGG 0.493237 6:+105666305 None:intergenic
AGCTTATCCAACAATGGAAA+AGG 0.494610 6:-105666173 MsG0680035439.01.T01:CDS
ATGCAAGAAGAAAAGGCAAA+AGG 0.495609 6:-105665266 MsG0680035439.01.T01:CDS
CAATGGTATAGGATTGTTGT+GGG 0.495917 6:+105667057 None:intergenic
CAACAATCCTATACCATTGT+GGG 0.497317 6:-105667053 MsG0680035439.01.T01:CDS
AATCACAATGCAAGAAGAAA+AGG 0.500913 6:-105665273 MsG0680035439.01.T01:CDS
AATGGTCATTTCTTTATAGG+AGG 0.503367 6:+105666132 None:intergenic
TTTGCTTCAAGCTATTGTAA+AGG 0.506523 6:+105666593 None:intergenic
CCCCATGTGTGGTATTAACT+GGG 0.518291 6:+105665939 None:intergenic
AAGTTGGGATTAAATCTCAA+TGG 0.521557 6:-105667098 MsG0680035439.01.T01:CDS
CAGATACTCTGACAAGAGAA+TGG 0.521711 6:-105666632 MsG0680035439.01.T01:CDS
ATCTTTGATGGTCCAATGAA+AGG 0.523794 6:-105666256 MsG0680035439.01.T01:CDS
TTGACCAATTTCTTTAGCAA+TGG 0.527271 6:+105666114 None:intergenic
CCTCCAAATTCAGAAAGCAT+TGG 0.535767 6:-105665620 MsG0680035439.01.T01:CDS
AAATTTCTCTTCCTTTAGCA+AGG 0.541093 6:+105665750 None:intergenic
AACACTTCTCGAAATACAAA+GGG 0.542133 6:-105665355 MsG0680035439.01.T01:CDS
CCAATGCTTTCTGAATTTGG+AGG 0.543598 6:+105665620 None:intergenic
TACCCAGTTAATACCACACA+TGG 0.547035 6:-105665941 MsG0680035439.01.T01:CDS
CATAATGGAGTGTTTGCTTG+AGG 0.547078 6:+105665447 None:intergenic
TGTAGATCGACAGCGTCGCT+TGG 0.547508 6:+105666301 None:intergenic
GACAGGTCTCTGTAATGTAA+AGG 0.564403 6:+105665510 None:intergenic
AGTTTGAACAAACCTATCCA+TGG 0.565374 6:-105665721 MsG0680035439.01.T01:CDS
GGTCTGTGATTCAAAGAGGA+AGG 0.571186 6:-105665483 MsG0680035439.01.T01:CDS
TGAATCACAGACCATGAGAC+AGG 0.573884 6:+105665493 None:intergenic
ACAATGGTATAGGATTGTTG+TGG 0.577879 6:+105667056 None:intergenic
CAAATTCAGAAAGCATTGGA+TGG 0.578452 6:-105665616 MsG0680035439.01.T01:CDS
CATTACAGAGACCTGTCTCA+TGG 0.579119 6:-105665504 MsG0680035439.01.T01:CDS
AACAAGTCTCTTCAGAGAGG+GGG 0.585336 6:-105666534 MsG0680035439.01.T01:CDS
ACAACAATCCTATACCATTG+TGG 0.587808 6:-105667054 MsG0680035439.01.T01:CDS
AAAACAAGTCTCTTCAGAGA+GGG 0.588204 6:-105666536 MsG0680035439.01.T01:CDS
TAAAACAAGTCTCTTCAGAG+AGG 0.588580 6:-105666537 MsG0680035439.01.T01:CDS
AAGACCGTGTATCTTGAAGA+AGG 0.589474 6:-105665848 MsG0680035439.01.T01:CDS
CAACACTTCTCGAAATACAA+AGG 0.592269 6:-105665356 MsG0680035439.01.T01:CDS
AAATCTCAATGGATATGTTG+AGG 0.592761 6:-105667087 MsG0680035439.01.T01:CDS
CTGTGGGGTTGCGCCCACAA+TGG 0.596568 6:+105667040 None:intergenic
TTCAAAGAGGAAGGTTTCAG+AGG 0.605174 6:-105665474 MsG0680035439.01.T01:CDS
TACAGTTCCAGGAATATCCA+AGG 0.606010 6:-105665906 MsG0680035439.01.T01:CDS
TTCTCCTTCTTCAAGATACA+CGG 0.616135 6:+105665844 None:intergenic
ACCCAGTTAATACCACACAT+GGG 0.621693 6:-105665940 MsG0680035439.01.T01:CDS
ACACAAAGCTTATCCAACAA+TGG 0.626090 6:-105666179 MsG0680035439.01.T01:CDS
TCATGGTCTGTGATTCAAAG+AGG 0.633070 6:-105665487 MsG0680035439.01.T01:CDS
CCCAGTTAATACCACACATG+GGG 0.643131 6:-105665939 MsG0680035439.01.T01:CDS
ACAAGTCTCTTCAGAGAGGG+GGG 0.645634 6:-105666533 MsG0680035439.01.T01:CDS
GTGTATCTTGAAGAAGGAGA+AGG 0.648049 6:-105665842 MsG0680035439.01.T01:CDS
AAACAAGTCTCTTCAGAGAG+GGG 0.665343 6:-105666535 MsG0680035439.01.T01:CDS
AATGGTATAGGATTGTTGTG+GGG 0.670552 6:+105667058 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTACCATTATTAATTATA+AGG - Chr6:105666847-105666866 MsG0680035439.01.T01:intron 15.0%
!!! ATTAAAGAATTTTATGACTA+TGG - Chr6:105666503-105666522 MsG0680035439.01.T01:CDS 15.0%
!!! GTTTAAATGTTTTAGAAAAA+TGG - Chr6:105665548-105665567 MsG0680035439.01.T01:CDS 15.0%
!!! TTTTGAAGAAAATAATTTCA+TGG - Chr6:105666685-105666704 MsG0680035439.01.T01:intron 15.0%
!! AAATTCTTTAATCAATTCCT+TGG + Chr6:105666495-105666514 None:intergenic 20.0%
!! AAGGACCTTATAATTAATAA+TGG + Chr6:105666855-105666874 None:intergenic 20.0%
!!! AAAAACTCTTGATGATTTTA+TGG - Chr6:105666364-105666383 MsG0680035439.01.T01:CDS 20.0%
!!! AAAACTCTTGATGATTTTAT+GGG - Chr6:105666365-105666384 MsG0680035439.01.T01:CDS 20.0%
!!! ATAAAATCATCAAGAGTTTT+TGG + Chr6:105666365-105666384 None:intergenic 20.0%
!!! GATTTTATTAGTTGAATGTA+AGG + Chr6:105665712-105665731 None:intergenic 20.0%
!!! TTATTTTCTTCAAAAAACCA+TGG + Chr6:105666680-105666699 None:intergenic 20.0%
! AAGAAGATACAAAAAAGTCA+TGG - Chr6:105666006-105666025 MsG0680035439.01.T01:CDS 25.0%
! AAGTAATAACATCCGAATTA+AGG - Chr6:105665435-105665454 MsG0680035439.01.T01:CDS 25.0%
! AGAAGATACAAAAAAGTCAT+GGG - Chr6:105666007-105666026 MsG0680035439.01.T01:CDS 25.0%
! CAAGATCTTTATCCTTAATT+CGG + Chr6:105665450-105665469 None:intergenic 25.0%
! GAAAGGAATTTACAACAATT+GGG - Chr6:105666142-105666161 MsG0680035439.01.T01:CDS 25.0%
! GTTCGTAATAAAAATCTTGA+TGG + Chr6:105665589-105665608 None:intergenic 25.0%
! TAAAATCAGATATCCCTAAT+GGG - Chr6:105665365-105665384 MsG0680035439.01.T01:CDS 25.0%
! TATGATAACCTTATCAGATA+TGG - Chr6:105666824-105666843 MsG0680035439.01.T01:intron 25.0%
! TGAAAGGAATTTACAACAAT+TGG - Chr6:105666141-105666160 MsG0680035439.01.T01:CDS 25.0%
! TTAAAATCAGATATCCCTAA+TGG - Chr6:105665364-105665383 MsG0680035439.01.T01:CDS 25.0%
! TTGTTGTAAATTCCTTTCAT+TGG + Chr6:105666140-105666159 None:intergenic 25.0%
! TTTAATGATTTCCTTGCTAA+AGG - Chr6:105666620-105666639 MsG0680035439.01.T01:CDS 25.0%
!! TTAAAAGTTGATCACAAACA+AGG - Chr6:105665646-105665665 MsG0680035439.01.T01:CDS 25.0%
!! TTCTTTCTGGAGATTTATTA+TGG + Chr6:105666333-105666352 None:intergenic 25.0%
!!! TCATTCAAAGTCTTTTTTGT+TGG + Chr6:105665942-105665961 None:intergenic 25.0%
!!! TGTTTTAGAAAAATGGAGAA+TGG - Chr6:105665555-105665574 MsG0680035439.01.T01:CDS 25.0%
!!! TTGGCTTATTTTTTTCTTTC+TGG + Chr6:105666346-105666365 None:intergenic 25.0%
AAAGGCAAAAGAAGCTTATA+AGG - Chr6:105666226-105666245 MsG0680035439.01.T01:CDS 30.0%
AAATCTCAATGGATATGTTG+AGG - Chr6:105665294-105665313 MsG0680035439.01.T01:CDS 30.0%
AAATTTCTCTTCCTTTAGCA+AGG + Chr6:105666634-105666653 None:intergenic 30.0%
AACACTTCTCGAAATACAAA+GGG - Chr6:105667026-105667045 MsG0680035439.01.T01:CDS 30.0%
AAGTTGGGATTAAATCTCAA+TGG - Chr6:105665283-105665302 MsG0680035439.01.T01:CDS 30.0%
AATCACAATGCAAGAAGAAA+AGG - Chr6:105667108-105667127 MsG0680035439.01.T01:CDS 30.0%
AATGGTCATTTCTTTATAGG+AGG + Chr6:105666252-105666271 None:intergenic 30.0%
AATGTGTATGTCATCTTTGA+TGG - Chr6:105666113-105666132 MsG0680035439.01.T01:CDS 30.0%
AATTGGTCAACCATCAAAAA+TGG - Chr6:105666280-105666299 MsG0680035439.01.T01:CDS 30.0%
ACCTAATGGTAAACAAAAGT+TGG - Chr6:105665267-105665286 MsG0680035439.01.T01:CDS 30.0%
AGCAATGGTCATTTCTTTAT+AGG + Chr6:105666255-105666274 None:intergenic 30.0%
ATGACCATTGCTAAAGAAAT+TGG - Chr6:105666263-105666282 MsG0680035439.01.T01:CDS 30.0%
CCTAATGGTAAACAAAAGTT+GGG - Chr6:105665268-105665287 MsG0680035439.01.T01:CDS 30.0%
GAAGATGAAGAGTCAAAAAA+TGG - Chr6:105666047-105666066 MsG0680035439.01.T01:CDS 30.0%
GAATGTAAGGATAGAATTGT+TGG + Chr6:105665699-105665718 None:intergenic 30.0%
TCAAAGAAAAAGATCTCAGT+GGG - Chr6:105666305-105666324 MsG0680035439.01.T01:CDS 30.0%
TTCTTCAAAAAACCATGGAT+AGG + Chr6:105666675-105666694 None:intergenic 30.0%
TTGACCAATTTCTTTAGCAA+TGG + Chr6:105666270-105666289 None:intergenic 30.0%
TTGAGAATAGCTCTTCATAA+TGG + Chr6:105666952-105666971 None:intergenic 30.0%
TTTGCTTCAAGCTATTGTAA+AGG + Chr6:105665791-105665810 None:intergenic 30.0%
! ATGACATACACATTCTTTTC+TGG + Chr6:105666107-105666126 None:intergenic 30.0%
! ATTTGAAAATGCTTTTAGCC+AGG - Chr6:105666973-105666992 MsG0680035439.01.T01:CDS 30.0%
! CATTTTTGCCATTAATGTGA+AGG + Chr6:105666178-105666197 None:intergenic 30.0%
! GTTTTATGCAAGTATGTTTC+AGG - Chr6:105665469-105665488 MsG0680035439.01.T01:CDS 30.0%
!! TGCTAATTCTTCTTTGAAGT+TGG + Chr6:105666408-105666427 None:intergenic 30.0%
!! TTCTTTGACTCCATTTTTGA+TGG + Chr6:105666293-105666312 None:intergenic 30.0%
!! TTGATGATTTTATGGGAAAG+TGG - Chr6:105666372-105666391 MsG0680035439.01.T01:CDS 30.0%
!!! AAGAGACTTGTTTTAGCTTT+TGG + Chr6:105665839-105665858 None:intergenic 30.0%
!!! GACTTTTTTGTATCTTCTTC+TGG + Chr6:105666005-105666024 None:intergenic 30.0%
!!! GATATCTGATTTTAACTGTG+GGG + Chr6:105665359-105665378 None:intergenic 30.0%
!!! GGATATCTGATTTTAACTGT+GGG + Chr6:105665360-105665379 None:intergenic 30.0%
AAAACAAGTCTCTTCAGAGA+GGG - Chr6:105665845-105665864 MsG0680035439.01.T01:CDS 35.0%
AATGGTATAGGATTGTTGTG+GGG + Chr6:105665326-105665345 None:intergenic 35.0%
ACAACAATCCTATACCATTG+TGG - Chr6:105665327-105665346 MsG0680035439.01.T01:CDS 35.0%
ACAATGGTATAGGATTGTTG+TGG + Chr6:105665328-105665347 None:intergenic 35.0%
ACACAAAGCTTATCCAACAA+TGG - Chr6:105666202-105666221 MsG0680035439.01.T01:CDS 35.0%
AGATACAAAAAAGTCATGGG+CGG - Chr6:105666010-105666029 MsG0680035439.01.T01:CDS 35.0%
AGCTTATCCAACAATGGAAA+AGG - Chr6:105666208-105666227 MsG0680035439.01.T01:CDS 35.0%
AGCTTCGACATTTATGATCT+TGG + Chr6:105665901-105665920 None:intergenic 35.0%
AGTTTGAACAAACCTATCCA+TGG - Chr6:105666660-105666679 MsG0680035439.01.T01:intron 35.0%
ATCAATTCCTTGGATATTCC+TGG + Chr6:105666485-105666504 None:intergenic 35.0%
ATGCAAGAAGAAAAGGCAAA+AGG - Chr6:105667115-105667134 MsG0680035439.01.T01:CDS 35.0%
ATTGCAAGCCTTCACATTAA+TGG - Chr6:105666167-105666186 MsG0680035439.01.T01:CDS 35.0%
CAACAATCCTATACCATTGT+GGG - Chr6:105665328-105665347 MsG0680035439.01.T01:CDS 35.0%
CAACACTTCTCGAAATACAA+AGG - Chr6:105667025-105667044 MsG0680035439.01.T01:CDS 35.0%
CAATGGTATAGGATTGTTGT+GGG + Chr6:105665327-105665346 None:intergenic 35.0%
CATCCAATGCTTTCTGAATT+TGG + Chr6:105666767-105666786 None:intergenic 35.0%
CCAAGAACAGTCATCAAAAT+AGG - Chr6:105666716-105666735 MsG0680035439.01.T01:intron 35.0%
CGACATTTATGATCTTGGTT+AGG + Chr6:105665896-105665915 None:intergenic 35.0%
GTAAAAGCTAATACAGTTCC+AGG - Chr6:105666464-105666483 MsG0680035439.01.T01:CDS 35.0%
GTCAAAGAAAAAGATCTCAG+TGG - Chr6:105666304-105666323 MsG0680035439.01.T01:CDS 35.0%
TAAAACAAGTCTCTTCAGAG+AGG - Chr6:105665844-105665863 MsG0680035439.01.T01:CDS 35.0%
TCTTCTTGCATTGTGATTGT+CGG + Chr6:105667106-105667125 None:intergenic 35.0%
TGGTAGAACCATATCTGATA+AGG + Chr6:105666835-105666854 None:intergenic 35.0%
TTCTCCTTCTTCAAGATACA+CGG + Chr6:105666540-105666559 None:intergenic 35.0%
! ACAAAGGGCATATCTGTAAA+TGG - Chr6:105667041-105667060 MsG0680035439.01.T01:CDS 35.0%
! ACTGATTCAACTTATGCTAG+CGG - Chr6:105665607-105665626 MsG0680035439.01.T01:CDS 35.0%
! ACTGTATCACCAATCTCTTT+TGG + Chr6:105666593-105666612 None:intergenic 35.0%
! ATCTTTGATGGTCCAATGAA+AGG - Chr6:105666125-105666144 MsG0680035439.01.T01:CDS 35.0%
! ATGGATAGGTTTGTTCAAAC+TGG + Chr6:105666661-105666680 None:intergenic 35.0%
! ATTTTATGGGAAAGTGGAGA+TGG - Chr6:105666378-105666397 MsG0680035439.01.T01:CDS 35.0%
! GTGTGCAAAAAAGAAAGTGT+CGG - Chr6:105667063-105667082 MsG0680035439.01.T01:CDS 35.0%
! TCTTTTGCCTTTTCCATTGT+TGG + Chr6:105666218-105666237 None:intergenic 35.0%
! TTTTATCTGATCGCCCATTA+GGG + Chr6:105665381-105665400 None:intergenic 35.0%
! TTTTCATCAACATCTTCAGC+AGG - Chr6:105665972-105665991 MsG0680035439.01.T01:CDS 35.0%
!! AACAAGGAAGACTTGTTAGA+TGG - Chr6:105665662-105665681 MsG0680035439.01.T01:CDS 35.0%
!! CAAATTCAGAAAGCATTGGA+TGG - Chr6:105666765-105666784 MsG0680035439.01.T01:intron 35.0%
!! CCCAACTTTTGTTTACCATT+AGG + Chr6:105665271-105665290 None:intergenic 35.0%
!!! CCTATTTTGATGACTGTTCT+TGG + Chr6:105666719-105666738 None:intergenic 35.0%
!!! CTTGTTTTAGCTTTTGGCTA+TGG + Chr6:105665833-105665852 None:intergenic 35.0%
!!! GGGATATCTGATTTTAACTG+TGG + Chr6:105665361-105665380 None:intergenic 35.0%
AAACAAGTCTCTTCAGAGAG+GGG - Chr6:105665846-105665865 MsG0680035439.01.T01:CDS 40.0%
AAGACCGTGTATCTTGAAGA+AGG - Chr6:105666533-105666552 MsG0680035439.01.T01:CDS 40.0%
ACCCAGTTAATACCACACAT+GGG - Chr6:105666441-105666460 MsG0680035439.01.T01:CDS 40.0%
ACTCCTGTTGAACTTCTTCT+GGG + Chr6:105667000-105667019 None:intergenic 40.0%
CAGATACTCTGACAAGAGAA+TGG - Chr6:105665749-105665768 MsG0680035439.01.T01:CDS 40.0%
CCAATGCTTTCTGAATTTGG+AGG + Chr6:105666764-105666783 None:intergenic 40.0%
GACAGGTCTCTGTAATGTAA+AGG + Chr6:105666874-105666893 None:intergenic 40.0%
GCTGATCTTCCAAAAGAGAT+TGG - Chr6:105666581-105666600 MsG0680035439.01.T01:CDS 40.0%
GTGTATCTTGAAGAAGGAGA+AGG - Chr6:105666539-105666558 MsG0680035439.01.T01:CDS 40.0%
TACAGTTCCAGGAATATCCA+AGG - Chr6:105666475-105666494 MsG0680035439.01.T01:CDS 40.0%
TACCCAGTTAATACCACACA+TGG - Chr6:105666440-105666459 MsG0680035439.01.T01:CDS 40.0%
TCATGGTCTGTGATTCAAAG+AGG - Chr6:105666894-105666913 MsG0680035439.01.T01:intron 40.0%
TTCAAAGAGGAAGGTTTCAG+AGG - Chr6:105666907-105666926 MsG0680035439.01.T01:intron 40.0%
! CATAATGGAGTGTTTGCTTG+AGG + Chr6:105666937-105666956 None:intergenic 40.0%
! CCTCCAAATTCAGAAAGCAT+TGG - Chr6:105666761-105666780 MsG0680035439.01.T01:intron 40.0%
! GTTGGTTCATCTGTTGTTGT+TGG + Chr6:105665924-105665943 None:intergenic 40.0%
! GTTTTATCTGATCGCCCATT+AGG + Chr6:105665382-105665401 None:intergenic 40.0%
!!! ATTAGCTTTTACCCCATGTG+TGG + Chr6:105666456-105666475 None:intergenic 40.0%
!!! CAACTTATGCTAGCGGATTT+TGG - Chr6:105665614-105665633 MsG0680035439.01.T01:CDS 40.0%
AACAAGTCTCTTCAGAGAGG+GGG - Chr6:105665847-105665866 MsG0680035439.01.T01:CDS 45.0%
ACCCCATGTGTGGTATTAAC+TGG + Chr6:105666446-105666465 None:intergenic 45.0%
CACTCCTGTTGAACTTCTTC+TGG + Chr6:105667001-105667020 None:intergenic 45.0%
CATTACAGAGACCTGTCTCA+TGG - Chr6:105666877-105666896 MsG0680035439.01.T01:intron 45.0%
CCCAGTTAATACCACACATG+GGG - Chr6:105666442-105666461 MsG0680035439.01.T01:CDS 45.0%
CCCCATGTGTGGTATTAACT+GGG + Chr6:105666445-105666464 None:intergenic 45.0%
GGTCTGTGATTCAAAGAGGA+AGG - Chr6:105666898-105666917 MsG0680035439.01.T01:intron 45.0%
TGAATCACAGACCATGAGAC+AGG + Chr6:105666891-105666910 None:intergenic 45.0%
TTGGAAGATCAGCGAGTTCT+TGG + Chr6:105666574-105666593 None:intergenic 45.0%
ACAAGTCTCTTCAGAGAGGG+GGG - Chr6:105665848-105665867 MsG0680035439.01.T01:CDS 50.0%
GGTCCCAGAAGAAGTTCAAC+AGG - Chr6:105666994-105667013 MsG0680035439.01.T01:CDS 50.0%
!! GTTGAACTTCTTCTGGGACC+TGG + Chr6:105666994-105667013 None:intergenic 50.0%
GGTTGCGCCCACAATGGTAT+AGG + Chr6:105665338-105665357 None:intergenic 55.0%
TGTAGATCGACAGCGTCGCT+TGG + Chr6:105666083-105666102 None:intergenic 55.0%
GATCGACAGCGTCGCTTGGT+TGG + Chr6:105666079-105666098 None:intergenic 60.0%
CTGTGGGGTTGCGCCCACAA+TGG + Chr6:105665344-105665363 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 105665256 105667147 105665256 ID=MsG0680035439.01;Name=MsG0680035439.01
Chr6 mRNA 105665256 105667147 105665256 ID=MsG0680035439.01.T01;Parent=MsG0680035439.01;Name=MsG0680035439.01.T01;_AED=0.90;_eAED=0.91;_QI=0|0|0|1|1|1|2|0|539
Chr6 exon 105666924 105667147 105666924 ID=MsG0680035439.01.T01:exon:11329;Parent=MsG0680035439.01.T01
Chr6 exon 105665256 105666651 105665256 ID=MsG0680035439.01.T01:exon:11328;Parent=MsG0680035439.01.T01
Chr6 CDS 105666924 105667147 105666924 ID=MsG0680035439.01.T01:cds;Parent=MsG0680035439.01.T01
Chr6 CDS 105665256 105666651 105665256 ID=MsG0680035439.01.T01:cds;Parent=MsG0680035439.01.T01
Gene Sequence

>MsG0680035439.01.T01

ATGAGAGCTCTACCTAATGGTAAACAAAAGTTGGGATTAAATCTCAATGGATATGTTGAGGATGAAACCCCACAACAATCCTATACCATTGTGGGCGCAACCCCACAGTTAAAATCAGATATCCCTAATGGGCGATCAGATAAAACATCAGTTTCAACTGATACAAAACTTGATTATTCAAGTAATAACATCCGAATTAAGGATAAAGATCTTGTTTTATGCAAATACTCTGACAAGAGAATGGAGCAAGCTTTAAAAGTCCTTTACAATAGCTTGAAGCAAAAAGATGAACAGATTGAAATCCATAGCCAAAAGCTAAAACAAGTCTCTTCAGAGAGGGGGGAGATGATTAAAATGATCGAAAGCCTAACCAAGATCATAAATGTCGAAGCTCCAACAACAACAGATGAACCAACAAAAAAGACTTTGAATGAACAACAAAGTTTTTCATCAACATCTTCAGCAGGCTCTATGCCAGAAGAAGATACAAAAAAGTCATGGGCGGACAAAGTCGAGCAAGAAGATGAAGAGTCAAAAAATGGCTTAGACCAACCAAGCGACGCTGTCGATCTACAACCAGAAAAGAATGTGTATGTCATCTTTGATGGTCCAATGAAAGGAATTTACAACAATTGGGCAATTGCAAGCCTTCACATTAATGGCAAAAATGTCAGACACAAAGCTTATCCAACAATGGAAAAGGCAAAAGAAGCTTATAAGGCCTCCTATAAAGAAATGACCATTGCTAAAGAAATTGGTCAACCATCAAAAATGGAGTCAAAGAAAAAGATCTCAGTGGGATCCATAATAAATCTCCAGAAAGAAAAAAATAAGCCAAAAACTCTTGATGATTTTATGGGAAAGTGGAGATGGCTAGCCAACTTCAAAGAAGAATTAGCACTTGAATGTTTTTACCCAGTTAATACCACACATGGGGTAAAAGCTAATACAGTTCCAGGAATATCCAAGGAATTGATTAAAGAATTTTATGACTATGGAATGCTTAAGACCGTGTATCTTGAAGAAGGAGAAGGTCGAAGATTCCAAGAACTCGCTGATCTTCCAAAAGAGATTGGTGATACAGTAAAGAGATTTAATGATTTCCTTGCTAAAGGAAGAGAAATTTATCTCCAGTTTGAACAAACCTATCCATGGTTTTTTGAAGAAAATAATTTCATGGCTGTAAAACCAAGAACAGTCATCAAAATAGGAATTTCAAATAAAACTTATCTACCTCCAAATTCAGAAAGCATTGGATGGACAATAGATTCGTTCATTTATCAAATGAAACGTTTTTATGATAACCTTATCAGATATGGTTCTACCATTATTAATTATAAGGTCCTTTACATTACAGAGACCTGTCTCATGGTCTGTGATTCAAAGAGGAAGGTTTCAGAGGAACACCTCAAGCAAACACTCCATTATGAAGAGCTATTCTCAAAATTTGAAAATGCTTTTAGCCAGGTCCCAGAAGAAGTTCAACAGGAGTGCTGTCAACACTTCTCGAAATACAAAGGGCATATCTGTAAATGGTGTGCAAAAAAGAAAGTGTCGGTAGAAGAAAACAAAATACCGACAATCACAATGCAAGAAGAAAAGGCAAAAGGAAAAGCCTAA
Protein sequence

>MsG0680035439.01.T01

MRALPNGKQKLGLNLNGYVEDETPQQSYTIVGATPQLKSDIPNGRSDKTSVSTDTKLDYSSNNIRIKDKDLVLCKYSDKRMEQALKVLYNSLKQKDEQIEIHSQKLKQVSSERGEMIKMIESLTKIINVEAPTTTDEPTKKTLNEQQSFSSTSSAGSMPEEDTKKSWADKVEQEDEESKNGLDQPSDAVDLQPEKNVYVIFDGPMKGIYNNWAIASLHINGKNVRHKAYPTMEKAKEAYKASYKEMTIAKEIGQPSKMESKKKISVGSIINLQKEKNKPKTLDDFMGKWRWLANFKEELALECFYPVNTTHGVKANTVPGISKELIKEFYDYGMLKTVYLEEGEGRRFQELADLPKEIGDTVKRFNDFLAKGREIYLQFEQTYPWFFEENNFMAVKPRTVIKIGISNKTYLPPNSESIGWTIDSFIYQMKRFYDNLIRYGSTIINYKVLYITETCLMVCDSKRKVSEEHLKQTLHYEELFSKFENAFSQVPEEVQQECCQHFSKYKGHICKWCAKKKVSVEENKIPTITMQEEKAKGKA*