Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006875.01.T01 | RHN72070.1 | 70.312 | 192 | 7 | 1 | 1 | 142 | 37 | 228 | 3.54E-84 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006875.01.T01 | Q9FJ47 | 45.361 | 194 | 54 | 2 | 1 | 142 | 153 | 346 | 7.99E-50 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006875.01.T01 | A0A396J2L5 | 70.312 | 192 | 7 | 1 | 1 | 142 | 37 | 228 | 1.69e-84 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048515.01 | MsG0280006875.01 | 0.802080 | 6.647417e-49 | 3.226624e-46 |
| MsG0180000649.01 | MsG0280006875.01 | 0.836541 | 8.807350e-57 | 1.113308e-53 |
| MsG0180001752.01 | MsG0280006875.01 | 0.802975 | 4.346440e-49 | 2.158318e-46 |
| MsG0180005953.01 | MsG0280006875.01 | 0.811511 | 6.748335e-51 | 4.185559e-48 |
| MsG0280006826.01 | MsG0280006875.01 | 0.901854 | 1.758274e-78 | 2.421741e-74 |
| MsG0280006873.01 | MsG0280006875.01 | 0.920152 | 1.835793e-87 | 6.127369e-83 |
| MsG0280006875.01 | MsG0280007547.01 | 0.801244 | 9.865432e-49 | 4.688566e-46 |
| MsG0280006875.01 | MsG0380012161.01 | 0.810005 | 1.429145e-50 | 8.517867e-48 |
| MsG0280006875.01 | MsG0380012312.01 | 0.839815 | 1.263993e-57 | 1.765969e-54 |
| MsG0280006875.01 | MsG0380014891.01 | 0.845066 | 5.119522e-59 | 8.430957e-56 |
| MsG0280006875.01 | MsG0380014892.01 | 0.800864 | 1.180054e-48 | 5.554465e-46 |
| MsG0280006875.01 | MsG0380014899.01 | 0.834571 | 2.775886e-56 | 3.307651e-53 |
| MsG0280006875.01 | MsG0480018677.01 | 0.851327 | 9.539764e-61 | 1.924175e-57 |
| MsG0280006875.01 | MsG0480020574.01 | 0.845096 | 5.023801e-59 | 8.280863e-56 |
| MsG0280006875.01 | MsG0480020887.01 | 0.813579 | 2.382932e-51 | 1.562157e-48 |
| MsG0280006875.01 | MsG0480024030.01 | 0.831400 | 1.705234e-55 | 1.848371e-52 |
| MsG0280006875.01 | MsG0680034013.01 | 0.817918 | 2.569377e-52 | 1.895983e-49 |
| MsG0280006875.01 | MsG0680035439.01 | 0.806776 | 6.978292e-50 | 3.820542e-47 |
| MsG0280006875.01 | MsG0780039438.01 | 0.825463 | 4.623486e-54 | 4.216997e-51 |
| MsG0280006875.01 | MsG0780041475.01 | 0.819241 | 1.287637e-52 | 9.854750e-50 |
| MsG0280006875.01 | MsG0880042656.01 | 0.811872 | 5.633304e-51 | 3.527220e-48 |
| MsG0280006875.01 | MsG0880045765.01 | 0.821966 | 3.048424e-53 | 2.517258e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006875.01.T01 | MTR_2g015850 | 70.312 | 192 | 7 | 1 | 1 | 142 | 173 | 364 | 9.03e-88 | 260 |
| MsG0280006875.01.T01 | MTR_2g015840 | 60.563 | 142 | 43 | 2 | 1 | 142 | 144 | 272 | 6.77e-56 | 176 |
| MsG0280006875.01.T01 | MTR_4g107930 | 46.154 | 195 | 51 | 2 | 1 | 141 | 150 | 344 | 7.74e-52 | 167 |
| MsG0280006875.01.T01 | MTR_4g079470 | 46.154 | 195 | 51 | 2 | 1 | 141 | 150 | 344 | 3.35e-51 | 166 |
| MsG0280006875.01.T01 | MTR_4g079800 | 45.128 | 195 | 53 | 2 | 1 | 141 | 150 | 344 | 4.11e-51 | 166 |
| MsG0280006875.01.T01 | MTR_4g079770 | 46.154 | 195 | 51 | 2 | 1 | 141 | 150 | 344 | 4.57e-51 | 166 |
| MsG0280006875.01.T01 | MTR_5g022560 | 46.154 | 195 | 51 | 2 | 1 | 141 | 149 | 343 | 1.25e-50 | 164 |
| MsG0280006875.01.T01 | MTR_4g047610 | 45.641 | 195 | 52 | 2 | 1 | 141 | 148 | 342 | 5.07e-50 | 163 |
| MsG0280006875.01.T01 | MTR_7g078600 | 42.708 | 192 | 59 | 2 | 2 | 142 | 147 | 338 | 2.60e-45 | 150 |
| MsG0280006875.01.T01 | MTR_4g104370 | 41.361 | 191 | 60 | 2 | 2 | 140 | 152 | 342 | 2.87e-44 | 148 |
| MsG0280006875.01.T01 | MTR_4g080360 | 43.229 | 192 | 56 | 3 | 2 | 140 | 149 | 340 | 3.60e-44 | 148 |
| MsG0280006875.01.T01 | MTR_1g023810 | 41.579 | 190 | 58 | 4 | 2 | 139 | 73 | 261 | 8.33e-43 | 142 |
| MsG0280006875.01.T01 | MTR_3g075390 | 41.146 | 192 | 60 | 3 | 2 | 140 | 152 | 343 | 3.14e-42 | 143 |
| MsG0280006875.01.T01 | MTR_4g080730 | 41.451 | 193 | 59 | 3 | 2 | 141 | 148 | 339 | 1.60e-41 | 141 |
| MsG0280006875.01.T01 | MTR_4g080700 | 40.933 | 193 | 60 | 3 | 2 | 141 | 148 | 339 | 3.72e-41 | 140 |
| MsG0280006875.01.T01 | MTR_4g079440 | 41.538 | 195 | 59 | 4 | 2 | 142 | 152 | 345 | 4.23e-40 | 137 |
| MsG0280006875.01.T01 | MTR_3g116080 | 40.933 | 193 | 60 | 4 | 2 | 141 | 156 | 347 | 2.92e-39 | 135 |
| MsG0280006875.01.T01 | MTR_2g090890 | 39.378 | 193 | 62 | 4 | 2 | 140 | 144 | 335 | 5.49e-39 | 134 |
| MsG0280006875.01.T01 | MTR_3g102220 | 41.451 | 193 | 58 | 5 | 2 | 140 | 169 | 360 | 1.13e-38 | 136 |
| MsG0280006875.01.T01 | MTR_3g112430 | 40.933 | 193 | 60 | 4 | 2 | 141 | 150 | 341 | 1.60e-38 | 135 |
| MsG0280006875.01.T01 | MTR_7g079230 | 39.062 | 192 | 66 | 2 | 2 | 142 | 145 | 336 | 1.75e-38 | 133 |
| MsG0280006875.01.T01 | MTR_2g075830 | 43.077 | 195 | 57 | 3 | 1 | 141 | 146 | 340 | 2.98e-38 | 132 |
| MsG0280006875.01.T01 | MTR_1g107550 | 42.487 | 193 | 56 | 5 | 2 | 140 | 163 | 354 | 6.85e-38 | 134 |
| MsG0280006875.01.T01 | MTR_1g018840 | 40.415 | 193 | 60 | 5 | 2 | 140 | 169 | 360 | 1.37e-36 | 130 |
| MsG0280006875.01.T01 | MTR_4g094918 | 40.415 | 193 | 60 | 5 | 2 | 140 | 149 | 340 | 2.67e-36 | 127 |
| MsG0280006875.01.T01 | MTR_1g018840 | 40.415 | 193 | 60 | 5 | 2 | 140 | 169 | 360 | 3.46e-36 | 129 |
| MsG0280006875.01.T01 | MTR_7g078580 | 53.608 | 97 | 45 | 0 | 44 | 140 | 4 | 100 | 1.17e-33 | 115 |
| MsG0280006875.01.T01 | MTR_2g083930 | 36.410 | 195 | 70 | 4 | 2 | 142 | 150 | 344 | 3.15e-33 | 119 |
| MsG0280006875.01.T01 | MTR_2g067560 | 41.489 | 188 | 55 | 7 | 1 | 134 | 136 | 322 | 7.63e-33 | 122 |
| MsG0280006875.01.T01 | MTR_2g066980 | 41.317 | 167 | 67 | 6 | 2 | 142 | 158 | 319 | 4.22e-31 | 113 |
| MsG0280006875.01.T01 | MTR_2g064475 | 40.513 | 195 | 56 | 9 | 2 | 141 | 162 | 351 | 3.16e-30 | 112 |
| MsG0280006875.01.T01 | MTR_7g079130 | 53.846 | 91 | 41 | 1 | 51 | 140 | 6 | 96 | 2.89e-29 | 102 |
| MsG0280006875.01.T01 | MTR_2g016270 | 34.021 | 194 | 73 | 5 | 2 | 141 | 148 | 340 | 1.13e-25 | 100 |
| MsG0280006875.01.T01 | MTR_2g016180 | 34.021 | 194 | 73 | 5 | 2 | 141 | 163 | 355 | 1.13e-25 | 101 |
| MsG0280006875.01.T01 | MTR_2g067900 | 36.126 | 191 | 68 | 5 | 2 | 139 | 134 | 323 | 3.46e-24 | 95.5 |
| MsG0280006875.01.T01 | MTR_2g015930 | 33.333 | 192 | 74 | 5 | 2 | 140 | 167 | 357 | 1.08e-23 | 94.7 |
| MsG0280006875.01.T01 | MTR_8g086470 | 35.938 | 192 | 67 | 6 | 3 | 140 | 166 | 355 | 1.48e-23 | 94.4 |
| MsG0280006875.01.T01 | MTR_4g065077 | 35.938 | 192 | 67 | 6 | 3 | 140 | 166 | 355 | 1.54e-23 | 94.4 |
| MsG0280006875.01.T01 | MTR_4g125300 | 47.748 | 111 | 48 | 6 | 37 | 142 | 244 | 349 | 2.08e-22 | 90.9 |
| MsG0280006875.01.T01 | MTR_2g016380 | 39.024 | 123 | 69 | 4 | 23 | 141 | 15 | 135 | 2.78e-19 | 81.3 |
| MsG0280006875.01.T01 | MTR_2g015920 | 44.000 | 100 | 51 | 3 | 45 | 140 | 259 | 357 | 6.02e-19 | 81.6 |
| MsG0280006875.01.T01 | MTR_4g072790 | 33.775 | 151 | 68 | 4 | 3 | 122 | 156 | 305 | 7.74e-19 | 80.9 |
| MsG0280006875.01.T01 | MTR_4g072340 | 30.968 | 155 | 71 | 4 | 3 | 122 | 156 | 309 | 9.03e-17 | 75.5 |
| MsG0280006875.01.T01 | MTR_4g073660 | 30.968 | 155 | 71 | 4 | 3 | 122 | 155 | 308 | 1.11e-16 | 75.1 |
| MsG0280006875.01.T01 | MTR_7g111060 | 37.634 | 93 | 52 | 3 | 43 | 133 | 242 | 330 | 2.98e-15 | 71.2 |
| MsG0280006875.01.T01 | MTR_7g111050 | 36.842 | 95 | 58 | 2 | 43 | 135 | 239 | 333 | 4.68e-15 | 70.9 |
| MsG0280006875.01.T01 | MTR_7g079260 | 48.611 | 72 | 21 | 2 | 67 | 138 | 7 | 62 | 1.52e-14 | 65.5 |
| MsG0280006875.01.T01 | MTR_7g078630 | 51.613 | 62 | 30 | 0 | 40 | 101 | 889 | 950 | 4.16e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006875.01.T01 | AT3G49340 | 46.842 | 190 | 51 | 3 | 1 | 140 | 150 | 339 | 1.11e-51 | 167 |
| MsG0280006875.01.T01 | AT2G34080 | 46.073 | 191 | 52 | 2 | 1 | 140 | 153 | 343 | 1.55e-51 | 167 |
| MsG0280006875.01.T01 | AT5G45890 | 45.361 | 194 | 54 | 2 | 1 | 142 | 153 | 346 | 8.14e-51 | 165 |
| MsG0280006875.01.T01 | AT2G27420 | 44.103 | 195 | 53 | 3 | 2 | 140 | 152 | 346 | 2.98e-47 | 156 |
| MsG0280006875.01.T01 | AT3G48340 | 45.833 | 192 | 50 | 4 | 2 | 140 | 152 | 342 | 5.87e-46 | 153 |
| MsG0280006875.01.T01 | AT3G48350 | 43.299 | 194 | 56 | 3 | 2 | 141 | 150 | 343 | 2.26e-45 | 151 |
| MsG0280006875.01.T01 | AT1G29080 | 42.932 | 191 | 57 | 3 | 2 | 140 | 154 | 344 | 1.02e-44 | 149 |
| MsG0280006875.01.T01 | AT1G29090 | 43.229 | 192 | 57 | 3 | 1 | 140 | 162 | 353 | 6.62e-44 | 147 |
| MsG0280006875.01.T01 | AT1G20850 | 42.487 | 193 | 57 | 4 | 2 | 141 | 162 | 353 | 1.08e-41 | 142 |
| MsG0280006875.01.T01 | AT5G50260 | 41.667 | 192 | 59 | 3 | 2 | 140 | 150 | 341 | 1.31e-41 | 142 |
| MsG0280006875.01.T01 | AT3G19390 | 42.784 | 194 | 56 | 4 | 2 | 141 | 153 | 345 | 7.77e-41 | 141 |
| MsG0280006875.01.T01 | AT4G36880 | 41.969 | 193 | 57 | 5 | 2 | 140 | 169 | 360 | 8.27e-41 | 140 |
| MsG0280006875.01.T01 | AT4G35350 | 41.451 | 193 | 59 | 4 | 2 | 141 | 161 | 352 | 8.43e-41 | 139 |
| MsG0280006875.01.T01 | AT4G11310 | 40.104 | 192 | 61 | 3 | 2 | 140 | 161 | 351 | 2.20e-40 | 139 |
| MsG0280006875.01.T01 | AT1G06260 | 44.271 | 192 | 53 | 4 | 2 | 140 | 151 | 341 | 3.33e-40 | 137 |
| MsG0280006875.01.T01 | AT4G11320 | 39.583 | 192 | 62 | 3 | 2 | 140 | 168 | 358 | 3.54e-40 | 138 |
| MsG0280006875.01.T01 | AT4G11320 | 39.583 | 192 | 62 | 3 | 2 | 140 | 168 | 358 | 3.54e-40 | 138 |
| MsG0280006875.01.T01 | AT3G19400 | 42.857 | 196 | 55 | 4 | 2 | 141 | 154 | 348 | 9.35e-40 | 137 |
| MsG0280006875.01.T01 | AT4G23520 | 41.969 | 193 | 57 | 4 | 2 | 140 | 157 | 348 | 6.53e-39 | 134 |
| MsG0280006875.01.T01 | AT5G43060 | 41.146 | 192 | 59 | 4 | 2 | 140 | 162 | 352 | 1.72e-38 | 135 |
| MsG0280006875.01.T01 | AT1G09850 | 39.062 | 192 | 63 | 4 | 2 | 140 | 142 | 332 | 4.38e-36 | 129 |
| MsG0280006875.01.T01 | AT1G47128 | 38.021 | 192 | 65 | 4 | 2 | 140 | 161 | 351 | 6.67e-36 | 129 |
| MsG0280006875.01.T01 | AT1G29110 | 54.286 | 105 | 45 | 3 | 40 | 142 | 231 | 334 | 3.95e-31 | 114 |
| MsG0280006875.01.T01 | AT3G43960 | 40.625 | 128 | 65 | 3 | 14 | 140 | 228 | 345 | 7.12e-26 | 100 |
| MsG0280006875.01.T01 | AT5G60360 | 36.869 | 198 | 63 | 8 | 2 | 142 | 165 | 357 | 1.25e-25 | 99.8 |
| MsG0280006875.01.T01 | AT5G60360 | 35.859 | 198 | 64 | 7 | 2 | 142 | 165 | 356 | 3.42e-24 | 95.9 |
| MsG0280006875.01.T01 | AT3G45310 | 35.354 | 198 | 66 | 8 | 2 | 142 | 165 | 357 | 7.99e-23 | 92.4 |
| MsG0280006875.01.T01 | AT5G60360 | 35.795 | 176 | 55 | 6 | 2 | 120 | 165 | 339 | 1.01e-21 | 89.4 |
| MsG0280006875.01.T01 | AT3G45310 | 34.343 | 198 | 67 | 7 | 2 | 142 | 165 | 356 | 2.10e-21 | 88.6 |
| MsG0280006875.01.T01 | AT1G02305 | 35.052 | 97 | 62 | 1 | 40 | 135 | 243 | 339 | 4.76e-16 | 73.6 |
| MsG0280006875.01.T01 | AT1G02300 | 39.130 | 92 | 50 | 3 | 44 | 133 | 263 | 350 | 1.65e-15 | 72.4 |
| MsG0280006875.01.T01 | AT3G48350 | 38.211 | 123 | 22 | 3 | 2 | 70 | 150 | 272 | 5.08e-15 | 70.5 |
| MsG0280006875.01.T01 | AT4G01610 | 34.343 | 99 | 60 | 2 | 36 | 133 | 236 | 330 | 1.92e-14 | 69.3 |
| MsG0280006875.01.T01 | AT4G01610 | 34.343 | 99 | 60 | 2 | 36 | 133 | 236 | 330 | 2.02e-14 | 68.9 |
Find 33 sgRNAs with CRISPR-Local
Find 44 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATGGGAGATGTTTATTC+AGG | 0.305565 | 2:+7473329 | MsG0280006875.01.T01:CDS |
| ATTGGTTGATTAAGAATTCT+TGG | 0.312011 | 2:+7473423 | MsG0280006875.01.T01:CDS |
| AGAATTCTTGGGGTAAAGAT+TGG | 0.334902 | 2:+7473435 | MsG0280006875.01.T01:CDS |
| TTGGTTGATTAAGAATTCTT+GGG | 0.374775 | 2:+7473424 | MsG0280006875.01.T01:CDS |
| GAATTCTTGGGGTAAAGATT+GGG | 0.376941 | 2:+7473436 | MsG0280006875.01.T01:CDS |
| CTCATTATCTGAGCAACAAT+TGG | 0.401955 | 2:+7473038 | MsG0280006875.01.T01:CDS |
| ACTGCAATGCCAACTGATAC+TGG | 0.406208 | 2:-7473287 | None:intergenic |
| TAGCAGTTGTTGTTCATCAT+TGG | 0.413217 | 2:-7473246 | None:intergenic |
| TCAGTCGTAGCTGCTGTAGA+AGG | 0.446164 | 2:+7472985 | MsG0280006875.01.T01:CDS |
| GGTAAAGATTGGGGTGAAGA+AGG | 0.460104 | 2:+7473446 | MsG0280006875.01.T01:CDS |
| TGATGAATTTCAACATTACA+TGG | 0.464191 | 2:+7473313 | MsG0280006875.01.T01:CDS |
| GCAGTTACTGCAGTTGGTTA+CGG | 0.478465 | 2:+7473377 | MsG0280006875.01.T01:CDS |
| AGTTGTTGTTCATCATTGGC+AGG | 0.496843 | 2:-7473242 | None:intergenic |
| AACCATGCAGTTACTGCAGT+TGG | 0.506721 | 2:+7473371 | MsG0280006875.01.T01:CDS |
| AGGTTACATGAAGTTGTTGA+GGG | 0.508816 | 2:+7473466 | MsG0280006875.01.T01:CDS |
| GCAATGCCACATTGACCTCC+TGG | 0.513337 | 2:-7473500 | None:intergenic |
| TTGAGGGAAAGTGGTGAACC+AGG | 0.520538 | 2:+7473482 | MsG0280006875.01.T01:CDS |
| AATTCTTGGGGTAAAGATTG+GGG | 0.530447 | 2:+7473437 | MsG0280006875.01.T01:CDS |
| GGTTACGGTGTAAGTGAAGA+TGG | 0.532156 | 2:+7473392 | MsG0280006875.01.T01:CDS |
| GTGAAGATGGAACTAAGTAT+TGG | 0.533019 | 2:+7473405 | MsG0280006875.01.T01:CDS |
| ATGAAGTTGTTGAGGGAAAG+TGG | 0.542145 | 2:+7473473 | MsG0280006875.01.T01:CDS |
| AAGGTTACATGAAGTTGTTG+AGG | 0.582698 | 2:+7473465 | MsG0280006875.01.T01:CDS |
| GACTGCGATGAACAGACAAT+GGG | 0.586011 | 2:+7473063 | MsG0280006875.01.T01:CDS |
| TGGTTGATTAAGAATTCTTG+GGG | 0.586376 | 2:+7473425 | MsG0280006875.01.T01:CDS |
| GATGTTTATTCAGGAACATG+TGG | 0.602261 | 2:+7473338 | MsG0280006875.01.T01:CDS |
| AACCAACTGCAGTAACTGCA+TGG | 0.607601 | 2:-7473373 | None:intergenic |
| GTATCAGTTGGCATTGCAGT+CGG | 0.623362 | 2:+7473290 | MsG0280006875.01.T01:CDS |
| GATGAATTTCAACATTACAT+GGG | 0.623570 | 2:+7473314 | MsG0280006875.01.T01:CDS |
| GCACAACAACCAGTATCAGT+TGG | 0.635741 | 2:+7473278 | MsG0280006875.01.T01:CDS |
| GGTGCTGTGAAAATCAAGAC+TGG | 0.639937 | 2:+7473006 | MsG0280006875.01.T01:CDS |
| TGACTGCGATGAACAGACAA+TGG | 0.644680 | 2:+7473062 | MsG0280006875.01.T01:CDS |
| GGTGAACCAGGAGGTCAATG+TGG | 0.664219 | 2:+7473494 | MsG0280006875.01.T01:CDS |
| AGGGAAAGTGGTGAACCAGG+AGG | 0.728920 | 2:+7473485 | MsG0280006875.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATTTGATCATTTAAT+TGG | - | Chr2:7473190-7473209 | None:intergenic | 15.0% |
| !! | AAATATATAATACAAACCCA+AGG | + | Chr2:7473116-7473135 | MsG0280006875.01.T01:intron | 20.0% |
| !! | GGTTTGTATTATATATTTGA+AGG | - | Chr2:7473114-7473133 | None:intergenic | 20.0% |
| ! | ATTGGTTGATTAAGAATTCT+TGG | + | Chr2:7473423-7473442 | MsG0280006875.01.T01:CDS | 25.0% |
| ! | GATGAATTTCAACATTACAT+GGG | + | Chr2:7473314-7473333 | MsG0280006875.01.T01:CDS | 25.0% |
| ! | TGATGAATTTCAACATTACA+TGG | + | Chr2:7473313-7473332 | MsG0280006875.01.T01:CDS | 25.0% |
| ! | TTGGTTGATTAAGAATTCTT+GGG | + | Chr2:7473424-7473443 | MsG0280006875.01.T01:CDS | 25.0% |
| ACAGATTATCCATATCAAGA+AGG | + | Chr2:7473152-7473171 | MsG0280006875.01.T01:intron | 30.0% | |
| TGGTTGATTAAGAATTCTTG+GGG | + | Chr2:7473425-7473444 | MsG0280006875.01.T01:CDS | 30.0% | |
| AAGGTTACATGAAGTTGTTG+AGG | + | Chr2:7473465-7473484 | MsG0280006875.01.T01:CDS | 35.0% | |
| AATTCTTGGGGTAAAGATTG+GGG | + | Chr2:7473437-7473456 | MsG0280006875.01.T01:CDS | 35.0% | |
| AGAATTCTTGGGGTAAAGAT+TGG | + | Chr2:7473435-7473454 | MsG0280006875.01.T01:CDS | 35.0% | |
| AGGTTACATGAAGTTGTTGA+GGG | + | Chr2:7473466-7473485 | MsG0280006875.01.T01:CDS | 35.0% | |
| CTCATTATCTGAGCAACAAT+TGG | + | Chr2:7473038-7473057 | MsG0280006875.01.T01:CDS | 35.0% | |
| GAATTCTTGGGGTAAAGATT+GGG | + | Chr2:7473436-7473455 | MsG0280006875.01.T01:CDS | 35.0% | |
| GATGTTTATTCAGGAACATG+TGG | + | Chr2:7473338-7473357 | MsG0280006875.01.T01:CDS | 35.0% | |
| GTGAAGATGGAACTAAGTAT+TGG | + | Chr2:7473405-7473424 | MsG0280006875.01.T01:CDS | 35.0% | |
| TACATGGGAGATGTTTATTC+AGG | + | Chr2:7473329-7473348 | MsG0280006875.01.T01:CDS | 35.0% | |
| TGTCTCACTAACAATACCTT+GGG | - | Chr2:7473135-7473154 | None:intergenic | 35.0% | |
| ! | TAGCAGTTGTTGTTCATCAT+TGG | - | Chr2:7473249-7473268 | None:intergenic | 35.0% |
| ATGAAGTTGTTGAGGGAAAG+TGG | + | Chr2:7473473-7473492 | MsG0280006875.01.T01:CDS | 40.0% | |
| CTGTCTCACTAACAATACCT+TGG | - | Chr2:7473136-7473155 | None:intergenic | 40.0% | |
| GTCTGACTACCTTCTTGATA+TGG | - | Chr2:7473164-7473183 | None:intergenic | 40.0% | |
| ! | AGTTGTTGTTCATCATTGGC+AGG | - | Chr2:7473245-7473264 | None:intergenic | 40.0% |
| AACCAACTGCAGTAACTGCA+TGG | - | Chr2:7473376-7473395 | None:intergenic | 45.0% | |
| AACCATGCAGTTACTGCAGT+TGG | + | Chr2:7473371-7473390 | MsG0280006875.01.T01:CDS | 45.0% | |
| ACTGCAATGCCAACTGATAC+TGG | - | Chr2:7473290-7473309 | None:intergenic | 45.0% | |
| GACTGCGATGAACAGACAAT+GGG | + | Chr2:7473063-7473082 | MsG0280006875.01.T01:CDS | 45.0% | |
| GCACAACAACCAGTATCAGT+TGG | + | Chr2:7473278-7473297 | MsG0280006875.01.T01:CDS | 45.0% | |
| GCAGTTACTGCAGTTGGTTA+CGG | + | Chr2:7473377-7473396 | MsG0280006875.01.T01:CDS | 45.0% | |
| GGTAAAGATTGGGGTGAAGA+AGG | + | Chr2:7473446-7473465 | MsG0280006875.01.T01:CDS | 45.0% | |
| GGTTACGGTGTAAGTGAAGA+TGG | + | Chr2:7473392-7473411 | MsG0280006875.01.T01:CDS | 45.0% | |
| GTATCAGTTGGCATTGCAGT+CGG | + | Chr2:7473290-7473309 | MsG0280006875.01.T01:CDS | 45.0% | |
| TGACTGCGATGAACAGACAA+TGG | + | Chr2:7473062-7473081 | MsG0280006875.01.T01:CDS | 45.0% | |
| ! | GGTGCTGTGAAAATCAAGAC+TGG | + | Chr2:7473006-7473025 | MsG0280006875.01.T01:CDS | 45.0% |
| CGATGAACAGACAATGGGTG+TGG | + | Chr2:7473068-7473087 | MsG0280006875.01.T01:intron | 50.0% | |
| TCAGTCGTAGCTGCTGTAGA+AGG | + | Chr2:7472985-7473004 | MsG0280006875.01.T01:CDS | 50.0% | |
| TGAACAGACAATGGGTGTGG+TGG | + | Chr2:7473071-7473090 | MsG0280006875.01.T01:intron | 50.0% | |
| TTGAGGGAAAGTGGTGAACC+AGG | + | Chr2:7473482-7473501 | MsG0280006875.01.T01:CDS | 50.0% | |
| ! | TGGGTGTGGTGGAGGTAATA+TGG | + | Chr2:7473082-7473101 | MsG0280006875.01.T01:intron | 50.0% |
| ACAGACAATGGGTGTGGTGG+AGG | + | Chr2:7473074-7473093 | MsG0280006875.01.T01:intron | 55.0% | |
| AGGGAAAGTGGTGAACCAGG+AGG | + | Chr2:7473485-7473504 | MsG0280006875.01.T01:CDS | 55.0% | |
| GCAATGCCACATTGACCTCC+TGG | - | Chr2:7473503-7473522 | None:intergenic | 55.0% | |
| GGTGAACCAGGAGGTCAATG+TGG | + | Chr2:7473494-7473513 | MsG0280006875.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 7472970 | 7473550 | 7472970 | ID=MsG0280006875.01;Name=MsG0280006875.01 |
| Chr2 | mRNA | 7472970 | 7473550 | 7472970 | ID=MsG0280006875.01.T01;Parent=MsG0280006875.01;Name=MsG0280006875.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|0.5|2|0|142 |
| Chr2 | exon | 7472970 | 7473084 | 7472970 | ID=MsG0280006875.01.T01:exon:7883;Parent=MsG0280006875.01.T01 |
| Chr2 | exon | 7473237 | 7473550 | 7473237 | ID=MsG0280006875.01.T01:exon:7884;Parent=MsG0280006875.01.T01 |
| Chr2 | CDS | 7472970 | 7473084 | 7472970 | ID=MsG0280006875.01.T01:cds;Parent=MsG0280006875.01.T01 |
| Chr2 | CDS | 7473237 | 7473550 | 7473237 | ID=MsG0280006875.01.T01:cds;Parent=MsG0280006875.01.T01 |
| Gene Sequence |
| Protein sequence |
