Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035620.01.T01 | XP_013453052.1 | 84.753 | 446 | 22 | 3 | 1 | 401 | 182 | 626 | 0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035620.01.T01 | Q9LHF5 | 38.839 | 448 | 206 | 11 | 1 | 409 | 183 | 601 | 1.63E-86 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035620.01.T01 | A0A072UMI5 | 84.753 | 446 | 22 | 3 | 1 | 401 | 182 | 626 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001315.01 | MsG0680035620.01 | 0.808045 | 3.754967e-50 | 2.124870e-47 |
| MsG0180002796.01 | MsG0680035620.01 | 0.800426 | 1.449034e-48 | 6.745320e-46 |
| MsG0280010976.01 | MsG0680035620.01 | 0.805328 | 1.407480e-49 | 7.425346e-47 |
| MsG0680031699.01 | MsG0680035620.01 | 0.809229 | 2.098126e-50 | 1.225060e-47 |
| MsG0680034235.01 | MsG0680035620.01 | 0.830962 | 2.185286e-55 | 2.338185e-52 |
| MsG0680035620.01 | MsG0780036430.01 | 0.801075 | 1.068433e-48 | 5.056150e-46 |
| MsG0480022672.01 | MsG0680035620.01 | 0.807181 | 5.730280e-50 | 3.170416e-47 |
| MsG0580029231.01 | MsG0680035620.01 | 0.836281 | 1.026081e-56 | 1.287183e-53 |
| MsG0280008363.01 | MsG0680035620.01 | 0.807821 | 4.191943e-50 | 2.358179e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035620.01.T01 | MTR_6g085190 | 84.753 | 446 | 22 | 3 | 1 | 401 | 182 | 626 | 0.0 | 753 |
| MsG0680035620.01.T01 | MTR_4g127880 | 59.259 | 81 | 32 | 1 | 324 | 404 | 438 | 517 | 8.89e-24 | 103 |
| MsG0680035620.01.T01 | MTR_4g127880 | 37.838 | 148 | 86 | 2 | 1 | 143 | 73 | 219 | 3.21e-20 | 93.2 |
| MsG0680035620.01.T01 | MTR_4g127880 | 59.259 | 81 | 32 | 1 | 324 | 404 | 641 | 720 | 1.12e-23 | 103 |
| MsG0680035620.01.T01 | MTR_4g127880 | 37.838 | 148 | 86 | 2 | 1 | 143 | 276 | 422 | 5.38e-20 | 92.8 |
| MsG0680035620.01.T01 | MTR_4g127880 | 59.259 | 81 | 32 | 1 | 324 | 404 | 621 | 700 | 1.24e-23 | 103 |
| MsG0680035620.01.T01 | MTR_4g127880 | 37.838 | 148 | 86 | 2 | 1 | 143 | 256 | 402 | 6.50e-20 | 92.8 |
| MsG0680035620.01.T01 | MTR_5g066440 | 57.143 | 70 | 30 | 0 | 328 | 397 | 513 | 582 | 6.23e-21 | 95.5 |
| MsG0680035620.01.T01 | MTR_5g066440 | 34.615 | 156 | 100 | 2 | 1 | 156 | 269 | 422 | 2.52e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035620.01.T01 | AT3G24440 | 39.150 | 447 | 204 | 11 | 1 | 409 | 183 | 599 | 3.75e-88 | 279 |
| MsG0680035620.01.T01 | AT3G24440 | 38.839 | 448 | 206 | 11 | 1 | 409 | 183 | 601 | 1.66e-87 | 278 |
| MsG0680035620.01.T01 | AT4G30200 | 56.627 | 83 | 34 | 1 | 319 | 401 | 600 | 680 | 1.15e-22 | 100 |
| MsG0680035620.01.T01 | AT4G30200 | 32.370 | 173 | 107 | 2 | 1 | 163 | 278 | 450 | 3.88e-19 | 90.5 |
| MsG0680035620.01.T01 | AT4G30200 | 56.627 | 83 | 34 | 1 | 319 | 401 | 612 | 692 | 1.16e-22 | 100 |
| MsG0680035620.01.T01 | AT4G30200 | 30.270 | 185 | 107 | 2 | 1 | 163 | 278 | 462 | 1.15e-18 | 89.0 |
| MsG0680035620.01.T01 | AT4G30200 | 56.627 | 83 | 34 | 1 | 319 | 401 | 583 | 663 | 1.36e-22 | 100 |
| MsG0680035620.01.T01 | AT4G30200 | 32.370 | 173 | 107 | 2 | 1 | 163 | 261 | 433 | 4.21e-19 | 90.1 |
| MsG0680035620.01.T01 | AT2G18870 | 51.648 | 91 | 41 | 1 | 313 | 400 | 123 | 213 | 4.19e-19 | 86.3 |
| MsG0680035620.01.T01 | AT4G30200 | 30.270 | 185 | 107 | 2 | 1 | 163 | 278 | 462 | 1.07e-18 | 89.0 |
| MsG0680035620.01.T01 | AT5G57380 | 47.727 | 88 | 46 | 0 | 328 | 415 | 510 | 597 | 5.35e-18 | 86.7 |
| MsG0680035620.01.T01 | AT5G57380 | 34.161 | 161 | 99 | 4 | 1 | 159 | 232 | 387 | 9.41e-17 | 82.8 |
| MsG0680035620.01.T01 | AT5G57380 | 47.727 | 88 | 46 | 0 | 328 | 415 | 530 | 617 | 5.55e-18 | 86.7 |
| MsG0680035620.01.T01 | AT5G57380 | 34.161 | 161 | 99 | 4 | 1 | 159 | 252 | 407 | 9.84e-17 | 82.8 |
| MsG0680035620.01.T01 | AT2G18880 | 51.351 | 74 | 36 | 0 | 331 | 404 | 440 | 513 | 5.74e-18 | 86.3 |
Find 114 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTCCAACCTTTGGATTC+TGG | 0.204447 | 6:+109465178 | None:intergenic |
| AAAATCCTCCTCTGATCTTT+TGG | 0.225978 | 6:+109464584 | None:intergenic |
| CGTAACTTCTGAGGACATTA+AGG | 0.258985 | 6:-109464672 | MsG0680035620.01.T01:CDS |
| CACCAAAAGCGTTGAGATAT+TGG | 0.279016 | 6:-109464468 | MsG0680035620.01.T01:CDS |
| TACCAATATCTCAACGCTTT+TGG | 0.280459 | 6:+109464466 | None:intergenic |
| TAAAGGAGAACCGTTTATTA+AGG | 0.300683 | 6:+109463877 | None:intergenic |
| ATCCATTTCTTGCCTCTTGT+TGG | 0.307420 | 6:+109463616 | None:intergenic |
| TTCGTTTGGTCTCCAGGTTT+CGG | 0.314155 | 6:+109463991 | None:intergenic |
| AACTTCTTCGTTTGGTCTCC+AGG | 0.330854 | 6:+109463985 | None:intergenic |
| ACAAGAGGCAAAGGCTAAAC+TGG | 0.339079 | 6:-109465344 | MsG0680035620.01.T01:CDS |
| CTCTTCAAACACAAACTTGC+AGG | 0.354732 | 6:+109464739 | None:intergenic |
| AATTGACATGAATGCTAAAC+AGG | 0.369248 | 6:-109464426 | MsG0680035620.01.T01:CDS |
| AATTCGTTGGCTAGAATGTC+AGG | 0.388611 | 6:-109463798 | MsG0680035620.01.T01:CDS |
| CAAGAACAAGGCTGCCTTGA+GGG | 0.391006 | 6:-109464284 | MsG0680035620.01.T01:CDS |
| CAGTGAACCGGGCTCCAAAC+TGG | 0.396392 | 6:-109464381 | MsG0680035620.01.T01:CDS |
| TGTGGGATCGATCTCCAGTT+TGG | 0.407580 | 6:+109464367 | None:intergenic |
| ACAGCAGGAACTTCTTCGTT+TGG | 0.411595 | 6:+109463977 | None:intergenic |
| GATCGATGATCCGAGTAGTT+TGG | 0.412460 | 6:-109463675 | MsG0680035620.01.T01:CDS |
| AACTGGAGGAGGCAGTGAAC+CGG | 0.415572 | 6:-109464393 | MsG0680035620.01.T01:CDS |
| TGCTTACATGGTTTAGTTTG+AGG | 0.422999 | 6:-109463745 | MsG0680035620.01.T01:CDS |
| GTAACTTCTGAGGACATTAA+GGG | 0.426701 | 6:-109464671 | MsG0680035620.01.T01:CDS |
| ATCCAACAAGAGGCAAGAAA+TGG | 0.427831 | 6:-109463618 | MsG0680035620.01.T01:CDS |
| AAACAGGATGATACTGAAAC+TGG | 0.428677 | 6:-109464410 | MsG0680035620.01.T01:CDS |
| GCTTACATGGTTTAGTTTGA+GGG | 0.431261 | 6:-109463744 | MsG0680035620.01.T01:CDS |
| TTCTGCACATCACTGGCAAT+AGG | 0.433169 | 6:+109465256 | None:intergenic |
| AAATGCACCGATCGCTCTTC+CGG | 0.433270 | 6:+109464201 | None:intergenic |
| AAGGTCTCGAACCTTGAATC+CGG | 0.441293 | 6:+109464334 | None:intergenic |
| TTGGAAGAACCACCGTCAAC+AGG | 0.444884 | 6:+109465307 | None:intergenic |
| TGTGACAGCACCTTAATAAA+CGG | 0.450247 | 6:-109463887 | MsG0680035620.01.T01:CDS |
| GTTGTGGCATTAAATTAAGA+AGG | 0.452190 | 6:-109463583 | MsG0680035620.01.T01:CDS |
| ACATTAAGGGATTCAAACTA+TGG | 0.453105 | 6:-109464658 | MsG0680035620.01.T01:CDS |
| TCTGCACATCACTGGCAATA+GGG | 0.453195 | 6:+109465257 | None:intergenic |
| GACAATGCCACGTACCATCT+TGG | 0.453446 | 6:+109465288 | None:intergenic |
| ATTGTATCTTATACAGATGT+TGG | 0.454036 | 6:-109464521 | MsG0680035620.01.T01:CDS |
| AAGAATATTCTGTGCAAGGC+TGG | 0.454526 | 6:+109464549 | None:intergenic |
| GGATTCAAGGTTCGAGACCT+TGG | 0.456764 | 6:-109464332 | MsG0680035620.01.T01:CDS |
| CGCTACCATGTGGTCTTGCT+AGG | 0.457631 | 6:+109464020 | None:intergenic |
| ATGTCCTCAGAAGTTACGTT+TGG | 0.462457 | 6:+109464677 | None:intergenic |
| TTAGGCTGAAATTGCTTACA+TGG | 0.463255 | 6:-109463757 | MsG0680035620.01.T01:CDS |
| GGCAAAGGCTAAACTGGAAA+AGG | 0.469157 | 6:-109465338 | MsG0680035620.01.T01:CDS |
| GTCATATGAAGAAAGAGTTT+AGG | 0.474263 | 6:-109463775 | MsG0680035620.01.T01:CDS |
| GTAGCGGTGGTTCCGAAACC+TGG | 0.474866 | 6:-109464003 | MsG0680035620.01.T01:CDS |
| AATGACTTACCCCGGATTCA+AGG | 0.475344 | 6:-109464345 | MsG0680035620.01.T01:CDS |
| TCGATCTCCAGTTTGGAGCC+CGG | 0.491441 | 6:+109464374 | None:intergenic |
| AACGATCAAGCCTAGCCATC+CGG | 0.494565 | 6:-109464220 | MsG0680035620.01.T01:CDS |
| TGGTACGTGGCATTGTCAGC+AGG | 0.498805 | 6:-109465282 | MsG0680035620.01.T01:CDS |
| AACACAAACTTGCAGGCAGC+AGG | 0.502593 | 6:+109464746 | None:intergenic |
| GATCGCTCTTCCGGATGGCT+AGG | 0.507299 | 6:+109464210 | None:intergenic |
| GAACCATCGGGTGCATGTAA+AGG | 0.509944 | 6:+109463860 | None:intergenic |
| AGGTCTCGAACCTTGAATCC+GGG | 0.512295 | 6:+109464335 | None:intergenic |
| AAGGAAGTTGGTCCTGTTGA+CGG | 0.515182 | 6:-109465319 | MsG0680035620.01.T01:CDS |
| ACTATGGTATTACAAGACTA+GGG | 0.525868 | 6:-109464642 | MsG0680035620.01.T01:CDS |
| CATCAGCTTTCTCAATAGCA+AGG | 0.536745 | 6:+109465224 | None:intergenic |
| ACAGAGTTTCTGCACATCAC+TGG | 0.537538 | 6:+109465249 | None:intergenic |
| CGAAAAGAATATTCTGTGCA+AGG | 0.542417 | 6:+109464545 | None:intergenic |
| CTGATATTATATCCAACAAG+AGG | 0.542974 | 6:-109463628 | MsG0680035620.01.T01:CDS |
| CTATTGAGAAAGCTGATGAA+TGG | 0.543260 | 6:-109465219 | MsG0680035620.01.T01:CDS |
| TATACAGATGTTGGCGACCA+TGG | 0.544516 | 6:-109464512 | MsG0680035620.01.T01:CDS |
| ATTGTGTTAAAGTAATTCGT+TGG | 0.547857 | 6:-109463811 | MsG0680035620.01.T01:CDS |
| CTTGCTTGGGCTCAAGAACA+AGG | 0.549129 | 6:-109464296 | MsG0680035620.01.T01:CDS |
| GCTAAACTGGAAAAGGAAGT+TGG | 0.550877 | 6:-109465331 | MsG0680035620.01.T01:CDS |
| AATCCGGGGTAAGTCATTGT+GGG | 0.553208 | 6:+109464350 | None:intergenic |
| ATGGTTTAGTTTGAGGGCAA+CGG | 0.555090 | 6:-109463738 | MsG0680035620.01.T01:CDS |
| CTGCAAGTTTGTGTTTGAAG+AGG | 0.555223 | 6:-109464738 | MsG0680035620.01.T01:CDS |
| AACTATGGTATTACAAGACT+AGG | 0.555562 | 6:-109464643 | MsG0680035620.01.T01:CDS |
| ACTGGAGGAGGCAGTGAACC+GGG | 0.555883 | 6:-109464392 | MsG0680035620.01.T01:CDS |
| TCTAAGGAGAACGAACCATC+GGG | 0.556189 | 6:+109463848 | None:intergenic |
| GGATTCTGGATTGTCATCAG+TGG | 0.556540 | 6:+109465192 | None:intergenic |
| GATGATCCGAGTAGTTTGGC+AGG | 0.560501 | 6:-109463671 | MsG0680035620.01.T01:CDS |
| CTTGTTCTTGAGCCCAAGCA+AGG | 0.563534 | 6:+109464297 | None:intergenic |
| AGTTGACCTGCCAAACTACT+CGG | 0.568871 | 6:+109463665 | None:intergenic |
| GAATCCGGGGTAAGTCATTG+TGG | 0.569331 | 6:+109464349 | None:intergenic |
| ATCTAAGGAGAACGAACCAT+CGG | 0.570599 | 6:+109463847 | None:intergenic |
| ATCAGCTTTCTCAATAGCAA+GGG | 0.571702 | 6:+109465225 | None:intergenic |
| AAGAACAAGGCTGCCTTGAG+GGG | 0.571814 | 6:-109464283 | MsG0680035620.01.T01:CDS |
| ATGGATTCAATAACAAGTTG+TGG | 0.573839 | 6:-109463599 | MsG0680035620.01.T01:CDS |
| TAGCCATCCGGAAGAGCGAT+CGG | 0.577859 | 6:-109464208 | MsG0680035620.01.T01:intron |
| GGCAACGGAACAAGAGCGTA+GGG | 0.584349 | 6:-109463723 | MsG0680035620.01.T01:CDS |
| GTGTGTTTCCAAAAGATCAG+AGG | 0.586881 | 6:-109464592 | MsG0680035620.01.T01:CDS |
| TGACATGGTACAAGAGGCAA+AGG | 0.592745 | 6:-109465353 | None:intergenic |
| CGGCACGGCAAAACCCCTCA+AGG | 0.593163 | 6:+109464270 | None:intergenic |
| TGACGGTGGTTCTTCCAAGA+TGG | 0.594589 | 6:-109465302 | MsG0680035620.01.T01:CDS |
| GTTGACTCCCGCATAGTCGT+AGG | 0.596566 | 6:-109463956 | MsG0680035620.01.T01:CDS |
| TCTCCTTTACATGCACCCGA+TGG | 0.598572 | 6:-109463863 | MsG0680035620.01.T01:CDS |
| TTCATGTCAATTGATGAAGT+CGG | 0.599447 | 6:+109464437 | None:intergenic |
| TTGTGGCATTAAATTAAGAA+GGG | 0.602341 | 6:-109463582 | MsG0680035620.01.T01:CDS |
| TGAGAAAGCTGATGAATGGT+TGG | 0.603762 | 6:-109465215 | MsG0680035620.01.T01:CDS |
| ATTGCATGACATGGTACAAG+AGG | 0.605023 | 6:-109465359 | None:intergenic |
| GCACCGATCGCTCTTCCGGA+TGG | 0.607338 | 6:+109464205 | None:intergenic |
| CAAGGTGCAAAATCTTTCCA+AGG | 0.610341 | 6:+109464315 | None:intergenic |
| GGGCAACGGAACAAGAGCGT+AGG | 0.614096 | 6:-109463724 | MsG0680035620.01.T01:CDS |
| TGTTTCCAAAAGATCAGAGG+AGG | 0.617266 | 6:-109464589 | MsG0680035620.01.T01:CDS |
| AATGCCAAACGTAACTTCTG+AGG | 0.620213 | 6:-109464681 | MsG0680035620.01.T01:CDS |
| ACTATGCGGGAGTCAACAGC+AGG | 0.624903 | 6:+109463962 | None:intergenic |
| ACTTGCACCTACGACTATGC+GGG | 0.634727 | 6:+109463949 | None:intergenic |
| CTAGCAAGACCACATGGTAG+CGG | 0.635274 | 6:-109464019 | MsG0680035620.01.T01:CDS |
| GCATAGTCGTAGGTGCAAGT+AGG | 0.636726 | 6:-109463946 | MsG0680035620.01.T01:CDS |
| TCAAGAACAAGGCTGCCTTG+AGG | 0.643311 | 6:-109464285 | MsG0680035620.01.T01:CDS |
| AATATTCTGTGCAAGGCTGG+AGG | 0.643828 | 6:+109464552 | None:intergenic |
| GGTCTCGAACCTTGAATCCG+GGG | 0.645521 | 6:+109464336 | None:intergenic |
| GATGATACTGAAACTGGAGG+AGG | 0.647232 | 6:-109464404 | MsG0680035620.01.T01:CDS |
| GCAAGACCACATGGTAGCGG+TGG | 0.655229 | 6:-109464016 | MsG0680035620.01.T01:CDS |
| GATGACAATCCAGAATCCAA+AGG | 0.656967 | 6:-109465187 | MsG0680035620.01.T01:intron |
| GAAGTTGGTCCTGTTGACGG+TGG | 0.657973 | 6:-109465316 | MsG0680035620.01.T01:CDS |
| TGGCGACCATGGTCATTCTG+AGG | 0.659046 | 6:-109464501 | MsG0680035620.01.T01:CDS |
| GGTTCTTCCAAGATGGTACG+TGG | 0.663592 | 6:-109465295 | MsG0680035620.01.T01:CDS |
| TACTTGCACCTACGACTATG+CGG | 0.668138 | 6:+109463948 | None:intergenic |
| CAGGATGATACTGAAACTGG+AGG | 0.670490 | 6:-109464407 | MsG0680035620.01.T01:CDS |
| GATCCCACAATGACTTACCC+CGG | 0.670801 | 6:-109464353 | MsG0680035620.01.T01:CDS |
| ATTCGTTGGCTAGAATGTCA+GGG | 0.682204 | 6:-109463797 | MsG0680035620.01.T01:CDS |
| TCGGAACCACCGCTACCATG+TGG | 0.691197 | 6:+109464010 | None:intergenic |
| CTATGGTATTACAAGACTAG+GGG | 0.692533 | 6:-109464641 | MsG0680035620.01.T01:CDS |
| ACTTAGCCTCAGAATGACCA+TGG | 0.702405 | 6:+109464495 | None:intergenic |
| AACGGAACAAGAGCGTAGGG+TGG | 0.711248 | 6:-109463720 | MsG0680035620.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATCATCTGTAAAAAA+AGG | + | Chr6:109463965-109463984 | None:intergenic | 15.0% |
| !!! | AAAAAATGTGATTTTCACTA+CGG | - | Chr6:109463985-109464004 | MsG0680035620.01.T01:CDS | 20.0% |
| !!! | ATTGTTTTACTAACCATTAA+AGG | - | Chr6:109463805-109463824 | MsG0680035620.01.T01:CDS | 20.0% |
| !!! | GAGTTCTAAATTTGATTTAT+CGG | - | Chr6:109464111-109464130 | MsG0680035620.01.T01:intron | 20.0% |
| !!! | TTGTTTTACTAACCATTAAA+GGG | - | Chr6:109463806-109463825 | MsG0680035620.01.T01:CDS | 20.0% |
| ! | AGAAAAAAGCTATAACAAAC+AGG | + | Chr6:109463832-109463851 | None:intergenic | 25.0% |
| ! | ATTGTATCTTATACAGATGT+TGG | - | Chr6:109464405-109464424 | MsG0680035620.01.T01:CDS | 25.0% |
| ! | ATTGTGTTAAAGTAATTCGT+TGG | - | Chr6:109465115-109465134 | MsG0680035620.01.T01:intron | 25.0% |
| ! | TTGTGGCATTAAATTAAGAA+GGG | - | Chr6:109465344-109465363 | MsG0680035620.01.T01:CDS | 25.0% |
| !! | ATACTCAAAGTTTTCATCTA+AGG | + | Chr6:109465097-109465116 | None:intergenic | 25.0% |
| AACTATGGTATTACAAGACT+AGG | - | Chr6:109464283-109464302 | MsG0680035620.01.T01:CDS | 30.0% | |
| AATTGACATGAATGCTAAAC+AGG | - | Chr6:109464500-109464519 | MsG0680035620.01.T01:CDS | 30.0% | |
| ACATTAAGGGATTCAAACTA+TGG | - | Chr6:109464268-109464287 | MsG0680035620.01.T01:CDS | 30.0% | |
| ACTATGGTATTACAAGACTA+GGG | - | Chr6:109464284-109464303 | MsG0680035620.01.T01:CDS | 30.0% | |
| ATGGATTCAATAACAAGTTG+TGG | - | Chr6:109465327-109465346 | MsG0680035620.01.T01:CDS | 30.0% | |
| CTGATATTATATCCAACAAG+AGG | - | Chr6:109465298-109465317 | MsG0680035620.01.T01:CDS | 30.0% | |
| GTCATATGAAGAAAGAGTTT+AGG | - | Chr6:109465151-109465170 | MsG0680035620.01.T01:intron | 30.0% | |
| GTTGTGGCATTAAATTAAGA+AGG | - | Chr6:109465343-109465362 | MsG0680035620.01.T01:CDS | 30.0% | |
| TAAAGGAGAACCGTTTATTA+AGG | + | Chr6:109465052-109465071 | None:intergenic | 30.0% | |
| TTCATGTCAATTGATGAAGT+CGG | + | Chr6:109464492-109464511 | None:intergenic | 30.0% | |
| ! | CTTGCACAGAATATTCTTTT+CGG | - | Chr6:109464382-109464401 | MsG0680035620.01.T01:CDS | 30.0% |
| ! | GTTTTTCTCTAAATCATGAG+AGG | + | Chr6:109464887-109464906 | None:intergenic | 30.0% |
| ! | TTAACATGATAAGCTCCTTT+TGG | - | Chr6:109464139-109464158 | MsG0680035620.01.T01:intron | 30.0% |
| AAACAGGATGATACTGAAAC+TGG | - | Chr6:109464516-109464535 | MsG0680035620.01.T01:CDS | 35.0% | |
| AGAGAAATAGTTCCAACCTT+TGG | + | Chr6:109463758-109463777 | None:intergenic | 35.0% | |
| ATAACAAACAGGCCCTTTAA+TGG | + | Chr6:109463821-109463840 | None:intergenic | 35.0% | |
| ATCAGCTTTCTCAATAGCAA+GGG | + | Chr6:109463704-109463723 | None:intergenic | 35.0% | |
| CAGAAACAACATTCAGATCA+AGG | + | Chr6:109464763-109464782 | None:intergenic | 35.0% | |
| CGAAAAGAATATTCTGTGCA+AGG | + | Chr6:109464384-109464403 | None:intergenic | 35.0% | |
| CTATGGTATTACAAGACTAG+GGG | - | Chr6:109464285-109464304 | MsG0680035620.01.T01:CDS | 35.0% | |
| CTATTGAGAAAGCTGATGAA+TGG | - | Chr6:109463707-109463726 | MsG0680035620.01.T01:CDS | 35.0% | |
| TAACACACACACATCAGAAA+AGG | + | Chr6:109463781-109463800 | None:intergenic | 35.0% | |
| TGTGACAGCACCTTAATAAA+CGG | - | Chr6:109465039-109465058 | MsG0680035620.01.T01:intron | 35.0% | |
| TTAGGCTGAAATTGCTTACA+TGG | - | Chr6:109465169-109465188 | MsG0680035620.01.T01:intron | 35.0% | |
| ! | AAAATCCTCCTCTGATCTTT+TGG | + | Chr6:109464345-109464364 | None:intergenic | 35.0% |
| ! | AAAGATTTTGCACCTTGCTT+GGG | - | Chr6:109464617-109464636 | MsG0680035620.01.T01:CDS | 35.0% |
| ! | AACTGCTTTGCATTTGAAAC+AGG | + | Chr6:109463920-109463939 | None:intergenic | 35.0% |
| ! | GTAACTTCTGAGGACATTAA+GGG | - | Chr6:109464255-109464274 | MsG0680035620.01.T01:CDS | 35.0% |
| ! | TACCAATATCTCAACGCTTT+TGG | + | Chr6:109464463-109464482 | None:intergenic | 35.0% |
| !! | GCTTACATGGTTTAGTTTGA+GGG | - | Chr6:109465182-109465201 | MsG0680035620.01.T01:intron | 35.0% |
| !! | TCTTTTGGAAACACACAAAC+AGG | + | Chr6:109464330-109464349 | None:intergenic | 35.0% |
| !! | TGCTTACATGGTTTAGTTTG+AGG | - | Chr6:109465181-109465200 | MsG0680035620.01.T01:intron | 35.0% |
| !!! | GACCACAGCATTTTTTGTAT+CGG | + | Chr6:109464679-109464698 | None:intergenic | 35.0% |
| AAAAACCTAGCAAGACCACA+TGG | - | Chr6:109464901-109464920 | MsG0680035620.01.T01:intron | 40.0% | |
| AAGAATATTCTGTGCAAGGC+TGG | + | Chr6:109464380-109464399 | None:intergenic | 40.0% | |
| AATGCCAAACGTAACTTCTG+AGG | - | Chr6:109464245-109464264 | MsG0680035620.01.T01:CDS | 40.0% | |
| ACAATCCAGAATCCAAAGGT+TGG | - | Chr6:109463743-109463762 | MsG0680035620.01.T01:CDS | 40.0% | |
| ATCCAACAAGAGGCAAGAAA+TGG | - | Chr6:109465308-109465327 | MsG0680035620.01.T01:CDS | 40.0% | |
| ATCCATTTCTTGCCTCTTGT+TGG | + | Chr6:109465313-109465332 | None:intergenic | 40.0% | |
| ATCTAAGGAGAACGAACCAT+CGG | + | Chr6:109465082-109465101 | None:intergenic | 40.0% | |
| ATGTCCTCAGAAGTTACGTT+TGG | + | Chr6:109464252-109464271 | None:intergenic | 40.0% | |
| CAAGGTGCAAAATCTTTCCA+AGG | + | Chr6:109464614-109464633 | None:intergenic | 40.0% | |
| CATCAGCTTTCTCAATAGCA+AGG | + | Chr6:109463705-109463724 | None:intergenic | 40.0% | |
| CTCTTCAAACACAAACTTGC+AGG | + | Chr6:109464190-109464209 | None:intergenic | 40.0% | |
| CTGCAAGTTTGTGTTTGAAG+AGG | - | Chr6:109464188-109464207 | MsG0680035620.01.T01:intron | 40.0% | |
| GATGACAATCCAGAATCCAA+AGG | - | Chr6:109463739-109463758 | MsG0680035620.01.T01:CDS | 40.0% | |
| GCTAAACTGGAAAAGGAAGT+TGG | - | Chr6:109463595-109463614 | MsG0680035620.01.T01:CDS | 40.0% | |
| GTGTGTTTCCAAAAGATCAG+AGG | - | Chr6:109464334-109464353 | MsG0680035620.01.T01:CDS | 40.0% | |
| TAGTTCCAACCTTTGGATTC+TGG | + | Chr6:109463751-109463770 | None:intergenic | 40.0% | |
| TGAGAAAGCTGATGAATGGT+TGG | - | Chr6:109463711-109463730 | MsG0680035620.01.T01:CDS | 40.0% | |
| TGCCGATACAAAAAATGCTG+TGG | - | Chr6:109464674-109464693 | MsG0680035620.01.T01:CDS | 40.0% | |
| TGTTTCCAAAAGATCAGAGG+AGG | - | Chr6:109464337-109464356 | MsG0680035620.01.T01:CDS | 40.0% | |
| ! | AATTCGTTGGCTAGAATGTC+AGG | - | Chr6:109465128-109465147 | MsG0680035620.01.T01:intron | 40.0% |
| ! | ATTCGTTGGCTAGAATGTCA+GGG | - | Chr6:109465129-109465148 | MsG0680035620.01.T01:intron | 40.0% |
| ! | CGTAACTTCTGAGGACATTA+AGG | - | Chr6:109464254-109464273 | MsG0680035620.01.T01:CDS | 40.0% |
| ! | GAAAGATTTTGCACCTTGCT+TGG | - | Chr6:109464616-109464635 | MsG0680035620.01.T01:CDS | 40.0% |
| !! | ATGGTTTAGTTTGAGGGCAA+CGG | - | Chr6:109465188-109465207 | MsG0680035620.01.T01:CDS | 40.0% |
| !! | CACCAAAAGCGTTGAGATAT+TGG | - | Chr6:109464458-109464477 | MsG0680035620.01.T01:CDS | 40.0% |
| !!! | CAGCATTTTTTGTATCGGCA+CGG | + | Chr6:109464674-109464693 | None:intergenic | 40.0% |
| AACTTCTTCGTTTGGTCTCC+AGG | + | Chr6:109464944-109464963 | None:intergenic | 45.0% | |
| AAGGTCTCGAACCTTGAATC+CGG | + | Chr6:109464595-109464614 | None:intergenic | 45.0% | |
| AATATTCTGTGCAAGGCTGG+AGG | + | Chr6:109464377-109464396 | None:intergenic | 45.0% | |
| AATCCGGGGTAAGTCATTGT+GGG | + | Chr6:109464579-109464598 | None:intergenic | 45.0% | |
| AATGACTTACCCCGGATTCA+AGG | - | Chr6:109464581-109464600 | MsG0680035620.01.T01:CDS | 45.0% | |
| ACAAGAGGCAAAGGCTAAAC+TGG | - | Chr6:109463582-109463601 | MsG0680035620.01.T01:CDS | 45.0% | |
| ACAGAGTTTCTGCACATCAC+TGG | + | Chr6:109463680-109463699 | None:intergenic | 45.0% | |
| ACAGCAGGAACTTCTTCGTT+TGG | + | Chr6:109464952-109464971 | None:intergenic | 45.0% | |
| ACTTAGCCTCAGAATGACCA+TGG | + | Chr6:109464434-109464453 | None:intergenic | 45.0% | |
| AGTTGACCTGCCAAACTACT+CGG | + | Chr6:109465264-109465283 | None:intergenic | 45.0% | |
| CAGGATGATACTGAAACTGG+AGG | - | Chr6:109464519-109464538 | MsG0680035620.01.T01:CDS | 45.0% | |
| GATCGATGATCCGAGTAGTT+TGG | - | Chr6:109465251-109465270 | MsG0680035620.01.T01:CDS | 45.0% | |
| GATGATACTGAAACTGGAGG+AGG | - | Chr6:109464522-109464541 | MsG0680035620.01.T01:CDS | 45.0% | |
| GGATTCTGGATTGTCATCAG+TGG | + | Chr6:109463737-109463756 | None:intergenic | 45.0% | |
| GGCAAAGGCTAAACTGGAAA+AGG | - | Chr6:109463588-109463607 | MsG0680035620.01.T01:CDS | 45.0% | |
| GTGAGTTCTTCGTTCAAGTC+AGG | + | Chr6:109464788-109464807 | None:intergenic | 45.0% | |
| TACTTGCACCTACGACTATG+CGG | + | Chr6:109464981-109465000 | None:intergenic | 45.0% | |
| TATACAGATGTTGGCGACCA+TGG | - | Chr6:109464414-109464433 | MsG0680035620.01.T01:CDS | 45.0% | |
| TCATCCCGAGAAGACTCAAA+AGG | + | Chr6:109464815-109464834 | None:intergenic | 45.0% | |
| TCTAAGGAGAACGAACCATC+GGG | + | Chr6:109465081-109465100 | None:intergenic | 45.0% | |
| TCTGCACATCACTGGCAATA+GGG | + | Chr6:109463672-109463691 | None:intergenic | 45.0% | |
| TCTTCTCGGGATGAAGACAA+TGG | - | Chr6:109464821-109464840 | MsG0680035620.01.T01:intron | 45.0% | |
| TTCGTTTGGTCTCCAGGTTT+CGG | + | Chr6:109464938-109464957 | None:intergenic | 45.0% | |
| TTCTGCACATCACTGGCAAT+AGG | + | Chr6:109463673-109463692 | None:intergenic | 45.0% | |
| ! | AAGGAAGTTGGTCCTGTTGA+CGG | - | Chr6:109463607-109463626 | MsG0680035620.01.T01:CDS | 45.0% |
| !! | CTCCTCCTTTTGAGTCTTCT+CGG | - | Chr6:109464807-109464826 | MsG0680035620.01.T01:intron | 45.0% |
| !! | TCCTCCTTTTGAGTCTTCTC+GGG | - | Chr6:109464808-109464827 | MsG0680035620.01.T01:intron | 45.0% |
| AACACAAACTTGCAGGCAGC+AGG | + | Chr6:109464183-109464202 | None:intergenic | 50.0% | |
| AACGATCAAGCCTAGCCATC+CGG | - | Chr6:109464706-109464725 | MsG0680035620.01.T01:CDS | 50.0% | |
| AAGAACAAGGCTGCCTTGAG+GGG | - | Chr6:109464643-109464662 | MsG0680035620.01.T01:CDS | 50.0% | |
| ACTTGCACCTACGACTATGC+GGG | + | Chr6:109464980-109464999 | None:intergenic | 50.0% | |
| AGGTCTCGAACCTTGAATCC+GGG | + | Chr6:109464594-109464613 | None:intergenic | 50.0% | |
| CAAGAACAAGGCTGCCTTGA+GGG | - | Chr6:109464642-109464661 | MsG0680035620.01.T01:CDS | 50.0% | |
| CAATGGTTGCACTTTGCAGC+AGG | - | Chr6:109464838-109464857 | MsG0680035620.01.T01:intron | 50.0% | |
| CTAGCAAGACCACATGGTAG+CGG | - | Chr6:109464907-109464926 | MsG0680035620.01.T01:intron | 50.0% | |
| CTTGCTTGGGCTCAAGAACA+AGG | - | Chr6:109464630-109464649 | MsG0680035620.01.T01:CDS | 50.0% | |
| CTTGTTCTTGAGCCCAAGCA+AGG | + | Chr6:109464632-109464651 | None:intergenic | 50.0% | |
| GAACCATCGGGTGCATGTAA+AGG | + | Chr6:109465069-109465088 | None:intergenic | 50.0% | |
| GAATCCGGGGTAAGTCATTG+TGG | + | Chr6:109464580-109464599 | None:intergenic | 50.0% | |
| GACAATGCCACGTACCATCT+TGG | + | Chr6:109463641-109463660 | None:intergenic | 50.0% | |
| GATCCCACAATGACTTACCC+CGG | - | Chr6:109464573-109464592 | MsG0680035620.01.T01:CDS | 50.0% | |
| GATGATCCGAGTAGTTTGGC+AGG | - | Chr6:109465255-109465274 | MsG0680035620.01.T01:CDS | 50.0% | |
| GCATAGTCGTAGGTGCAAGT+AGG | - | Chr6:109464980-109464999 | MsG0680035620.01.T01:intron | 50.0% | |
| GGATTCAAGGTTCGAGACCT+TGG | - | Chr6:109464594-109464613 | MsG0680035620.01.T01:CDS | 50.0% | |
| GGTTCTTCCAAGATGGTACG+TGG | - | Chr6:109463631-109463650 | MsG0680035620.01.T01:CDS | 50.0% | |
| TCAAGAACAAGGCTGCCTTG+AGG | - | Chr6:109464641-109464660 | MsG0680035620.01.T01:CDS | 50.0% | |
| TCCCGAGAAGACTCAAAAGG+AGG | + | Chr6:109464812-109464831 | None:intergenic | 50.0% | |
| TCTCCTTTACATGCACCCGA+TGG | - | Chr6:109465063-109465082 | MsG0680035620.01.T01:intron | 50.0% | |
| TGAACCCTCTGTGAGCCAAA+AGG | + | Chr6:109464157-109464176 | None:intergenic | 50.0% | |
| TGACGGTGGTTCTTCCAAGA+TGG | - | Chr6:109463624-109463643 | MsG0680035620.01.T01:CDS | 50.0% | |
| TGTGGGATCGATCTCCAGTT+TGG | + | Chr6:109464562-109464581 | None:intergenic | 50.0% | |
| TTGGAAGAACCACCGTCAAC+AGG | + | Chr6:109463622-109463641 | None:intergenic | 50.0% | |
| ! | AAATGCACCGATCGCTCTTC+CGG | + | Chr6:109464728-109464747 | None:intergenic | 50.0% |
| !!! | AAGCTCCTTTTGGCTCACAG+AGG | - | Chr6:109464149-109464168 | MsG0680035620.01.T01:intron | 50.0% |
| !!! | AGCTCCTTTTGGCTCACAGA+GGG | - | Chr6:109464150-109464169 | MsG0680035620.01.T01:intron | 50.0% |
| AACTGGAGGAGGCAGTGAAC+CGG | - | Chr6:109464533-109464552 | MsG0680035620.01.T01:CDS | 55.0% | |
| ACTATGCGGGAGTCAACAGC+AGG | + | Chr6:109464967-109464986 | None:intergenic | 55.0% | |
| CACTTTGCAGCAGGCTGTTG+AGG | - | Chr6:109464847-109464866 | MsG0680035620.01.T01:intron | 55.0% | |
| GGAAGAGCGATCGGTGCATT+TGG | - | Chr6:109464727-109464746 | MsG0680035620.01.T01:CDS | 55.0% | |
| GGTCTCGAACCTTGAATCCG+GGG | + | Chr6:109464593-109464612 | None:intergenic | 55.0% | |
| TAGCCATCCGGAAGAGCGAT+CGG | - | Chr6:109464718-109464737 | MsG0680035620.01.T01:CDS | 55.0% | |
| TGGCGACCATGGTCATTCTG+AGG | - | Chr6:109464425-109464444 | MsG0680035620.01.T01:CDS | 55.0% | |
| TGGTACGTGGCATTGTCAGC+AGG | - | Chr6:109463644-109463663 | MsG0680035620.01.T01:CDS | 55.0% | |
| ! | AACGGAACAAGAGCGTAGGG+TGG | - | Chr6:109465206-109465225 | MsG0680035620.01.T01:CDS | 55.0% |
| ! | CGCTACCATGTGGTCTTGCT+AGG | + | Chr6:109464909-109464928 | None:intergenic | 55.0% |
| ! | GAAGTTGGTCCTGTTGACGG+TGG | - | Chr6:109463610-109463629 | MsG0680035620.01.T01:CDS | 55.0% |
| ! | GGCAACGGAACAAGAGCGTA+GGG | - | Chr6:109465203-109465222 | MsG0680035620.01.T01:CDS | 55.0% |
| ! | GTTGACTCCCGCATAGTCGT+AGG | - | Chr6:109464970-109464989 | MsG0680035620.01.T01:intron | 55.0% |
| ! | TCGATCTCCAGTTTGGAGCC+CGG | + | Chr6:109464555-109464574 | None:intergenic | 55.0% |
| ACTGGAGGAGGCAGTGAACC+GGG | - | Chr6:109464534-109464553 | MsG0680035620.01.T01:CDS | 60.0% | |
| CAGTGAACCGGGCTCCAAAC+TGG | - | Chr6:109464545-109464564 | MsG0680035620.01.T01:CDS | 60.0% | |
| GATCGCTCTTCCGGATGGCT+AGG | + | Chr6:109464719-109464738 | None:intergenic | 60.0% | |
| GTAGCGGTGGTTCCGAAACC+TGG | - | Chr6:109464923-109464942 | MsG0680035620.01.T01:intron | 60.0% | |
| TCGGAACCACCGCTACCATG+TGG | + | Chr6:109464919-109464938 | None:intergenic | 60.0% | |
| ! | GGGCAACGGAACAAGAGCGT+AGG | - | Chr6:109465202-109465221 | MsG0680035620.01.T01:CDS | 60.0% |
| !! | GCAAGACCACATGGTAGCGG+TGG | - | Chr6:109464910-109464929 | MsG0680035620.01.T01:intron | 60.0% |
| CGGCACGGCAAAACCCCTCA+AGG | + | Chr6:109464659-109464678 | None:intergenic | 65.0% | |
| ! | GCACCGATCGCTCTTCCGGA+TGG | + | Chr6:109464724-109464743 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 109463577 | 109465371 | 109463577 | ID=MsG0680035620.01;Name=MsG0680035620.01 |
| Chr6 | mRNA | 109463577 | 109465371 | 109463577 | ID=MsG0680035620.01.T01;Parent=MsG0680035620.01;Name=MsG0680035620.01.T01;_AED=0.23;_eAED=0.23;_QI=0|0.75|0.6|1|0.5|0.4|5|0|417 |
| Chr6 | exon | 109463577 | 109464075 | 109463577 | ID=MsG0680035620.01.T01:exon:8586;Parent=MsG0680035620.01.T01 |
| Chr6 | exon | 109464209 | 109464779 | 109464209 | ID=MsG0680035620.01.T01:exon:8585;Parent=MsG0680035620.01.T01 |
| Chr6 | exon | 109465188 | 109465371 | 109465188 | ID=MsG0680035620.01.T01:exon:8584;Parent=MsG0680035620.01.T01 |
| Chr6 | CDS | 109465188 | 109465371 | 109465188 | ID=MsG0680035620.01.T01:cds;Parent=MsG0680035620.01.T01 |
| Chr6 | CDS | 109464209 | 109464779 | 109464209 | ID=MsG0680035620.01.T01:cds;Parent=MsG0680035620.01.T01 |
| Chr6 | CDS | 109463577 | 109464075 | 109463577 | ID=MsG0680035620.01.T01:cds;Parent=MsG0680035620.01.T01 |
| Gene Sequence |
| Protein sequence |
