AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036430.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036430.01.T01 MTR_7g018610 52.731 476 112 11 47 410 703 1177 5.77e-115 362
MsG0780036430.01.T01 MTR_7g018610 53.165 474 111 14 47 410 703 1175 2.69e-113 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036430.01.T01 AT1G67230 40.659 91 39 4 65 153 729 806 3.39e-12 68.9

Find 92 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATATCACCAACCAATTT+TGG 0.165400 7:-8040014 None:intergenic
TTTAAGAATTTGAGAGATTT+TGG 0.194777 7:+8041782 MsG0780036430.01.T01:CDS
GGTGCCTTCTCTTCCAAAAT+TGG 0.236620 7:+8040001 MsG0780036430.01.T01:CDS
TTTGGTGTGTTCATAAGTTT+TGG 0.263920 7:+8041800 MsG0780036430.01.T01:CDS
ATGTAAATCTGGATTCTTCT+AGG 0.298411 7:+8040051 MsG0780036430.01.T01:CDS
CTGCTGTCCAGCCTTTGAAT+TGG 0.332990 7:-8040431 None:intergenic
AAATCATTTCTCCACAGTTC+TGG 0.341753 7:-8039926 None:intergenic
CATCAGTGGGTAAGAAGCTT+TGG 0.342815 7:+8042050 MsG0780036430.01.T01:CDS
ATTATCTTCTATTGACAAAC+AGG 0.353003 7:+8040370 MsG0780036430.01.T01:CDS
GGGGACTTTGTATCAGTTGC+AGG 0.356364 7:-8040092 None:intergenic
CTCACTCAAAGCCCTGTTGT+TGG 0.379330 7:-8041894 None:intergenic
GATACAAAGTCCCCTGTTCC+TGG 0.388035 7:+8040101 MsG0780036430.01.T01:CDS
AGAGTCATTTGCTGCTGAAA+TGG 0.394309 7:+8039485 MsG0780036430.01.T01:CDS
GAATCCTCAGCAATTCCATT+TGG 0.394656 7:-8040525 None:intergenic
TTCCTGGTGGAACTGTCTCT+TGG 0.402119 7:+8040117 MsG0780036430.01.T01:CDS
CGAATTTGCGGAAGCGAAAC+CGG 0.410471 7:+8040595 MsG0780036430.01.T01:CDS
CTGTCCAGCCTTTGAATTGG+AGG 0.421135 7:-8040428 None:intergenic
GGGTGGTTCTGATGTAAATC+TGG 0.425959 7:+8040040 MsG0780036430.01.T01:CDS
TCTCTGCTGCTTTCTGAGAC+TGG 0.428190 7:-8041847 None:intergenic
GAGACAGTTCCACCAGGAAC+AGG 0.429518 7:-8040113 None:intergenic
CAAAGCCCTGTTGTTGGTTG+TGG 0.430245 7:-8041888 None:intergenic
TCAAAAGGCTGCTGCTCCTC+CGG 0.431809 7:+8040706 MsG0780036430.01.T01:CDS
CCTTCTCTTCCAAAATTGGT+TGG 0.443220 7:+8040005 MsG0780036430.01.T01:CDS
ATGATACCACAACCAACAAC+AGG 0.444094 7:+8041882 MsG0780036430.01.T01:CDS
TATATCAGAATGTCCTTCAC+TGG 0.448958 7:-8040660 None:intergenic
GCTCCTCCGGCACAAACTGC+TGG 0.453545 7:+8040719 MsG0780036430.01.T01:CDS
GGATATCTTGAAAATCTTAG+AGG 0.457830 7:-8040153 None:intergenic
AAACTACAACAAAACGAAGA+AGG 0.482701 7:+8039381 MsG0780036430.01.T01:CDS
TAAGAAGGAGAAGCAAAAGA+AGG 0.491707 7:+8039406 MsG0780036430.01.T01:CDS
GTACTTGAGATGATTGAATC+CGG 0.497987 7:-8040614 None:intergenic
AGTTTGTGTGCGCTTCACTC+TGG 0.502000 7:-8040478 None:intergenic
ACCCAAAAGGAGGCATCAAA+AGG 0.505458 7:+8040691 MsG0780036430.01.T01:CDS
AGAAGGAGAAGCAGCACAGA+AGG 0.506881 7:+8039423 MsG0780036430.01.T01:CDS
TCAAGTACTGCTAGTGGGCA+TGG 0.507602 7:+8040629 MsG0780036430.01.T01:CDS
AAGATCATGATGCCGAGTAC+AGG 0.509817 7:+8041945 MsG0780036430.01.T01:CDS
CTCTCAAATTCTTAAACTGA+AGG 0.517831 7:-8041775 None:intergenic
CAGCAGAAACCTCGCAGAGG+AGG 0.522746 7:+8040448 MsG0780036430.01.T01:CDS
ACAGCCTCCAATTCAAAGGC+TGG 0.525124 7:+8040424 MsG0780036430.01.T01:CDS
AAAACGAAGAAGGAGTAAGA+AGG 0.526955 7:+8039391 MsG0780036430.01.T01:CDS
TGCTGAGGATTCTGCCAACA+TGG 0.527102 7:+8040536 MsG0780036430.01.T01:CDS
TGCTGACATTGAGAATATAG+AGG 0.528955 7:+8039980 MsG0780036430.01.T01:CDS
AGGACTATTTACAGAGGGAG+TGG 0.531640 7:+8039443 MsG0780036430.01.T01:CDS
ATTTGCTGCTGAAATGGAGT+TGG 0.539983 7:+8039491 MsG0780036430.01.T01:CDS
GAAGAATGTGCTTCAACAGA+AGG 0.541498 7:+8039348 MsG0780036430.01.T01:CDS
GGGAGTGGAAACTCTTAAGC+TGG 0.545393 7:+8039458 MsG0780036430.01.T01:CDS
GATGCTCCAAGGGTACAATC+TGG 0.546323 7:+8040318 MsG0780036430.01.T01:intron
GTTTCACCAGCAGTTTGTGC+CGG 0.547025 7:-8040725 None:intergenic
GAAGGACATTCTGATATACC+AGG 0.554133 7:+8040665 MsG0780036430.01.T01:CDS
GGGACTTTGTATCAGTTGCA+GGG 0.561590 7:-8040091 None:intergenic
AACCTCGCAGAGGAGGGGTA+AGG 0.562019 7:+8040455 MsG0780036430.01.T01:CDS
AGCAGAAACCTCGCAGAGGA+GGG 0.564586 7:+8040449 MsG0780036430.01.T01:CDS
TGTTTGTCAATAGAAGATAA+TGG 0.565641 7:-8040368 None:intergenic
ACGGAATTCACTCCTGTACT+CGG 0.566281 7:-8041957 None:intergenic
CATTGTCGTCGTCGTCAACT+CGG 0.573454 7:-8041994 None:intergenic
CTGATGTTTCACCAGAGTGT+TGG 0.574193 7:-8042033 None:intergenic
CTCGGCCTGCATCTTCTCCA+CGG 0.575321 7:-8041976 None:intergenic
ATTTACAGCCTCCAATTCAA+AGG 0.577261 7:+8040420 MsG0780036430.01.T01:CDS
ATCATCTCAAGTACTGCTAG+TGG 0.579276 7:+8040623 MsG0780036430.01.T01:CDS
GAATTCCGTGGAGAAGATGC+AGG 0.581938 7:+8041971 MsG0780036430.01.T01:CDS
TCACCAGCAGTTTGTGCCGG+AGG 0.585890 7:-8040722 None:intergenic
ATTGGTTGGTGATATTACAC+AGG 0.587007 7:+8040019 MsG0780036430.01.T01:CDS
ATATACCAGGGAGACCCAAA+AGG 0.593016 7:+8040678 MsG0780036430.01.T01:CDS
ATATCAGAATGTCCTTCACT+GGG 0.610474 7:-8040659 None:intergenic
GGACTTTGTATCAGTTGCAG+GGG 0.610592 7:-8040090 None:intergenic
AGACAGTTCCACCAGGAACA+GGG 0.610781 7:-8040112 None:intergenic
GCAGAAACCTCGCAGAGGAG+GGG 0.611342 7:+8040450 MsG0780036430.01.T01:CDS
GGCCTTACCCCTCCTCTGCG+AGG 0.617154 7:-8040457 None:intergenic
TCATCTCAAGTACTGCTAGT+GGG 0.619903 7:+8040624 MsG0780036430.01.T01:CDS
CAACAACAGGGCTTTGAGTG+AGG 0.621846 7:+8041895 MsG0780036430.01.T01:CDS
AGTGAAGCGCACACAAACTG+TGG 0.622976 7:+8040482 MsG0780036430.01.T01:CDS
GATGAAGATTACCAACACTC+TGG 0.625435 7:+8042022 MsG0780036430.01.T01:CDS
CATGGAGATGATCCCAGTGA+AGG 0.628497 7:+8040647 MsG0780036430.01.T01:CDS
AGCCAAGAGACAGTTCCACC+AGG 0.631412 7:-8040119 None:intergenic
GGTGAAACAAGATATAATTG+AGG 0.632289 7:+8040740 MsG0780036430.01.T01:CDS
GACAGTTCCACCAGGAACAG+GGG 0.636095 7:-8040111 None:intergenic
CTTCAAAGTTGCCAGAACTG+TGG 0.641963 7:+8039915 MsG0780036430.01.T01:CDS
ACACTCTGGTGAAACATCAG+TGG 0.642472 7:+8042036 MsG0780036430.01.T01:CDS
ACAGAAGGACTATTTACAGA+GGG 0.645029 7:+8039438 MsG0780036430.01.T01:CDS
CACTCTGGTGAAACATCAGT+GGG 0.651013 7:+8042037 MsG0780036430.01.T01:CDS
TTATCTTCTATTGACAAACA+GGG 0.657792 7:+8040371 MsG0780036430.01.T01:CDS
TACCAGGGAGACCCAAAAGG+AGG 0.660061 7:+8040681 MsG0780036430.01.T01:CDS
ACAAAGTCCCCTGTTCCTGG+TGG 0.660422 7:+8040104 MsG0780036430.01.T01:CDS
CAACAGGGCTTTGAGTGAGG+AGG 0.662596 7:+8041898 MsG0780036430.01.T01:CDS
TTGGTTGGTGATATTACACA+GGG 0.673883 7:+8040020 MsG0780036430.01.T01:CDS
TGATACCACAACCAACAACA+GGG 0.689866 7:+8041883 MsG0780036430.01.T01:CDS
GTTGGTGATATTACACAGGG+TGG 0.690670 7:+8040023 MsG0780036430.01.T01:CDS
AAGGACATTCTGATATACCA+GGG 0.691467 7:+8040666 MsG0780036430.01.T01:CDS
CACAGAAGGACTATTTACAG+AGG 0.697394 7:+8039437 MsG0780036430.01.T01:CDS
GCTTTGAGTGAGGAGGTGAA+CGG 0.702832 7:+8041905 MsG0780036430.01.T01:CDS
GAGTACAGGAGTGAATTCCG+TGG 0.708460 7:+8041959 MsG0780036430.01.T01:CDS
GGACAGCAGAAACCTCGCAG+AGG 0.711606 7:+8040445 MsG0780036430.01.T01:CDS
ATCTGGCAATGATATCACAG+AGG 0.768401 7:+8040335 MsG0780036430.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATACAAAAAAAAAATAAAA+CGG - Chr7:8040795-8040814 None:intergenic 10.0%
!! AAAAAATAAAACGGAAATCA+AGG - Chr7:8040786-8040805 None:intergenic 20.0%
!! AAAAATAAAACGGAAATCAA+GGG - Chr7:8040785-8040804 None:intergenic 20.0%
!! AATTCAAATTCTTAAACTGA+AGG - Chr7:8041137-8041156 None:intergenic 20.0%
!! TTCAGTTTAAGAATTTGAAT+TGG + Chr7:8041136-8041155 MsG0780036430.01.T01:intron 20.0%
!!! ATCAGATTCAATCTTTTTAA+TGG - Chr7:8040179-8040198 None:intergenic 20.0%
!!! ATCTTCATTAGTTTTATCAA+AGG - Chr7:8040231-8040250 None:intergenic 20.0%
!!! TATTAGTGATTAGTTGTTTT+GGG + Chr7:8041277-8041296 MsG0780036430.01.T01:intron 20.0%
!!! TCAGATTCAATCTTTTTAAT+GGG - Chr7:8040178-8040197 None:intergenic 20.0%
!!! TTATTAGTGATTAGTTGTTT+TGG + Chr7:8041276-8041295 MsG0780036430.01.T01:intron 20.0%
!!! TTTAAGAATTTGAGAGATTT+TGG + Chr7:8041782-8041801 MsG0780036430.01.T01:CDS 20.0%
! AAAAAGACTTATTTGAATCG+AGG + Chr7:8039625-8039644 MsG0780036430.01.T01:intron 25.0%
! AAGAAAGAATCTTAAACTGA+AGG - Chr7:8041712-8041731 None:intergenic 25.0%
! ATCAAAGAAGTAAATTAGAG+AGG + Chr7:8039735-8039754 MsG0780036430.01.T01:intron 25.0%
! ATTATCTTCTATTGACAAAC+AGG + Chr7:8040370-8040389 MsG0780036430.01.T01:CDS 25.0%
! TCAAAGAAGTAAATTAGAGA+GGG + Chr7:8039736-8039755 MsG0780036430.01.T01:intron 25.0%
! TGTTATCCAAAACTTATTGT+TGG - Chr7:8041674-8041693 None:intergenic 25.0%
! TGTTTGTCAATAGAAGATAA+TGG - Chr7:8040371-8040390 None:intergenic 25.0%
! TTATCTTCTATTGACAAACA+GGG + Chr7:8040371-8040390 MsG0780036430.01.T01:CDS 25.0%
!! AAGCTATATGTTACTTATTC+CGG + Chr7:8041195-8041214 MsG0780036430.01.T01:intron 25.0%
!! ATAAGAAAGTTTCCTGTTTT+GGG + Chr7:8041221-8041240 MsG0780036430.01.T01:intron 25.0%
!! CAGATTCAATCTTTTTAATG+GGG - Chr7:8040177-8040196 None:intergenic 25.0%
!! GAATTTCCAACAATAAGTTT+TGG + Chr7:8041665-8041684 MsG0780036430.01.T01:intron 25.0%
!! TATAAGAAAGTTTCCTGTTT+TGG + Chr7:8041220-8041239 MsG0780036430.01.T01:intron 25.0%
!!! GAATCTGATGTTGATAATTT+AGG + Chr7:8040190-8040209 MsG0780036430.01.T01:intron 25.0%
AAACTACAACAAAACGAAGA+AGG + Chr7:8039381-8039400 MsG0780036430.01.T01:CDS 30.0%
AGCCTATATAAACACATTAG+TGG + Chr7:8041337-8041356 MsG0780036430.01.T01:intron 30.0%
ATAGGCTAATGTAACTTGAT+GGG - Chr7:8041324-8041343 None:intergenic 30.0%
ATGTAAATCTGGATTCTTCT+AGG + Chr7:8040051-8040070 MsG0780036430.01.T01:CDS 30.0%
CACCACTAATGTGTTTATAT+AGG - Chr7:8041342-8041361 None:intergenic 30.0%
CTCTCAAATTCTTAAACTGA+AGG - Chr7:8041778-8041797 None:intergenic 30.0%
CTGATACCATGTTGTAATTT+GGG + Chr7:8041446-8041465 MsG0780036430.01.T01:intron 30.0%
CTTGAGAAGAGTTTATAAAG+AGG - Chr7:8041517-8041536 None:intergenic 30.0%
GGATATCTTGAAAATCTTAG+AGG - Chr7:8040156-8040175 None:intergenic 30.0%
GGCAAGACTAATAAACTAAT+GGG - Chr7:8041303-8041322 None:intergenic 30.0%
GGTGAAACAAGATATAATTG+AGG + Chr7:8040740-8040759 MsG0780036430.01.T01:CDS 30.0%
TATAGGCTAATGTAACTTGA+TGG - Chr7:8041325-8041344 None:intergenic 30.0%
TATCAATTTCTTGAGAGAAG+TGG + Chr7:8039686-8039705 MsG0780036430.01.T01:intron 30.0%
TCTCAAAATCCAAAAGCAAT+TGG - Chr7:8039555-8039574 None:intergenic 30.0%
TCTGATACCATGTTGTAATT+TGG + Chr7:8041445-8041464 MsG0780036430.01.T01:intron 30.0%
TGATACCATGTTGTAATTTG+GGG + Chr7:8041447-8041466 MsG0780036430.01.T01:intron 30.0%
! GATATAGTACGCTTTTCAAT+TGG + Chr7:8041043-8041062 MsG0780036430.01.T01:intron 30.0%
! GTAATATCACCAACCAATTT+TGG - Chr7:8040017-8040036 None:intergenic 30.0%
! TGAGAAAAACCAATTGCTTT+TGG + Chr7:8039543-8039562 MsG0780036430.01.T01:intron 30.0%
!! ATGTTGATAATTTAGGAGTG+TGG + Chr7:8040197-8040216 MsG0780036430.01.T01:intron 30.0%
!! TTTGGTGTGTTCATAAGTTT+TGG + Chr7:8041800-8041819 MsG0780036430.01.T01:CDS 30.0%
AAAAAAGAACGGCGAATTTG+CGG + Chr7:8040583-8040602 MsG0780036430.01.T01:CDS 35.0%
AAAACGAAGAAGGAGTAAGA+AGG + Chr7:8039391-8039410 MsG0780036430.01.T01:CDS 35.0%
AAATCATTTCTCCACAGTTC+TGG - Chr7:8039929-8039948 None:intergenic 35.0%
AAGGACATTCTGATATACCA+GGG + Chr7:8040666-8040685 MsG0780036430.01.T01:CDS 35.0%
ACAGAAGGACTATTTACAGA+GGG + Chr7:8039438-8039457 MsG0780036430.01.T01:CDS 35.0%
ATATCAGAATGTCCTTCACT+GGG - Chr7:8040662-8040681 None:intergenic 35.0%
ATGATTCTTTGATGCTCCAA+GGG + Chr7:8040308-8040327 MsG0780036430.01.T01:intron 35.0%
ATTTACAGCCTCCAATTCAA+AGG + Chr7:8040420-8040439 MsG0780036430.01.T01:CDS 35.0%
CACTTATAACAACCCAAAAC+AGG - Chr7:8041236-8041255 None:intergenic 35.0%
CAGGAAACTTTCTTATAGAC+CGG - Chr7:8041217-8041236 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + Chr7:8041471-8041490 MsG0780036430.01.T01:intron 35.0%
GAAAACATGTTGAGAGACAA+AGG + Chr7:8039783-8039802 MsG0780036430.01.T01:intron 35.0%
GAAACCACCTGAAAAAAGAA+CGG + Chr7:8040572-8040591 MsG0780036430.01.T01:CDS 35.0%
GAGAAGAGTTTATAAAGAGG+AGG - Chr7:8041514-8041533 None:intergenic 35.0%
GGGCAAGACTAATAAACTAA+TGG - Chr7:8041304-8041323 None:intergenic 35.0%
GTACTTGAGATGATTGAATC+CGG - Chr7:8040617-8040636 None:intergenic 35.0%
TAAGAAGGAGAAGCAAAAGA+AGG + Chr7:8039406-8039425 MsG0780036430.01.T01:CDS 35.0%
TATATCAGAATGTCCTTCAC+TGG - Chr7:8040663-8040682 None:intergenic 35.0%
TCAGAGGGAACAATTTATTG+TGG + Chr7:8039861-8039880 MsG0780036430.01.T01:intron 35.0%
TGCTGACATTGAGAATATAG+AGG + Chr7:8039980-8039999 MsG0780036430.01.T01:CDS 35.0%
! CTGATTTTCAGAATCCATGT+TGG - Chr7:8040553-8040572 None:intergenic 35.0%
! TCATTTTGAGCTTTTCAGCT+AGG - Chr7:8039526-8039545 None:intergenic 35.0%
! TTTTCCAAATGGAATTGCTG+AGG + Chr7:8040521-8040540 MsG0780036430.01.T01:CDS 35.0%
!! ACCTTAAAACCGGTTTTGTA+AGG - Chr7:8041483-8041502 None:intergenic 35.0%
!! ATTGGTTGGTGATATTACAC+AGG + Chr7:8040019-8040038 MsG0780036430.01.T01:CDS 35.0%
!! TCCTTACAAAACCGGTTTTA+AGG + Chr7:8041479-8041498 MsG0780036430.01.T01:intron 35.0%
!! TTGGTTGGTGATATTACACA+GGG + Chr7:8040020-8040039 MsG0780036430.01.T01:CDS 35.0%
!!! AAATTCGCCGTTCTTTTTTC+AGG - Chr7:8040582-8040601 None:intergenic 35.0%
!!! TGCTTTTGGATTTTGAGATG+CGG + Chr7:8039557-8039576 MsG0780036430.01.T01:intron 35.0%
AAGTGGCTAATAGAGAATGG+AGG + Chr7:8039703-8039722 MsG0780036430.01.T01:intron 40.0%
AATGAAGGCTAACCAAAGGT+CGG + Chr7:8041607-8041626 MsG0780036430.01.T01:intron 40.0%
ACAAGAAGCTGAAAAGTCAG+AGG + Chr7:8039845-8039864 MsG0780036430.01.T01:intron 40.0%
AGAGACAAAGGATAGAAAGC+AGG + Chr7:8039795-8039814 MsG0780036430.01.T01:intron 40.0%
ATCTGGCAATGATATCACAG+AGG + Chr7:8040335-8040354 MsG0780036430.01.T01:CDS 40.0%
ATGATACCACAACCAACAAC+AGG + Chr7:8041882-8041901 MsG0780036430.01.T01:CDS 40.0%
CAAGAAGCTGAAAAGTCAGA+GGG + Chr7:8039846-8039865 MsG0780036430.01.T01:intron 40.0%
CACAGAAGGACTATTTACAG+AGG + Chr7:8039437-8039456 MsG0780036430.01.T01:CDS 40.0%
CCTATCCTAGATCTATCGTT+GGG - Chr7:8041424-8041443 None:intergenic 40.0%
CCTTCTCATTCACATTCAGT+CGG + Chr7:8040972-8040991 MsG0780036430.01.T01:intron 40.0%
CCTTCTCTTCCAAAATTGGT+TGG + Chr7:8040005-8040024 MsG0780036430.01.T01:CDS 40.0%
GAAGAATGTGCTTCAACAGA+AGG + Chr7:8039348-8039367 MsG0780036430.01.T01:CDS 40.0%
GAAGGACATTCTGATATACC+AGG + Chr7:8040665-8040684 MsG0780036430.01.T01:CDS 40.0%
GAATCCTCAGCAATTCCATT+TGG - Chr7:8040528-8040547 None:intergenic 40.0%
GAATTTGAATTGGCAGTGAG+AGG + Chr7:8041146-8041165 MsG0780036430.01.T01:intron 40.0%
GAGAAGTGGCTAATAGAGAA+TGG + Chr7:8039700-8039719 MsG0780036430.01.T01:intron 40.0%
GATGAAGATTACCAACACTC+TGG + Chr7:8042022-8042041 MsG0780036430.01.T01:CDS 40.0%
GATGATTCTTTGATGCTCCA+AGG + Chr7:8040307-8040326 MsG0780036430.01.T01:intron 40.0%
TAAAAACATCAGGCACACCA+TGG - Chr7:8040849-8040868 None:intergenic 40.0%
TATGCTGTCCTCATTCTCAT+TGG - Chr7:8041003-8041022 None:intergenic 40.0%
TGAATCGAGGAAGTTATTCG+AGG + Chr7:8039638-8039657 MsG0780036430.01.T01:intron 40.0%
TGATACCACAACCAACAACA+GGG + Chr7:8041883-8041902 MsG0780036430.01.T01:CDS 40.0%
TGGAAATTCCGCCTTAATTG+CGG - Chr7:8041654-8041673 None:intergenic 40.0%
TTAGGCCCCAAATTACAACA+TGG - Chr7:8041455-8041474 None:intergenic 40.0%
! AGAGTCATTTGCTGCTGAAA+TGG + Chr7:8039485-8039504 MsG0780036430.01.T01:CDS 40.0%
! ATCAAGGGTATACTCACGTT+TGG - Chr7:8040770-8040789 None:intergenic 40.0%
! ATCATCTCAAGTACTGCTAG+TGG + Chr7:8040623-8040642 MsG0780036430.01.T01:CDS 40.0%
! ATTTGCTGCTGAAATGGAGT+TGG + Chr7:8039491-8039510 MsG0780036430.01.T01:CDS 40.0%
! GACTTTTCAGCTTCTTGTTG+AGG - Chr7:8039843-8039862 None:intergenic 40.0%
! TCAAGGGTATACTCACGTTT+GGG - Chr7:8040769-8040788 None:intergenic 40.0%
! TCATCTCAAGTACTGCTAGT+GGG + Chr7:8040624-8040643 MsG0780036430.01.T01:CDS 40.0%
!! CCAACCAATTTTGGAAGAGA+AGG - Chr7:8040008-8040027 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - Chr7:8041473-8041492 None:intergenic 40.0%
!! CGTGAGACTGATTTTCCAAA+TGG + Chr7:8040510-8040529 MsG0780036430.01.T01:CDS 40.0%
!! CTTCATTGTGTTGGCTTTGA+GGG - Chr7:8041573-8041592 None:intergenic 40.0%
!! TTCATTGTGTTGGCTTTGAG+GGG - Chr7:8041572-8041591 None:intergenic 40.0%
!!! ACAAAACCGGTTTTAAGGTG+AGG + Chr7:8041484-8041503 MsG0780036430.01.T01:intron 40.0%
!!! GGTTTGGTGTTGATCAGTTT+TGG + Chr7:8041167-8041186 MsG0780036430.01.T01:intron 40.0%
!!! GTGAATGAGAAGGTTTTGAG+TGG - Chr7:8040965-8040984 None:intergenic 40.0%
AAAGAAAGTGAGGGAGAGGT+TGG + Chr7:8040913-8040932 MsG0780036430.01.T01:intron 45.0%
AAGATCATGATGCCGAGTAC+AGG + Chr7:8041945-8041964 MsG0780036430.01.T01:CDS 45.0%
ACACTCTGGTGAAACATCAG+TGG + Chr7:8042036-8042055 MsG0780036430.01.T01:CDS 45.0%
ACGGAATTCACTCCTGTACT+CGG - Chr7:8041960-8041979 None:intergenic 45.0%
AGGACTATTTACAGAGGGAG+TGG + Chr7:8039443-8039462 MsG0780036430.01.T01:CDS 45.0%
ATATACCAGGGAGACCCAAA+AGG + Chr7:8040678-8040697 MsG0780036430.01.T01:CDS 45.0%
CACTCTGGTGAAACATCAGT+GGG + Chr7:8042037-8042056 MsG0780036430.01.T01:CDS 45.0%
CATCAGTGGGTAAGAAGCTT+TGG + Chr7:8042050-8042069 MsG0780036430.01.T01:CDS 45.0%
CCGACTGAATGTGAATGAGA+AGG - Chr7:8040975-8040994 None:intergenic 45.0%
CCTCAAAGCCAACACAATGA+AGG + Chr7:8041571-8041590 MsG0780036430.01.T01:intron 45.0%
CGGCATTACCAATGAGAATG+AGG + Chr7:8040992-8041011 MsG0780036430.01.T01:intron 45.0%
CTCCAACACCTTCATTGTGT+TGG - Chr7:8041582-8041601 None:intergenic 45.0%
CTGATGTTTCACCAGAGTGT+TGG - Chr7:8042036-8042055 None:intergenic 45.0%
CTGCAATGAAGGCTAACCAA+AGG + Chr7:8041603-8041622 MsG0780036430.01.T01:intron 45.0%
CTTCAAAGTTGCCAGAACTG+TGG + Chr7:8039915-8039934 MsG0780036430.01.T01:CDS 45.0%
GACAAAGGATAGAAAGCAGG+AGG + Chr7:8039798-8039817 MsG0780036430.01.T01:intron 45.0%
GAGTGCTATCTATCCGATGT+GGG + Chr7:8041536-8041555 MsG0780036430.01.T01:intron 45.0%
GATTTGCCAGCAAATGTTCC+TGG + Chr7:8040248-8040267 MsG0780036430.01.T01:intron 45.0%
GCAGAATCAGTTAGAGCAGA+AGG + Chr7:8039602-8039621 MsG0780036430.01.T01:intron 45.0%
GCCTATCCTAGATCTATCGT+TGG - Chr7:8041425-8041444 None:intergenic 45.0%
GCTAACCAAAGGTCGGATTT+AGG + Chr7:8041614-8041633 MsG0780036430.01.T01:intron 45.0%
GGACAGCATAGACATTGATC+AGG + Chr7:8041013-8041032 MsG0780036430.01.T01:intron 45.0%
GGACTTTGTATCAGTTGCAG+GGG - Chr7:8040093-8040112 None:intergenic 45.0%
GGGACTTTGTATCAGTTGCA+GGG - Chr7:8040094-8040113 None:intergenic 45.0%
GGTGCCTTCTCTTCCAAAAT+TGG + Chr7:8040001-8040020 MsG0780036430.01.T01:CDS 45.0%
GTCGCACCACTAAAAACATC+AGG - Chr7:8040859-8040878 None:intergenic 45.0%
TCATTGCCAGATTGTACCCT+TGG - Chr7:8040327-8040346 None:intergenic 45.0%
TGAATTGGCAGTGAGAGGTT+TGG + Chr7:8041151-8041170 MsG0780036430.01.T01:intron 45.0%
! AGAGTGCTATCTATCCGATG+TGG + Chr7:8041535-8041554 MsG0780036430.01.T01:intron 45.0%
! AGCCAACACAATGAAGGTGT+TGG + Chr7:8041577-8041596 MsG0780036430.01.T01:intron 45.0%
! AGCCTTTTGATGCCTCCTTT+TGG - Chr7:8040696-8040715 None:intergenic 45.0%
! CCCAACGATAGATCTAGGAT+AGG + Chr7:8041421-8041440 MsG0780036430.01.T01:intron 45.0%
! GCCTTTTGATGCCTCCTTTT+GGG - Chr7:8040695-8040714 None:intergenic 45.0%
! GTTGCTTTCCCAACTTACCA+TGG + Chr7:8040829-8040848 MsG0780036430.01.T01:intron 45.0%
!! ACCCAAAAGGAGGCATCAAA+AGG + Chr7:8040691-8040710 MsG0780036430.01.T01:CDS 45.0%
!! CAACACAATGAAGGTGTTGG+AGG + Chr7:8041580-8041599 MsG0780036430.01.T01:intron 45.0%
!! CCTTCATTGTGTTGGCTTTG+AGG - Chr7:8041574-8041593 None:intergenic 45.0%
!! GGGTGGTTCTGATGTAAATC+TGG + Chr7:8040040-8040059 MsG0780036430.01.T01:CDS 45.0%
!! GTTGGTGATATTACACAGGG+TGG + Chr7:8040023-8040042 MsG0780036430.01.T01:CDS 45.0%
!! TCATTGTGTTGGCTTTGAGG+GGG - Chr7:8041571-8041590 None:intergenic 45.0%
!!! GGTGTGCCTGATGTTTTTAG+TGG + Chr7:8040850-8040869 MsG0780036430.01.T01:intron 45.0%
!!! TTCGCCGTTCTTTTTTCAGG+TGG - Chr7:8040579-8040598 None:intergenic 45.0%
AAGGTCGGATTTAGGCGACT+AGG + Chr7:8041622-8041641 MsG0780036430.01.T01:intron 50.0%
ACAGCCTCCAATTCAAAGGC+TGG + Chr7:8040424-8040443 MsG0780036430.01.T01:CDS 50.0%
AGAAGGAGAAGCAGCACAGA+AGG + Chr7:8039423-8039442 MsG0780036430.01.T01:CDS 50.0%
AGACAGTTCCACCAGGAACA+GGG - Chr7:8040115-8040134 None:intergenic 50.0%
AGGTCGGATTTAGGCGACTA+GGG + Chr7:8041623-8041642 MsG0780036430.01.T01:intron 50.0%
AGTCGCCTAAATCCGACCTT+TGG - Chr7:8041622-8041641 None:intergenic 50.0%
AGTGAAGCGCACACAAACTG+TGG + Chr7:8040482-8040501 MsG0780036430.01.T01:CDS 50.0%
AGTTTGTGTGCGCTTCACTC+TGG - Chr7:8040481-8040500 None:intergenic 50.0%
CAGGCACACCATGGTAAGTT+GGG - Chr7:8040840-8040859 None:intergenic 50.0%
CATGGAGATGATCCCAGTGA+AGG + Chr7:8040647-8040666 MsG0780036430.01.T01:CDS 50.0%
CATTGTCGTCGTCGTCAACT+CGG - Chr7:8041997-8042016 None:intergenic 50.0%
CGAATTTGCGGAAGCGAAAC+CGG + Chr7:8040595-8040614 MsG0780036430.01.T01:CDS 50.0%
CTCACTCAAAGCCCTGTTGT+TGG - Chr7:8041897-8041916 None:intergenic 50.0%
CTGCTGTCCAGCCTTTGAAT+TGG - Chr7:8040434-8040453 None:intergenic 50.0%
CTGTCCAGCCTTTGAATTGG+AGG - Chr7:8040431-8040450 None:intergenic 50.0%
GAATTCCGTGGAGAAGATGC+AGG + Chr7:8041971-8041990 MsG0780036430.01.T01:CDS 50.0%
GAGTACAGGAGTGAATTCCG+TGG + Chr7:8041959-8041978 MsG0780036430.01.T01:CDS 50.0%
GATACAAAGTCCCCTGTTCC+TGG + Chr7:8040101-8040120 MsG0780036430.01.T01:CDS 50.0%
GGAAGCCCAACGATAGATCT+AGG + Chr7:8041416-8041435 MsG0780036430.01.T01:intron 50.0%
GGCACTCCTCACCTTAAAAC+CGG - Chr7:8041493-8041512 None:intergenic 50.0%
GGGAGTGGAAACTCTTAAGC+TGG + Chr7:8039458-8039477 MsG0780036430.01.T01:CDS 50.0%
GGGGACTTTGTATCAGTTGC+AGG - Chr7:8040095-8040114 None:intergenic 50.0%
GTTTCACCAGCAGTTTGTGC+CGG - Chr7:8040728-8040747 None:intergenic 50.0%
TCAGGCACACCATGGTAAGT+TGG - Chr7:8040841-8040860 None:intergenic 50.0%
TCAGTGCCAGGAACATTTGC+TGG - Chr7:8040257-8040276 None:intergenic 50.0%
TCTGTTAGAGACGTGTCTGC+TGG + Chr7:8040886-8040905 MsG0780036430.01.T01:intron 50.0%
TGCTGAGGATTCTGCCAACA+TGG + Chr7:8040536-8040555 MsG0780036430.01.T01:CDS 50.0%
TTCCTGGTGGAACTGTCTCT+TGG + Chr7:8040117-8040136 MsG0780036430.01.T01:CDS 50.0%
! CAAAGCCCTGTTGTTGGTTG+TGG - Chr7:8041891-8041910 None:intergenic 50.0%
! GATGCTCCAAGGGTACAATC+TGG + Chr7:8040318-8040337 MsG0780036430.01.T01:intron 50.0%
! GCTTTGAGTGAGGAGGTGAA+CGG + Chr7:8041905-8041924 MsG0780036430.01.T01:CDS 50.0%
! TCAAGTACTGCTAGTGGGCA+TGG + Chr7:8040629-8040648 MsG0780036430.01.T01:CDS 50.0%
!! CAACAACAGGGCTTTGAGTG+AGG + Chr7:8041895-8041914 MsG0780036430.01.T01:CDS 50.0%
!! TCTCTGCTGCTTTCTGAGAC+TGG - Chr7:8041850-8041869 None:intergenic 50.0%
ACAAAGTCCCCTGTTCCTGG+TGG + Chr7:8040104-8040123 MsG0780036430.01.T01:CDS 55.0%
AGCAGAAACCTCGCAGAGGA+GGG + Chr7:8040449-8040468 MsG0780036430.01.T01:CDS 55.0%
AGCCAAGAGACAGTTCCACC+AGG - Chr7:8040122-8040141 None:intergenic 55.0%
CGGCAAAGAAAGTGAGGGAG+AGG + Chr7:8040909-8040928 MsG0780036430.01.T01:intron 55.0%
CTCGCTTCATTCTCAGTGCC+AGG - Chr7:8040269-8040288 None:intergenic 55.0%
GACAGTTCCACCAGGAACAG+GGG - Chr7:8040114-8040133 None:intergenic 55.0%
GAGACAGTTCCACCAGGAAC+AGG - Chr7:8040116-8040135 None:intergenic 55.0%
GCTGGCGGCAAAGAAAGTGA+GGG + Chr7:8040904-8040923 MsG0780036430.01.T01:intron 55.0%
GGTCGGATTTAGGCGACTAG+GGG + Chr7:8041624-8041643 MsG0780036430.01.T01:intron 55.0%
GTTAGAGACGTGTCTGCTGG+CGG + Chr7:8040889-8040908 MsG0780036430.01.T01:intron 55.0%
TACCAGGGAGACCCAAAAGG+AGG + Chr7:8040681-8040700 MsG0780036430.01.T01:CDS 55.0%
TCAAAAGGCTGCTGCTCCTC+CGG + Chr7:8040706-8040725 MsG0780036430.01.T01:CDS 55.0%
TGCTGGCGGCAAAGAAAGTG+AGG + Chr7:8040903-8040922 MsG0780036430.01.T01:intron 55.0%
! GGGGTGGATTTAGCCCACAT+CGG - Chr7:8041552-8041571 None:intergenic 55.0%
! GGTGTTGGAGGCTGCAATGA+AGG + Chr7:8041592-8041611 MsG0780036430.01.T01:intron 55.0%
! GGTTGGTCGTGCAAAGATGC+AGG + Chr7:8040930-8040949 MsG0780036430.01.T01:intron 55.0%
!! CAACAGGGCTTTGAGTGAGG+AGG + Chr7:8041898-8041917 MsG0780036430.01.T01:CDS 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG - Chr7:8041568-8041587 None:intergenic 55.0%
AACCTCGCAGAGGAGGGGTA+AGG + Chr7:8040455-8040474 MsG0780036430.01.T01:CDS 60.0%
CAGCAGAAACCTCGCAGAGG+AGG + Chr7:8040448-8040467 MsG0780036430.01.T01:CDS 60.0%
CGGATTTAGGCGACTAGGGG+CGG + Chr7:8041627-8041646 MsG0780036430.01.T01:intron 60.0%
CTAGGGGCGGACCGCAATTA+AGG + Chr7:8041640-8041659 MsG0780036430.01.T01:intron 60.0%
CTCGGCCTGCATCTTCTCCA+CGG - Chr7:8041979-8041998 None:intergenic 60.0%
GCAGAAACCTCGCAGAGGAG+GGG + Chr7:8040450-8040469 MsG0780036430.01.T01:CDS 60.0%
GGACAGCAGAAACCTCGCAG+AGG + Chr7:8040445-8040464 MsG0780036430.01.T01:CDS 60.0%
GTCCACGCTTCAGGCCCATT+GGG - Chr7:8041390-8041409 None:intergenic 60.0%
TCACCAGCAGTTTGTGCCGG+AGG - Chr7:8040725-8040744 None:intergenic 60.0%
!! TGCCTCCTTTTGGGTCTCCC+TGG - Chr7:8040686-8040705 None:intergenic 60.0%
AACACCCCCACGCTTCAGCC+CGG + Chr7:8041364-8041383 MsG0780036430.01.T01:intron 65.0%
ACGCTTCAGCCCGGCCCAAT+GGG + Chr7:8041373-8041392 MsG0780036430.01.T01:intron 65.0%
ACGCTTCAGGCCCATTGGGC+CGG - Chr7:8041386-8041405 None:intergenic 65.0%
ATTGGGCCGGGCTGAAGCGT+GGG - Chr7:8041373-8041392 None:intergenic 65.0%
CGTCCACGCTTCAGGCCCAT+TGG - Chr7:8041391-8041410 None:intergenic 65.0%
GCCTGAAGCGTGGACGATGC+GGG + Chr7:8041395-8041414 MsG0780036430.01.T01:intron 65.0%
GCTCCTCCGGCACAAACTGC+TGG + Chr7:8040719-8040738 MsG0780036430.01.T01:CDS 65.0%
GGCCTGAAGCGTGGACGATG+CGG + Chr7:8041394-8041413 MsG0780036430.01.T01:intron 65.0%
GGGGCGGACCGCAATTAAGG+CGG + Chr7:8041643-8041662 MsG0780036430.01.T01:intron 65.0%
TCCCGCATCGTCCACGCTTC+AGG - Chr7:8041399-8041418 None:intergenic 65.0%
CACGCTTCAGCCCGGCCCAA+TGG + Chr7:8041372-8041391 MsG0780036430.01.T01:intron 70.0%
CATTGGGCCGGGCTGAAGCG+TGG - Chr7:8041374-8041393 None:intergenic 70.0%
CGCTTCAGGCCCATTGGGCC+GGG - Chr7:8041385-8041404 None:intergenic 70.0%
GGCCCAATGGGCCTGAAGCG+TGG + Chr7:8041385-8041404 MsG0780036430.01.T01:intron 70.0%
GGCCTTACCCCTCCTCTGCG+AGG - Chr7:8040460-8040479 None:intergenic 70.0%
TTGGGCCGGGCTGAAGCGTG+GGG - Chr7:8041372-8041391 None:intergenic 70.0%
TGGGCCGGGCTGAAGCGTGG+GGG - Chr7:8041371-8041390 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 8039333 8042090 8039333 ID=MsG0780036430.01;Name=MsG0780036430.01
Chr7 mRNA 8039333 8042090 8039333 ID=MsG0780036430.01.T01;Parent=MsG0780036430.01;Name=MsG0780036430.01.T01;_AED=0.36;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|410
Chr7 exon 8039333 8039517 8039333 ID=MsG0780036430.01.T01:exon:2337;Parent=MsG0780036430.01.T01
Chr7 exon 8039911 8040198 8039911 ID=MsG0780036430.01.T01:exon:2338;Parent=MsG0780036430.01.T01
Chr7 exon 8040329 8040772 8040329 ID=MsG0780036430.01.T01:exon:2339;Parent=MsG0780036430.01.T01
Chr7 exon 8041775 8042090 8041775 ID=MsG0780036430.01.T01:exon:2340;Parent=MsG0780036430.01.T01
Chr7 CDS 8039333 8039517 8039333 ID=MsG0780036430.01.T01:cds;Parent=MsG0780036430.01.T01
Chr7 CDS 8039911 8040198 8039911 ID=MsG0780036430.01.T01:cds;Parent=MsG0780036430.01.T01
Chr7 CDS 8040329 8040772 8040329 ID=MsG0780036430.01.T01:cds;Parent=MsG0780036430.01.T01
Chr7 CDS 8041775 8042090 8041775 ID=MsG0780036430.01.T01:cds;Parent=MsG0780036430.01.T01
Gene Sequence

>MsG0780036430.01.T01

ATGTGGAGAAAAGCTGAAGAATGTGCTTCAACAGAAGGAAGAAATTTTAAACTACAACAAAACGAAGAAGGAGTAAGAAGGAGAAGCAAAAGAAGGAGAAGCAGCACAGAAGGACTATTTACAGAGGGAGTGGAAACTCTTAAGCTGGCTAAAGAGTCATTTGCTGCTGAAATGGAGTTGGAAAAAGAACTTCAAAGTTGCCAGAACTGTGGAGAAATGATTTCTGAATTTGTGCTGTCTGATTTACAATCTTCTGCTGACATTGAGAATATAGAGGTGCCTTCTCTTCCAAAATTGGTTGGTGATATTACACAGGGTGGTTCTGATGTAAATCTGGATTCTTCTAGGCAAAACACAAGAGCATCCCCTGCAACTGATACAAAGTCCCCTGTTCCTGGTGGAACTGTCTCTTGGCTTCGAAAATGCACCTCTAAGATTTTCAAGATATCCCCATTAAAAAGATTGAATCTGATGGTACAATCTGGCAATGATATCACAGAGGTTGAAGCTGACCATTATCTTCTATTGACAAACAGGGCAACATTGACACTACAGCGACAGATGATTTACAGCCTCCAATTCAAAGGCTGGACAGCAGAAACCTCGCAGAGGAGGGGTAAGGCCAGAGTGAAGCGCACACAAACTGTGGATGATCGTGAGACTGATTTTCCAAATGGAATTGCTGAGGATTCTGCCAACATGGATTCTGAAAATCAGAAACCACCTGAAAAAAGAACGGCGAATTTGCGGAAGCGAAACCGGATTCAATCATCTCAAGTACTGCTAGTGGGCATGGAGATGATCCCAGTGAAGGACATTCTGATATACCAGGGAGACCCAAAAGGAGGCATCAAAAGGCTGCTGCTCCTCCGGCACAAACTGCTGGTGAAACAAGATATAATTGAGGCGTCCCAAACCCTTCAGTTTAAGAATTTGAGAGATTTTGGTGTGTTCATAAGTTTTGGATATCTAGCTAAATGTTGCTTGTTCCAGTCTCAGAAAGCAGCAGAGACGCATGATGATGATGATACCACAACCAACAACAGGGCTTTGAGTGAGGAGGTGAACGGAACAGCAGACGACGTTGAAGATCATGATGCCGAGTACAGGAGTGAATTCCGTGGAGAAGATGCAGGCCGAGTTGACGACGACGACAATGAGATTGATGAAGATTACCAACACTCTGGTGAAACATCAGTGGGTAAGAAGCTTTGGAATTTTTTTACAACATAA

Protein sequence

>MsG0780036430.01.T01

MWRKAEECASTEGRNFKLQQNEEGVRRRSKRRRSSTEGLFTEGVETLKLAKESFAAEMELEKELQSCQNCGEMISEFVLSDLQSSADIENIEVPSLPKLVGDITQGGSDVNLDSSRQNTRASPATDTKSPVPGGTVSWLRKCTSKIFKISPLKRLNLMVQSGNDITEVEADHYLLLTNRATLTLQRQMIYSLQFKGWTAETSQRRGKARVKRTQTVDDRETDFPNGIAEDSANMDSENQKPPEKRTANLRKRNRIQSSQVLLVGMEMIPVKDILIYQGDPKGGIKRLLLLRHKLLVKQDIIEASQTLQFKNLRDFGVFISFGYLAKCCLFQSQKAAETHDDDDTTTNNRALSEEVNGTADDVEDHDAEYRSEFRGEDAGRVDDDDNEIDEDYQHSGETSVGKKLWNFFTT*