AlfalfaGEDB | MsG0780036516.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036516.01

KEGG: -
GO: GO:0016020 GO:0022857 GO:0055085
PFAM: PF00854

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036516.01.T01	XP_024626124.1	94.463	596	30	2	2	595	202	796	0	1108

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036516.01.T01	Q3E9B5	66.969	551	164	5	38	585	60	595	0	761

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036516.01.T01	G7L599	94.599	574	28	2	24	595	75	647	0.0	1069

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180001738.01	MsG0780036516.01	PPI
MsG0180001746.01	MsG0780036516.01	PPI
MsG0180001752.01	MsG0780036516.01	PPI
MsG0180001755.01	MsG0780036516.01	PPI
MsG0180003268.01	MsG0780036516.01	PPI
MsG0180004112.01	MsG0780036516.01	PPI
MsG0280006291.01	MsG0780036516.01	PPI
MsG0380015545.01	MsG0780036516.01	PPI
MsG0480018400.01	MsG0780036516.01	PPI
MsG0480018400.01	MsG0780036516.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036516.01.T01	MTR_7g013270	94.599	574	28	2	24	595	75	647	0.0	1069
MsG0780036516.01.T01	MTR_7g005930	88.285	589	62	3	3	589	1	584	0.0	1056
MsG0780036516.01.T01	MTR_1g116930	70.841	559	153	4	38	595	24	573	0.0	822
MsG0780036516.01.T01	MTR_4g098800	60.036	553	211	5	29	575	93	641	0.0	669
MsG0780036516.01.T01	MTR_4g098800	60.036	553	211	5	29	575	28	576	0.0	668
MsG0780036516.01.T01	MTR_5g014150	59.615	572	209	8	31	590	38	599	0.0	664
MsG0780036516.01.T01	MTR_7g010820	59.337	573	211	7	28	583	17	584	0.0	652
MsG0780036516.01.T01	MTR_3g462710	45.404	544	283	7	36	571	23	560	3.46e-166	486
MsG0780036516.01.T01	MTR_7g067010	43.169	549	298	7	31	572	18	559	2.02e-158	466
MsG0780036516.01.T01	MTR_4g015080	42.000	550	305	8	29	571	26	568	6.95e-152	449

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036516.01.T01	AT5G19640	66.969	551	164	5	38	585	60	595	0.0	761
MsG0780036516.01.T01	AT1G32450	57.417	573	227	8	31	590	31	599	0.0	653
MsG0780036516.01.T01	AT4G21680	56.838	563	223	7	28	576	19	575	0.0	613
MsG0780036516.01.T01	AT3G54140	44.746	552	291	7	29	572	16	561	7.33e-172	500
MsG0780036516.01.T01	AT3G54140	44.746	552	291	7	29	572	16	561	7.33e-172	500
MsG0780036516.01.T01	AT5G01180	41.561	551	307	8	29	571	17	560	1.85e-154	456
MsG0780036516.01.T01	AT5G01180	41.561	551	307	8	29	571	17	560	1.85e-154	456
MsG0780036516.01.T01	AT5G01180	41.561	551	307	8	29	571	17	560	1.85e-154	456
MsG0780036516.01.T01	AT2G02040	41.316	547	308	5	34	572	38	579	5.67e-154	455
MsG0780036516.01.T01	AT1G62200	39.668	542	316	6	36	572	51	586	3.36e-145	432

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Find 156 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCATACATCTTGCT+AGG	0.589781	7:-9172848	MsG0780036516.01.T01:intron
AAAATTAAGTGGTAATCCTA+AGG	0.475355	7:-9171219	MsG0780036516.01.T01:CDS
AAACTATGTTAGCAGCATGA+TGG	0.672075	7:-9170922	MsG0780036516.01.T01:CDS
AAAGAATGCCAGTGTTGCTA+GGG	0.541114	7:+9172714	None:intergenic
AAATTAAAATAGGTGATAGA+AGG	0.440132	7:-9172914	MsG0780036516.01.T01:intron
AAATTAAGTGGTAATCCTAA+GGG	0.543683	7:-9171218	MsG0780036516.01.T01:CDS
AACAATGTCAGCAAGTGGAC+TGG	0.495272	7:-9172625	MsG0780036516.01.T01:CDS
AACACGGACATGGTTGCTGC+TGG	0.422911	7:+9171305	None:intergenic
AACATATGTACCTTATATCG+TGG	0.561166	7:+9171715	None:intergenic
AAGGCTAAAACATGTTATGC+CGG	0.535790	7:-9171114	MsG0780036516.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATATGTACCTTATATCG+TGG	+	Chr7:9172092-9172111	None:intergenic	30.0%
AATCATGTTAAAGTGGCAAT+TGG	-	Chr7:9170914-9170933	MsG0780036516.01.T01:CDS	30.0%
AATTAAGTGGTAATCCTAAG+GGG	-	Chr7:9172587-9172606	MsG0780036516.01.T01:CDS	30.0%
ACATATGTACCTTATATCGT+GGG	+	Chr7:9172091-9172110	None:intergenic	30.0%
AGAAGGAAATCATGTTAAAG+TGG	-	Chr7:9170907-9170926	MsG0780036516.01.T01:CDS	30.0%
ATAAGCGAACTTCAAAGAAT+GGG	-	Chr7:9172610-9172629	MsG0780036516.01.T01:CDS	30.0%
ATACCGAATAACTTGAATGT+TGG	-	Chr7:9172952-9172971	MsG0780036516.01.T01:intron	30.0%
ATATATGCATTCATTGATGC+AGG	-	Chr7:9171510-9171529	MsG0780036516.01.T01:CDS	30.0%
ATCATGTTAAAGTGGCAATT+GGG	-	Chr7:9170915-9170934	MsG0780036516.01.T01:CDS	30.0%
CATTCCTTAGTGATTCTTAT+TGG	-	Chr7:9171231-9171250	MsG0780036516.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	9170695	9173131	9170695	ID=MsG0780036516.01;Name=MsG0780036516.01
Chr7	mRNA	9170695	9173131	9170695	ID=MsG0780036516.01.T01;Parent=MsG0780036516.01;Name=MsG0780036516.01.T01;_AED=0.25;_eAED=0.25;_QI=0\|0\|0\|1\|1\|1\|5\|0\|595
Chr7	exon	9173063	9173131	9173063	ID=MsG0780036516.01.T01:exon:10247;Parent=MsG0780036516.01.T01
Chr7	exon	9172849	9172924	9172849	ID=MsG0780036516.01.T01:exon:10246;Parent=MsG0780036516.01.T01
Chr7	exon	9172528	9172745	9172528	ID=MsG0780036516.01.T01:exon:10245;Parent=MsG0780036516.01.T01
Chr7	exon	9171726	9172294	9171726	ID=MsG0780036516.01.T01:exon:10244;Parent=MsG0780036516.01.T01
Chr7	exon	9170695	9171550	9170695	ID=MsG0780036516.01.T01:exon:10243;Parent=MsG0780036516.01.T01
Chr7	CDS	9173063	9173131	9173063	ID=MsG0780036516.01.T01:cds;Parent=MsG0780036516.01.T01
Chr7	CDS	9172849	9172924	9172849	ID=MsG0780036516.01.T01:cds;Parent=MsG0780036516.01.T01
Chr7	CDS	9172528	9172745	9172528	ID=MsG0780036516.01.T01:cds;Parent=MsG0780036516.01.T01
Chr7	CDS	9171726	9172294	9171726	ID=MsG0780036516.01.T01:cds;Parent=MsG0780036516.01.T01
Chr7	CDS	9170695	9171550	9170695	ID=MsG0780036516.01.T01:cds;Parent=MsG0780036516.01.T01

Gene Sequence

>MsG0780036516.01.T01

ATGCAGATGTCACCAGCAGGATCTGTCGCCTCCTACACTGTCAATCCTGACAAGATTGAAGCAGCTGAGGTGATAGAAGGAAATCATGTTAAAGTGGCAATTGGGAAGAGTAAAGGAGGATGGAAAACTGCATACATCTTGCTAGCTAATCAAGCCCTAGCAACACTGGCATTCTTTGGAGTTGGAGTGAACTTGGTTCTGTTCCTAACAAGAGTCCTTCGTCAAGACAGTGCCGAGGCTGCTAACAATGTCAGCAAGTGGACTGGAACTGTTTACATTTTTTCACTCTTGGGAGCATTCCTTAGTGATTCTTATTGGGGAAGATACTTAACATGCACTATCTTTCAGCTCTTCTTTGTTCTGGGTTTAGGGCTTTTGTCTTTGACATCATGGCTGTTATTGATCAAACCATTAGGTTGCGGTAATGAACATACCGTTTGCAACGAACCAACTTCGTTGGGAACAGGCCTATTCTATTTGTCAATATATATGGTTGCATTTGGATATGGAGGGCATCAACCTACCTTAGCAACCTTTGGAGCTGATCAATTTGATGATGATGATGATAAGAATATTCAAAACACTTACTCGAGAGAGTCTTTCTTTAGTTACTTTTACTTTGCACTCAATGTTGGATCACTCTTTTCCAACACCATTTTGGTTTATTATGAAGATTCCGGTATGTGGACGTTGGGTTTCGGTGTCTCGTTAGCCTCTGCTATTATAGCCTTGATTTCATTCTTAGCAGGATCTCGAAGATATCGTTATGTTAAGGCGTGTGGGAATCCTGTCATAAGAGTAATTCAGGTCTTCGTCGCTGCCGCTAGGAAGTGGAATGTTGAACCTGCCAAGGAGGACCAACTTTACGAGGTTGACGGCCATGAATCCGCCATCAAAGGAAGCAGAAAGATTCTGCACTCCCACGATATAAGATTCATGGACAAGGCAGCAACATGGACATTGAAGGACGGGAATGAATCTGGGAACCAATGGCGGCTTTGTACTGTAACTCAAGTTGAGGAAGCCAAATGTGTGTTGAGAATGATACCAGTTTGGCTGTGCACTATTATTTACTCTGTTGTATTCACACAAATGGCTTCTCTTTTTGTCGAACAAGGCGATGCAATGAACAATAAGGCAGGAAATTTTCACTTCCCAGCAGCAACCATGTCCGTGTTTGATATATGTAGTGTCCTTGTATGTACTGGACTTTATCGTCAAGTTCTTGTTCCCTTGGCCGGAAAATTAAGTGGTAATCCTAAGGGGATAAGCGAACTTCAAAGAATGGGAGTTGGCCTAGTTATCGGAATGTTTGCGATGGTTGCAGCTGGTGCAACGGAGTTTGTAAGGCTAAAACATGTTATGCCGGGAGAGAAGGCTAGTTCTCTGAGTATATTCTATCAAATTCCACAGTATGTTCTTGTTGGTGCTTCAGAAGTTTTTGTGTATGTGGGTCAGTTGGAATTCTTCAATGGTCAAGCTCCCGATGGCATAAAAAGCTTTGGAAGTTCACTTTGTATGGCTTCAATTTCTCTTGGAAACTATGTTAGCAGCATGATGGTGAAATGTGTGATGACAGTCACTGCTAAAGGCGAAGAACCGGGATGGATACCGAATAACTTGAATGTTGGGCACATGGATTGGTTTTTCTACCTCCTCGCAGCGCTAAGTGCTCTTAACCTTGTCGTCTACGTGTTCTGTGCTCGGTGGTACAAGGGCGTCAATAACTTTGAAGGTAGTGTGAATCTCGGAAGCCAAGAGGACGATGAAGCGATTGCTAAAGTTTGA

Protein sequence

>MsG0780036516.01.T01

MQMSPAGSVASYTVNPDKIEAAEVIEGNHVKVAIGKSKGGWKTAYILLANQALATLAFFGVGVNLVLFLTRVLRQDSAEAANNVSKWTGTVYIFSLLGAFLSDSYWGRYLTCTIFQLFFVLGLGLLSLTSWLLLIKPLGCGNEHTVCNEPTSLGTGLFYLSIYMVAFGYGGHQPTLATFGADQFDDDDDKNIQNTYSRESFFSYFYFALNVGSLFSNTILVYYEDSGMWTLGFGVSLASAIIALISFLAGSRRYRYVKACGNPVIRVIQVFVAAARKWNVEPAKEDQLYEVDGHESAIKGSRKILHSHDIRFMDKAATWTLKDGNESGNQWRLCTVTQVEEAKCVLRMIPVWLCTIIYSVVFTQMASLFVEQGDAMNNKAGNFHFPAATMSVFDICSVLVCTGLYRQVLVPLAGKLSGNPKGISELQRMGVGLVIGMFAMVAAGATEFVRLKHVMPGEKASSLSIFYQIPQYVLVGASEVFVYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYVSSMMVKCVMTVTAKGEEPGWIPNNLNVGHMDWFFYLLAALSALNLVVYVFCARWYKGVNNFEGSVNLGSQEDDEAIAKV*