AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001746.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001746.01.T01 MTR_1g041835 86.701 579 31 2 1 533 1 579 0.0 988
MsG0180001746.01.T01 MTR_1g041815 84.983 586 42 2 1 540 1 586 0.0 984
MsG0180001746.01.T01 MTR_1g075440 71.550 587 111 6 1 535 1 583 0.0 851
MsG0180001746.01.T01 MTR_1g042310 68.995 587 132 4 1 540 3 586 0.0 820
MsG0180001746.01.T01 MTR_1g042310 68.488 549 126 3 39 540 1 549 0.0 763
MsG0180001746.01.T01 MTR_1g042310 68.635 542 123 3 46 540 1 542 0.0 755
MsG0180001746.01.T01 MTR_1g041875 65.068 584 150 4 1 537 3 579 0.0 743
MsG0180001746.01.T01 MTR_1g041885 65.863 539 130 4 46 537 1 532 0.0 676
MsG0180001746.01.T01 MTR_7g098040 57.624 564 190 5 9 524 16 578 0.0 664
MsG0180001746.01.T01 MTR_7g098160 57.192 577 196 6 9 537 15 588 0.0 659
MsG0180001746.01.T01 MTR_7g098200 55.342 571 204 6 2 524 6 573 0.0 654
MsG0180001746.01.T01 MTR_7g098200 54.816 571 197 7 2 524 6 563 0.0 640
MsG0180001746.01.T01 MTR_7g098090 56.890 566 190 6 9 521 15 579 0.0 636
MsG0180001746.01.T01 MTR_7g098180 54.417 566 208 5 2 518 6 570 0.0 622
MsG0180001746.01.T01 MTR_7g098220 56.007 566 200 5 1 518 4 568 0.0 620
MsG0180001746.01.T01 MTR_7g098230 55.307 537 191 5 34 522 33 568 0.0 615
MsG0180001746.01.T01 MTR_7g098220 55.429 525 185 5 42 518 1 524 0.0 564
MsG0180001746.01.T01 MTR_3g072300 46.207 580 258 5 9 538 6 581 3.11e-177 512
MsG0180001746.01.T01 MTR_7g098200 52.391 460 170 5 113 524 1 459 1.07e-170 492
MsG0180001746.01.T01 MTR_7g098150 53.913 460 163 5 8 419 14 472 2.70e-170 491
MsG0180001746.01.T01 MTR_7g098210 48.984 492 190 9 46 522 1 446 7.67e-155 450
MsG0180001746.01.T01 MTR_3g462710 41.463 574 275 9 1 521 1 566 2.24e-148 438
MsG0180001746.01.T01 MTR_7g067010 40.564 567 279 7 10 524 7 567 3.82e-145 430
MsG0180001746.01.T01 MTR_4g015080 39.572 561 281 7 10 518 17 571 3.19e-137 410
MsG0180001746.01.T01 MTR_7g065080 38.821 577 276 11 9 526 13 571 1.48e-131 395
MsG0180001746.01.T01 MTR_3g005010 37.390 567 274 8 3 518 7 543 1.23e-122 371
MsG0180001746.01.T01 MTR_4g019580 36.299 562 296 10 9 518 18 569 7.33e-122 371
MsG0180001746.01.T01 MTR_4g033310 40.551 508 263 8 13 518 17 487 2.91e-119 361
MsG0180001746.01.T01 MTR_4g033325 38.489 556 269 9 13 518 17 549 1.12e-118 361
MsG0180001746.01.T01 MTR_4g033315 38.559 555 270 10 13 517 17 550 1.13e-117 359
MsG0180001746.01.T01 MTR_4g033310 38.559 555 270 10 13 517 17 550 1.13e-117 359
MsG0180001746.01.T01 MTR_3g069500 35.943 562 292 8 9 519 17 561 1.12e-116 357
MsG0180001746.01.T01 MTR_3g069420 35.544 588 312 12 9 538 16 594 5.82e-116 355
MsG0180001746.01.T01 MTR_5g012270 36.411 574 300 10 17 534 19 583 1.83e-115 354
MsG0180001746.01.T01 MTR_3g112450 36.462 554 292 9 7 510 3 546 1.69e-114 351
MsG0180001746.01.T01 MTR_0294s0020 37.882 557 273 10 11 517 15 548 1.87e-114 350
MsG0180001746.01.T01 MTR_3g112460 36.185 561 290 11 1 510 1 544 6.39e-114 350
MsG0180001746.01.T01 MTR_3g112470 36.494 559 291 10 8 515 4 549 1.50e-113 348
MsG0180001746.01.T01 MTR_4g101380 36.189 572 300 8 17 531 17 580 3.81e-111 343
MsG0180001746.01.T01 MTR_3g069440 36.607 560 293 10 13 519 19 569 6.32e-111 342
MsG0180001746.01.T01 MTR_4g098800 33.808 562 310 6 9 515 18 572 2.50e-109 338
MsG0180001746.01.T01 MTR_4g098800 33.808 562 310 6 9 515 83 637 1.79e-108 338
MsG0180001746.01.T01 MTR_4g033330 37.918 538 263 9 13 500 17 533 6.17e-108 333
MsG0180001746.01.T01 MTR_7g065080 38.523 501 231 11 85 526 2 484 4.69e-107 329
MsG0180001746.01.T01 MTR_5g055000 34.358 553 308 7 19 518 10 560 5.60e-107 332
MsG0180001746.01.T01 MTR_5g014150 32.740 562 321 6 9 515 26 585 1.26e-106 332
MsG0180001746.01.T01 MTR_5g012290 35.556 585 315 8 11 536 7 588 5.09e-106 330
MsG0180001746.01.T01 MTR_4g033375 37.177 503 242 9 13 463 18 498 2.90e-104 322
MsG0180001746.01.T01 MTR_5g085850 34.760 584 300 10 12 533 15 579 4.97e-104 325
MsG0180001746.01.T01 MTR_4g114340 36.185 561 292 8 10 515 7 556 6.01e-104 324
MsG0180001746.01.T01 MTR_8g038880 35.125 558 281 9 26 523 19 555 5.75e-103 321
MsG0180001746.01.T01 MTR_4g033395 37.325 501 244 9 13 463 18 498 1.34e-102 318
MsG0180001746.01.T01 MTR_7g088825 32.870 575 322 12 25 540 20 589 2.18e-102 321
MsG0180001746.01.T01 MTR_7g010820 34.011 541 297 8 11 494 10 547 2.07e-101 318
MsG0180001746.01.T01 MTR_3g462710 38.312 462 227 8 113 521 1 457 2.93e-99 308
MsG0180001746.01.T01 MTR_7g005930 31.598 557 323 7 25 531 34 582 1.20e-98 310
MsG0180001746.01.T01 MTR_7g088820 32.682 563 317 10 12 518 12 568 2.50e-98 310
MsG0180001746.01.T01 MTR_3g014790 34.326 571 282 11 13 518 5 547 1.03e-97 307
MsG0180001746.01.T01 MTR_7g013270 31.533 574 334 6 18 539 81 647 8.44e-97 307
MsG0180001746.01.T01 MTR_1g116930 31.979 566 321 9 25 539 21 573 1.10e-96 305
MsG0180001746.01.T01 MTR_2g017750 32.867 572 320 9 13 520 19 590 2.95e-96 305
MsG0180001746.01.T01 MTR_7g088790 31.399 586 332 10 16 540 18 594 9.27e-96 304
MsG0180001746.01.T01 MTR_3g100980 33.394 548 308 7 21 518 10 550 5.90e-94 298
MsG0180001746.01.T01 MTR_7g006540 32.923 568 314 10 16 520 51 614 2.77e-93 298
MsG0180001746.01.T01 MTR_8g469480 32.545 550 310 8 31 522 42 588 4.30e-93 296
MsG0180001746.01.T01 MTR_5g038060 32.218 568 326 7 25 535 29 594 3.60e-92 294
MsG0180001746.01.T01 MTR_2g005130 32.343 572 319 9 1 522 14 567 1.73e-91 292
MsG0180001746.01.T01 MTR_4g024930 31.115 556 327 10 2 515 11 552 1.98e-88 283
MsG0180001746.01.T01 MTR_7g088820 32.742 507 281 9 68 518 4 506 2.43e-88 282
MsG0180001746.01.T01 MTR_3g100980 31.579 589 314 9 21 527 10 591 8.07e-88 283
MsG0180001746.01.T01 MTR_4g107670 31.678 584 324 12 1 520 1 573 8.55e-87 279
MsG0180001746.01.T01 MTR_8g469310 30.986 568 322 9 14 519 13 572 9.57e-87 279
MsG0180001746.01.T01 MTR_4g033325 35.886 457 220 9 112 518 18 451 1.16e-84 270
MsG0180001746.01.T01 MTR_1g085090 30.420 572 329 10 13 530 3 559 1.19e-84 275
MsG0180001746.01.T01 MTR_7g111260 31.359 574 328 11 12 534 4 562 2.69e-83 270
MsG0180001746.01.T01 MTR_5g038380 30.503 577 331 10 7 520 7 576 5.41e-83 270
MsG0180001746.01.T01 MTR_4g033325 35.714 434 216 8 135 518 5 425 7.51e-82 262
MsG0180001746.01.T01 MTR_4g033385 35.011 457 227 9 112 518 16 452 7.90e-82 263
MsG0180001746.01.T01 MTR_4g107510 29.982 547 322 8 31 518 40 584 5.44e-78 257
MsG0180001746.01.T01 MTR_8g087810 31.359 574 325 11 13 520 7 577 1.82e-76 252
MsG0180001746.01.T01 MTR_4g107580 29.307 563 338 6 31 534 28 589 2.72e-76 252
MsG0180001746.01.T01 MTR_4g107530 29.593 615 339 11 6 538 2 604 5.07e-76 252
MsG0180001746.01.T01 MTR_7g088820 32.251 462 253 9 113 518 1 458 2.78e-75 246
MsG0180001746.01.T01 MTR_8g087780 31.065 573 327 11 13 520 7 576 5.22e-75 248
MsG0180001746.01.T01 MTR_4g123537 30.035 566 334 9 17 532 31 584 1.24e-74 248
MsG0180001746.01.T01 MTR_1g026740 30.074 542 317 10 29 515 19 553 3.78e-74 246
MsG0180001746.01.T01 MTR_7g064780 28.912 588 353 9 8 536 7 588 3.46e-73 244
MsG0180001746.01.T01 MTR_4g107610 28.689 610 357 13 1 540 1 602 2.03e-70 237
MsG0180001746.01.T01 MTR_8g469470 26.855 566 344 10 18 519 23 582 6.34e-69 233
MsG0180001746.01.T01 MTR_1g009200 29.401 551 318 10 25 515 25 564 1.64e-67 229
MsG0180001746.01.T01 MTR_2g101640 28.799 566 325 15 36 537 32 583 7.67e-66 225
MsG0180001746.01.T01 MTR_2g101590 29.912 565 320 15 36 536 35 587 3.32e-65 224
MsG0180001746.01.T01 MTR_5g038190 27.679 560 340 8 18 518 15 568 5.86e-65 221
MsG0180001746.01.T01 MTR_1g026750 29.107 560 333 12 13 515 2 554 8.52e-65 221
MsG0180001746.01.T01 MTR_2g101650 26.776 549 337 11 25 515 22 563 2.30e-63 218
MsG0180001746.01.T01 MTR_7g052600 30.018 553 309 8 8 515 6 525 9.40e-63 214
MsG0180001746.01.T01 MTR_7g064800 29.583 551 325 9 25 516 24 570 2.85e-62 215
MsG0180001746.01.T01 MTR_2g101610 29.027 565 325 14 36 536 36 588 3.59e-61 213
MsG0180001746.01.T01 MTR_7g051830 30.144 554 309 8 7 515 5 525 2.17e-60 208
MsG0180001746.01.T01 MTR_2g101560 29.338 559 317 14 36 531 36 579 4.16e-59 207
MsG0180001746.01.T01 MTR_4g011280 26.307 574 347 13 21 532 27 586 6.54e-59 206
MsG0180001746.01.T01 MTR_7g051880 29.570 558 307 8 7 515 5 525 8.52e-59 204
MsG0180001746.01.T01 MTR_8g103233 32.682 358 220 6 191 538 226 572 1.71e-57 202
MsG0180001746.01.T01 MTR_8g103233 29.221 154 107 1 24 177 14 165 5.41e-18 87.8
MsG0180001746.01.T01 MTR_2g093160 24.733 562 351 9 13 518 2 547 1.56e-55 196
MsG0180001746.01.T01 MTR_2g093640 25.528 568 339 10 13 518 2 547 1.36e-53 190
MsG0180001746.01.T01 MTR_6g008690 34.557 327 189 8 205 524 233 541 2.96e-53 189
MsG0180001746.01.T01 MTR_2g093180 25.618 566 342 11 13 518 2 548 7.01e-52 186
MsG0180001746.01.T01 MTR_1g057460 26.667 540 308 14 36 515 53 564 2.27e-47 174
MsG0180001746.01.T01 MTR_1g026770 31.642 335 215 7 191 515 220 550 1.10e-46 172
MsG0180001746.01.T01 MTR_1g026770 34.228 149 95 2 29 177 17 162 3.85e-17 85.1
MsG0180001746.01.T01 MTR_1g057460 26.488 521 295 14 55 515 1 493 1.82e-44 164
MsG0180001746.01.T01 MTR_0236s0050 25.918 490 277 13 85 515 31 493 3.83e-40 152
MsG0180001746.01.T01 MTR_3g065350 33.962 159 99 1 287 445 1 153 2.92e-24 99.8
MsG0180001746.01.T01 MTR_1g009170 28.435 313 163 9 191 494 94 354 1.21e-23 103
MsG0180001746.01.T01 MTR_4g033390 42.857 91 52 0 433 523 30 120 3.23e-21 89.7
MsG0180001746.01.T01 MTR_7g098080 59.184 49 17 1 32 77 13 61 1.28e-12 63.2
MsG0180001746.01.T01 MTR_7g498330 53.061 49 20 2 2 50 6 51 7.79e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001746.01.T01 AT5G46050 59.862 578 182 7 5 534 5 580 0.0 662
MsG0180001746.01.T01 AT5G46040 58.435 575 187 6 6 531 6 577 0.0 636
MsG0180001746.01.T01 AT5G46050 57.872 470 148 7 113 534 1 468 4.42e-177 508
MsG0180001746.01.T01 AT2G40460 47.535 568 239 8 1 520 1 557 1.27e-174 506
MsG0180001746.01.T01 AT2G02040 41.682 559 268 5 1 504 12 567 2.21e-157 461
MsG0180001746.01.T01 AT3G54140 41.289 574 276 9 1 521 1 566 5.73e-151 445
MsG0180001746.01.T01 AT3G54140 41.289 574 276 9 1 521 1 566 5.73e-151 445
MsG0180001746.01.T01 AT1G62200 40.364 550 268 4 7 504 32 573 1.51e-143 426
MsG0180001746.01.T01 AT5G01180 39.826 575 277 8 1 518 1 563 4.69e-142 422
MsG0180001746.01.T01 AT5G01180 39.826 575 277 8 1 518 1 563 4.69e-142 422
MsG0180001746.01.T01 AT5G01180 39.826 575 277 8 1 518 1 563 4.69e-142 422
MsG0180001746.01.T01 AT1G62200 38.515 579 267 5 7 504 46 616 1.19e-137 413
MsG0180001746.01.T01 AT1G62200 38.515 579 267 5 7 504 32 602 1.62e-137 412
MsG0180001746.01.T01 AT2G02020 38.624 567 261 7 1 517 13 542 1.02e-132 397
MsG0180001746.01.T01 AT3G53960 38.394 573 287 11 13 530 23 584 5.68e-126 382
MsG0180001746.01.T01 AT2G37900 35.242 559 295 8 13 519 24 567 1.29e-116 357
MsG0180001746.01.T01 AT3G54450 37.050 556 269 9 23 518 8 542 3.38e-116 355
MsG0180001746.01.T01 AT1G12110 35.517 580 306 9 17 538 17 586 4.31e-111 343
MsG0180001746.01.T01 AT2G02020 35.450 567 258 9 1 517 13 521 8.31e-111 340
MsG0180001746.01.T01 AT1G32450 34.281 598 324 10 9 539 19 614 2.81e-108 336
MsG0180001746.01.T01 AT1G22540 35.612 556 285 11 15 518 18 552 2.94e-107 332
MsG0180001746.01.T01 AT1G72140 33.972 574 294 10 2 519 9 553 1.87e-106 330
MsG0180001746.01.T01 AT1G22550 35.789 570 297 11 2 518 6 559 4.78e-103 321
MsG0180001746.01.T01 AT2G26690 35.009 557 293 8 10 510 7 550 2.66e-102 320
MsG0180001746.01.T01 AT1G68570 35.484 558 300 9 17 518 15 568 6.12e-102 319
MsG0180001746.01.T01 AT1G68570 36.142 534 283 8 41 518 7 538 1.06e-101 318
MsG0180001746.01.T01 AT4G21680 33.040 569 311 6 11 517 12 572 3.09e-100 315
MsG0180001746.01.T01 AT1G22570 36.888 572 289 12 2 518 6 560 1.10e-98 310
MsG0180001746.01.T01 AT1G59740 32.522 575 328 8 9 531 23 589 1.71e-98 310
MsG0180001746.01.T01 AT2G37900 35.271 499 256 8 73 519 5 488 3.23e-98 306
MsG0180001746.01.T01 AT5G19640 31.588 573 330 7 2 526 34 592 2.42e-96 305
MsG0180001746.01.T01 AT3G21670 33.613 595 311 10 8 537 7 582 3.60e-95 301
MsG0180001746.01.T01 AT1G72130 31.204 548 288 9 23 517 21 532 7.05e-95 299
MsG0180001746.01.T01 AT2G26690 34.791 526 274 8 41 510 5 517 1.36e-94 299
MsG0180001746.01.T01 AT5G13400 32.986 576 313 9 16 526 52 619 7.18e-93 296
MsG0180001746.01.T01 AT1G72125 34.698 562 298 10 9 518 12 556 1.48e-92 294
MsG0180001746.01.T01 AT1G72120 35.018 554 303 11 9 518 12 552 2.45e-92 293
MsG0180001746.01.T01 AT2G26690 34.623 517 269 8 50 510 2 505 9.31e-92 291
MsG0180001746.01.T01 AT1G33440 32.198 587 330 11 9 537 20 596 4.54e-91 291
MsG0180001746.01.T01 AT1G22570 37.148 533 264 11 41 518 7 523 2.11e-90 287
MsG0180001746.01.T01 AT1G69870 32.369 553 310 9 24 518 48 594 4.31e-85 276
MsG0180001746.01.T01 AT1G69850 30.068 592 339 8 1 524 1 585 3.23e-84 273
MsG0180001746.01.T01 AT1G27040 30.254 552 334 5 13 517 13 560 6.46e-82 266
MsG0180001746.01.T01 AT1G27040 30.254 552 334 5 13 517 9 556 7.08e-82 266
MsG0180001746.01.T01 AT3G16180 29.391 558 323 10 21 515 16 565 1.24e-78 258
MsG0180001746.01.T01 AT1G27040 30.320 531 319 5 34 517 2 528 4.24e-78 255
MsG0180001746.01.T01 AT1G18880 30.728 563 323 9 31 530 23 581 1.62e-77 255
MsG0180001746.01.T01 AT1G52190 28.413 542 321 9 36 515 30 566 7.04e-77 254
MsG0180001746.01.T01 AT1G27080 30.303 561 320 11 21 523 8 555 2.67e-69 233
MsG0180001746.01.T01 AT3G47960 30.809 581 320 14 31 538 65 636 3.25e-69 234
MsG0180001746.01.T01 AT5G62680 29.783 554 319 9 31 520 47 594 7.73e-69 233
MsG0180001746.01.T01 AT3G25260 31.136 546 288 13 17 515 11 515 1.46e-68 229
MsG0180001746.01.T01 AT5G14940 28.014 564 319 10 25 523 5 546 4.45e-68 229
MsG0180001746.01.T01 AT5G62730 27.568 584 331 11 1 520 32 587 6.83e-68 230
MsG0180001746.01.T01 AT1G72130 29.493 434 228 7 137 517 6 414 1.61e-66 221
MsG0180001746.01.T01 AT1G72130 29.493 434 228 7 137 517 6 414 1.61e-66 221
MsG0180001746.01.T01 AT3G25280 29.487 546 303 10 17 515 11 521 9.35e-66 223
MsG0180001746.01.T01 AT5G28470 28.801 559 314 12 23 515 13 553 3.73e-64 219
MsG0180001746.01.T01 AT1G69860 30.755 543 306 10 31 518 22 549 7.79e-64 218
MsG0180001746.01.T01 AT3G45650 27.352 574 349 8 6 530 1 555 1.22e-63 218
MsG0180001746.01.T01 AT5G62730 27.536 552 310 10 33 520 3 528 6.87e-63 215
MsG0180001746.01.T01 AT5G28470 28.623 559 313 13 23 515 13 551 2.15e-61 212
MsG0180001746.01.T01 AT3G45660 28.872 523 302 10 46 518 40 542 2.96e-61 211
MsG0180001746.01.T01 AT3G45660 28.872 523 302 10 46 518 40 542 2.96e-61 211
MsG0180001746.01.T01 AT1G27080 30.228 526 296 11 56 523 1 513 3.93e-61 210
MsG0180001746.01.T01 AT3G45660 28.872 523 302 10 46 518 61 563 5.23e-61 211
MsG0180001746.01.T01 AT3G45710 28.309 544 318 12 27 518 21 544 5.37e-60 208
MsG0180001746.01.T01 AT3G45700 27.778 558 333 14 26 537 15 548 2.05e-59 206
MsG0180001746.01.T01 AT3G45680 27.788 565 333 13 6 518 1 542 1.08e-58 204
MsG0180001746.01.T01 AT3G45650 26.167 600 349 9 6 530 1 581 2.49e-58 204
MsG0180001746.01.T01 AT3G45720 28.355 529 303 14 49 524 41 546 2.56e-58 203
MsG0180001746.01.T01 AT5G11570 28.911 505 327 10 13 515 2 476 5.16e-57 198
MsG0180001746.01.T01 AT3G45690 25.885 537 300 13 26 518 17 499 2.14e-47 173
MsG0180001746.01.T01 AT3G01350 32.344 337 207 7 198 523 230 556 1.70e-45 168
MsG0180001746.01.T01 AT3G01350 28.485 165 104 2 24 187 3 154 3.84e-14 75.5
MsG0180001746.01.T01 AT2G38100 24.470 519 298 13 55 515 2 484 1.65e-32 130
MsG0180001746.01.T01 AT2G38100 24.470 519 298 13 55 515 18 500 3.35e-32 130
MsG0180001746.01.T01 AT2G38100 24.470 519 298 13 55 515 24 506 3.91e-32 130

Find 120 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGGCTCTTCATGCTTTC+TGG 0.063758 1:-26366766 None:intergenic
TCACAAATAGTGTATTTATT+TGG 0.082899 1:-26366357 None:intergenic
GCTAAGAATGATCCCAATTT+TGG 0.155064 1:+26366303 MsG0180001746.01.T01:CDS
ATTAATGTTGTAGCCAAAAT+TGG 0.160947 1:-26366316 None:intergenic
TCTAGCTCATAAAGTTCTTT+AGG 0.183580 1:-26365818 None:intergenic
ATTTGGATCACTCCAATATT+TGG 0.189156 1:+26364920 MsG0180001746.01.T01:CDS
CTAAACTTGCTGGTGGAATT+TGG 0.189281 1:-26366417 None:intergenic
GCTTCCACAATTTATACTTA+TGG 0.193391 1:+26366687 MsG0180001746.01.T01:CDS
ATGCCTACCTTGGCCGTTAT+TGG 0.208665 1:+26364957 MsG0180001746.01.T01:CDS
TTTGAGAGAATGGCTTATTA+TGG 0.210968 1:+26364806 MsG0180001746.01.T01:CDS
GATGGAACTGTTGATCTTAA+AGG 0.218915 1:+26363493 MsG0180001746.01.T01:CDS
CACAAATAGTGTATTTATTT+GGG 0.263023 1:-26366356 None:intergenic
CTTCCACAATTTATACTTAT+GGG 0.263608 1:+26366688 MsG0180001746.01.T01:CDS
CTAGCTCATAAAGTTCTTTA+GGG 0.280888 1:-26365817 None:intergenic
GCAACATAAGCACCAAATAT+TGG 0.300602 1:-26364932 None:intergenic
GATAATCCATATAATGATTA+TGG 0.303764 1:+26366567 MsG0180001746.01.T01:CDS
AAACATGGAGTAGTTGAAAA+TGG 0.308444 1:+26366634 MsG0180001746.01.T01:CDS
CAAATTCCACCAGCAAGTTT+AGG 0.314008 1:+26366418 MsG0180001746.01.T01:CDS
CAACTACCATAATCATTATA+TGG 0.316829 1:-26366573 None:intergenic
AGAACTTTATGAGCTAGATT+TGG 0.318719 1:+26365823 MsG0180001746.01.T01:CDS
TGCCTCTTTCATCTATCTAT+TGG 0.320384 1:+26364991 MsG0180001746.01.T01:CDS
AGGGAGTCCCTTCACTAAAA+TGG 0.333057 1:+26365742 MsG0180001746.01.T01:CDS
GATCATTCTTAGCATTTGTT+TGG 0.334101 1:-26366293 None:intergenic
AGCTTTCCAACAACCAGTTT+TGG 0.334652 1:-26363533 None:intergenic
AAGGCTAACATTTCCACTAT+TGG 0.346632 1:+26365490 MsG0180001746.01.T01:CDS
CAACTTTCACCGAAAGATAT+AGG 0.351546 1:+26366596 MsG0180001746.01.T01:CDS
TTGAGAGAATGGCTTATTAT+GGG 0.354991 1:+26364807 MsG0180001746.01.T01:CDS
CCAATTGGGCTGGCACCATT+TGG 0.365729 1:+26364903 MsG0180001746.01.T01:CDS
CCTATTCTCAAATCCAAAAC+TGG 0.369861 1:+26363520 MsG0180001746.01.T01:CDS
GTTTCCTCTACATGTGTAAC+GGG 0.373159 1:-26366271 None:intergenic
ATAAACTCTCATTCTTCAAT+TGG 0.378779 1:+26365553 MsG0180001746.01.T01:CDS
AAAGCTTGTTCCTTCTTTGT+TGG 0.383274 1:+26363550 MsG0180001746.01.T01:CDS
CTTCTACCAATGTCACCAAT+TGG 0.386501 1:+26364888 MsG0180001746.01.T01:CDS
TCTTTAGGGTCACTAGGAAT+AGG 0.396153 1:-26365803 None:intergenic
TCAAGACTAATTCAAGTACT+AGG 0.403106 1:+26366233 MsG0180001746.01.T01:CDS
ATTTGGGCAACCATTGTACT+AGG 0.403986 1:-26366340 None:intergenic
ATGGAACTGTTGATCTTAAA+GGG 0.414186 1:+26363494 MsG0180001746.01.T01:CDS
TACACTAAGCCTATATCTTT+CGG 0.422302 1:-26366605 None:intergenic
TCAAATCCAAAACTGGTTGT+TGG 0.426483 1:+26363527 MsG0180001746.01.T01:CDS
CCAAATGGTGCCAGCCCAAT+TGG 0.433251 1:-26364903 None:intergenic
TTGTCAAGATTATGCAAAGA+TGG 0.435607 1:+26366494 MsG0180001746.01.T01:CDS
TTACAGCTAGTAGTGTTCTA+TGG 0.437692 1:+26365430 MsG0180001746.01.T01:CDS
TTAATGTTGTAGCCAAAATT+GGG 0.446630 1:-26366315 None:intergenic
ACCACCTGAGTGCCATGAAA+TGG 0.447146 1:+26365378 MsG0180001746.01.T01:CDS
TCTTATTCATTGACTAGTTT+AGG 0.448411 1:+26366793 MsG0180001746.01.T01:CDS
TTCTACCAATGTCACCAATT+GGG 0.449794 1:+26364889 MsG0180001746.01.T01:CDS
GTATGAGGTATTTGAGAGAA+TGG 0.453573 1:+26364796 MsG0180001746.01.T01:CDS
TACACTCTAGCAGTGGGAAC+AGG 0.454620 1:+26365460 MsG0180001746.01.T01:CDS
TTGTGGCTGCAATAAAGAAA+TGG 0.455103 1:+26365774 MsG0180001746.01.T01:CDS
TATTCAAAATCCAACCTTTG+TGG 0.457366 1:-26366879 None:intergenic
AGCAAAATGAATATGCTCAA+TGG 0.469181 1:-26366667 None:intergenic
AGTGCTTGCAGAAGAATTGA+AGG 0.472723 1:+26367029 MsG0180001746.01.T01:CDS
TGAAGTAGAGTAATTCCTCT+AGG 0.480380 1:-26366526 None:intergenic
AAATTGATCAGCACCAATAG+TGG 0.481419 1:-26365503 None:intergenic
TATAGACATAAATTACCTAC+AGG 0.484000 1:+26365722 MsG0180001746.01.T01:CDS
GGTTTCCTCTACATGTGTAA+CGG 0.492002 1:-26366272 None:intergenic
ACTAATTCAAGTACTAGGGC+AGG 0.492384 1:+26366238 MsG0180001746.01.T01:CDS
GTTTAGCATGGAAGAGGGAA+GGG 0.493380 1:+26363450 None:intergenic
TTGGAAGAGTATGCAAAGAA+AGG 0.496611 1:+26365842 MsG0180001746.01.T01:CDS
ACAAATGTACCTAAACTTGC+TGG 0.498006 1:-26366427 None:intergenic
AGGAACATGGCCACAAAGGT+TGG 0.500146 1:+26366869 MsG0180001746.01.T01:CDS
ACAACACTTGATAGAGGCAT+TGG 0.500358 1:+26366388 MsG0180001746.01.T01:CDS
TATGTTGCTGATGCCTACCT+TGG 0.501210 1:+26364947 MsG0180001746.01.T01:CDS
TCATTGACTAGTTTAGGCAT+TGG 0.506968 1:+26366799 MsG0180001746.01.T01:CDS
TTGACAAATAAGCTTCATCA+AGG 0.509405 1:+26364854 MsG0180001746.01.T01:CDS
AGTTTAGCATGGAAGAGGGA+AGG 0.509592 1:+26363449 None:intergenic
GAAGTAGAGTAATTCCTCTA+GGG 0.517835 1:-26366525 None:intergenic
AATTACTCTACTTCAAAGGA+TGG 0.519882 1:+26366534 MsG0180001746.01.T01:CDS
AACATTAATTCCTAGTACAA+TGG 0.525359 1:+26366330 MsG0180001746.01.T01:CDS
AAAAGAGTTTAGCATGGAAG+AGG 0.525640 1:+26363444 None:intergenic
AAAGAGTTTAGCATGGAAGA+GGG 0.525938 1:+26363445 None:intergenic
CTTATACCTCAATGTGGGAG+TGG 0.531336 1:-26365882 None:intergenic
ACCAATGTCACCAATTGGGC+TGG 0.533735 1:+26364893 MsG0180001746.01.T01:CDS
CCAGAAAGCATGAAGAGCCT+TGG 0.535515 1:+26366766 MsG0180001746.01.T01:CDS
TAAAGTTCTTTAGGGTCACT+AGG 0.537579 1:-26365809 None:intergenic
GGTAATTTATGTCTATAGAA+TGG 0.537810 1:-26365716 None:intergenic
TCCCTTCACTAAAATGGCTA+AGG 0.542023 1:+26365748 MsG0180001746.01.T01:CDS
CAACACTTGATAGAGGCATT+GGG 0.555650 1:+26366389 MsG0180001746.01.T01:CDS
TTGATTCCACTCCCACATTG+AGG 0.555903 1:+26365876 MsG0180001746.01.T01:CDS
GTGAGTGAGTTCACACAAGA+TGG 0.557751 1:+26363475 MsG0180001746.01.T01:CDS
AAATATTGGAGTGATCCAAA+TGG 0.561161 1:-26364918 None:intergenic
CAAGACTAATTCAAGTACTA+GGG 0.562608 1:+26366234 MsG0180001746.01.T01:CDS
AAATGGCATACCAACAAAGA+AGG 0.567725 1:-26363560 None:intergenic
TATCTGTAATGCAGTGTATG+AGG 0.573215 1:+26364781 MsG0180001746.01.T01:intron
GAGGAATTACTCTACTTCAA+AGG 0.573580 1:+26366530 MsG0180001746.01.T01:CDS
AGTAGTTGAAAATGGAGGAA+TGG 0.575251 1:+26366642 MsG0180001746.01.T01:CDS
AATGTACCTAAACTTGCTGG+TGG 0.578804 1:-26366424 None:intergenic
ACATCCATTTCATGGCACTC+AGG 0.580049 1:-26365382 None:intergenic
TCTTGACACATGCCTTGTTG+AGG 0.581565 1:-26366216 None:intergenic
CAGTGACAAAAGTCCAATAA+CGG 0.581970 1:-26364970 None:intergenic
TCCATTTCATGGCACTCAGG+TGG 0.582921 1:-26365379 None:intergenic
TACCAATAGATAGATGAAAG+AGG 0.584085 1:-26364993 None:intergenic
ACTCTAGCAGTGGGAACAGG+TGG 0.584584 1:+26365463 MsG0180001746.01.T01:CDS
GCCAGCCCAATTGGTGACAT+TGG 0.595613 1:-26364894 None:intergenic
CAAGGAACAACACTTGATAG+AGG 0.596087 1:+26366382 MsG0180001746.01.T01:CDS
CTACTTCAAAGGATGGGCAT+AGG 0.596667 1:+26366541 MsG0180001746.01.T01:CDS
AATACACTATTTGTGAAGCA+AGG 0.599414 1:+26366364 MsG0180001746.01.T01:CDS
GTTCCCATAAGTATAAATTG+TGG 0.600139 1:-26366691 None:intergenic
CAAAAGTCCAATAACGGCCA+AGG 0.601482 1:-26364964 None:intergenic
CTAATTCAAGTACTAGGGCA+GGG 0.602907 1:+26366239 MsG0180001746.01.T01:CDS
AGTCCAATAACGGCCAAGGT+AGG 0.605681 1:-26364960 None:intergenic
CATGGAGTAGTTGAAAATGG+AGG 0.609179 1:+26366637 MsG0180001746.01.T01:CDS
AACAGCTGAAGCATTTGTAG+AGG 0.611071 1:+26366711 MsG0180001746.01.T01:CDS
TAAAATGGCTAAGGTCATTG+TGG 0.611474 1:+26365757 MsG0180001746.01.T01:CDS
TGCACTCTACACTCTAGCAG+TGG 0.617254 1:+26365453 MsG0180001746.01.T01:CDS
TCAATGAATAAGAAGTGCCA+AGG 0.619541 1:-26366783 None:intergenic
TTAGTGAAGGGACTCCCTGT+AGG 0.619933 1:-26365737 None:intergenic
ACTGAGGAACATGGCCACAA+AGG 0.621157 1:+26366865 MsG0180001746.01.T01:CDS
GAACACTACTAGCTGTAATG+TGG 0.621214 1:-26365425 None:intergenic
GCACTCTACACTCTAGCAGT+GGG 0.622029 1:+26365454 MsG0180001746.01.T01:CDS
TCACACATCACTGAGGAACA+TGG 0.624089 1:+26366856 MsG0180001746.01.T01:CDS
ATTACTCTACTTCAAAGGAT+GGG 0.624734 1:+26366535 MsG0180001746.01.T01:CDS
TATATGCAGGTTCCTCAACA+AGG 0.627210 1:+26366204 MsG0180001746.01.T01:intron
AGTGGGAACAGGTGGAACAA+AGG 0.632065 1:+26365471 MsG0180001746.01.T01:CDS
GTGCCCCGTTACACATGTAG+AGG 0.635759 1:+26366267 MsG0180001746.01.T01:CDS
AGGAACTTATACCTCAATGT+GGG 0.652589 1:-26365887 None:intergenic
AAGGAACTTATACCTCAATG+TGG 0.668154 1:-26365888 None:intergenic
TTTCCTCTACATGTGTAACG+GGG 0.708473 1:-26366270 None:intergenic
ATAGACATAAATTACCTACA+GGG 0.718820 1:+26365723 MsG0180001746.01.T01:CDS
AACAGTTTCACACATCACTG+AGG 0.750967 1:+26366849 MsG0180001746.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACTTGATAATAAAATT+TGG - Chr1:26364134-26364153 None:intergenic 10.0%
!!! ATTTTTAGAATAATAAGTTT+TGG + Chr1:26365117-26365136 MsG0180001746.01.T01:intron 10.0%
!!! TCTTTTTTTTTATTTTCTTT+CGG - Chr1:26364522-26364541 None:intergenic 10.0%
!! GAGATAAAAAAAATATTTGA+AGG - Chr1:26364159-26364178 None:intergenic 15.0%
!! TATATTAAATATTAAACTCG+AGG + Chr1:26365091-26365110 MsG0180001746.01.T01:intron 15.0%
!! TGTAAAAAAAATATATATGC+AGG + Chr1:26366191-26366210 MsG0180001746.01.T01:intron 15.0%
!!! CATTGTTATAATTTGAATTT+TGG + Chr1:26366168-26366187 MsG0180001746.01.T01:intron 15.0%
!!! GAATATCTATCATTATATTT+TGG + Chr1:26365685-26365704 MsG0180001746.01.T01:intron 15.0%
!!! TAAAAATGGTTTTTTAACAA+TGG + Chr1:26363658-26363677 MsG0180001746.01.T01:intron 15.0%
!!! TATAGAGATATTTTTAATGT+TGG + Chr1:26365283-26365302 MsG0180001746.01.T01:intron 15.0%
!!! TATTTAATGAGTTTTAGTTA+AGG + Chr1:26366009-26366028 MsG0180001746.01.T01:intron 15.0%
!!! TTTTTTCTTGCTAAAAAAAA+TGG + Chr1:26364055-26364074 MsG0180001746.01.T01:intron 15.0%
!! CACAAATAGTGTATTTATTT+GGG - Chr1:26366359-26366378 None:intergenic 20.0%
!! CCATATTTAAATCGAAATTA+GGG - Chr1:26365930-26365949 None:intergenic 20.0%
!! GATAATCCATATAATGATTA+TGG + Chr1:26366567-26366586 MsG0180001746.01.T01:CDS 20.0%
!! TCACAAATAGTGTATTTATT+TGG - Chr1:26366360-26366379 None:intergenic 20.0%
!! TCACAATACTTCAAAAATAA+TGG + Chr1:26363958-26363977 MsG0180001746.01.T01:intron 20.0%
!! TCCATATTTAAATCGAAATT+AGG - Chr1:26365931-26365950 None:intergenic 20.0%
!! TGAAATTATGATTATCTTGT+AGG - Chr1:26364582-26364601 None:intergenic 20.0%
!! TTGTAAAAATACAAAAGAAG+AGG - Chr1:26366969-26366988 None:intergenic 20.0%
!!! AAACTTTTTCGCATAATAAT+CGG + Chr1:26365177-26365196 MsG0180001746.01.T01:intron 20.0%
!!! AACTTGATAATAAAATTTGG+AGG - Chr1:26364131-26364150 None:intergenic 20.0%
!!! ACTTGATAATAAAATTTGGA+GGG - Chr1:26364130-26364149 None:intergenic 20.0%
!!! ATCTATCATTATATTTTGGT+AGG + Chr1:26365689-26365708 MsG0180001746.01.T01:intron 20.0%
!!! ATGAGTTTACTTAAAAGTAT+GGG - Chr1:26364191-26364210 None:intergenic 20.0%
!!! TATTTTTAATGTTGGATCAA+TGG + Chr1:26365291-26365310 MsG0180001746.01.T01:intron 20.0%
!!! TGATTACTATTATGCATTTT+TGG + Chr1:26366921-26366940 MsG0180001746.01.T01:CDS 20.0%
!!! TTGCATTTTATGTAAAACAT+TGG + Chr1:26364691-26364710 MsG0180001746.01.T01:intron 20.0%
! AACATTAATTCCTAGTACAA+TGG + Chr1:26366330-26366349 MsG0180001746.01.T01:CDS 25.0%
! AAGTATGTAAAGTCTAGTTA+AGG - Chr1:26366082-26366101 None:intergenic 25.0%
! AATGAATGCTGTGTTAAAAA+TGG + Chr1:26363644-26363663 MsG0180001746.01.T01:intron 25.0%
! ACTATGCAGTGAATAATTAA+AGG + Chr1:26364278-26364297 MsG0180001746.01.T01:intron 25.0%
! ATAAACTCTCATTCTTCAAT+TGG + Chr1:26365553-26365572 MsG0180001746.01.T01:CDS 25.0%
! ATAGACATAAATTACCTACA+GGG + Chr1:26365723-26365742 MsG0180001746.01.T01:CDS 25.0%
! ATGAAGTTAACTAAATGTCA+TGG - Chr1:26364632-26364651 None:intergenic 25.0%
! ATTAATGTTGTAGCCAAAAT+TGG - Chr1:26366319-26366338 None:intergenic 25.0%
! CAACTACCATAATCATTATA+TGG - Chr1:26366576-26366595 None:intergenic 25.0%
! CAATTATAATGATATGAAGC+TGG - Chr1:26365034-26365053 None:intergenic 25.0%
! CATGAGTTTACTTAAAAGTA+TGG - Chr1:26364192-26364211 None:intergenic 25.0%
! CCCTAATTTCGATTTAAATA+TGG + Chr1:26365927-26365946 MsG0180001746.01.T01:intron 25.0%
! CTTCCACAATTTATACTTAT+GGG + Chr1:26366688-26366707 MsG0180001746.01.T01:CDS 25.0%
! GGAAAACATTCATTTAATCA+TGG - Chr1:26364611-26364630 None:intergenic 25.0%
! GGTAATTTATGTCTATAGAA+TGG - Chr1:26365719-26365738 None:intergenic 25.0%
! TATAGACATAAATTACCTAC+AGG + Chr1:26365722-26365741 MsG0180001746.01.T01:CDS 25.0%
! TGACATTTAGTTAACTTCAT+TGG + Chr1:26364632-26364651 MsG0180001746.01.T01:intron 25.0%
! TTAATGTTGTAGCCAAAATT+GGG - Chr1:26366318-26366337 None:intergenic 25.0%
! TTTATTAACATGTGCTTTCA+AGG - Chr1:26365258-26365277 None:intergenic 25.0%
!! TGAAATTTAAAACAGCTGTA+CGG - Chr1:26364098-26364117 None:intergenic 25.0%
!!! AGTTTTAGTAATATGGAGTT+TGG - Chr1:26365162-26365181 None:intergenic 25.0%
!!! GCGAAAAAGTTTTAGTAATA+TGG - Chr1:26365169-26365188 None:intergenic 25.0%
!!! TCTTATTCATTGACTAGTTT+AGG + Chr1:26366793-26366812 MsG0180001746.01.T01:CDS 25.0%
!!! TTTATTTTCTTTCGGTCTAT+AGG - Chr1:26364514-26364533 None:intergenic 25.0%
!!! TTTTTTAACAATGGAGTGAT+AGG + Chr1:26363667-26363686 MsG0180001746.01.T01:intron 25.0%
AAACATGGAGTAGTTGAAAA+TGG + Chr1:26366634-26366653 MsG0180001746.01.T01:CDS 30.0%
AAATATTGGAGTGATCCAAA+TGG - Chr1:26364921-26364940 None:intergenic 30.0%
AACTAGACTTTACATACTTC+AGG + Chr1:26366083-26366102 MsG0180001746.01.T01:intron 30.0%
AACTCAAGTTTGAATCTTGA+CGG + Chr1:26366049-26366068 MsG0180001746.01.T01:intron 30.0%
AATACACTATTTGTGAAGCA+AGG + Chr1:26366364-26366383 MsG0180001746.01.T01:CDS 30.0%
AATATTTGAGCTCAATCAAC+TGG - Chr1:26365993-26366012 None:intergenic 30.0%
AATTACTCTACTTCAAAGGA+TGG + Chr1:26366534-26366553 MsG0180001746.01.T01:CDS 30.0%
AGAACTTTATGAGCTAGATT+TGG + Chr1:26365823-26365842 MsG0180001746.01.T01:CDS 30.0%
AGCAAAATGAATATGCTCAA+TGG - Chr1:26366670-26366689 None:intergenic 30.0%
ATGGAACTGTTGATCTTAAA+GGG + Chr1:26363494-26363513 MsG0180001746.01.T01:CDS 30.0%
ATTACTCTACTTCAAAGGAT+GGG + Chr1:26366535-26366554 MsG0180001746.01.T01:CDS 30.0%
ATTTGGATCACTCCAATATT+TGG + Chr1:26364920-26364939 MsG0180001746.01.T01:CDS 30.0%
CAAGACTAATTCAAGTACTA+GGG + Chr1:26366234-26366253 MsG0180001746.01.T01:CDS 30.0%
CATAGTGAGATATGAGTTTA+AGG - Chr1:26364264-26364283 None:intergenic 30.0%
CTAGCTCATAAAGTTCTTTA+GGG - Chr1:26365820-26365839 None:intergenic 30.0%
GAATAAGTCTAGCAAATTTG+AGG - Chr1:26366147-26366166 None:intergenic 30.0%
GATCATTCTTAGCATTTGTT+TGG - Chr1:26366296-26366315 None:intergenic 30.0%
GCTTCCACAATTTATACTTA+TGG + Chr1:26366687-26366706 MsG0180001746.01.T01:CDS 30.0%
GTCTACATACAAGATAATGT+TGG + Chr1:26365624-26365643 MsG0180001746.01.T01:intron 30.0%
GTTCCCATAAGTATAAATTG+TGG - Chr1:26366694-26366713 None:intergenic 30.0%
TACACTAAGCCTATATCTTT+CGG - Chr1:26366608-26366627 None:intergenic 30.0%
TACCAATAGATAGATGAAAG+AGG - Chr1:26364996-26365015 None:intergenic 30.0%
TAGGGTTAGAATCTTGATAA+AGG - Chr1:26364444-26364463 None:intergenic 30.0%
TATTCAAAATCCAACCTTTG+TGG - Chr1:26366882-26366901 None:intergenic 30.0%
TCAAGACTAATTCAAGTACT+AGG + Chr1:26366233-26366252 MsG0180001746.01.T01:CDS 30.0%
TTAAATCGAAATTAGGGAAG+CGG - Chr1:26365924-26365943 None:intergenic 30.0%
TTGACAAATAAGCTTCATCA+AGG + Chr1:26364854-26364873 MsG0180001746.01.T01:CDS 30.0%
TTGAGAGAATGGCTTATTAT+GGG + Chr1:26364807-26364826 MsG0180001746.01.T01:CDS 30.0%
TTGTCAAGATTATGCAAAGA+TGG + Chr1:26366494-26366513 MsG0180001746.01.T01:CDS 30.0%
TTTGAGAGAATGGCTTATTA+TGG + Chr1:26364806-26364825 MsG0180001746.01.T01:CDS 30.0%
! ATAATGGAGTCAATTCTTGA+TGG + Chr1:26363974-26363993 MsG0180001746.01.T01:intron 30.0%
! ATTTTGTCACATCCATTTCA+TGG - Chr1:26365393-26365412 None:intergenic 30.0%
! TCTAGCTCATAAAGTTCTTT+AGG - Chr1:26365821-26365840 None:intergenic 30.0%
! TCTTTTTATACGCAACTACA+TGG - Chr1:26364009-26364028 None:intergenic 30.0%
!! ATAAGCATTGCTTTTGGATA+GGG + Chr1:26364215-26364234 MsG0180001746.01.T01:intron 30.0%
!! ATGTCTATAAGCATTGCTTT+TGG + Chr1:26364209-26364228 MsG0180001746.01.T01:intron 30.0%
!! TATAAGCATTGCTTTTGGAT+AGG + Chr1:26364214-26364233 MsG0180001746.01.T01:intron 30.0%
!! TCATGTCATATTTTAAGTCG+AGG - Chr1:26363770-26363789 None:intergenic 30.0%
!!! TTCAACTACTCCATGTTTTT+TGG - Chr1:26366632-26366651 None:intergenic 30.0%
AAATGGCATACCAACAAAGA+AGG - Chr1:26363563-26363582 None:intergenic 35.0%
AAATTGATCAGCACCAATAG+TGG - Chr1:26365506-26365525 None:intergenic 35.0%
AACTCTCATTCTTCAATTGG+TGG + Chr1:26365556-26365575 MsG0180001746.01.T01:intron 35.0%
AAGGAACTTATACCTCAATG+TGG - Chr1:26365891-26365910 None:intergenic 35.0%
AAGGCTAACATTTCCACTAT+TGG + Chr1:26365490-26365509 MsG0180001746.01.T01:CDS 35.0%
ACAAATGTACCTAAACTTGC+TGG - Chr1:26366430-26366449 None:intergenic 35.0%
ACATACAAGATAATGTTGGC+TGG + Chr1:26365628-26365647 MsG0180001746.01.T01:intron 35.0%
ACTCAAGTTTGAATCTTGAC+GGG + Chr1:26366050-26366069 MsG0180001746.01.T01:intron 35.0%
AGGAACTTATACCTCAATGT+GGG - Chr1:26365890-26365909 None:intergenic 35.0%
AGTAGTTGAAAATGGAGGAA+TGG + Chr1:26366642-26366661 MsG0180001746.01.T01:CDS 35.0%
CAACTTTCACCGAAAGATAT+AGG + Chr1:26366596-26366615 MsG0180001746.01.T01:CDS 35.0%
CAATGGTTCAAATGTGCAAT+TGG + Chr1:26365308-26365327 MsG0180001746.01.T01:intron 35.0%
CAGTGACAAAAGTCCAATAA+CGG - Chr1:26364973-26364992 None:intergenic 35.0%
CCAACAAGAATGCTTGTTTA+CGG + Chr1:26364032-26364051 MsG0180001746.01.T01:intron 35.0%
CCTATTCTCAAATCCAAAAC+TGG + Chr1:26363520-26363539 MsG0180001746.01.T01:CDS 35.0%
CTTAGTGTAGCCAAAAAACA+TGG + Chr1:26366619-26366638 MsG0180001746.01.T01:CDS 35.0%
GAAGTAGAGTAATTCCTCTA+GGG - Chr1:26366528-26366547 None:intergenic 35.0%
GAGGAATTACTCTACTTCAA+AGG + Chr1:26366530-26366549 MsG0180001746.01.T01:CDS 35.0%
GATGGAACTGTTGATCTTAA+AGG + Chr1:26363493-26363512 MsG0180001746.01.T01:CDS 35.0%
GCAACATAAGCACCAAATAT+TGG - Chr1:26364935-26364954 None:intergenic 35.0%
GTGAACGAGATCATAAAGTA+TGG - Chr1:26363942-26363961 None:intergenic 35.0%
TAAAATGGCTAAGGTCATTG+TGG + Chr1:26365757-26365776 MsG0180001746.01.T01:CDS 35.0%
TATCTGTAATGCAGTGTATG+AGG + Chr1:26364781-26364800 MsG0180001746.01.T01:intron 35.0%
TCAAATCCAAAACTGGTTGT+TGG + Chr1:26363527-26363546 MsG0180001746.01.T01:CDS 35.0%
TGAAGTAGAGTAATTCCTCT+AGG - Chr1:26366529-26366548 None:intergenic 35.0%
TGCCTCTTTCATCTATCTAT+TGG + Chr1:26364991-26365010 MsG0180001746.01.T01:CDS 35.0%
TTACAGCTAGTAGTGTTCTA+TGG + Chr1:26365430-26365449 MsG0180001746.01.T01:CDS 35.0%
TTCTACCAATGTCACCAATT+GGG + Chr1:26364889-26364908 MsG0180001746.01.T01:CDS 35.0%
TTGTGGCTGCAATAAAGAAA+TGG + Chr1:26365774-26365793 MsG0180001746.01.T01:CDS 35.0%
! AAAGCTTGTTCCTTCTTTGT+TGG + Chr1:26363550-26363569 MsG0180001746.01.T01:CDS 35.0%
! ATTTGAGGCATTAGAGAAAG+AGG - Chr1:26366132-26366151 None:intergenic 35.0%
! GACTCTAGTAATCTGAAGTT+TGG - Chr1:26366110-26366129 None:intergenic 35.0%
! GCTAAGAATGATCCCAATTT+TGG + Chr1:26366303-26366322 MsG0180001746.01.T01:CDS 35.0%
! GTATGAGGTATTTGAGAGAA+TGG + Chr1:26364796-26364815 MsG0180001746.01.T01:CDS 35.0%
! TTCTTCTGCAAGCACTTTTA+TGG - Chr1:26367025-26367044 None:intergenic 35.0%
! TTGGAAGAGTATGCAAAGAA+AGG + Chr1:26365842-26365861 MsG0180001746.01.T01:CDS 35.0%
!! ACCTTAGCCATTTTAGTGAA+GGG - Chr1:26365752-26365771 None:intergenic 35.0%
!! AGAATCTTGATAAAGGTGTC+TGG - Chr1:26364437-26364456 None:intergenic 35.0%
!! TAAAGTTCTTTAGGGTCACT+AGG - Chr1:26365812-26365831 None:intergenic 35.0%
!! TCAATGAATAAGAAGTGCCA+AGG - Chr1:26366786-26366805 None:intergenic 35.0%
!! TCATTGACTAGTTTAGGCAT+TGG + Chr1:26366799-26366818 MsG0180001746.01.T01:CDS 35.0%
!!! CCAGTTTTGGATTTGAGAAT+AGG - Chr1:26363523-26363542 None:intergenic 35.0%
AACAGTTTCACACATCACTG+AGG + Chr1:26366849-26366868 MsG0180001746.01.T01:CDS 40.0%
ACTAATTCAAGTACTAGGGC+AGG + Chr1:26366238-26366257 MsG0180001746.01.T01:CDS 40.0%
AGTGCTTGCAGAAGAATTGA+AGG + Chr1:26367029-26367048 MsG0180001746.01.T01:CDS 40.0%
ATTGTAGTGCTTTCGTTGCT+TGG - Chr1:26363741-26363760 None:intergenic 40.0%
ATTTGGGCAACCATTGTACT+AGG - Chr1:26366343-26366362 None:intergenic 40.0%
CAAATTCCACCAGCAAGTTT+AGG + Chr1:26366418-26366437 MsG0180001746.01.T01:CDS 40.0%
CAAGGAACAACACTTGATAG+AGG + Chr1:26366382-26366401 MsG0180001746.01.T01:CDS 40.0%
CATGGAGTAGTTGAAAATGG+AGG + Chr1:26366637-26366656 MsG0180001746.01.T01:CDS 40.0%
CCGTAAACAAGCATTCTTGT+TGG - Chr1:26364035-26364054 None:intergenic 40.0%
CTAATTCAAGTACTAGGGCA+GGG + Chr1:26366239-26366258 MsG0180001746.01.T01:CDS 40.0%
CTTCTACCAATGTCACCAAT+TGG + Chr1:26364888-26364907 MsG0180001746.01.T01:CDS 40.0%
CTTGTAAGACCTAACTCAAC+AGG + Chr1:26364392-26364411 MsG0180001746.01.T01:intron 40.0%
CTTTCGGTCTATAGGCAAAA+TGG - Chr1:26364506-26364525 None:intergenic 40.0%
GAACACTACTAGCTGTAATG+TGG - Chr1:26365428-26365447 None:intergenic 40.0%
GATATTCCAAGTCCAAGAGT+TGG - Chr1:26365672-26365691 None:intergenic 40.0%
GGTTTCCTCTACATGTGTAA+CGG - Chr1:26366275-26366294 None:intergenic 40.0%
GTTCAAATGTGCAATTGGCA+GGG + Chr1:26365313-26365332 MsG0180001746.01.T01:intron 40.0%
GTTTCCTCTACATGTGTAAC+GGG - Chr1:26366274-26366293 None:intergenic 40.0%
TATATGCAGGTTCCTCAACA+AGG + Chr1:26366204-26366223 MsG0180001746.01.T01:intron 40.0%
TCAATTCTTGATGGAGAGGT+AGG + Chr1:26363983-26364002 MsG0180001746.01.T01:intron 40.0%
TCCCTTCACTAAAATGGCTA+AGG + Chr1:26365748-26365767 MsG0180001746.01.T01:CDS 40.0%
TTAGCATTGCCTGTTGAGTT+AGG - Chr1:26364404-26364423 None:intergenic 40.0%
TTGGTCAGACTTTACTCTTC+TGG + Chr1:26365136-26365155 MsG0180001746.01.T01:intron 40.0%
TTGTAGTGCTTTCGTTGCTT+GGG - Chr1:26363740-26363759 None:intergenic 40.0%
TTTCCTCTACATGTGTAACG+GGG - Chr1:26366273-26366292 None:intergenic 40.0%
! AACAGCTGAAGCATTTGTAG+AGG + Chr1:26366711-26366730 MsG0180001746.01.T01:CDS 40.0%
! ACAACACTTGATAGAGGCAT+TGG + Chr1:26366388-26366407 MsG0180001746.01.T01:CDS 40.0%
! AGCTTTCCAACAACCAGTTT+TGG - Chr1:26363536-26363555 None:intergenic 40.0%
!! AATGTACCTAAACTTGCTGG+TGG - Chr1:26366427-26366446 None:intergenic 40.0%
!! AGATGGACTAAAAACCCTAG+AGG + Chr1:26366511-26366530 MsG0180001746.01.T01:CDS 40.0%
!! CAACACTTGATAGAGGCATT+GGG + Chr1:26366389-26366408 MsG0180001746.01.T01:CDS 40.0%
!! CTAAACTTGCTGGTGGAATT+TGG - Chr1:26366420-26366439 None:intergenic 40.0%
!! GACCTTAGCCATTTTAGTGA+AGG - Chr1:26365753-26365772 None:intergenic 40.0%
!! TCTTTAGGGTCACTAGGAAT+AGG - Chr1:26365806-26365825 None:intergenic 40.0%
AATGGGGAGGAGTGAATTCA+GGG - Chr1:26363706-26363725 None:intergenic 45.0%
ACATCCATTTCATGGCACTC+AGG - Chr1:26365385-26365404 None:intergenic 45.0%
AGCATACATGAGAGAGCAAG+AGG - Chr1:26363586-26363605 None:intergenic 45.0%
AGGGAGTCCCTTCACTAAAA+TGG + Chr1:26365742-26365761 MsG0180001746.01.T01:CDS 45.0%
CAAAAGTCCAATAACGGCCA+AGG - Chr1:26364967-26364986 None:intergenic 45.0%
CATGAGAGAGCAAGAGGAAA+TGG - Chr1:26363580-26363599 None:intergenic 45.0%
CTACTTCAAAGGATGGGCAT+AGG + Chr1:26366541-26366560 MsG0180001746.01.T01:CDS 45.0%
CTTATACCTCAATGTGGGAG+TGG - Chr1:26365885-26365904 None:intergenic 45.0%
CTTGGGGTGGTTTCCTTAAT+GGG - Chr1:26363723-26363742 None:intergenic 45.0%
GAATTCACTCCTCCCCATTA+AGG + Chr1:26363707-26363726 MsG0180001746.01.T01:intron 45.0%
GGAGTCAATTCTTGATGGAG+AGG + Chr1:26363979-26363998 MsG0180001746.01.T01:intron 45.0%
GGATATGCACTTCCAACTCT+TGG + Chr1:26365657-26365676 MsG0180001746.01.T01:intron 45.0%
GGATGTTCAGCATCGTCTTT+GGG + Chr1:26365577-26365596 MsG0180001746.01.T01:intron 45.0%
GGGAAGCGGAAAAATACTGA+AGG - Chr1:26365910-26365929 None:intergenic 45.0%
GGTTCAAATGTGCAATTGGC+AGG + Chr1:26365312-26365331 MsG0180001746.01.T01:intron 45.0%
GTGAGTGAGTTCACACAAGA+TGG + Chr1:26363475-26363494 MsG0180001746.01.T01:CDS 45.0%
TAATGGGGAGGAGTGAATTC+AGG - Chr1:26363707-26363726 None:intergenic 45.0%
TATGTTGCTGATGCCTACCT+TGG + Chr1:26364947-26364966 MsG0180001746.01.T01:CDS 45.0%
TCACACATCACTGAGGAACA+TGG + Chr1:26366856-26366875 MsG0180001746.01.T01:CDS 45.0%
TGGATGTTCAGCATCGTCTT+TGG + Chr1:26365576-26365595 MsG0180001746.01.T01:intron 45.0%
TGTAGTGCTTTCGTTGCTTG+GGG - Chr1:26363739-26363758 None:intergenic 45.0%
TTGATTCCACTCCCACATTG+AGG + Chr1:26365876-26365895 MsG0180001746.01.T01:CDS 45.0%
TTGGGGTGGTTTCCTTAATG+GGG - Chr1:26363722-26363741 None:intergenic 45.0%
! GATAATGTTGGCTGGACTCT+TGG + Chr1:26365636-26365655 MsG0180001746.01.T01:intron 45.0%
! TATCTTGTAGGCTAGCTAGC+AGG - Chr1:26364570-26364589 None:intergenic 45.0%
! TCTTGACACATGCCTTGTTG+AGG - Chr1:26366219-26366238 None:intergenic 45.0%
!!! AGGTGGTTTTAGGCTTGGAA+GGG - Chr1:26365365-26365384 None:intergenic 45.0%
AACACACACACACAAGTGCG+AGG - Chr1:26364469-26364488 None:intergenic 50.0%
ACACACAAGTGCGAGGTCTA+GGG - Chr1:26364462-26364481 None:intergenic 50.0%
ACCAATGTCACCAATTGGGC+TGG + Chr1:26364893-26364912 MsG0180001746.01.T01:CDS 50.0%
ACCACCTGAGTGCCATGAAA+TGG + Chr1:26365378-26365397 MsG0180001746.01.T01:CDS 50.0%
ACTGAGGAACATGGCCACAA+AGG + Chr1:26366865-26366884 MsG0180001746.01.T01:CDS 50.0%
AGGAACATGGCCACAAAGGT+TGG + Chr1:26366869-26366888 MsG0180001746.01.T01:CDS 50.0%
AGTCCAATAACGGCCAAGGT+AGG - Chr1:26364963-26364982 None:intergenic 50.0%
AGTGGGAACAGGTGGAACAA+AGG + Chr1:26365471-26365490 MsG0180001746.01.T01:CDS 50.0%
ATGCCTACCTTGGCCGTTAT+TGG + Chr1:26364957-26364976 MsG0180001746.01.T01:CDS 50.0%
CCAAGGCTCTTCATGCTTTC+TGG - Chr1:26366769-26366788 None:intergenic 50.0%
GCACTCTACACTCTAGCAGT+GGG + Chr1:26365454-26365473 MsG0180001746.01.T01:CDS 50.0%
GCACTTCCAACTCTTGGACT+TGG + Chr1:26365663-26365682 MsG0180001746.01.T01:intron 50.0%
GCTTGGGGTGGTTTCCTTAA+TGG - Chr1:26363724-26363743 None:intergenic 50.0%
TACACTCTAGCAGTGGGAAC+AGG + Chr1:26365460-26365479 MsG0180001746.01.T01:CDS 50.0%
TCCATTTCATGGCACTCAGG+TGG - Chr1:26365382-26365401 None:intergenic 50.0%
TGCACTCTACACTCTAGCAG+TGG + Chr1:26365453-26365472 MsG0180001746.01.T01:CDS 50.0%
TTAGTGAAGGGACTCCCTGT+AGG - Chr1:26365740-26365759 None:intergenic 50.0%
! CATGGCACTCAGGTGGTTTT+AGG - Chr1:26365375-26365394 None:intergenic 50.0%
! CCAGAAAGCATGAAGAGCCT+TGG + Chr1:26366766-26366785 MsG0180001746.01.T01:CDS 50.0%
!!! CACTCAGGTGGTTTTAGGCT+TGG - Chr1:26365370-26365389 None:intergenic 50.0%
!!! CAGGTGGTTTTAGGCTTGGA+AGG - Chr1:26365366-26365385 None:intergenic 50.0%
ACTCTAGCAGTGGGAACAGG+TGG + Chr1:26365463-26365482 MsG0180001746.01.T01:CDS 55.0%
AGTGCTTTCGTTGCTTGGGG+TGG - Chr1:26363736-26363755 None:intergenic 55.0%
CACACACAAGTGCGAGGTCT+AGG - Chr1:26364463-26364482 None:intergenic 55.0%
GGGTGGTTTCCTTAATGGGG+AGG - Chr1:26363719-26363738 None:intergenic 55.0%
GTGCCCCGTTACACATGTAG+AGG + Chr1:26366267-26366286 MsG0180001746.01.T01:CDS 55.0%
! CCAAATGGTGCCAGCCCAAT+TGG - Chr1:26364906-26364925 None:intergenic 55.0%
! GCCAGCCCAATTGGTGACAT+TGG - Chr1:26364897-26364916 None:intergenic 55.0%
!! CCAATTGGGCTGGCACCATT+TGG + Chr1:26364903-26364922 MsG0180001746.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 26363457 26367074 26363457 ID=MsG0180001746.01;Name=MsG0180001746.01
Chr1 mRNA 26363457 26367074 26363457 ID=MsG0180001746.01.T01;Parent=MsG0180001746.01;Name=MsG0180001746.01.T01;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|0.8|5|0|540
Chr1 exon 26363457 26363571 26363457 ID=MsG0180001746.01.T01:exon:679;Parent=MsG0180001746.01.T01
Chr1 exon 26364795 26365012 26364795 ID=MsG0180001746.01.T01:exon:680;Parent=MsG0180001746.01.T01
Chr1 exon 26365334 26365574 26365334 ID=MsG0180001746.01.T01:exon:681;Parent=MsG0180001746.01.T01
Chr1 exon 26365711 26365897 26365711 ID=MsG0180001746.01.T01:exon:682;Parent=MsG0180001746.01.T01
Chr1 exon 26366213 26367074 26366213 ID=MsG0180001746.01.T01:exon:683;Parent=MsG0180001746.01.T01
Chr1 CDS 26363457 26363571 26363457 ID=MsG0180001746.01.T01:cds;Parent=MsG0180001746.01.T01
Chr1 CDS 26364795 26365012 26364795 ID=MsG0180001746.01.T01:cds;Parent=MsG0180001746.01.T01
Chr1 CDS 26365334 26365574 26365334 ID=MsG0180001746.01.T01:cds;Parent=MsG0180001746.01.T01
Chr1 CDS 26365711 26365897 26365711 ID=MsG0180001746.01.T01:cds;Parent=MsG0180001746.01.T01
Chr1 CDS 26366213 26367074 26366213 ID=MsG0180001746.01.T01:cds;Parent=MsG0180001746.01.T01
Gene Sequence

>MsG0180001746.01.T01

ATGGAAGAGGGAAGGGTAGTGAGTGAGTTCACACAAGATGGAACTGTTGATCTTAAAGGGAAACCTATTCTCAAATCCAAAACTGGTTGTTGGAAAGCTTGTTCCTTCTTTGTTGTGTATGAGGTATTTGAGAGAATGGCTTATTATGGGATATCATCAAATTTGATCTTATATTTGACAAATAAGCTTCATCAAGGAACTGTGACTTCTTCTACCAATGTCACCAATTGGGCTGGCACCATTTGGATCACTCCAATATTTGGTGCTTATGTTGCTGATGCCTACCTTGGCCGTTATTGGACTTTTGTCACTGCCTCTTTCATCTATCTATTGGGTATGTGTATGCTTACACTATCAGTTTCCCTTCCAAGCCTAAAACCACCTGAGTGCCATGAAATGGATGTGACAAAATGCAAGAAAGCTTCCACATTACAGCTAGTAGTGTTCTATGGTGCACTCTACACTCTAGCAGTGGGAACAGGTGGAACAAAGGCTAACATTTCCACTATTGGTGCTGATCAATTTGATGAGTTTGACACAAAGAGAAGAAACATAAACTCTCATTCTTCAATTGGAACACCATTCTATAGACATAAATTACCTACAGGGAGTCCCTTCACTAAAATGGCTAAGGTCATTGTGGCTGCAATAAAGAAATGGAATGTGCCTATTCCTAGTGACCCTAAAGAACTTTATGAGCTAGATTTGGAAGAGTATGCAAAGAAAGGAAATGTTAGAATTGATTCCACTCCCACATTGAGGTTCCTCAACAAGGCATGTGTCAAGACTAATTCAAGTACTAGGGCAGGGAAATTGTGCCCCGTTACACATGTAGAGGAAACCAAACAAATGCTAAGAATGATCCCAATTTTGGCTACAACATTAATTCCTAGTACAATGGTTGCCCAAATAAATACACTATTTGTGAAGCAAGGAACAACACTTGATAGAGGCATTGGGAGTTTCCAAATTCCACCAGCAAGTTTAGGTACATTTGTGACACTATCAATGCTTATAAGTGTTATACTTTATGATCGTTTCTTTGTCAAGATTATGCAAAGATGGACTAAAAACCCTAGAGGAATTACTCTACTTCAAAGGATGGGCATAGGTATGATAATCCATATAATGATTATGGTAGTTGCAACTTTCACCGAAAGATATAGGCTTAGTGTAGCCAAAAAACATGGAGTAGTTGAAAATGGAGGAATGGTTCCATTGAGCATATTCATTTTGCTTCCACAATTTATACTTATGGGAACAGCTGAAGCATTTGTAGAGGTTGCTAAAATCGAGTTCTTTTATGATCAAGCTCCAGAAAGCATGAAGAGCCTTGGCACTTCTTATTCATTGACTAGTTTAGGCATTGGAAGTTTTATTAGTACTTTTCTTCTATCAACAGTTTCACACATCACTGAGGAACATGGCCACAAAGGTTGGATTTTGAATAATCTTAATGCTTCTCATCTTGATTACTATTATGCATTTTTGGCAATATTAAACATCTTGAACTTCCTCTTCTTTTGTATTTTTACAAAGTTCTATGTATATAGAGCTGAAATTTCAGATTCCATAAAAGTGCTTGCAGAAGAATTGAAGGAGAAGACAAGTGTTGTCTCATAA
Protein sequence

>MsG0180001746.01.T01

MEEGRVVSEFTQDGTVDLKGKPILKSKTGCWKACSFFVVYEVFERMAYYGISSNLILYLTNKLHQGTVTSSTNVTNWAGTIWITPIFGAYVADAYLGRYWTFVTASFIYLLGMCMLTLSVSLPSLKPPECHEMDVTKCKKASTLQLVVFYGALYTLAVGTGGTKANISTIGADQFDEFDTKRRNINSHSSIGTPFYRHKLPTGSPFTKMAKVIVAAIKKWNVPIPSDPKELYELDLEEYAKKGNVRIDSTPTLRFLNKACVKTNSSTRAGKLCPVTHVEETKQMLRMIPILATTLIPSTMVAQINTLFVKQGTTLDRGIGSFQIPPASLGTFVTLSMLISVILYDRFFVKIMQRWTKNPRGITLLQRMGIGMIIHIMIMVVATFTERYRLSVAKKHGVVENGGMVPLSIFILLPQFILMGTAEAFVEVAKIEFFYDQAPESMKSLGTSYSLTSLGIGSFISTFLLSTVSHITEEHGHKGWILNNLNASHLDYYYAFLAILNILNFLFFCIFTKFYVYRAEISDSIKVLAEELKEKTSVVS*