Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035896.01.T01 | PNY17838.1 | 49.099 | 222 | 113 | 0 | 18 | 239 | 1 | 222 | 1.43E-66 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035896.01.T01 | A0A2K3PRC0 | 49.099 | 222 | 113 | 0 | 18 | 239 | 1 | 222 | 6.85e-67 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380013596.01 | MsG0680035896.01 | 0.805762 | 1.141221e-49 | 6.088542e-47 |
| MsG0380013883.01 | MsG0680035896.01 | 0.830244 | 3.276206e-55 | 3.432534e-52 |
| MsG0380013896.01 | MsG0680035896.01 | 0.825518 | 4.488121e-54 | 4.100097e-51 |
| MsG0380014867.01 | MsG0680035896.01 | 0.819394 | 1.188394e-52 | 9.133421e-50 |
| MsG0680031380.01 | MsG0680035896.01 | 0.833800 | 4.331807e-56 | 5.043382e-53 |
| MsG0680032844.01 | MsG0680035896.01 | 0.841240 | 5.357694e-58 | 7.823044e-55 |
| MsG0480019482.01 | MsG0680035896.01 | 0.801918 | 7.178209e-49 | 3.469948e-46 |
| MsG0380014977.01 | MsG0680035896.01 | 0.875399 | 3.178329e-68 | 1.481637e-64 |
| MsG0380017312.01 | MsG0680035896.01 | 0.812699 | 3.717479e-51 | 2.379983e-48 |
| MsG0380017820.01 | MsG0680035896.01 | 0.804377 | 2.224832e-49 | 1.145332e-46 |
| MsG0380017821.01 | MsG0680035896.01 | 0.800201 | 1.610592e-48 | 7.454123e-46 |
| MsG0580026222.01 | MsG0680035896.01 | 0.844389 | 7.791968e-59 | 1.255935e-55 |
| MsG0580026275.01 | MsG0680035896.01 | 0.847606 | 1.039701e-59 | 1.857934e-56 |
| MsG0580026276.01 | MsG0680035896.01 | 0.848324 | 6.591096e-60 | 1.205095e-56 |
| MsG0580026434.01 | MsG0680035896.01 | 0.809683 | 1.676361e-50 | 9.906944e-48 |
| MsG0580027332.01 | MsG0680035896.01 | 0.825229 | 5.253310e-54 | 4.760028e-51 |
| MsG0580029381.01 | MsG0680035896.01 | 0.831512 | 1.600544e-55 | 1.740735e-52 |
| MsG0280008759.01 | MsG0680035896.01 | 0.810961 | 8.884372e-51 | 5.431204e-48 |
| MsG0280009248.01 | MsG0680035896.01 | 0.801281 | 9.694460e-49 | 4.611537e-46 |
| MsG0280009306.01 | MsG0680035896.01 | 0.833477 | 5.215545e-56 | 6.013138e-53 |
| MsG0280009371.01 | MsG0680035896.01 | 0.822342 | 2.493959e-53 | 2.081780e-50 |
| MsG0280010444.01 | MsG0680035896.01 | 0.808149 | 3.569946e-50 | 2.025799e-47 |
| MsG0680035896.01 | MsG0780036498.01 | 0.828888 | 6.997100e-55 | 7.045848e-52 |
| MsG0680035896.01 | MsG0780036614.01 | 0.801604 | 8.326596e-49 | 3.992924e-46 |
| MsG0680035896.01 | MsG0780039282.01 | 0.869025 | 4.215655e-66 | 1.558098e-62 |
| MsG0680035896.01 | MsG0880041916.01 | 0.804398 | 2.202033e-49 | 1.134172e-46 |
| MsG0680035896.01 | MsG0880044644.01 | 0.875034 | 4.233386e-68 | 1.948301e-64 |
| MsG0680035896.01 | MsG0880044788.01 | 0.841331 | 5.070683e-58 | 7.425256e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035896.01.T01 | MTR_7g039210 | 27.928 | 222 | 130 | 4 | 26 | 217 | 9 | 230 | 1.89e-28 | 108 |
| MsG0680035896.01.T01 | MTR_1g041870 | 28.571 | 196 | 112 | 3 | 45 | 240 | 7 | 174 | 1.09e-26 | 102 |
| MsG0680035896.01.T01 | MTR_1g054495 | 25.676 | 222 | 164 | 1 | 18 | 239 | 1 | 221 | 1.35e-26 | 103 |
| MsG0680035896.01.T01 | MTR_1g054485 | 29.412 | 187 | 132 | 0 | 18 | 204 | 1 | 187 | 1.53e-26 | 102 |
| MsG0680035896.01.T01 | MTR_4g085790 | 29.646 | 226 | 150 | 3 | 18 | 239 | 1 | 221 | 1.19e-25 | 100 |
| MsG0680035896.01.T01 | MTR_7g025150 | 30.702 | 228 | 145 | 5 | 18 | 239 | 1 | 221 | 4.43e-24 | 96.3 |
| MsG0680035896.01.T01 | MTR_0014s0220 | 27.442 | 215 | 139 | 2 | 25 | 239 | 626 | 823 | 1.35e-21 | 93.6 |
| MsG0680035896.01.T01 | MTR_4g123470 | 27.053 | 207 | 151 | 0 | 32 | 238 | 18 | 224 | 3.29e-21 | 89.0 |
| MsG0680035896.01.T01 | MTR_4g053550 | 36.111 | 72 | 46 | 0 | 41 | 112 | 47 | 118 | 1.35e-11 | 60.5 |
| MsG0680035896.01.T01 | MTR_4g069750 | 35.052 | 97 | 63 | 0 | 18 | 114 | 1 | 97 | 2.66e-11 | 58.9 |
| MsG0680035896.01.T01 | MTR_5g074790 | 29.358 | 109 | 77 | 0 | 31 | 139 | 161 | 269 | 3.00e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACAACCCTCTATCTTTC+TGG | 0.158834 | 6:+114102000 | MsG0680035896.01.T01:CDS |
| CCGATTAATCAGCAGGATTT+TGG | 0.187815 | 6:+114102091 | MsG0680035896.01.T01:intron |
| TTTCACCTATGGAGAATTAT+TGG | 0.194379 | 6:+114101947 | MsG0680035896.01.T01:CDS |
| AAAACATGAACCTTCTTCTT+AGG | 0.199782 | 6:-114102761 | None:intergenic |
| GAGGTTGTTCTCTTCTACTA+TGG | 0.301858 | 6:+114102289 | MsG0680035896.01.T01:CDS |
| TACTGTTGCTGCCTCTCATT+TGG | 0.302835 | 6:+114102435 | MsG0680035896.01.T01:CDS |
| TACTATGGTAACGATCTCTT+TGG | 0.314615 | 6:+114102304 | MsG0680035896.01.T01:CDS |
| AAGGAGTTCTGTAAGGAAAT+TGG | 0.327796 | 6:+114102692 | MsG0680035896.01.T01:CDS |
| CACTCCTATTGCCGTCTTCA+TGG | 0.357892 | 6:-114102663 | None:intergenic |
| CAACTCTCATTCCACGACTA+TGG | 0.397696 | 6:-114102375 | None:intergenic |
| AGAGAACAACCTCCTGGTTT+CGG | 0.410476 | 6:-114102279 | None:intergenic |
| TTCCTTGATGAACAACCATA+TGG | 0.430156 | 6:+114101973 | MsG0680035896.01.T01:CDS |
| CAACAGTAAAAGCATTCAAC+TGG | 0.433820 | 6:-114102420 | None:intergenic |
| TAGTAAGAAGCTCGAAAATC+CGG | 0.435576 | 6:+114102336 | MsG0680035896.01.T01:CDS |
| TCAGTAAGAAGTGGATGAAC+AGG | 0.440343 | 6:-114102220 | None:intergenic |
| CCCTCCATGAAGACGGCAAT+AGG | 0.440838 | 6:+114102659 | MsG0680035896.01.T01:CDS |
| ACTATGGTAACGATCTCTTT+GGG | 0.443044 | 6:+114102305 | MsG0680035896.01.T01:CDS |
| TTACCTTGCCAGAAAGATAG+AGG | 0.455528 | 6:-114102008 | None:intergenic |
| GTTCATCCACTTCTTACTGA+TGG | 0.459428 | 6:+114102223 | MsG0680035896.01.T01:CDS |
| GAGAATCCATAGGGAGTTTG+AGG | 0.460901 | 6:+114102547 | MsG0680035896.01.T01:intron |
| CTCCATATGGTTGTTCATCA+AGG | 0.462097 | 6:-114101975 | None:intergenic |
| CATAGTCCTCAAACTCCCTA+TGG | 0.468898 | 6:-114102553 | None:intergenic |
| GAGGACTATGTTAGAGCTTG+TGG | 0.470662 | 6:+114102566 | MsG0680035896.01.T01:CDS |
| TGAAAGTTGATGAAGTTGTT+TGG | 0.470795 | 6:-114101929 | None:intergenic |
| ATCCACTTCTTACTGATGGT+TGG | 0.473720 | 6:+114102227 | MsG0680035896.01.T01:CDS |
| AATTCTTAATCCTAAGAAGA+AGG | 0.474339 | 6:+114102751 | MsG0680035896.01.T01:CDS |
| ACTTCATCAACTTTCACCTA+TGG | 0.475861 | 6:+114101936 | MsG0680035896.01.T01:CDS |
| TTGTTGTCTTCAAAGAAAAG+TGG | 0.498344 | 6:-114102124 | None:intergenic |
| CCTATTGCCGTCTTCATGGA+GGG | 0.526335 | 6:-114102659 | None:intergenic |
| GGGGTGGAAGGAGTTCTGTA+AGG | 0.538186 | 6:+114102685 | MsG0680035896.01.T01:CDS |
| GGCAATAGGAGTGGGGTGGA+AGG | 0.540633 | 6:+114102673 | MsG0680035896.01.T01:CDS |
| ACTTCTTACTGATGGTTGGA+AGG | 0.546167 | 6:+114102231 | MsG0680035896.01.T01:CDS |
| ATGAAGACGGCAATAGGAGT+GGG | 0.547210 | 6:+114102665 | MsG0680035896.01.T01:CDS |
| ATTCCACGACTATGGTAAGT+AGG | 0.548596 | 6:-114102367 | None:intergenic |
| TGATGGTTGGAAGGATATGC+AGG | 0.555282 | 6:+114102240 | MsG0680035896.01.T01:CDS |
| TTCCAACCATCAGTAAGAAG+TGG | 0.557115 | 6:-114102229 | None:intergenic |
| CATAGTCGTGGAATGAGAGT+TGG | 0.563775 | 6:+114102376 | MsG0680035896.01.T01:CDS |
| TTGACTCTGTGTTGCGACAA+TGG | 0.565518 | 6:+114102599 | MsG0680035896.01.T01:CDS |
| TCCTATTGCCGTCTTCATGG+AGG | 0.571158 | 6:-114102660 | None:intergenic |
| AACCCTCTATCTTTCTGGCA+AGG | 0.572362 | 6:+114102005 | MsG0680035896.01.T01:CDS |
| TGGTAAGTAGGAATCTGATC+CGG | 0.572710 | 6:-114102355 | None:intergenic |
| AGGGTTGTAAAACCTCCATA+TGG | 0.588874 | 6:-114101988 | None:intergenic |
| AGTAGAAGAGAACAACCTCC+TGG | 0.595482 | 6:-114102285 | None:intergenic |
| CCTCAAGGTTACTTTCAACA+AGG | 0.595975 | 6:+114102195 | MsG0680035896.01.T01:CDS |
| CTTGATGAACAACCATATGG+AGG | 0.601812 | 6:+114101976 | MsG0680035896.01.T01:CDS |
| AAATTCCAATAATTCTCCAT+AGG | 0.603347 | 6:-114101952 | None:intergenic |
| CATGAAGACGGCAATAGGAG+TGG | 0.603758 | 6:+114102664 | MsG0680035896.01.T01:CDS |
| GGATGAACCCTCCATGAAGA+CGG | 0.619923 | 6:+114102652 | MsG0680035896.01.T01:CDS |
| ATTCCTACTTACCATAGTCG+TGG | 0.621922 | 6:+114102364 | MsG0680035896.01.T01:CDS |
| AAACTAACTAACCAAATGAG+AGG | 0.627212 | 6:-114102446 | None:intergenic |
| TACCTTGCCAGAAAGATAGA+GGG | 0.634498 | 6:-114102007 | None:intergenic |
| AGACGGCAATAGGAGTGGGG+TGG | 0.655910 | 6:+114102669 | MsG0680035896.01.T01:CDS |
| CCTTGTTGAAAGTAACCTTG+AGG | 0.679764 | 6:-114102195 | None:intergenic |
| TGAAGACGGCAATAGGAGTG+GGG | 0.695742 | 6:+114102666 | MsG0680035896.01.T01:CDS |
| CTACGCGGATAAGAGCCTCA+AGG | 0.697712 | 6:+114102180 | MsG0680035896.01.T01:CDS |
| CAACTGGAGATAGAAATGCA+TGG | 0.726975 | 6:-114102404 | None:intergenic |
| ATGGACGATAATGAACTACG+CGG | 0.807507 | 6:+114102165 | MsG0680035896.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAATCACAAAACA+TGG | - | Chr6:114102062-114102081 | None:intergenic | 20.0% |
| ! | AAATTCCAATAATTCTCCAT+AGG | - | Chr6:114101955-114101974 | None:intergenic | 25.0% |
| ! | AATTCTTAATCCTAAGAAGA+AGG | + | Chr6:114102751-114102770 | MsG0680035896.01.T01:CDS | 25.0% |
| AAAACATGAACCTTCTTCTT+AGG | - | Chr6:114102764-114102783 | None:intergenic | 30.0% | |
| AAACTAACTAACCAAATGAG+AGG | - | Chr6:114102449-114102468 | None:intergenic | 30.0% | |
| TTGTTGTCTTCAAAGAAAAG+TGG | - | Chr6:114102127-114102146 | None:intergenic | 30.0% | |
| TTTCACCTATGGAGAATTAT+TGG | + | Chr6:114101947-114101966 | MsG0680035896.01.T01:CDS | 30.0% | |
| ! | TTTTGTTCAGAGAATCCATA+GGG | + | Chr6:114102538-114102557 | MsG0680035896.01.T01:intron | 30.0% |
| !! | ACTTTTCTTTGAAGACAACA+AGG | + | Chr6:114102126-114102145 | MsG0680035896.01.T01:CDS | 30.0% |
| !! | GAAGAAGGTTCATGTTTTTA+AGG | + | Chr6:114102766-114102785 | MsG0680035896.01.T01:CDS | 30.0% |
| !! | TCATTATCGTCCATTTTTCA+GGG | - | Chr6:114102159-114102178 | None:intergenic | 30.0% |
| !! | TGAAAGTTGATGAAGTTGTT+TGG | - | Chr6:114101932-114101951 | None:intergenic | 30.0% |
| !! | TTCATTATCGTCCATTTTTC+AGG | - | Chr6:114102160-114102179 | None:intergenic | 30.0% |
| !!! | AGGTTCATGTTTTTAAGGTT+AGG | + | Chr6:114102771-114102790 | MsG0680035896.01.T01:CDS | 30.0% |
| !!! | CTGTAAGGAAATTGGTTTTA+AGG | + | Chr6:114102700-114102719 | MsG0680035896.01.T01:CDS | 30.0% |
| AAGGAGTTCTGTAAGGAAAT+TGG | + | Chr6:114102692-114102711 | MsG0680035896.01.T01:CDS | 35.0% | |
| ACTTCATCAACTTTCACCTA+TGG | + | Chr6:114101936-114101955 | MsG0680035896.01.T01:CDS | 35.0% | |
| TAGTAAGAAGCTCGAAAATC+CGG | + | Chr6:114102336-114102355 | MsG0680035896.01.T01:CDS | 35.0% | |
| TTCCTTGATGAACAACCATA+TGG | + | Chr6:114101973-114101992 | MsG0680035896.01.T01:CDS | 35.0% | |
| TTTACAACCCTCTATCTTTC+TGG | + | Chr6:114102000-114102019 | MsG0680035896.01.T01:CDS | 35.0% | |
| ! | AAGGATATGCAGGATGTTTT+TGG | + | Chr6:114102250-114102269 | MsG0680035896.01.T01:CDS | 35.0% |
| ! | ACTATGGTAACGATCTCTTT+GGG | + | Chr6:114102305-114102324 | MsG0680035896.01.T01:CDS | 35.0% |
| ! | CCAAAATCCTGCTGATTAAT+CGG | - | Chr6:114102094-114102113 | None:intergenic | 35.0% |
| ! | GAAAACCTGAACACTCTTTT+TGG | - | Chr6:114102627-114102646 | None:intergenic | 35.0% |
| ! | TACTATGGTAACGATCTCTT+TGG | + | Chr6:114102304-114102323 | MsG0680035896.01.T01:CDS | 35.0% |
| !! | CAACAGTAAAAGCATTCAAC+TGG | - | Chr6:114102423-114102442 | None:intergenic | 35.0% |
| !! | GTTTTGTTCAGAGAATCCAT+AGG | + | Chr6:114102537-114102556 | MsG0680035896.01.T01:intron | 35.0% |
| ACTTCTTACTGATGGTTGGA+AGG | + | Chr6:114102231-114102250 | MsG0680035896.01.T01:CDS | 40.0% | |
| AGGATGATCTCCCTGAAAAA+TGG | + | Chr6:114102146-114102165 | MsG0680035896.01.T01:CDS | 40.0% | |
| AGGGTTGTAAAACCTCCATA+TGG | - | Chr6:114101991-114102010 | None:intergenic | 40.0% | |
| ATCCACTTCTTACTGATGGT+TGG | + | Chr6:114102227-114102246 | MsG0680035896.01.T01:CDS | 40.0% | |
| ATGGACGATAATGAACTACG+CGG | + | Chr6:114102165-114102184 | MsG0680035896.01.T01:CDS | 40.0% | |
| ATTCCACGACTATGGTAAGT+AGG | - | Chr6:114102370-114102389 | None:intergenic | 40.0% | |
| ATTCCTACTTACCATAGTCG+TGG | + | Chr6:114102364-114102383 | MsG0680035896.01.T01:CDS | 40.0% | |
| CAACTGGAGATAGAAATGCA+TGG | - | Chr6:114102407-114102426 | None:intergenic | 40.0% | |
| CCTTGTTGAAAGTAACCTTG+AGG | - | Chr6:114102198-114102217 | None:intergenic | 40.0% | |
| CTCCATATGGTTGTTCATCA+AGG | - | Chr6:114101978-114101997 | None:intergenic | 40.0% | |
| CTTGATGAACAACCATATGG+AGG | + | Chr6:114101976-114101995 | MsG0680035896.01.T01:CDS | 40.0% | |
| GAGGTTGTTCTCTTCTACTA+TGG | + | Chr6:114102289-114102308 | MsG0680035896.01.T01:CDS | 40.0% | |
| GTTCATCCACTTCTTACTGA+TGG | + | Chr6:114102223-114102242 | MsG0680035896.01.T01:CDS | 40.0% | |
| TACCTTGCCAGAAAGATAGA+GGG | - | Chr6:114102010-114102029 | None:intergenic | 40.0% | |
| TCAGTAAGAAGTGGATGAAC+AGG | - | Chr6:114102223-114102242 | None:intergenic | 40.0% | |
| TGGTAAGTAGGAATCTGATC+CGG | - | Chr6:114102358-114102377 | None:intergenic | 40.0% | |
| TTACCTTGCCAGAAAGATAG+AGG | - | Chr6:114102011-114102030 | None:intergenic | 40.0% | |
| TTCCAACCATCAGTAAGAAG+TGG | - | Chr6:114102232-114102251 | None:intergenic | 40.0% | |
| TTTCTGACCGATTAATCAGC+AGG | + | Chr6:114102084-114102103 | MsG0680035896.01.T01:intron | 40.0% | |
| ! | CCGATTAATCAGCAGGATTT+TGG | + | Chr6:114102091-114102110 | MsG0680035896.01.T01:intron | 40.0% |
| ! | CCTCAAGGTTACTTTCAACA+AGG | + | Chr6:114102195-114102214 | MsG0680035896.01.T01:CDS | 40.0% |
| !! | GAGTGTTCAGGTTTTCTATG+TGG | + | Chr6:114102631-114102650 | MsG0680035896.01.T01:CDS | 40.0% |
| !! | TAATCAGCAGGATTTTGGAG+AGG | + | Chr6:114102096-114102115 | MsG0680035896.01.T01:intron | 40.0% |
| !!! | TTTTGGTTTTCACCGAAACC+AGG | + | Chr6:114102267-114102286 | MsG0680035896.01.T01:CDS | 40.0% |
| AGAGAACAACCTCCTGGTTT+CGG | - | Chr6:114102282-114102301 | None:intergenic | 45.0% | |
| AGTAGAAGAGAACAACCTCC+TGG | - | Chr6:114102288-114102307 | None:intergenic | 45.0% | |
| ATGAAGACGGCAATAGGAGT+GGG | + | Chr6:114102665-114102684 | MsG0680035896.01.T01:CDS | 45.0% | |
| CAACTCTCATTCCACGACTA+TGG | - | Chr6:114102378-114102397 | None:intergenic | 45.0% | |
| CATAGTCCTCAAACTCCCTA+TGG | - | Chr6:114102556-114102575 | None:intergenic | 45.0% | |
| CATAGTCGTGGAATGAGAGT+TGG | + | Chr6:114102376-114102395 | MsG0680035896.01.T01:CDS | 45.0% | |
| GAGAATCCATAGGGAGTTTG+AGG | + | Chr6:114102547-114102566 | MsG0680035896.01.T01:intron | 45.0% | |
| GAGGACTATGTTAGAGCTTG+TGG | + | Chr6:114102566-114102585 | MsG0680035896.01.T01:CDS | 45.0% | |
| TACTGTTGCTGCCTCTCATT+TGG | + | Chr6:114102435-114102454 | MsG0680035896.01.T01:CDS | 45.0% | |
| TGATGGTTGGAAGGATATGC+AGG | + | Chr6:114102240-114102259 | MsG0680035896.01.T01:CDS | 45.0% | |
| TTGACTCTGTGTTGCGACAA+TGG | + | Chr6:114102599-114102618 | MsG0680035896.01.T01:CDS | 45.0% | |
| ! | AACCCTCTATCTTTCTGGCA+AGG | + | Chr6:114102005-114102024 | MsG0680035896.01.T01:CDS | 45.0% |
| !! | TGGTGCCAAAAAGAGTGTTC+AGG | + | Chr6:114102619-114102638 | MsG0680035896.01.T01:CDS | 45.0% |
| CACTCCTATTGCCGTCTTCA+TGG | - | Chr6:114102666-114102685 | None:intergenic | 50.0% | |
| CATGAAGACGGCAATAGGAG+TGG | + | Chr6:114102664-114102683 | MsG0680035896.01.T01:CDS | 50.0% | |
| CCTATTGCCGTCTTCATGGA+GGG | - | Chr6:114102662-114102681 | None:intergenic | 50.0% | |
| GGATGAACCCTCCATGAAGA+CGG | + | Chr6:114102652-114102671 | MsG0680035896.01.T01:CDS | 50.0% | |
| TCCTATTGCCGTCTTCATGG+AGG | - | Chr6:114102663-114102682 | None:intergenic | 50.0% | |
| TGAAGACGGCAATAGGAGTG+GGG | + | Chr6:114102666-114102685 | MsG0680035896.01.T01:CDS | 50.0% | |
| ! | TGGTTTTCACCGAAACCAGG+AGG | + | Chr6:114102270-114102289 | MsG0680035896.01.T01:CDS | 50.0% |
| CCCTCCATGAAGACGGCAAT+AGG | + | Chr6:114102659-114102678 | MsG0680035896.01.T01:CDS | 55.0% | |
| CTACGCGGATAAGAGCCTCA+AGG | + | Chr6:114102180-114102199 | MsG0680035896.01.T01:CDS | 55.0% | |
| GGGGTGGAAGGAGTTCTGTA+AGG | + | Chr6:114102685-114102704 | MsG0680035896.01.T01:CDS | 55.0% | |
| AGACGGCAATAGGAGTGGGG+TGG | + | Chr6:114102669-114102688 | MsG0680035896.01.T01:CDS | 60.0% | |
| GGCAATAGGAGTGGGGTGGA+AGG | + | Chr6:114102673-114102692 | MsG0680035896.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 114101904 | 114102799 | 114101904 | ID=MsG0680035896.01;Name=MsG0680035896.01 |
| Chr6 | mRNA | 114101904 | 114102799 | 114101904 | ID=MsG0680035896.01.T01;Parent=MsG0680035896.01;Name=MsG0680035896.01.T01;_AED=0.50;_eAED=0.78;_QI=0|0|0|1|1|1|3|0|241 |
| Chr6 | exon | 114101904 | 114102026 | 114101904 | ID=MsG0680035896.01.T01:exon:10054;Parent=MsG0680035896.01.T01 |
| Chr6 | exon | 114102106 | 114102456 | 114102106 | ID=MsG0680035896.01.T01:exon:10055;Parent=MsG0680035896.01.T01 |
| Chr6 | exon | 114102548 | 114102799 | 114102548 | ID=MsG0680035896.01.T01:exon:10056;Parent=MsG0680035896.01.T01 |
| Chr6 | CDS | 114101904 | 114102026 | 114101904 | ID=MsG0680035896.01.T01:cds;Parent=MsG0680035896.01.T01 |
| Chr6 | CDS | 114102106 | 114102456 | 114102106 | ID=MsG0680035896.01.T01:cds;Parent=MsG0680035896.01.T01 |
| Chr6 | CDS | 114102548 | 114102799 | 114102548 | ID=MsG0680035896.01.T01:cds;Parent=MsG0680035896.01.T01 |
| Gene Sequence |
| Protein sequence |
