AlfalfaGEDB | MsG0780038112.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038112.01

KEGG: -
GO: GO:0003677 GO:0003700 GO:0006355
PFAM: PF00847

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038112.01.T01	XP_003622605.1	86.939	245	19	2	1	242	1	235	1.09E-123	361

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038112.01.T01	Q8LBQ7	54.412	204	79	4	44	234	87	289	7.36E-63	201

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038112.01.T01	G7KUW7	86.939	245	19	2	1	242	1	235	5.23e-124	361

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TFs/TRs:

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Gene ID	Type	Classification
MsG0780038112.01.T01	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001565.01	MsG0780038112.01	0.804451	2.147170e-49	1.107428e-46
MsG0180005188.01	MsG0780038112.01	0.803552	3.301045e-49	1.663797e-46
MsG0280009514.01	MsG0780038112.01	0.802230	6.191473e-49	3.016848e-46
MsG0480022738.01	MsG0780038112.01	0.800712	1.266989e-48	5.940410e-46
MsG0780038093.01	MsG0780038112.01	0.893699	4.927253e-75	4.746818e-71
MsG0780038112.01	MsG0780039655.01	0.807315	5.366729e-50	2.979754e-47
MsG0780038112.01	MsG0880042845.01	0.813055	3.105744e-51	2.007128e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038112.01.T01	MTR_7g046260	86.939	245	19	2	1	242	1	235	1.33e-127	361
MsG0780038112.01.T01	MTR_8g006410	60.287	209	43	6	41	242	32	207	2.86e-66	204
MsG0780038112.01.T01	MTR_5g012910	58.182	165	34	4	45	209	15	144	4.13e-51	164
MsG0780038112.01.T01	MTR_2g101340	67.480	123	34	1	20	142	9	125	3.44e-48	158
MsG0780038112.01.T01	MTR_4g100650	51.741	201	76	6	51	242	66	254	2.19e-46	155
MsG0780038112.01.T01	MTR_3g110205	73.626	91	24	0	53	143	38	128	2.56e-45	150
MsG0780038112.01.T01	MTR_8g102800	48.936	188	75	4	44	222	23	198	2.88e-43	146
MsG0780038112.01.T01	MTR_6g088405	78.409	88	19	0	55	142	41	128	1.01e-41	142
MsG0780038112.01.T01	MTR_8g013860	64.348	115	40	1	28	142	18	131	2.94e-41	140
MsG0780038112.01.T01	MTR_6g088425	62.698	126	40	1	24	142	8	133	6.13e-40	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038112.01.T01	AT2G44940	54.412	204	79	4	44	234	87	289	7.50e-64	201
MsG0780038112.01.T01	AT5G11590	64.957	117	39	1	25	141	20	134	1.33e-47	157
MsG0780038112.01.T01	AT4G32800	68.627	102	31	1	43	144	5	105	4.86e-47	155
MsG0780038112.01.T01	AT3G60490	48.309	207	93	5	37	234	48	249	3.12e-46	154
MsG0780038112.01.T01	AT5G25810	72.917	96	26	0	44	139	22	117	5.65e-46	153
MsG0780038112.01.T01	AT4G16750	62.500	112	42	0	21	132	3	114	1.72e-44	147
MsG0780038112.01.T01	AT2G35700	80.000	80	16	0	53	132	40	119	5.59e-43	144
MsG0780038112.01.T01	AT3G16280	75.949	79	19	0	54	132	57	135	2.23e-40	139
MsG0780038112.01.T01	AT3G16280	75.949	79	19	0	54	132	75	153	3.98e-40	139
MsG0780038112.01.T01	AT2G25820	74.444	90	23	0	57	146	25	114	2.23e-39	136

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Find 40 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATACCCTACAGCTGAAA+TGG	0.429274	7:-40348859	MsG0780038112.01.T01:CDS
AAGAAGTCAAGAATATGGCT+TGG	0.541140	7:-40348882	MsG0780038112.01.T01:CDS
AATGAGAGCATGGGGAAAAT+GGG	0.409247	7:-40348928	MsG0780038112.01.T01:CDS
ACAAAACACCCTACATATAG+AGG	0.498954	7:-40348957	MsG0780038112.01.T01:CDS
AGAAGATGTTGGTGTTGATG+AGG	0.600399	7:+40349076	None:intergenic
AGACTCTTGAACATTATCAA+TGG	0.492221	7:+40348593	None:intergenic
AGCAGCAGCCATTGTGTTTG+AGG	0.373794	7:-40348703	MsG0780038112.01.T01:CDS
AGGTGTAAGAATGAGAGCAT+GGG	0.522254	7:-40348937	MsG0780038112.01.T01:CDS
ATGACGAAAGTTGCTCCTCG+AGG	0.696709	7:+40348421	None:intergenic
ATTCTTACACCTCTATATGT+AGG	0.455195	7:+40348948	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCAAAAATAGTCCTCAAAA+TGG	-	Chr7:40348500-40348519	MsG0780038112.01.T01:CDS	30.0%
AGACTCTTGAACATTATCAA+TGG	+	Chr7:40348930-40348949	None:intergenic	30.0%
ATTCTTACACCTCTATATGT+AGG	+	Chr7:40348575-40348594	None:intergenic	30.0%
CAAGAAAGAAGTCAAGAATA+TGG	-	Chr7:40348633-40348652	MsG0780038112.01.T01:CDS	30.0%
CATATTCTTGACTTCTTTCT+TGG	+	Chr7:40348635-40348654	None:intergenic	30.0%
TTACCTCAATTTCCCTAATT+TGG	-	Chr7:40348733-40348752	MsG0780038112.01.T01:CDS	30.0%
TTCTTACACCTCTATATGTA+GGG	+	Chr7:40348574-40348593	None:intergenic	30.0%
AAGAAGTCAAGAATATGGCT+TGG	-	Chr7:40348638-40348657	MsG0780038112.01.T01:CDS	35.0%
ACAAAACACCCTACATATAG+AGG	-	Chr7:40348563-40348582	MsG0780038112.01.T01:CDS	35.0%
CATTGTGTTTGAGGAGATTA+AGG	-	Chr7:40348826-40348845	MsG0780038112.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	40348407	40349135	40348407	ID=MsG0780038112.01;Name=MsG0780038112.01
Chr7	mRNA	40348407	40349135	40348407	ID=MsG0780038112.01.T01;Parent=MsG0780038112.01;Name=MsG0780038112.01.T01;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|242
Chr7	exon	40348407	40349135	40348407	ID=MsG0780038112.01.T01:exon:12644;Parent=MsG0780038112.01.T01
Chr7	CDS	40348407	40349135	40348407	ID=MsG0780038112.01.T01:cds;Parent=MsG0780038112.01.T01

Gene Sequence

>MsG0780038112.01.T01

ATGGAAAATGATGCTAATGAAAACTTCTTTAGCACATCCTCATCAACACCAACATCTTCTAACTCAAATTCAAATTCATCCACCAATCAAGTAACCAAAAATAGTCCTCAAAATGGAAATAAAAAATCCAAGAAAAGAGAGAGAAATGAAAATGACACAAAACACCCTACATATAGAGGTGTAAGAATGAGAGCATGGGGAAAATGGGTATCTGAAATCCGTGAGCCAAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCTCATGATGTAGCTGCTTTAGCCATAAAGGGTCATTCAGCTTACCTCAATTTCCCTAATTTGGCTCAAAATCTTCCAAGGCCTTCAACCACATCACCTAAGGACATTCAAGTTGCAGCTGCAAAAGCAGCAGCCATTGTGTTTGAGGAGATTAAGGAATGTTGCCAAGGTGAAAATGACCAACAACAAAATCAAGATCAAGATCAAGATCAAGTTTCATTTTCAACTCTTTCTTCCATTGATAATGTTCAAGAGTCTAATTCAAGTTCTCCATCTACTACTGCTACTACTAATGATGATATTGATGACACACTCTTTGATCTGCCAGATCTTTTTCCTGATGGAAAAAATGGAATTCTTTCTTATTCTTCTTCTTGGCATTTATGTGCTGTTGATAGTGGACTTCGCCTCGAGGAGCAACTTTCGTCATGGGAGTATTACTAG

Protein sequence

>MsG0780038112.01.T01

MENDANENFFSTSSSTPTSSNSNSNSSTNQVTKNSPQNGNKKSKKRERNENDTKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTSPKDIQVAAAKAAAIVFEEIKECCQGENDQQQNQDQDQDQVSFSTLSSIDNVQESNSSSPSTTATTNDDIDDTLFDLPDLFPDGKNGILSYSSSWHLCAVDSGLRLEEQLSSWEYY*