Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039117.01.T01 | XP_024625231.1 | 81.068 | 206 | 39 | 0 | 7 | 212 | 95 | 300 | 9.87E-76 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039117.01.T01 | A0A396GZ39 | 64.368 | 261 | 38 | 2 | 7 | 212 | 95 | 355 | 1.61e-66 | 232 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0680032801.01 | MsG0780039117.01 | 0.808521 | 2.972806e-50 | 1.703516e-47 |
| MsG0580027332.01 | MsG0780039117.01 | 0.806602 | 7.594462e-50 | 4.139350e-47 |
| MsG0280009248.01 | MsG0780039117.01 | 0.812382 | 4.359987e-51 | 2.768047e-48 |
| MsG0280009868.01 | MsG0780039117.01 | 0.814227 | 1.715541e-51 | 1.144530e-48 |
| MsG0780036134.01 | MsG0780039117.01 | 0.801552 | 8.531659e-49 | 4.086081e-46 |
| MsG0780036498.01 | MsG0780039117.01 | 0.815143 | 1.075008e-51 | 7.351576e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039117.01.T01 | MTR_0474s0020 | 64.130 | 184 | 59 | 2 | 35 | 211 | 85 | 268 | 1.17e-45 | 154 |
| MsG0780039117.01.T01 | MTR_0474s0020 | 69.444 | 144 | 42 | 1 | 35 | 176 | 85 | 228 | 2.86e-44 | 149 |
| MsG0780039117.01.T01 | MTR_7g066640 | 78.095 | 105 | 23 | 0 | 7 | 111 | 95 | 199 | 1.99e-41 | 140 |
| MsG0780039117.01.T01 | MTR_4g015930 | 40.141 | 142 | 84 | 1 | 65 | 206 | 131 | 271 | 1.11e-18 | 85.1 |
| MsG0780039117.01.T01 | MTR_4g015930 | 33.971 | 209 | 116 | 9 | 6 | 207 | 129 | 322 | 5.88e-12 | 65.1 |
| MsG0780039117.01.T01 | MTR_4g015930 | 33.333 | 201 | 124 | 6 | 6 | 206 | 178 | 368 | 4.52e-11 | 62.8 |
| MsG0780039117.01.T01 | MTR_4g015930 | 40.141 | 142 | 84 | 1 | 65 | 206 | 131 | 271 | 1.14e-18 | 84.7 |
| MsG0780039117.01.T01 | MTR_4g015930 | 33.971 | 209 | 116 | 9 | 6 | 207 | 129 | 322 | 5.59e-12 | 65.1 |
| MsG0780039117.01.T01 | MTR_4g015930 | 33.333 | 201 | 124 | 6 | 6 | 206 | 178 | 368 | 4.18e-11 | 62.8 |
| MsG0780039117.01.T01 | MTR_4g015930 | 40.141 | 142 | 84 | 1 | 65 | 206 | 131 | 271 | 1.27e-18 | 84.7 |
| MsG0780039117.01.T01 | MTR_4g015930 | 33.971 | 209 | 116 | 9 | 6 | 207 | 129 | 322 | 6.81e-12 | 65.1 |
| MsG0780039117.01.T01 | MTR_4g015930 | 33.333 | 201 | 124 | 6 | 6 | 206 | 178 | 368 | 5.43e-11 | 62.4 |
| MsG0780039117.01.T01 | MTR_7g066600 | 71.642 | 67 | 19 | 0 | 7 | 73 | 118 | 184 | 1.05e-17 | 78.6 |
| MsG0780039117.01.T01 | MTR_7g066620 | 64.865 | 74 | 23 | 1 | 142 | 212 | 20 | 93 | 4.28e-16 | 77.4 |
| MsG0780039117.01.T01 | MTR_0017s0270 | 34.270 | 178 | 95 | 4 | 52 | 208 | 151 | 327 | 7.06e-14 | 70.1 |
| MsG0780039117.01.T01 | MTR_0087s0050 | 33.810 | 210 | 130 | 5 | 9 | 212 | 149 | 355 | 7.48e-14 | 70.9 |
| MsG0780039117.01.T01 | MTR_0061s0050 | 32.273 | 220 | 119 | 5 | 10 | 208 | 700 | 910 | 1.32e-12 | 67.0 |
| MsG0780039117.01.T01 | MTR_0017s0230 | 32.273 | 220 | 119 | 5 | 10 | 208 | 665 | 875 | 1.69e-12 | 66.6 |
| MsG0780039117.01.T01 | MTR_2g064580 | 36.145 | 166 | 82 | 4 | 66 | 208 | 309 | 473 | 2.16e-12 | 66.2 |
| MsG0780039117.01.T01 | MTR_2g069880 | 36.145 | 166 | 82 | 4 | 66 | 208 | 296 | 460 | 2.24e-12 | 66.2 |
| MsG0780039117.01.T01 | MTR_5g069580 | 32.314 | 229 | 111 | 5 | 10 | 208 | 589 | 803 | 3.52e-12 | 65.9 |
| MsG0780039117.01.T01 | MTR_6g037750 | 33.529 | 170 | 83 | 4 | 66 | 210 | 941 | 1105 | 9.25e-12 | 64.7 |
| MsG0780039117.01.T01 | MTR_1g047190 | 34.884 | 172 | 77 | 4 | 66 | 208 | 222 | 387 | 1.65e-11 | 63.5 |
| MsG0780039117.01.T01 | MTR_4g016870 | 44.681 | 94 | 40 | 3 | 116 | 203 | 132 | 219 | 2.85e-11 | 62.0 |
| MsG0780039117.01.T01 | MTR_7g039330 | 36.620 | 142 | 87 | 2 | 65 | 206 | 422 | 560 | 3.79e-11 | 62.8 |
| MsG0780039117.01.T01 | MTR_4g016850 | 38.760 | 129 | 62 | 3 | 87 | 206 | 100 | 220 | 3.81e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039117.01.T01 | AT1G58190 | 29.703 | 202 | 128 | 5 | 7 | 206 | 173 | 362 | 7.34e-12 | 65.1 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.43e-11 | 63.9 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.71e-11 | 63.9 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.71e-11 | 63.9 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.71e-11 | 63.9 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.81e-11 | 63.5 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.81e-11 | 63.5 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.81e-11 | 63.5 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.81e-11 | 63.5 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.81e-11 | 63.5 |
| MsG0780039117.01.T01 | AT4G39270 | 33.721 | 172 | 111 | 2 | 35 | 206 | 94 | 262 | 1.93e-11 | 63.5 |
| MsG0780039117.01.T01 | AT4G08850 | 34.752 | 141 | 89 | 2 | 66 | 206 | 501 | 638 | 3.73e-11 | 62.8 |
| MsG0780039117.01.T01 | AT4G08850 | 34.752 | 141 | 89 | 2 | 66 | 206 | 501 | 638 | 4.00e-11 | 62.8 |
Find 45 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGACGTGGAAGACCATTT+AGG | 0.244814 | 7:+58199012 | None:intergenic |
| TTATGCAGGGTTGAATAATT+TGG | 0.246685 | 7:-58199909 | MsG0780039117.01.T01:intron |
| AATATTATTTCATCCCTAAA+TGG | 0.301362 | 7:-58199026 | MsG0780039117.01.T01:CDS |
| TATATCAAAACTAAGGTCTT+TGG | 0.310877 | 7:-58199084 | MsG0780039117.01.T01:CDS |
| GAGACGTGGAAGACCATTTA+GGG | 0.325733 | 7:+58199013 | None:intergenic |
| ATCTTTGAAGGAACTCCATT+TGG | 0.330502 | 7:-58199521 | MsG0780039117.01.T01:CDS |
| TATCAGCATTCTGTCTTGTT+TGG | 0.333685 | 7:-58199849 | MsG0780039117.01.T01:CDS |
| TTCAATGAAGTTGCTACATC+TGG | 0.345421 | 7:-58199608 | MsG0780039117.01.T01:CDS |
| ATGCAAGGACAGTAATATCT+AGG | 0.392346 | 7:+58198952 | None:intergenic |
| CCATTTGGATTGGATTGGAT+TGG | 0.399969 | 7:-58199506 | MsG0780039117.01.T01:CDS |
| AGCATTCTGTCTTGTTTGGA+TGG | 0.421623 | 7:-58199845 | MsG0780039117.01.T01:CDS |
| GAACTCCATTTGGATTGGAT+TGG | 0.424282 | 7:-58199511 | MsG0780039117.01.T01:CDS |
| AGTGTCTTTGAAGTTGTTGT+TGG | 0.427478 | 7:+58199298 | None:intergenic |
| TACTCTATGACTTCATTTCA+CGG | 0.437441 | 7:-58199785 | MsG0780039117.01.T01:intron |
| GATATTGCATCAGCTCTTAG+TGG | 0.442598 | 7:-58199275 | MsG0780039117.01.T01:CDS |
| TTGTAAATTCAAACTCTTGA+GGG | 0.444301 | 7:+58199244 | None:intergenic |
| TGAAGGAACTCCATTTGGAT+TGG | 0.452301 | 7:-58199516 | MsG0780039117.01.T01:CDS |
| CAGCGGATTCACATCTTTGA+AGG | 0.465120 | 7:-58199533 | MsG0780039117.01.T01:CDS |
| CATAGAGTACATAGCAGGTA+AGG | 0.479184 | 7:+58199799 | None:intergenic |
| CCAATCCAATCCAATCCAAA+TGG | 0.496880 | 7:+58199506 | None:intergenic |
| ATTGAATGCAACACCACCAC+TGG | 0.497018 | 7:-58200015 | None:intergenic |
| TAATTTGGAAGTTCTTCACT+TGG | 0.500946 | 7:-58199894 | MsG0780039117.01.T01:CDS |
| TCAAACTCTTGAGGGAAGAA+AGG | 0.501122 | 7:+58199252 | None:intergenic |
| TAGCTTCGCCGCTGCATGCA+AGG | 0.509883 | 7:+58198937 | None:intergenic |
| GGATTGGATTGGATTGGACT+CGG | 0.527154 | 7:-58199500 | MsG0780039117.01.T01:CDS |
| TTAAGTATCAACAACTTGCA+TGG | 0.532284 | 7:-58198978 | MsG0780039117.01.T01:CDS |
| TATTAGATATATCAAAACTA+AGG | 0.534942 | 7:-58199091 | MsG0780039117.01.T01:intron |
| AATTGTTGAAACTAATGTCA+AGG | 0.535895 | 7:+58199581 | None:intergenic |
| TTTGTAAATTCAAACTCTTG+AGG | 0.544827 | 7:+58199243 | None:intergenic |
| ATTGTTGAAACTAATGTCAA+GGG | 0.568424 | 7:+58199582 | None:intergenic |
| AACAGTTGTCACTCAAGTCA+AGG | 0.569892 | 7:+58199057 | None:intergenic |
| TGCAAGGACAGTAATATCTA+GGG | 0.574090 | 7:+58198953 | None:intergenic |
| AATGAAGTTGCTACATCTGG+AGG | 0.576012 | 7:-58199605 | MsG0780039117.01.T01:CDS |
| GAAGTCATAGAGTACATAGC+AGG | 0.577613 | 7:+58199794 | None:intergenic |
| AATTTGGAAGTTCTTCACTT+GGG | 0.579296 | 7:-58199893 | MsG0780039117.01.T01:CDS |
| TCAAGAGTTTGAATTTACAA+AGG | 0.583470 | 7:-58199241 | MsG0780039117.01.T01:CDS |
| TTTGGTGACTCTTCCAGTGG+TGG | 0.594419 | 7:+58200002 | None:intergenic |
| TGAATCCGCTGACTGATGGC+AGG | 0.597325 | 7:+58199545 | None:intergenic |
| AGTTGTTGTTGGAGATGTCA+AGG | 0.608673 | 7:+58199309 | None:intergenic |
| GATGTGAATCCGCTGACTGA+TGG | 0.637220 | 7:+58199541 | None:intergenic |
| GAGTTTGGTGACTCTTCCAG+TGG | 0.638376 | 7:+58199999 | None:intergenic |
| ATTACTGTCCTTGCATGCAG+CGG | 0.646001 | 7:-58198945 | MsG0780039117.01.T01:CDS |
| AAGTCAAGAGATTTGAGACG+TGG | 0.660772 | 7:+58198999 | None:intergenic |
| GAAATCCTGCCATCAGTCAG+CGG | 0.672334 | 7:-58199550 | MsG0780039117.01.T01:CDS |
| GATCTCAAGATTCTTCAATG+AGG | 0.693046 | 7:+58199331 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATGTAAATGATATTA+TGG | + | Chr7:58198965-58198984 | None:intergenic | 10.0% |
| !! | ATATTATTAATTATTATGCA+GGG | - | Chr7:58198978-58198997 | MsG0780039117.01.T01:CDS | 10.0% |
| !! | CTAAAAAAATTATTTGTATT+TGG | + | Chr7:58200009-58200028 | None:intergenic | 10.0% |
| !! | AAATACAATTATTGTATACA+AGG | - | Chr7:58199503-58199522 | MsG0780039117.01.T01:CDS | 15.0% |
| !! | CATATTATTAATTATTATGC+AGG | - | Chr7:58198977-58198996 | MsG0780039117.01.T01:CDS | 15.0% |
| !! | TATTAGATATATCAAAACTA+AGG | - | Chr7:58199809-58199828 | MsG0780039117.01.T01:CDS | 15.0% |
| !! | AATATTATTTCATCCCTAAA+TGG | - | Chr7:58199874-58199893 | MsG0780039117.01.T01:CDS | 20.0% |
| !! | ATATTATGGTTATTATGTCA+AGG | + | Chr7:58198951-58198970 | None:intergenic | 20.0% |
| ! | AATTGTTGAAACTAATGTCA+AGG | + | Chr7:58199322-58199341 | None:intergenic | 25.0% |
| ! | ATTGTTGAAACTAATGTCAA+GGG | + | Chr7:58199321-58199340 | None:intergenic | 25.0% |
| ! | TATATCAAAACTAAGGTCTT+TGG | - | Chr7:58199816-58199835 | MsG0780039117.01.T01:CDS | 25.0% |
| ! | TCAAGAGTTTGAATTTACAA+AGG | - | Chr7:58199659-58199678 | MsG0780039117.01.T01:intron | 25.0% |
| ! | TTAAGAAAGAAAACTATAGC+TGG | + | Chr7:58199151-58199170 | None:intergenic | 25.0% |
| ! | TTGTAAATTCAAACTCTTGA+GGG | + | Chr7:58199659-58199678 | None:intergenic | 25.0% |
| ! | TTTGTAAATTCAAACTCTTG+AGG | + | Chr7:58199660-58199679 | None:intergenic | 25.0% |
| AATTTGGAAGTTCTTCACTT+GGG | - | Chr7:58199007-58199026 | MsG0780039117.01.T01:CDS | 30.0% | |
| CATAACAGTCTGAAAATCTA+TGG | + | Chr7:58199264-58199283 | None:intergenic | 30.0% | |
| TAATTTGGAAGTTCTTCACT+TGG | - | Chr7:58199006-58199025 | MsG0780039117.01.T01:CDS | 30.0% | |
| TACTCTATGACTTCATTTCA+CGG | - | Chr7:58199115-58199134 | MsG0780039117.01.T01:intron | 30.0% | |
| TCTAAATATATGAGACAAGC+AGG | + | Chr7:58199468-58199487 | None:intergenic | 30.0% | |
| TTAAGTATCAACAACTTGCA+TGG | - | Chr7:58199922-58199941 | MsG0780039117.01.T01:intron | 30.0% | |
| TTATGCAGGGTTGAATAATT+TGG | - | Chr7:58198991-58199010 | MsG0780039117.01.T01:CDS | 30.0% | |
| ! | AAGCTAGAGAAATTTTTACG+AGG | - | Chr7:58199980-58199999 | MsG0780039117.01.T01:intron | 30.0% |
| ! | AGCTAGAGAAATTTTTACGA+GGG | - | Chr7:58199981-58200000 | MsG0780039117.01.T01:intron | 30.0% |
| ! | CATAGATTTTCAGACTGTTA+TGG | - | Chr7:58199262-58199281 | MsG0780039117.01.T01:CDS | 30.0% |
| ATGCAAGGACAGTAATATCT+AGG | + | Chr7:58199951-58199970 | None:intergenic | 35.0% | |
| GATCTCAAGATTCTTCAATG+AGG | + | Chr7:58199572-58199591 | None:intergenic | 35.0% | |
| TGCAAGGACAGTAATATCTA+GGG | + | Chr7:58199950-58199969 | None:intergenic | 35.0% | |
| TTCAATGAAGTTGCTACATC+TGG | - | Chr7:58199292-58199311 | MsG0780039117.01.T01:CDS | 35.0% | |
| ! | ATCTTTGAAGGAACTCCATT+TGG | - | Chr7:58199379-58199398 | MsG0780039117.01.T01:intron | 35.0% |
| ! | CTAGAGAAATTTTTACGAGG+GGG | - | Chr7:58199983-58200002 | MsG0780039117.01.T01:intron | 35.0% |
| ! | GCTAGAGAAATTTTTACGAG+GGG | - | Chr7:58199982-58200001 | MsG0780039117.01.T01:intron | 35.0% |
| ! | TATCAGCATTCTGTCTTGTT+TGG | - | Chr7:58199051-58199070 | MsG0780039117.01.T01:CDS | 35.0% |
| !! | AGTGTCTTTGAAGTTGTTGT+TGG | + | Chr7:58199605-58199624 | None:intergenic | 35.0% |
| AAAGAAAACTATAGCTGGCC+TGG | + | Chr7:58199146-58199165 | None:intergenic | 40.0% | |
| AACAGTTGTCACTCAAGTCA+AGG | + | Chr7:58199846-58199865 | None:intergenic | 40.0% | |
| AATGAAGTTGCTACATCTGG+AGG | - | Chr7:58199295-58199314 | MsG0780039117.01.T01:CDS | 40.0% | |
| ATGGGGTAGAAGAATGAGTT+TGG | + | Chr7:58198919-58198938 | None:intergenic | 40.0% | |
| ATGTCAAGGTCCTTCGATAT+GGG | + | Chr7:58198937-58198956 | None:intergenic | 40.0% | |
| ATTCTTCTACCCCATATCGA+AGG | - | Chr7:58198924-58198943 | MsG0780039117.01.T01:CDS | 40.0% | |
| CATAGAGTACATAGCAGGTA+AGG | + | Chr7:58199104-58199123 | None:intergenic | 40.0% | |
| CCAATCCAATCCAATCCAAA+TGG | + | Chr7:58199397-58199416 | None:intergenic | 40.0% | |
| GAAGTCATAGAGTACATAGC+AGG | + | Chr7:58199109-58199128 | None:intergenic | 40.0% | |
| GATATTGCATCAGCTCTTAG+TGG | - | Chr7:58199625-58199644 | MsG0780039117.01.T01:CDS | 40.0% | |
| TATGACTTCATTTCACGGTG+AGG | - | Chr7:58199120-58199139 | MsG0780039117.01.T01:intron | 40.0% | |
| TATGTCAAGGTCCTTCGATA+TGG | + | Chr7:58198938-58198957 | None:intergenic | 40.0% | |
| TCAAACTCTTGAGGGAAGAA+AGG | + | Chr7:58199651-58199670 | None:intergenic | 40.0% | |
| TGAAGGAACTCCATTTGGAT+TGG | - | Chr7:58199384-58199403 | MsG0780039117.01.T01:intron | 40.0% | |
| ! | AAGTCAAGAGATTTGAGACG+TGG | + | Chr7:58199904-58199923 | None:intergenic | 40.0% |
| ! | AGTTGTTGTTGGAGATGTCA+AGG | + | Chr7:58199594-58199613 | None:intergenic | 40.0% |
| ! | CCATTTGGATTGGATTGGAT+TGG | - | Chr7:58199394-58199413 | MsG0780039117.01.T01:intron | 40.0% |
| ! | GAACTCCATTTGGATTGGAT+TGG | - | Chr7:58199389-58199408 | MsG0780039117.01.T01:intron | 40.0% |
| ! | GACTCGGATCTTCATTTTCA+AGG | - | Chr7:58199416-58199435 | MsG0780039117.01.T01:intron | 40.0% |
| !! | AGCATTCTGTCTTGTTTGGA+TGG | - | Chr7:58199055-58199074 | MsG0780039117.01.T01:CDS | 40.0% |
| ATTACTGTCCTTGCATGCAG+CGG | - | Chr7:58199955-58199974 | MsG0780039117.01.T01:intron | 45.0% | |
| GAGACGTGGAAGACCATTTA+GGG | + | Chr7:58199890-58199909 | None:intergenic | 45.0% | |
| TGAGACGTGGAAGACCATTT+AGG | + | Chr7:58199891-58199910 | None:intergenic | 45.0% | |
| TGTCAAGGTCCTTCGATATG+GGG | + | Chr7:58198936-58198955 | None:intergenic | 45.0% | |
| ! | CAGCGGATTCACATCTTTGA+AGG | - | Chr7:58199367-58199386 | MsG0780039117.01.T01:intron | 45.0% |
| ! | GGATTGGATTGGATTGGACT+CGG | - | Chr7:58199400-58199419 | MsG0780039117.01.T01:intron | 45.0% |
| GAAATCCTGCCATCAGTCAG+CGG | - | Chr7:58199350-58199369 | MsG0780039117.01.T01:intron | 50.0% | |
| ! | GAGTTTGGTGACTCTTCCAG+TGG | + | Chr7:58198904-58198923 | None:intergenic | 50.0% |
| ! | GATGTGAATCCGCTGACTGA+TGG | + | Chr7:58199362-58199381 | None:intergenic | 50.0% |
| ! | TTTGGTGACTCTTCCAGTGG+TGG | + | Chr7:58198901-58198920 | None:intergenic | 50.0% |
| CTTCATTTCACGGTGAGGCC+AGG | - | Chr7:58199125-58199144 | MsG0780039117.01.T01:intron | 55.0% | |
| ! | TGAATCCGCTGACTGATGGC+AGG | + | Chr7:58199358-58199377 | None:intergenic | 55.0% |
| TAGCTTCGCCGCTGCATGCA+AGG | + | Chr7:58199966-58199985 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 58198890 | 58200032 | 58198890 | ID=MsG0780039117.01;Name=MsG0780039117.01 |
| Chr7 | mRNA | 58198890 | 58200032 | 58198890 | ID=MsG0780039117.01.T01;Parent=MsG0780039117.01;Name=MsG0780039117.01.T01;_AED=0.52;_eAED=0.53;_QI=0|0.75|0.4|1|0.75|0.8|5|0|232 |
| Chr7 | exon | 58200011 | 58200032 | 58200011 | ID=MsG0780039117.01.T01:exon:6657;Parent=MsG0780039117.01.T01 |
| Chr7 | exon | 58199786 | 58199923 | 58199786 | ID=MsG0780039117.01.T01:exon:6656;Parent=MsG0780039117.01.T01 |
| Chr7 | exon | 58199485 | 58199655 | 58199485 | ID=MsG0780039117.01.T01:exon:6655;Parent=MsG0780039117.01.T01 |
| Chr7 | exon | 58199213 | 58199362 | 58199213 | ID=MsG0780039117.01.T01:exon:6654;Parent=MsG0780039117.01.T01 |
| Chr7 | exon | 58198890 | 58199107 | 58198890 | ID=MsG0780039117.01.T01:exon:6653;Parent=MsG0780039117.01.T01 |
| Chr7 | CDS | 58200011 | 58200032 | 58200011 | ID=MsG0780039117.01.T01:cds;Parent=MsG0780039117.01.T01 |
| Chr7 | CDS | 58199786 | 58199923 | 58199786 | ID=MsG0780039117.01.T01:cds;Parent=MsG0780039117.01.T01 |
| Chr7 | CDS | 58199485 | 58199655 | 58199485 | ID=MsG0780039117.01.T01:cds;Parent=MsG0780039117.01.T01 |
| Chr7 | CDS | 58199213 | 58199362 | 58199213 | ID=MsG0780039117.01.T01:cds;Parent=MsG0780039117.01.T01 |
| Chr7 | CDS | 58198890 | 58199107 | 58198890 | ID=MsG0780039117.01.T01:cds;Parent=MsG0780039117.01.T01 |
| Gene Sequence |
| Protein sequence |
