Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040239.01.T01 | ABD28533.1 | 93.814 | 97 | 6 | 0 | 10 | 106 | 326 | 422 | 5.86E-57 | 191 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040239.01.T01 | Q9SRV1 | 60.227 | 88 | 28 | 4 | 10 | 92 | 355 | 440 | 5.80E-22 | 92 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040239.01.T01 | Q2HVB4 | 93.814 | 97 | 6 | 0 | 10 | 106 | 326 | 422 | 2.80e-57 | 191 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000743.01 | MsG0780040239.01 | 0.813534 | 2.438614e-51 | 1.596715e-48 |
MsG0280006407.01 | MsG0780040239.01 | 0.826333 | 2.872833e-54 | 2.686181e-51 |
MsG0780040239.01 | MsG0880046375.01 | 0.849363 | 3.393758e-60 | 6.418594e-57 |
MsG0680033745.01 | MsG0780040239.01 | 0.820817 | 5.612968e-53 | 4.488285e-50 |
MsG0480021451.01 | MsG0780040239.01 | 0.803532 | 3.333200e-49 | 1.679126e-46 |
MsG0480022795.01 | MsG0780040239.01 | 0.838754 | 2.382742e-57 | 3.222281e-54 |
MsG0580024265.01 | MsG0780040239.01 | 0.821328 | 4.279682e-53 | 3.471229e-50 |
MsG0580025567.01 | MsG0780040239.01 | 0.802666 | 5.035092e-49 | 2.480686e-46 |
MsG0380017429.01 | MsG0780040239.01 | 0.811865 | 5.653687e-51 | 3.539330e-48 |
MsG0280006544.01 | MsG0780040239.01 | 0.817958 | 2.516955e-52 | 1.859244e-49 |
MsG0280007058.01 | MsG0780040239.01 | -0.816409 | 5.613371e-52 | 3.974272e-49 |
MsG0780039844.01 | MsG0780040239.01 | 0.853366 | 2.505244e-61 | 5.400191e-58 |
MsG0780040205.01 | MsG0780040239.01 | 0.822908 | 1.841768e-53 | 1.562311e-50 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040239.01.T01 | MTR_7g086500 | 93.814 | 97 | 6 | 0 | 10 | 106 | 326 | 422 | 7.10e-61 | 191 |
MsG0780040239.01.T01 | MTR_5g087500 | 64.516 | 62 | 19 | 2 | 17 | 76 | 346 | 406 | 2.47e-17 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040239.01.T01 | AT3G03740 | 60.227 | 88 | 28 | 4 | 10 | 92 | 355 | 440 | 5.91e-23 | 92.0 |
MsG0780040239.01.T01 | AT5G21010 | 50.704 | 71 | 32 | 2 | 10 | 77 | 339 | 409 | 4.85e-14 | 66.6 |
MsG0780040239.01.T01 | AT3G43700 | 56.522 | 69 | 29 | 1 | 10 | 77 | 346 | 414 | 3.68e-13 | 64.3 |
Find 52 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGAAAGAGGTCAGAATTTA+TGG | 0.115156 | 7:+74788912 | MsG0780040239.01.T01:CDS |
AGCACAAATATAACCGAAAC+TGG | 0.272625 | 7:-74788470 | None:intergenic |
GCTTCCATTCCTTGTTAGTT+AGG | 0.299694 | 7:+74788997 | MsG0780040239.01.T01:three_prime_UTR |
ACAACAATAAGTCCCCTATT+TGG | 0.318709 | 7:+74789050 | MsG0780040239.01.T01:three_prime_UTR |
GAACTGCTTAAGACAGTTGC+AGG | 0.373384 | 7:+74788776 | MsG0780040239.01.T01:CDS |
TTATCATGAAGAACTGGTAT+TGG | 0.380537 | 7:+74789246 | MsG0780040239.01.T01:three_prime_UTR |
TTTACTCAGCCACCCAGTTT+CGG | 0.407255 | 7:+74788457 | MsG0780040239.01.T01:CDS |
GTTAACAATGATCGGAGTCC+AGG | 0.414751 | 7:+74788953 | MsG0780040239.01.T01:CDS |
CAGTGTTATTGTATGATACT+TGG | 0.428764 | 7:+74789331 | MsG0780040239.01.T01:three_prime_UTR |
TCTCACCGCCATCAGAAACT+TGG | 0.440673 | 7:-74788847 | None:intergenic |
GAAGAGGAATTTAGTGGTGA+AGG | 0.446576 | 7:+74788803 | MsG0780040239.01.T01:CDS |
CTTTGTCAAGCTTCTTGCCC+TGG | 0.454027 | 7:-74788971 | None:intergenic |
GGAAAGAGGTCAGAATTTAT+GGG | 0.458484 | 7:+74788913 | MsG0780040239.01.T01:CDS |
AGTACATTATCATGAAGAAC+TGG | 0.478754 | 7:+74789240 | MsG0780040239.01.T01:three_prime_UTR |
GGAGGAGAAGAGGAATTTAG+TGG | 0.493229 | 7:+74788797 | MsG0780040239.01.T01:CDS |
TAATGACGTTGACCATTGTA+TGG | 0.495346 | 7:+74789207 | MsG0780040239.01.T01:three_prime_UTR |
GGAGCGTAAGACAACAAACC+TGG | 0.498999 | 7:+74788879 | MsG0780040239.01.T01:CDS |
ACTTATTGTTGTCTCTGCAA+TGG | 0.499509 | 7:-74789039 | None:intergenic |
TATGGGTTAACCTTTCTGAT+GGG | 0.500710 | 7:+74788930 | MsG0780040239.01.T01:CDS |
TTATGGGTTAACCTTTCTGA+TGG | 0.503157 | 7:+74788929 | MsG0780040239.01.T01:CDS |
GACAGTTGCAGGAGGAGAAG+AGG | 0.506949 | 7:+74788787 | MsG0780040239.01.T01:CDS |
AGACAACAAACCTGGGAAAA+CGG | 0.507515 | 7:+74788887 | MsG0780040239.01.T01:CDS |
TCCCCTATTTGGATGGAGAA+GGG | 0.511286 | 7:+74789061 | MsG0780040239.01.T01:three_prime_UTR |
CTGATGGGGTTAACAATGAT+CGG | 0.515537 | 7:+74788945 | MsG0780040239.01.T01:CDS |
CCCTATTTGGATGGAGAAGG+GGG | 0.515796 | 7:+74789063 | MsG0780040239.01.T01:three_prime_UTR |
AGCAGTTCTGATTGCAGCAA+CGG | 0.520365 | 7:-74788761 | None:intergenic |
CATTGTTAACCCCATCAGAA+AGG | 0.531460 | 7:-74788940 | None:intergenic |
ATGGCGGTGAGACTAATGAT+AGG | 0.534143 | 7:+74788858 | MsG0780040239.01.T01:CDS |
CAATAAGTCCCCTATTTGGA+TGG | 0.544340 | 7:+74789054 | MsG0780040239.01.T01:three_prime_UTR |
TGAGCCTAACTAACAAGGAA+TGG | 0.554452 | 7:-74789001 | None:intergenic |
GTCCCCTATTTGGATGGAGA+AGG | 0.556183 | 7:+74789060 | MsG0780040239.01.T01:three_prime_UTR |
CCCCTATTTGGATGGAGAAG+GGG | 0.558138 | 7:+74789062 | MsG0780040239.01.T01:three_prime_UTR |
ATGGGTTAACCTTTCTGATG+GGG | 0.571543 | 7:+74788931 | MsG0780040239.01.T01:CDS |
CCCCTTCTCCATCCAAATAG+GGG | 0.577465 | 7:-74789062 | None:intergenic |
TGGGAAAACGGAGTGGAAAG+AGG | 0.577776 | 7:+74788899 | MsG0780040239.01.T01:CDS |
AAACTTGGGCCCACACACTT+CGG | 0.579983 | 7:-74788832 | None:intergenic |
CTCACCGCCATCAGAAACTT+GGG | 0.588896 | 7:-74788846 | None:intergenic |
AAGGAAAATGCCGAAGTGTG+TGG | 0.618132 | 7:+74788822 | MsG0780040239.01.T01:CDS |
AGGAAAATGCCGAAGTGTGT+GGG | 0.626396 | 7:+74788823 | MsG0780040239.01.T01:CDS |
GTGTGGGCCCAAGTTTCTGA+TGG | 0.628006 | 7:+74788839 | MsG0780040239.01.T01:CDS |
TTAACAATGATCGGAGTCCA+GGG | 0.628068 | 7:+74788954 | MsG0780040239.01.T01:CDS |
ATATTTGAGCCTAACTAACA+AGG | 0.632982 | 7:-74789006 | None:intergenic |
CTAGACAAGCTTCCATACAA+TGG | 0.644239 | 7:-74789219 | None:intergenic |
GCAGCTGTGATGCAATCTGA+TGG | 0.647750 | 7:+74788713 | MsG0780040239.01.T01:intron |
ATATGATTACAAGGATTGAG+TGG | 0.648757 | 7:+74789174 | MsG0780040239.01.T01:three_prime_UTR |
CTGCTTAAGACAGTTGCAGG+AGG | 0.656751 | 7:+74788779 | MsG0780040239.01.T01:CDS |
GAGCGTAAGACAACAAACCT+GGG | 0.672742 | 7:+74788880 | MsG0780040239.01.T01:CDS |
CAAATATAACCGAAACTGGG+TGG | 0.684849 | 7:-74788466 | None:intergenic |
CCTATTTGGATGGAGAAGGG+GGG | 0.687481 | 7:+74789064 | MsG0780040239.01.T01:three_prime_UTR |
GCACAAATATAACCGAAACT+GGG | 0.688789 | 7:-74788469 | None:intergenic |
TGGGCCCAAGTTTCTGATGG+CGG | 0.690246 | 7:+74788842 | MsG0780040239.01.T01:CDS |
ACAAACCTGGGAAAACGGAG+TGG | 0.690303 | 7:+74788892 | MsG0780040239.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTGATTATATGATTACA+AGG | + | Chr7:74789165-74789184 | MsG0780040239.01.T01:three_prime_UTR | 15.0% |
!! | AATCAAAAGAAAAACAACAA+TGG | - | Chr7:74789147-74789166 | None:intergenic | 20.0% |
!! | ATGCAAAACAATGTAAAAAA+AGG | + | Chr7:74789091-74789110 | MsG0780040239.01.T01:three_prime_UTR | 20.0% |
!!! | GTTTCTTAAAGAATATTTTC+AGG | + | Chr7:74789285-74789304 | MsG0780040239.01.T01:three_prime_UTR | 20.0% |
! | AAGATAAACAGATATTATCC+AGG | - | Chr7:74788582-74788601 | None:intergenic | 25.0% |
! | AATCAATTGTTATACAACTG+AGG | - | Chr7:74788661-74788680 | None:intergenic | 25.0% |
! | ATCAATTGTTATACAACTGA+GGG | - | Chr7:74788660-74788679 | None:intergenic | 25.0% |
! | CAAAACAATGTAAAAAAAGG+AGG | + | Chr7:74789094-74789113 | MsG0780040239.01.T01:three_prime_UTR | 25.0% |
AGTACATTATCATGAAGAAC+TGG | + | Chr7:74789240-74789259 | MsG0780040239.01.T01:three_prime_UTR | 30.0% | |
ATATGATTACAAGGATTGAG+TGG | + | Chr7:74789174-74789193 | MsG0780040239.01.T01:three_prime_UTR | 30.0% | |
ATATTTGAGCCTAACTAACA+AGG | - | Chr7:74789009-74789028 | None:intergenic | 30.0% | |
TTATCATGAAGAACTGGTAT+TGG | + | Chr7:74789246-74789265 | MsG0780040239.01.T01:three_prime_UTR | 30.0% | |
! | AACATTCTTTCTTCCGTTTT+TGG | - | Chr7:74788439-74788458 | None:intergenic | 30.0% |
! | CAGTGTTATTGTATGATACT+TGG | + | Chr7:74789331-74789350 | MsG0780040239.01.T01:three_prime_UTR | 30.0% |
! | TCTGTGATTTTCATTTTCAG+TGG | + | Chr7:74788601-74788620 | MsG0780040239.01.T01:intron | 30.0% |
!! | TTGGTTGTTTCCTGATTTTT+AGG | - | Chr7:74788630-74788649 | None:intergenic | 30.0% |
AACAGATATTATCCAGGATG+AGG | - | Chr7:74788576-74788595 | None:intergenic | 35.0% | |
ACAACAATAAGTCCCCTATT+TGG | + | Chr7:74789050-74789069 | MsG0780040239.01.T01:three_prime_UTR | 35.0% | |
ACTTATTGTTGTCTCTGCAA+TGG | - | Chr7:74789042-74789061 | None:intergenic | 35.0% | |
AGCACAAATATAACCGAAAC+TGG | - | Chr7:74788473-74788492 | None:intergenic | 35.0% | |
CACAATTGATAAGTCTACAG+AGG | - | Chr7:74788517-74788536 | None:intergenic | 35.0% | |
GCACAAATATAACCGAAACT+GGG | - | Chr7:74788472-74788491 | None:intergenic | 35.0% | |
GGAAAGAGGTCAGAATTTAT+GGG | + | Chr7:74788913-74788932 | MsG0780040239.01.T01:CDS | 35.0% | |
TAATGACGTTGACCATTGTA+TGG | + | Chr7:74789207-74789226 | MsG0780040239.01.T01:three_prime_UTR | 35.0% | |
TGGAAAGAGGTCAGAATTTA+TGG | + | Chr7:74788912-74788931 | MsG0780040239.01.T01:CDS | 35.0% | |
! | TATGGGTTAACCTTTCTGAT+GGG | + | Chr7:74788930-74788949 | MsG0780040239.01.T01:CDS | 35.0% |
! | TTATGGGTTAACCTTTCTGA+TGG | + | Chr7:74788929-74788948 | MsG0780040239.01.T01:CDS | 35.0% |
!! | GCACTTCCAATATTTTTCAG+CGG | + | Chr7:74788548-74788567 | MsG0780040239.01.T01:intron | 35.0% |
!!! | CAACAATGGTTTTGTTACAG+TGG | - | Chr7:74789133-74789152 | None:intergenic | 35.0% |
AGACAACAAACCTGGGAAAA+CGG | + | Chr7:74788887-74788906 | MsG0780040239.01.T01:CDS | 40.0% | |
CAAATATAACCGAAACTGGG+TGG | - | Chr7:74788469-74788488 | None:intergenic | 40.0% | |
CAATAAGTCCCCTATTTGGA+TGG | + | Chr7:74789054-74789073 | MsG0780040239.01.T01:three_prime_UTR | 40.0% | |
CATTGTTAACCCCATCAGAA+AGG | - | Chr7:74788943-74788962 | None:intergenic | 40.0% | |
CTAGACAAGCTTCCATACAA+TGG | - | Chr7:74789222-74789241 | None:intergenic | 40.0% | |
CTGATGGGGTTAACAATGAT+CGG | + | Chr7:74788945-74788964 | MsG0780040239.01.T01:CDS | 40.0% | |
GAAGAGGAATTTAGTGGTGA+AGG | + | Chr7:74788803-74788822 | MsG0780040239.01.T01:CDS | 40.0% | |
GCTTCCATTCCTTGTTAGTT+AGG | + | Chr7:74788997-74789016 | MsG0780040239.01.T01:three_prime_UTR | 40.0% | |
TCAGTGGTTGCCTAAAAATC+AGG | + | Chr7:74788617-74788636 | MsG0780040239.01.T01:intron | 40.0% | |
TGAGCCTAACTAACAAGGAA+TGG | - | Chr7:74789004-74789023 | None:intergenic | 40.0% | |
TTAACAATGATCGGAGTCCA+GGG | + | Chr7:74788954-74788973 | MsG0780040239.01.T01:CDS | 40.0% | |
! | ATGGGTTAACCTTTCTGATG+GGG | + | Chr7:74788931-74788950 | MsG0780040239.01.T01:CDS | 40.0% |
!!! | CAATGGTTTTGTTACAGTGG+TGG | - | Chr7:74789130-74789149 | None:intergenic | 40.0% |
AAGGAAAATGCCGAAGTGTG+TGG | + | Chr7:74788822-74788841 | MsG0780040239.01.T01:CDS | 45.0% | |
AGGAAAATGCCGAAGTGTGT+GGG | + | Chr7:74788823-74788842 | MsG0780040239.01.T01:CDS | 45.0% | |
ATGGCGGTGAGACTAATGAT+AGG | + | Chr7:74788858-74788877 | MsG0780040239.01.T01:CDS | 45.0% | |
GAACTGCTTAAGACAGTTGC+AGG | + | Chr7:74788776-74788795 | MsG0780040239.01.T01:CDS | 45.0% | |
GAGCGTAAGACAACAAACCT+GGG | + | Chr7:74788880-74788899 | MsG0780040239.01.T01:CDS | 45.0% | |
GGAGGAGAAGAGGAATTTAG+TGG | + | Chr7:74788797-74788816 | MsG0780040239.01.T01:CDS | 45.0% | |
GTTAACAATGATCGGAGTCC+AGG | + | Chr7:74788953-74788972 | MsG0780040239.01.T01:CDS | 45.0% | |
TACAACTGAGGGACACTACT+TGG | - | Chr7:74788649-74788668 | None:intergenic | 45.0% | |
TCCCCTATTTGGATGGAGAA+GGG | + | Chr7:74789061-74789080 | MsG0780040239.01.T01:three_prime_UTR | 45.0% | |
TTTACTCAGCCACCCAGTTT+CGG | + | Chr7:74788457-74788476 | MsG0780040239.01.T01:CDS | 45.0% | |
! | AGCAGTTCTGATTGCAGCAA+CGG | - | Chr7:74788764-74788783 | None:intergenic | 45.0% |
!! | GAGGTGCCGCTGAAAAATAT+TGG | - | Chr7:74788557-74788576 | None:intergenic | 45.0% |
!! | TTCTTCCGTTTTTGGACCCA+TGG | - | Chr7:74788431-74788450 | None:intergenic | 45.0% |
AAACTTGGGCCCACACACTT+CGG | - | Chr7:74788835-74788854 | None:intergenic | 50.0% | |
ACAAACCTGGGAAAACGGAG+TGG | + | Chr7:74788892-74788911 | MsG0780040239.01.T01:CDS | 50.0% | |
CCCCCTTCTCCATCCAAATA+GGG | - | Chr7:74789066-74789085 | None:intergenic | 50.0% | |
CCCCTATTTGGATGGAGAAG+GGG | + | Chr7:74789062-74789081 | MsG0780040239.01.T01:three_prime_UTR | 50.0% | |
CCCCTTCTCCATCCAAATAG+GGG | - | Chr7:74789065-74789084 | None:intergenic | 50.0% | |
CCCTATTTGGATGGAGAAGG+GGG | + | Chr7:74789063-74789082 | MsG0780040239.01.T01:three_prime_UTR | 50.0% | |
CCTATTTGGATGGAGAAGGG+GGG | + | Chr7:74789064-74789083 | MsG0780040239.01.T01:three_prime_UTR | 50.0% | |
CTCACCGCCATCAGAAACTT+GGG | - | Chr7:74788849-74788868 | None:intergenic | 50.0% | |
CTGCTTAAGACAGTTGCAGG+AGG | + | Chr7:74788779-74788798 | MsG0780040239.01.T01:CDS | 50.0% | |
CTTTGTCAAGCTTCTTGCCC+TGG | - | Chr7:74788974-74788993 | None:intergenic | 50.0% | |
GCAGCTGTGATGCAATCTGA+TGG | + | Chr7:74788713-74788732 | MsG0780040239.01.T01:intron | 50.0% | |
GGAGCGTAAGACAACAAACC+TGG | + | Chr7:74788879-74788898 | MsG0780040239.01.T01:CDS | 50.0% | |
GTCCCCTATTTGGATGGAGA+AGG | + | Chr7:74789060-74789079 | MsG0780040239.01.T01:three_prime_UTR | 50.0% | |
TCTCACCGCCATCAGAAACT+TGG | - | Chr7:74788850-74788869 | None:intergenic | 50.0% | |
TGGGAAAACGGAGTGGAAAG+AGG | + | Chr7:74788899-74788918 | MsG0780040239.01.T01:CDS | 50.0% | |
! | TCTTTCCACTCCGTTTTCCC+AGG | - | Chr7:74788900-74788919 | None:intergenic | 50.0% |
ATTTGGATGGAGAAGGGGGG+AGG | + | Chr7:74789067-74789086 | MsG0780040239.01.T01:three_prime_UTR | 55.0% | |
CCCCCCTTCTCCATCCAAAT+AGG | - | Chr7:74789067-74789086 | None:intergenic | 55.0% | |
GACAGTTGCAGGAGGAGAAG+AGG | + | Chr7:74788787-74788806 | MsG0780040239.01.T01:CDS | 55.0% | |
GTGTGGGCCCAAGTTTCTGA+TGG | + | Chr7:74788839-74788858 | MsG0780040239.01.T01:CDS | 55.0% | |
TGGGCCCAAGTTTCTGATGG+CGG | + | Chr7:74788842-74788861 | MsG0780040239.01.T01:CDS | 55.0% | |
! | TTTTCAGCGGCACCTCATCC+TGG | + | Chr7:74788561-74788580 | MsG0780040239.01.T01:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 74788430 | 74789390 | 74788430 | ID=MsG0780040239.01;Name=MsG0780040239.01 |
Chr7 | mRNA | 74788430 | 74789390 | 74788430 | ID=MsG0780040239.01.T01;Parent=MsG0780040239.01;Name=MsG0780040239.01.T01;_AED=0.47;_eAED=0.51;_QI=0|0|0.5|1|1|1|2|402|106 |
Chr7 | exon | 74788430 | 74788478 | 74788430 | ID=MsG0780040239.01.T01:exon:14600;Parent=MsG0780040239.01.T01 |
Chr7 | exon | 74788717 | 74789390 | 74788717 | ID=MsG0780040239.01.T01:exon:14601;Parent=MsG0780040239.01.T01 |
Chr7 | CDS | 74788430 | 74788478 | 74788430 | ID=MsG0780040239.01.T01:cds;Parent=MsG0780040239.01.T01 |
Chr7 | CDS | 74788717 | 74788988 | 74788717 | ID=MsG0780040239.01.T01:cds;Parent=MsG0780040239.01.T01 |
Chr7 | three_prime_UTR | 74788989 | 74789390 | 74788989 | ID=MsG0780040239.01.T01:three_prime_utr;Parent=MsG0780040239.01.T01 |
Gene Sequence |
Protein sequence |