Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024265.01.T02 | KOM27637.1 | 92.857 | 168 | 12 | 0 | 5 | 172 | 189 | 356 | 1.60E-112 | 334 |
| MsG0580024265.01.T01 | KOM27637.1 | 92.857 | 168 | 12 | 0 | 5 | 172 | 189 | 356 | 1.60E-112 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024265.01.T01 | Q9SMV6 | 88.095 | 168 | 20 | 0 | 5 | 172 | 908 | 1075 | 1.57E-99 | 312 |
| MsG0580024265.01.T02 | Q9SMV6 | 88.095 | 168 | 20 | 0 | 5 | 172 | 908 | 1075 | 1.57E-99 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024265.01.T01 | A0A0L9TAS6 | 92.857 | 168 | 12 | 0 | 5 | 172 | 189 | 356 | 7.62e-113 | 334 |
| MsG0580024265.01.T02 | G7K6H8 | 98.810 | 168 | 2 | 0 | 5 | 172 | 911 | 1078 | 1.60e-110 | 348 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002070.01 | MsG0580024265.01 | 0.800317 | 1.525427e-48 | 7.081251e-46 |
| MsG0180002460.01 | MsG0580024265.01 | 0.816108 | 6.555595e-52 | 4.603455e-49 |
| MsG0180003669.01 | MsG0580024265.01 | 0.814478 | 1.509570e-51 | 1.014055e-48 |
| MsG0180004463.01 | MsG0580024265.01 | 0.832773 | 7.808701e-56 | 8.815616e-53 |
| MsG0180005993.01 | MsG0580024265.01 | 0.815220 | 1.033588e-51 | 7.083082e-49 |
| MsG0280006375.01 | MsG0580024265.01 | 0.843293 | 1.531475e-58 | 2.385378e-55 |
| MsG0280006407.01 | MsG0580024265.01 | 0.854277 | 1.370027e-61 | 3.043912e-58 |
| MsG0280011446.01 | MsG0580024265.01 | 0.806108 | 9.654520e-50 | 5.196323e-47 |
| MsG0380013178.01 | MsG0580024265.01 | 0.809743 | 1.627473e-50 | 9.633511e-48 |
| MsG0380014173.01 | MsG0580024265.01 | 0.829647 | 4.580313e-55 | 4.716677e-52 |
| MsG0380014647.01 | MsG0580024265.01 | 0.802587 | 5.227840e-49 | 2.570565e-46 |
| MsG0480019125.01 | MsG0580024265.01 | 0.824051 | 9.949750e-54 | 8.716102e-51 |
| MsG0480020134.01 | MsG0580024265.01 | 0.801915 | 7.188272e-49 | 3.474548e-46 |
| MsG0480021136.01 | MsG0580024265.01 | 0.808740 | 2.670001e-50 | 1.538626e-47 |
| MsG0480021164.01 | MsG0580024265.01 | 0.816142 | 6.440677e-52 | 4.527008e-49 |
| MsG0480021215.01 | MsG0580024265.01 | 0.806106 | 9.663273e-50 | 5.200787e-47 |
| MsG0480022164.01 | MsG0580024265.01 | 0.805243 | 1.466836e-49 | 7.721349e-47 |
| MsG0480022222.01 | MsG0580024265.01 | 0.819279 | 1.262485e-52 | 9.671804e-50 |
| MsG0480022795.01 | MsG0580024265.01 | 0.872445 | 3.163858e-67 | 1.324351e-63 |
| MsG0480023707.01 | MsG0580024265.01 | 0.802289 | 6.020321e-49 | 2.937991e-46 |
| MsG0580024265.01 | MsG0580024779.01 | 0.803366 | 3.607763e-49 | 1.809548e-46 |
| MsG0580024265.01 | MsG0580024780.01 | 0.822467 | 2.332398e-53 | 1.953830e-50 |
| MsG0580024265.01 | MsG0580026070.01 | 0.811182 | 7.955480e-51 | 4.891362e-48 |
| MsG0580024265.01 | MsG0580027031.01 | 0.828151 | 1.054393e-54 | 1.039340e-51 |
| MsG0580024265.01 | MsG0580029826.01 | 0.818370 | 2.030987e-52 | 1.517534e-49 |
| MsG0580024265.01 | MsG0680033745.01 | 0.821332 | 4.271100e-53 | 3.464624e-50 |
| MsG0580024265.01 | MsG0780037919.01 | 0.812303 | 4.536581e-51 | 2.874032e-48 |
| MsG0580024265.01 | MsG0780040057.01 | 0.811777 | 5.909128e-51 | 3.690630e-48 |
| MsG0580024265.01 | MsG0780040239.01 | 0.821328 | 4.279682e-53 | 3.471229e-50 |
| MsG0580024265.01 | MsG0780040292.01 | 0.821284 | 4.381066e-53 | 3.548884e-50 |
| MsG0580024265.01 | MsG0780040604.01 | 0.847890 | 8.682376e-60 | 1.565596e-56 |
| MsG0580024265.01 | MsG0780041402.01 | 0.840358 | 9.122704e-58 | 1.296219e-54 |
| MsG0580024265.01 | MsG0780041456.01 | 0.805540 | 1.270818e-49 | 6.740687e-47 |
| MsG0580024265.01 | MsG0880042294.01 | 0.805978 | 1.028168e-49 | 5.515679e-47 |
| MsG0580024265.01 | MsG0880045736.01 | 0.811789 | 5.871950e-51 | 3.668603e-48 |
| MsG0580024265.01 | MsG0880045937.01 | 0.828765 | 7.492553e-55 | 7.517916e-52 |
| MsG0580024265.01 | MsG0880046375.01 | 0.826609 | 2.469288e-54 | 2.326970e-51 |
| MsG0380015164.01 | MsG0580024265.01 | 0.827273 | 1.713567e-54 | 1.646423e-51 |
| MsG0380016090.01 | MsG0580024265.01 | 0.815564 | 8.667066e-52 | 5.996179e-49 |
| MsG0380017680.01 | MsG0580024265.01 | 0.808084 | 3.684793e-50 | 2.087318e-47 |
| MsG0480018163.01 | MsG0580024265.01 | 0.800103 | 1.686364e-48 | 7.785541e-46 |
| MsG0480018401.01 | MsG0580024265.01 | 0.801603 | 8.330223e-49 | 3.994560e-46 |
| MsG0280007058.01 | MsG0580024265.01 | -0.828864 | 7.093486e-55 | 7.137757e-52 |
| MsG0280007088.01 | MsG0580024265.01 | 0.822245 | 2.625865e-53 | 2.185764e-50 |
| MsG0280009837.01 | MsG0580024265.01 | 0.815971 | 7.032929e-52 | 4.920188e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024265.01.T02 | MTR_5g007790 | 98.810 | 168 | 2 | 0 | 5 | 172 | 911 | 1078 | 4.06e-114 | 348 |
| MsG0580024265.01.T02 | MTR_4g077660 | 90.476 | 168 | 16 | 0 | 5 | 172 | 910 | 1077 | 5.94e-104 | 321 |
| MsG0580024265.01.T02 | MTR_8g013700 | 78.689 | 122 | 26 | 0 | 5 | 126 | 810 | 931 | 8.65e-60 | 199 |
| MsG0580024265.01.T01 | MTR_5g007790 | 98.810 | 168 | 2 | 0 | 5 | 172 | 911 | 1078 | 4.06e-114 | 348 |
| MsG0580024265.01.T01 | MTR_4g077660 | 90.476 | 168 | 16 | 0 | 5 | 172 | 910 | 1077 | 5.94e-104 | 321 |
| MsG0580024265.01.T01 | MTR_8g013700 | 78.689 | 122 | 26 | 0 | 5 | 126 | 810 | 931 | 8.65e-60 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024265.01.T02 | AT5G17020 | 88.095 | 168 | 20 | 0 | 5 | 172 | 893 | 1060 | 1.33e-100 | 312 |
| MsG0580024265.01.T02 | AT5G17020 | 88.095 | 168 | 20 | 0 | 5 | 172 | 908 | 1075 | 1.60e-100 | 312 |
| MsG0580024265.01.T02 | AT3G03110 | 80.952 | 168 | 32 | 0 | 5 | 172 | 909 | 1076 | 5.71e-92 | 289 |
| MsG0580024265.01.T01 | AT5G17020 | 88.095 | 168 | 20 | 0 | 5 | 172 | 893 | 1060 | 1.33e-100 | 312 |
| MsG0580024265.01.T01 | AT5G17020 | 88.095 | 168 | 20 | 0 | 5 | 172 | 908 | 1075 | 1.60e-100 | 312 |
| MsG0580024265.01.T01 | AT3G03110 | 80.952 | 168 | 32 | 0 | 5 | 172 | 909 | 1076 | 5.71e-92 | 289 |
Find 42 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATAATTGCAGTTTCTATA+TGG | 0.188294 | 5:+2743795 | MsG0580024265.01.T02:three_prime_UTR |
| AAGTCACCAATACTAGAAAT+TGG | 0.270374 | 5:-2743686 | None:intergenic |
| CAAGTCCCAACATGAAATAT+TGG | 0.270513 | 5:-2743522 | None:intergenic |
| CCATATAGAAACTGCAATTA+TGG | 0.271095 | 5:-2743795 | None:intergenic |
| ATTTCATCTTGCAACTCAAC+TGG | 0.312123 | 5:-2743344 | None:intergenic |
| GGCAATACCGCCTTGTCTAT+TGG | 0.318079 | 5:+2743579 | MsG0580024265.01.T01:three_prime_UTR |
| CAAAGAATGCTTTCTATTCC+AGG | 0.320623 | 5:+2743311 | MsG0580024265.01.T01:CDS |
| AACAAAACTATATAATAAAT+AGG | 0.337489 | 5:-2743487 | None:intergenic |
| TAATCAACATGAAAGTAAAT+AGG | 0.342809 | 5:+2743388 | MsG0580024265.01.T01:intron |
| CTCATCCTGTCATAATTCTA+TGG | 0.346866 | 5:-2743659 | None:intergenic |
| CATAATTGCAGTTTCTATAT+GGG | 0.356227 | 5:+2743796 | MsG0580024265.01.T02:three_prime_UTR |
| TCTTCCCAATATTTCATGTT+GGG | 0.371356 | 5:+2743517 | MsG0580024265.01.T01:intron |
| TGCACAATCCACCAGAGTTT+AGG | 0.385601 | 5:-2743709 | None:intergenic |
| ACATTAGTAAGTGTTTAGTC+AGG | 0.419176 | 5:+2743628 | MsG0580024265.01.T01:three_prime_UTR |
| AAGTCCCAACATGAAATATT+GGG | 0.423317 | 5:-2743521 | None:intergenic |
| GATTCCTGATTTCAGAGGTT+AGG | 0.428806 | 5:+2743554 | MsG0580024265.01.T01:intron |
| CCAGCCTAACCTCTGAAATC+AGG | 0.436670 | 5:-2743558 | None:intergenic |
| TTCTTCCCAATATTTCATGT+TGG | 0.449631 | 5:+2743516 | MsG0580024265.01.T01:intron |
| AGTGACCCAATTTCTAGTAT+TGG | 0.456048 | 5:+2743680 | MsG0580024265.01.T02:three_prime_UTR |
| TCTCTGAGCTGCAGCTTCTT+CGG | 0.456798 | 5:-2743276 | None:intergenic |
| GCATCTGTTCTCAAAGCATC+TGG | 0.462359 | 5:-2743456 | None:intergenic |
| AATGGTGGACTCATAGCTAT+AGG | 0.467062 | 5:+2743364 | MsG0580024265.01.T01:intron |
| AGTCACCAATACTAGAAATT+GGG | 0.480201 | 5:-2743685 | None:intergenic |
| TTTCATCTTGCAACTCAACT+GGG | 0.480367 | 5:-2743343 | None:intergenic |
| CCTGATTTCAGAGGTTAGGC+TGG | 0.493528 | 5:+2743558 | MsG0580024265.01.T01:intron |
| AGTTGAGTTGCAAGATGAAA+TGG | 0.499763 | 5:+2743346 | MsG0580024265.01.T01:CDS |
| TCAACTGGGGCAATAAGCCC+TGG | 0.502750 | 5:-2743329 | None:intergenic |
| AAAGAATGCTTTCTATTCCA+GGG | 0.532888 | 5:+2743312 | MsG0580024265.01.T01:CDS |
| ACAACAAAATATCAAACCAC+AGG | 0.538436 | 5:-2743739 | None:intergenic |
| ATTGGTGACTTCCTAAACTC+TGG | 0.564250 | 5:+2743698 | MsG0580024265.01.T02:three_prime_UTR |
| TTTATGGTATTGGTTTGTTG+CGG | 0.566374 | 5:+2743820 | MsG0580024265.01.T02:three_prime_UTR |
| CAATAGATTCCTGATTTCAG+AGG | 0.568813 | 5:+2743549 | MsG0580024265.01.T01:intron |
| GGTGACTTCCTAAACTCTGG+TGG | 0.581622 | 5:+2743701 | MsG0580024265.01.T02:three_prime_UTR |
| GCATTCCATAGAATTATGAC+AGG | 0.595976 | 5:+2743654 | MsG0580024265.01.T02:three_prime_UTR |
| CATTAGTAAGTGTTTAGTCA+GGG | 0.601271 | 5:+2743629 | MsG0580024265.01.T01:three_prime_UTR |
| CAACAAAATATCAAACCACA+GGG | 0.610610 | 5:-2743738 | None:intergenic |
| TTCATCTTGCAACTCAACTG+GGG | 0.620831 | 5:-2743342 | None:intergenic |
| CTACACTCAACCAATAGACA+AGG | 0.640387 | 5:-2743589 | None:intergenic |
| TGAGTTGCAAGATGAAATGG+TGG | 0.690213 | 5:+2743349 | MsG0580024265.01.T01:CDS |
| CACTCAACCAATAGACAAGG+CGG | 0.746356 | 5:-2743586 | None:intergenic |
| AACAAAATATCAAACCACAG+GGG | 0.799959 | 5:-2743737 | None:intergenic |
| GATTGTGCAGAAAACCCCTG+TGG | 0.812366 | 5:+2743723 | MsG0580024265.01.T02:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAACTATATAATAAAT+AGG | - | Chr5:2743490-2743509 | None:intergenic | 10.0% |
| !!! | AAAATGTTTAATAATGGATT+TGG | + | Chr5:2742674-2742693 | MsG0580024265.01.T01:intron | 15.0% |
| !! | AAAAAGACCATTAACAAATT+GGG | - | Chr5:2742926-2742945 | None:intergenic | 20.0% |
| !! | AGTGAGAAAATGTTTAATAA+TGG | + | Chr5:2742668-2742687 | MsG0580024265.01.T01:intron | 20.0% |
| !! | TAATCAACATGAAAGTAAAT+AGG | + | Chr5:2743388-2743407 | MsG0580024265.01.T01:intron | 20.0% |
| !!! | AGAAATTAAAAGCACAATAT+AGG | - | Chr5:2742641-2742660 | None:intergenic | 20.0% |
| !!! | GTAACATTGTTTTCAAATAA+AGG | + | Chr5:2743072-2743091 | MsG0580024265.01.T01:intron | 20.0% |
| !!! | TTGTTTTTTTGAACCATTTT+TGG | + | Chr5:2743037-2743056 | MsG0580024265.01.T01:intron | 20.0% |
| ! | CAAAAAGACCATTAACAAAT+TGG | - | Chr5:2742927-2742946 | None:intergenic | 25.0% |
| ! | CATAATTGCAGTTTCTATAT+GGG | + | Chr5:2743796-2743815 | MsG0580024265.01.T02:three_prime_UTR | 25.0% |
| !! | ACTAATTTCAAGAATTTTGC+AGG | + | Chr5:2742897-2742916 | MsG0580024265.01.T01:intron | 25.0% |
| !!! | AACATTTATTTTGTCTGGTA+CGG | + | Chr5:2742613-2742632 | MsG0580024265.01.T01:intron | 25.0% |
| AAAGAATGCTTTCTATTCCA+GGG | + | Chr5:2743312-2743331 | MsG0580024265.01.T01:CDS | 30.0% | |
| AACAAAATATCAAACCACAG+GGG | - | Chr5:2743740-2743759 | None:intergenic | 30.0% | |
| AAGTCACCAATACTAGAAAT+TGG | - | Chr5:2743689-2743708 | None:intergenic | 30.0% | |
| AAGTCCCAACATGAAATATT+GGG | - | Chr5:2743524-2743543 | None:intergenic | 30.0% | |
| ACAACAAAATATCAAACCAC+AGG | - | Chr5:2743742-2743761 | None:intergenic | 30.0% | |
| ACATTAGTAAGTGTTTAGTC+AGG | + | Chr5:2743628-2743647 | MsG0580024265.01.T01:three_prime_UTR | 30.0% | |
| AGTCACCAATACTAGAAATT+GGG | - | Chr5:2743688-2743707 | None:intergenic | 30.0% | |
| ATATATCATGCTACATTGTG+TGG | - | Chr5:2743178-2743197 | None:intergenic | 30.0% | |
| CAACAAAATATCAAACCACA+GGG | - | Chr5:2743741-2743760 | None:intergenic | 30.0% | |
| CATTAGTAAGTGTTTAGTCA+GGG | + | Chr5:2743629-2743648 | MsG0580024265.01.T01:three_prime_UTR | 30.0% | |
| CCATAATTGCAGTTTCTATA+TGG | + | Chr5:2743795-2743814 | MsG0580024265.01.T02:three_prime_UTR | 30.0% | |
| CCATATAGAAACTGCAATTA+TGG | - | Chr5:2743798-2743817 | None:intergenic | 30.0% | |
| CTTGAAATTAGTCATCATTC+AGG | - | Chr5:2742889-2742908 | None:intergenic | 30.0% | |
| CTTTCTCAAATAGCCAAAAA+TGG | - | Chr5:2743053-2743072 | None:intergenic | 30.0% | |
| GAACAAGTTAACAAACTTCA+AGG | - | Chr5:2743223-2743242 | None:intergenic | 30.0% | |
| TCTTCCCAATATTTCATGTT+GGG | + | Chr5:2743517-2743536 | MsG0580024265.01.T01:intron | 30.0% | |
| TTCTTCCCAATATTTCATGT+TGG | + | Chr5:2743516-2743535 | MsG0580024265.01.T01:intron | 30.0% | |
| ! | CAGTTTCTATATGGGTTTTA+TGG | + | Chr5:2743804-2743823 | MsG0580024265.01.T02:three_prime_UTR | 30.0% |
| !! | AGTTCTGCAATCAGTTTTAT+CGG | + | Chr5:2742499-2742518 | MsG0580024265.01.T01:CDS | 30.0% |
| !! | CTATATGGGTTTTATGGTAT+TGG | + | Chr5:2743810-2743829 | MsG0580024265.01.T02:three_prime_UTR | 30.0% |
| !! | TAATGGATTTGGTGTATTTC+AGG | + | Chr5:2742685-2742704 | MsG0580024265.01.T01:intron | 30.0% |
| !! | TTTATGGTATTGGTTTGTTG+CGG | + | Chr5:2743820-2743839 | MsG0580024265.01.T02:three_prime_UTR | 30.0% |
| !!! | GCTTCAACATTTATTTTGTC+TGG | + | Chr5:2742608-2742627 | MsG0580024265.01.T01:CDS | 30.0% |
| AAATTCTCGACAATAACTGC+TGG | + | Chr5:2743110-2743129 | MsG0580024265.01.T01:intron | 35.0% | |
| ATTAGTCATCATTCAGGCAA+AGG | - | Chr5:2742883-2742902 | None:intergenic | 35.0% | |
| ATTTCATCTTGCAACTCAAC+TGG | - | Chr5:2743347-2743366 | None:intergenic | 35.0% | |
| CAAAGAATGCTTTCTATTCC+AGG | + | Chr5:2743311-2743330 | MsG0580024265.01.T01:CDS | 35.0% | |
| CAAGTCCCAACATGAAATAT+TGG | - | Chr5:2743525-2743544 | None:intergenic | 35.0% | |
| CAATAGATTCCTGATTTCAG+AGG | + | Chr5:2743549-2743568 | MsG0580024265.01.T01:intron | 35.0% | |
| CACATTCAAAACTCACATAC+GGG | + | Chr5:2742966-2742985 | MsG0580024265.01.T01:CDS | 35.0% | |
| CCACATTCAAAACTCACATA+CGG | + | Chr5:2742965-2742984 | MsG0580024265.01.T01:CDS | 35.0% | |
| CTCATCCTGTCATAATTCTA+TGG | - | Chr5:2743662-2743681 | None:intergenic | 35.0% | |
| GCATTCCATAGAATTATGAC+AGG | + | Chr5:2743654-2743673 | MsG0580024265.01.T02:three_prime_UTR | 35.0% | |
| TTTCATCTTGCAACTCAACT+GGG | - | Chr5:2743346-2743365 | None:intergenic | 35.0% | |
| ! | ACAATAACTGCTGGTTACTT+TGG | + | Chr5:2743119-2743138 | MsG0580024265.01.T01:intron | 35.0% |
| ! | AGTTGAGTTGCAAGATGAAA+TGG | + | Chr5:2743346-2743365 | MsG0580024265.01.T01:CDS | 35.0% |
| ! | ATCAAAAGAGTTTTCAGCTC+AGG | + | Chr5:2743002-2743021 | MsG0580024265.01.T01:CDS | 35.0% |
| !! | AGTGACCCAATTTCTAGTAT+TGG | + | Chr5:2743680-2743699 | MsG0580024265.01.T02:three_prime_UTR | 35.0% |
| !! | CAGGTTACCCAATTTGTTAA+TGG | + | Chr5:2742916-2742935 | MsG0580024265.01.T01:intron | 35.0% |
| AAGACATGCAATTTGAACCC+AGG | - | Chr5:2742585-2742604 | None:intergenic | 40.0% | |
| ACTTGTTCTCTCTACATTGC+AGG | + | Chr5:2743235-2743254 | MsG0580024265.01.T01:intron | 40.0% | |
| CCATATCCATACCCAAGTAA+TGG | + | Chr5:2742755-2742774 | MsG0580024265.01.T01:CDS | 40.0% | |
| CCATTACTTGGGTATGGATA+TGG | - | Chr5:2742758-2742777 | None:intergenic | 40.0% | |
| CTACACTCAACCAATAGACA+AGG | - | Chr5:2743592-2743611 | None:intergenic | 40.0% | |
| GATTCCTGATTTCAGAGGTT+AGG | + | Chr5:2743554-2743573 | MsG0580024265.01.T01:intron | 40.0% | |
| GTGTGGTCAAATAAGTAACG+AGG | - | Chr5:2743161-2743180 | None:intergenic | 40.0% | |
| TGAGTTGCAAGATGAAATGG+TGG | + | Chr5:2743349-2743368 | MsG0580024265.01.T01:CDS | 40.0% | |
| TGGGTTCAAATTGCATGTCT+TGG | + | Chr5:2742584-2742603 | MsG0580024265.01.T01:CDS | 40.0% | |
| TTCATCTTGCAACTCAACTG+GGG | - | Chr5:2743345-2743364 | None:intergenic | 40.0% | |
| ! | AAAGCACCATTACTTGGGTA+TGG | - | Chr5:2742764-2742783 | None:intergenic | 40.0% |
| ! | ACAGACACTTTTCATAAGCC+TGG | + | Chr5:2742564-2742583 | MsG0580024265.01.T01:CDS | 40.0% |
| ! | ATTGGTGACTTCCTAAACTC+TGG | + | Chr5:2743698-2743717 | MsG0580024265.01.T02:three_prime_UTR | 40.0% |
| ! | CAGACACTTTTCATAAGCCT+GGG | + | Chr5:2742565-2742584 | MsG0580024265.01.T01:CDS | 40.0% |
| !! | AATGGTGGACTCATAGCTAT+AGG | + | Chr5:2743364-2743383 | MsG0580024265.01.T01:intron | 40.0% |
| !! | GCACAAAAGCACCATTACTT+GGG | - | Chr5:2742769-2742788 | None:intergenic | 40.0% |
| !!! | CCGTATGTGAGTTTTGAATG+TGG | - | Chr5:2742968-2742987 | None:intergenic | 40.0% |
| !!! | TGTGAGTTTTGAATGTGGAG+AGG | - | Chr5:2742963-2742982 | None:intergenic | 40.0% |
| AGTCATCATTCAGGCAAAGG+AGG | - | Chr5:2742880-2742899 | None:intergenic | 45.0% | |
| CACTCAACCAATAGACAAGG+CGG | - | Chr5:2743589-2743608 | None:intergenic | 45.0% | |
| GAATGTGGAGAGGTCATTTG+TGG | - | Chr5:2742953-2742972 | None:intergenic | 45.0% | |
| GGTGTATTTCAGGCTGAATC+TGG | + | Chr5:2742695-2742714 | MsG0580024265.01.T01:intron | 45.0% | |
| GTCATCATTCAGGCAAAGGA+GGG | - | Chr5:2742879-2742898 | None:intergenic | 45.0% | |
| TCATCATTCAGGCAAAGGAG+GGG | - | Chr5:2742878-2742897 | None:intergenic | 45.0% | |
| TGCACAATCCACCAGAGTTT+AGG | - | Chr5:2743712-2743731 | None:intergenic | 45.0% | |
| TTTGTAGCAGCATCCCATAG+AGG | - | Chr5:2742734-2742753 | None:intergenic | 45.0% | |
| ! | GCATCTGTTCTCAAAGCATC+TGG | - | Chr5:2743459-2743478 | None:intergenic | 45.0% |
| !! | CGCACAAAAGCACCATTACT+TGG | - | Chr5:2742770-2742789 | None:intergenic | 45.0% |
| ACCTCTGCAGCAGTCATGTT+GGG | - | Chr5:2742827-2742846 | None:intergenic | 50.0% | |
| ATCATTCAGGCAAAGGAGGG+GGG | - | Chr5:2742876-2742895 | None:intergenic | 50.0% | |
| ATCCCATAGAGGCTCAGTCA+GGG | - | Chr5:2742723-2742742 | None:intergenic | 50.0% | |
| CAGCTCAGAGAGAGAGAGAA+CGG | + | Chr5:2743288-2743307 | MsG0580024265.01.T01:CDS | 50.0% | |
| CATCATTCAGGCAAAGGAGG+GGG | - | Chr5:2742877-2742896 | None:intergenic | 50.0% | |
| CCTGATTTCAGAGGTTAGGC+TGG | + | Chr5:2743558-2743577 | MsG0580024265.01.T01:intron | 50.0% | |
| GATTGTGCAGAAAACCCCTG+TGG | + | Chr5:2743723-2743742 | MsG0580024265.01.T02:three_prime_UTR | 50.0% | |
| GGCAATACCGCCTTGTCTAT+TGG | + | Chr5:2743579-2743598 | MsG0580024265.01.T01:three_prime_UTR | 50.0% | |
| GGTGACTTCCTAAACTCTGG+TGG | + | Chr5:2743701-2743720 | MsG0580024265.01.T02:three_prime_UTR | 50.0% | |
| TACCTCTGCAGCAGTCATGT+TGG | - | Chr5:2742828-2742847 | None:intergenic | 50.0% | |
| TCTCTGAGCTGCAGCTTCTT+CGG | - | Chr5:2743279-2743298 | None:intergenic | 50.0% | |
| !! | CCAGCCTAACCTCTGAAATC+AGG | - | Chr5:2743561-2743580 | None:intergenic | 50.0% |
| CATCCCATAGAGGCTCAGTC+AGG | - | Chr5:2742724-2742743 | None:intergenic | 55.0% | |
| TCAACTGGGGCAATAAGCCC+TGG | - | Chr5:2743332-2743351 | None:intergenic | 55.0% | |
| TCCCAACATGACTGCTGCAG+AGG | + | Chr5:2742823-2742842 | MsG0580024265.01.T01:CDS | 55.0% | |
| TGCCCTGACTGAGCCTCTAT+GGG | + | Chr5:2742718-2742737 | MsG0580024265.01.T01:CDS | 55.0% | |
| GTGCCCTGACTGAGCCTCTA+TGG | + | Chr5:2742717-2742736 | MsG0580024265.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 2742477 | 2743842 | 2742477 | ID=MsG0580024265.01;Name=MsG0580024265.01 |
| Chr5 | mRNA | 2742477 | 2743671 | 2742477 | ID=MsG0580024265.01.T01;Parent=MsG0580024265.01;Name=MsG0580024265.01.T01;_AED=0.49;_eAED=0.49;_QI=0|1|0.8|1|0.5|0.4|5|103|172 |
| Chr5 | exon | 2743257 | 2743379 | 2743257 | ID=MsG0580024265.01.T01:exon:651;Parent=MsG0580024265.01.T01 |
| Chr5 | exon | 2743569 | 2743671 | 2743569 | ID=MsG0580024265.01.T01:exon:652;Parent=MsG0580024265.01.T01 |
| Chr5 | CDS | 2742477 | 2742629 | 2742477 | ID=MsG0580024265.01.T01:cds;Parent=MsG0580024265.01.T01 |
| Chr5 | CDS | 2742707 | 2742844 | 2742707 | ID=MsG0580024265.01.T01:cds;Parent=MsG0580024265.01.T01 |
| Chr5 | CDS | 2742919 | 2743023 | 2742919 | ID=MsG0580024265.01.T01:cds;Parent=MsG0580024265.01.T01 |
| Chr5 | CDS | 2743257 | 2743379 | 2743257 | ID=MsG0580024265.01.T01:cds;Parent=MsG0580024265.01.T01 |
| Chr5 | three_prime_UTR | 2743569 | 2743671 | 2743569 | ID=MsG0580024265.01.T01:three_prime_utr;Parent=MsG0580024265.01.T01 |
| Chr5 | mRNA | 2742477 | 2743842 | 2742477 | ID=MsG0580024265.01.T02;Parent=MsG0580024265.01;Name=MsG0580024265.01.T02;_AED=0.48;_eAED=0.48;_QI=0|1|0.75|1|0.66|0.75|4|463|172 |
| Chr5 | exon | 2743257 | 2743842 | 2743257 | ID=MsG0580024265.01.T02:exon:653;Parent=MsG0580024265.01.T02 |
| Chr5 | CDS | 2742477 | 2742629 | 2742477 | ID=MsG0580024265.01.T02:cds;Parent=MsG0580024265.01.T02 |
| Chr5 | CDS | 2742707 | 2742844 | 2742707 | ID=MsG0580024265.01.T02:cds;Parent=MsG0580024265.01.T02 |
| Chr5 | CDS | 2742919 | 2743023 | 2742919 | ID=MsG0580024265.01.T02:cds;Parent=MsG0580024265.01.T02 |
| Chr5 | CDS | 2743257 | 2743379 | 2743257 | ID=MsG0580024265.01.T02:cds;Parent=MsG0580024265.01.T02 |
| Chr5 | three_prime_UTR | 2743380 | 2743842 | 2743380 | ID=MsG0580024265.01.T02:three_prime_utr;Parent=MsG0580024265.01.T02 |
| Gene Sequence |
| Protein sequence |
