AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022795.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022795.01.T01 MTR_4g096880 95.652 69 3 0 36 104 350 418 6.83e-41 143
MsG0480022795.01.T01 MTR_1g054775 70.000 70 16 1 130 199 1392 1456 6.70e-26 104
MsG0480022795.01.T01 MTR_4g073080 68.421 57 18 0 44 100 339 395 1.16e-19 86.3
MsG0480022795.01.T01 MTR_2g088480 66.667 48 16 0 127 174 28 75 3.82e-17 73.6
MsG0480022795.01.T01 MTR_2g082040 43.662 71 40 0 108 178 5 75 3.17e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022795.01.T01 AT5G58230 64.706 102 8 1 1 102 343 416 1.70e-36 132
MsG0480022795.01.T01 AT2G16780 77.193 57 13 0 44 100 347 403 3.14e-24 99.0
MsG0480022795.01.T01 AT4G35050 76.923 52 12 0 44 95 348 399 2.67e-21 90.9

Find 47 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACTCAGTAAACATTTC+AGG 0.249087 4:+76761790 None:intergenic
CTGAAATGTTTACTGAGTTT+TGG 0.279934 4:-76761789 MsG0480022795.01.T01:intron
GCAGATGGTAAATGGATTAA+AGG 0.288528 4:-76758703 MsG0480022795.01.T01:CDS
CGACGGTGCCTGCAAGGATC+TGG 0.293090 4:-76758761 MsG0480022795.01.T01:CDS
TATTTCCTTCGCGCCAAGTA+TGG 0.297446 4:+76758450 None:intergenic
AATGAAAGCATCACCATATC+TGG 0.315250 4:-76761841 MsG0480022795.01.T01:CDS
AAGGATCTGGGTCATATTTC+CGG 0.320954 4:-76758748 MsG0480022795.01.T01:CDS
GGGGCCTGTGCTGACTGTTC+TGG 0.324266 4:+76760892 None:intergenic
TTCGTGATGCAGATGGTAAA+TGG 0.348663 4:-76758711 MsG0480022795.01.T01:CDS
AAGACAACATACTTCAAATA+TGG 0.358936 4:-76760954 MsG0480022795.01.T01:CDS
ATTGTAGTTGTATTTCAATA+TGG 0.359917 4:-76760771 MsG0480022795.01.T01:intron
CATGGAACCCATGTGAAGAT+TGG 0.363420 4:-76760996 MsG0480022795.01.T01:CDS
AATATGACCCAGATCCTTGC+AGG 0.418868 4:+76758753 None:intergenic
TTCACTAGAAAGTCCAGATA+TGG 0.424053 4:+76761828 None:intergenic
CTGGGTCATATTTCCGGTTG+TGG 0.444190 4:-76758742 MsG0480022795.01.T01:CDS
CATCAGGAAGCTGCTGAGAA+TGG 0.445917 4:-76758492 MsG0480022795.01.T01:CDS
AAAACTCAGTAAACATTTCA+GGG 0.452121 4:+76761791 None:intergenic
AAAGGCTACACTAAGAAGAT+TGG 0.457403 4:-76758685 MsG0480022795.01.T01:CDS
GGACCATCTTCAGCATCCTC+TGG 0.473998 4:+76761072 None:intergenic
GCAAAATATCCGACTTCTCA+TGG 0.491026 4:-76761014 MsG0480022795.01.T01:CDS
TGCAGGCACCGTCGCTGTTG+AGG 0.502638 4:+76758770 None:intergenic
ATGTGCAAATCAACCATACT+TGG 0.502873 4:-76758463 MsG0480022795.01.T01:CDS
GACGGTGCCTGCAAGGATCT+GGG 0.512290 4:-76758760 MsG0480022795.01.T01:CDS
TGCCTTACATGCTGAGATGT+GGG 0.518028 4:-76758653 MsG0480022795.01.T01:CDS
TGATGGTGTGGGATCTTAGC+AGG 0.518950 4:-76761872 MsG0480022795.01.T01:CDS
ACAACTACAATTGCGTAGAA+AGG 0.522646 4:+76760783 None:intergenic
ATGGAACCCATGTGAAGATT+GGG 0.525962 4:-76760995 MsG0480022795.01.T01:CDS
ATGCCTTACATGCTGAGATG+TGG 0.541689 4:-76758654 MsG0480022795.01.T01:CDS
TCACCAGAGGATGCTGAAGA+TGG 0.548104 4:-76761075 MsG0480022795.01.T01:CDS
CAACAGCGACGGTGCCTGCA+AGG 0.552065 4:-76758767 MsG0480022795.01.T01:CDS
ATCAACCATACTTGGCGCGA+AGG 0.554196 4:-76758455 MsG0480022795.01.T01:CDS
AGATTGGGTTGTTGCTAGTG+TGG 0.562356 4:-76760980 MsG0480022795.01.T01:CDS
GGAAGCTGCTGAGAATGGAT+TGG 0.570160 4:-76758487 MsG0480022795.01.T01:CDS
AGTAACAGCACGAATACAGA+TGG 0.573291 4:+76760806 None:intergenic
TTGGTAGGAGACTGATGGTG+TGG 0.580867 4:-76761884 None:intergenic
GGTCATATTTCCGGTTGTGG+TGG 0.584731 4:-76758739 MsG0480022795.01.T01:CDS
GCCTTACATGCTGAGATGTG+GGG 0.587717 4:-76758652 MsG0480022795.01.T01:CDS
CCTTACATGCTGAGATGTGG+GGG 0.593454 4:-76758651 MsG0480022795.01.T01:CDS
CTGGCATATCATCTTCGTCA+TGG 0.595465 4:+76760911 None:intergenic
TGGTAGGAGACTGATGGTGT+GGG 0.611927 4:-76761883 None:intergenic
ACATGGGTTCCATGAGAAGT+CGG 0.616608 4:+76761005 None:intergenic
GCAACAACCCAATCTTCACA+TGG 0.617675 4:+76760988 None:intergenic
CATACTTCAAATATGGCAGA+TGG 0.618787 4:-76760947 MsG0480022795.01.T01:CDS
TTAAAACACCTCAACAGCGA+CGG 0.645243 4:-76758778 MsG0480022795.01.T01:CDS
GACGAAAGAGCAGTCACCAG+AGG 0.654021 4:-76761088 MsG0480022795.01.T01:CDS
CAACAACCCAATCTTCACAT+GGG 0.694803 4:+76760989 None:intergenic
CTTACATGCTGAGATGTGGG+GGG 0.757421 4:-76758650 MsG0480022795.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGTTTGTATATAATATA+TGG - Chr4:76758896-76758915 MsG0480022795.01.T01:intron 10.0%
!! TTTGTTTGTATATAATATAT+GGG - Chr4:76758897-76758916 MsG0480022795.01.T01:intron 10.0%
!! AAAACCAAAAATGATATGTA+AGG + Chr4:76761401-76761420 None:intergenic 20.0%
!! AGTTTCAACAAATTGATAAA+GGG + Chr4:76761155-76761174 None:intergenic 20.0%
!! ATTGTAGTTGTATTTCAATA+TGG - Chr4:76759548-76759567 MsG0480022795.01.T01:intron 20.0%
!! GTAATATAATATATTGAGTG+AGG + Chr4:76760456-76760475 None:intergenic 20.0%
!! TGTAAGGTTAGAAAATTTAA+TGG + Chr4:76761385-76761404 None:intergenic 20.0%
!! TTAAAAAATTGACAATTGAG+AGG + Chr4:76758638-76758657 None:intergenic 20.0%
!! TTAATGAGACAAATATTGAT+TGG + Chr4:76760906-76760925 None:intergenic 20.0%
!!! AAACAGATTTTCAATTAACT+TGG + Chr4:76761113-76761132 None:intergenic 20.0%
!!! AACAGATTTTCAATTAACTT+GGG + Chr4:76761112-76761131 None:intergenic 20.0%
!!! ACTCTTCTAAAACTTTAAAA+TGG - Chr4:76760530-76760549 MsG0480022795.01.T01:intron 20.0%
!!! ATTTTAACTTGAAACATTTG+AGG + Chr4:76759080-76759099 None:intergenic 20.0%
!!! CTCTTCTAAAACTTTAAAAT+GGG - Chr4:76760531-76760550 MsG0480022795.01.T01:intron 20.0%
!!! TGAACATAATTCTGAAAAAT+TGG - Chr4:76759599-76759618 MsG0480022795.01.T01:intron 20.0%
!!! TTTTAACTTGAAACATTTGA+GGG + Chr4:76759079-76759098 None:intergenic 20.0%
! AAAACTCAGTAAACATTTCA+GGG + Chr4:76758531-76758550 None:intergenic 25.0%
! AAATGTTAGAAGTTAGTTGT+TGG - Chr4:76758974-76758993 MsG0480022795.01.T01:intron 25.0%
! AACAACTAACTTCTAACATT+TGG + Chr4:76758975-76758994 None:intergenic 25.0%
! AACCTAATATAACTCAAGAA+AGG + Chr4:76758720-76758739 None:intergenic 25.0%
! AACTGAGTTCAATTACATTA+AGG + Chr4:76759451-76759470 None:intergenic 25.0%
! AAGACAACATACTTCAAATA+TGG - Chr4:76759365-76759384 MsG0480022795.01.T01:intron 25.0%
! AATGCACATCAAAACAAATT+TGG + Chr4:76760874-76760893 None:intergenic 25.0%
! ACTGAGTTCAATTACATTAA+GGG + Chr4:76759450-76759469 None:intergenic 25.0%
! ATATTTATGCTCTTACAACT+CGG - Chr4:76760791-76760810 MsG0480022795.01.T01:CDS 25.0%
! ATGCACATCAAAACAAATTT+GGG + Chr4:76760873-76760892 None:intergenic 25.0%
! CAGTTTCAACAAATTGATAA+AGG + Chr4:76761156-76761175 None:intergenic 25.0%
! CTATATATCTTAACAACACT+GGG + Chr4:76761249-76761268 None:intergenic 25.0%
! GGCATTTAAAAGAAATGTTT+AGG + Chr4:76761471-76761490 None:intergenic 25.0%
! TAAATAATAAACCCAAAAGC+CGG - Chr4:76758584-76758603 MsG0480022795.01.T01:intron 25.0%
! TCAAGTTAAAATGTCTAAAG+TGG - Chr4:76759088-76759107 MsG0480022795.01.T01:intron 25.0%
! TCTATATATCTTAACAACAC+TGG + Chr4:76761250-76761269 None:intergenic 25.0%
! TGTATATAATATATGGGCTT+CGG - Chr4:76758903-76758922 MsG0480022795.01.T01:intron 25.0%
! TTGTATTTCAATATGGTATG+AGG - Chr4:76759555-76759574 MsG0480022795.01.T01:intron 25.0%
!! AGTTGTAAGAGCATAAATAT+TGG + Chr4:76760791-76760810 None:intergenic 25.0%
!! CAAGTTAAAATGTCTAAAGT+GGG - Chr4:76759089-76759108 MsG0480022795.01.T01:intron 25.0%
!! CTAACCTTACATATCATTTT+TGG - Chr4:76761394-76761413 MsG0480022795.01.T01:intron 25.0%
!! GAAATATAGGTTGAATGTTT+GGG - Chr4:76759476-76759495 MsG0480022795.01.T01:intron 25.0%
!! TGAAATATAGGTTGAATGTT+TGG - Chr4:76759475-76759494 MsG0480022795.01.T01:intron 25.0%
!!! ACATTTTGATCATCTTATAG+TGG - Chr4:76761725-76761744 MsG0480022795.01.T01:intron 25.0%
!!! CATATCATTTTTGGTTTTGA+AGG - Chr4:76761403-76761422 MsG0480022795.01.T01:intron 25.0%
!!! TGTCAATTTTTTAACCTCAT+GGG - Chr4:76758644-76758663 MsG0480022795.01.T01:CDS 25.0%
!!! TTGAAAATCTGTTTTTTCTC+AGG - Chr4:76761119-76761138 MsG0480022795.01.T01:intron 25.0%
!!! TTGTCAATTTTTTAACCTCA+TGG - Chr4:76758643-76758662 MsG0480022795.01.T01:CDS 25.0%
!!! TTTAACTTGAAACATTTGAG+GGG + Chr4:76759078-76759097 None:intergenic 25.0%
AATTGGTATTCAAGGATTTG+AGG - Chr4:76760270-76760289 MsG0480022795.01.T01:intron 30.0%
ACTCAGTTAGTGTGAAATAT+AGG - Chr4:76759463-76759482 MsG0480022795.01.T01:intron 30.0%
ACTTAATTCGCTAAAAAGAG+TGG + Chr4:76758682-76758701 None:intergenic 30.0%
AGCTGTGTAAAAAATTGTGT+TGG + Chr4:76760028-76760047 None:intergenic 30.0%
AGTTGGCTAAGTAAAATTAG+AGG + Chr4:76761492-76761511 None:intergenic 30.0%
ATAGATAGAGATGACTTGAA+GGG - Chr4:76761701-76761720 MsG0480022795.01.T01:intron 30.0%
CAAAACTCAGTAAACATTTC+AGG + Chr4:76758532-76758551 None:intergenic 30.0%
CCATGAATAAAAAGCAATTC+TGG + Chr4:76759274-76759293 None:intergenic 30.0%
CTGAGTTCAATTACATTAAG+GGG + Chr4:76759449-76759468 None:intergenic 30.0%
GACAAAAACACAAGGAAATA+AGG + Chr4:76759777-76759796 None:intergenic 30.0%
GACATGTTGACAAAAAAACT+TGG - Chr4:76760707-76760726 MsG0480022795.01.T01:intron 30.0%
TAAGAGAAACTTTAATCCAG+TGG + Chr4:76758615-76758634 None:intergenic 30.0%
TAATGAGACTAATGGAGTAA+TGG - Chr4:76758743-76758762 MsG0480022795.01.T01:CDS 30.0%
TATAGATAGAGATGACTTGA+AGG - Chr4:76761700-76761719 MsG0480022795.01.T01:intron 30.0%
TATTTATGCTCTTACAACTC+GGG - Chr4:76760792-76760811 MsG0480022795.01.T01:CDS 30.0%
TCAAACAGAAAGAAAGGTTT+GGG + Chr4:76759879-76759898 None:intergenic 30.0%
TGAATAAAAAGCAATTCTGG+TGG + Chr4:76759271-76759290 None:intergenic 30.0%
TGATGCGATGAACTAAAATA+GGG + Chr4:76761812-76761831 None:intergenic 30.0%
TGCACATCAAAACAAATTTG+GGG + Chr4:76760872-76760891 None:intergenic 30.0%
TGCCTTTCTTGAGTTATATT+AGG - Chr4:76758715-76758734 MsG0480022795.01.T01:CDS 30.0%
TTAATATTTACTCCTTCGTC+CGG - Chr4:76758998-76759017 MsG0480022795.01.T01:intron 30.0%
TTTCAATATGGTATGAGGTA+TGG - Chr4:76759560-76759579 MsG0480022795.01.T01:intron 30.0%
! CTGAAATGTTTACTGAGTTT+TGG - Chr4:76758530-76758549 MsG0480022795.01.T01:intron 30.0%
! CTGACAAGTTCAAGTTTAAT+GGG - Chr4:76761781-76761800 MsG0480022795.01.T01:intron 30.0%
! TAAATGATCAAACCCCTTTT+AGG - Chr4:76759834-76759853 MsG0480022795.01.T01:intron 30.0%
! TCTGACAAGTTCAAGTTTAA+TGG - Chr4:76761780-76761799 MsG0480022795.01.T01:intron 30.0%
! TGTTGTTCACTCTTTTATGT+AGG - Chr4:76759205-76759224 MsG0480022795.01.T01:intron 30.0%
! TTAACTTGAAACATTTGAGG+GGG + Chr4:76759077-76759096 None:intergenic 30.0%
! TTTTGTCAACATGTCTTGTA+TGG + Chr4:76760702-76760721 None:intergenic 30.0%
!! AATAGAAAAGTGTCATCAGA+AGG + Chr4:76760178-76760197 None:intergenic 30.0%
!! ACTCTTTTTAGCGAATTAAG+TGG - Chr4:76758681-76758700 MsG0480022795.01.T01:CDS 30.0%
!! ATTTTCAATTAACTTGGGAG+AGG + Chr4:76761107-76761126 None:intergenic 30.0%
!! CAATTTGTTGAAACTGAAGA+AGG - Chr4:76761160-76761179 MsG0480022795.01.T01:intron 30.0%
!! GTGTTTTAAGTCTAGAATGA+AGG + Chr4:76761530-76761549 None:intergenic 30.0%
!! TAAATGTGGCTTTAGCAATA+GGG + Chr4:76760131-76760150 None:intergenic 30.0%
!! TAAGTCTAGAATGAAGGTTT+TGG + Chr4:76761524-76761543 None:intergenic 30.0%
!! TAATTAGTTTGCAGTCTTAG+TGG - Chr4:76759809-76759828 MsG0480022795.01.T01:intron 30.0%
!! TTAAAGAGTACTGAGCAATT+AGG + Chr4:76760988-76761007 None:intergenic 30.0%
!! TTTACTGAGTTTTGGTATGT+TGG - Chr4:76758538-76758557 MsG0480022795.01.T01:intron 30.0%
!!! AAAGTTTTAGAAGAGTGATG+TGG + Chr4:76760526-76760545 None:intergenic 30.0%
!!! CCAGAATTGCTTTTTATTCA+TGG - Chr4:76759271-76759290 MsG0480022795.01.T01:intron 30.0%
!!! GAATTGCTTTTTATTCATGG+TGG - Chr4:76759274-76759293 MsG0480022795.01.T01:intron 30.0%
AAAGGCTACACTAAGAAGAT+TGG - Chr4:76761634-76761653 MsG0480022795.01.T01:intron 35.0%
AATCAAAACTTAGCGATGTC+AGG - Chr4:76760627-76760646 MsG0480022795.01.T01:intron 35.0%
AATTGATAAAGGGCCTCAAT+AGG + Chr4:76761145-76761164 None:intergenic 35.0%
ACAACTACAATTGCGTAGAA+AGG + Chr4:76759539-76759558 None:intergenic 35.0%
ACATCAAAGTCCAAAGATCA+GGG + Chr4:76758824-76758843 None:intergenic 35.0%
ACCCCATCTATAACAAAAGT+CGG + Chr4:76758851-76758870 None:intergenic 35.0%
AGAAACTTTAATCCAGTGGA+AGG + Chr4:76758611-76758630 None:intergenic 35.0%
AGGTTCTGTAATGAGACTAA+TGG - Chr4:76758735-76758754 MsG0480022795.01.T01:CDS 35.0%
ATCATCAAATGAGTCAGGAT+GGG - Chr4:76760244-76760263 MsG0480022795.01.T01:intron 35.0%
ATGCAAGGTTCATCCTAAAA+GGG + Chr4:76759850-76759869 None:intergenic 35.0%
ATGGGGTTAATTGGTATTCA+AGG - Chr4:76760262-76760281 MsG0480022795.01.T01:intron 35.0%
ATGTGCAAATCAACCATACT+TGG - Chr4:76761856-76761875 MsG0480022795.01.T01:CDS 35.0%
ATTCTGTCGACAAAAACACA+AGG + Chr4:76759785-76759804 None:intergenic 35.0%
CATACTTCAAATATGGCAGA+TGG - Chr4:76759372-76759391 MsG0480022795.01.T01:intron 35.0%
CTCAAACAGAAAGAAAGGTT+TGG + Chr4:76759880-76759899 None:intergenic 35.0%
CTGATGCGATGAACTAAAAT+AGG + Chr4:76761813-76761832 None:intergenic 35.0%
GAATCTGTAACATGTTCCAA+TGG - Chr4:76761015-76761034 MsG0480022795.01.T01:CDS 35.0%
TAATATTTACTCCTTCGTCC+GGG - Chr4:76758999-76759018 MsG0480022795.01.T01:intron 35.0%
TACATCAAAGTCCAAAGATC+AGG + Chr4:76758825-76758844 None:intergenic 35.0%
TATGCAAGGTTCATCCTAAA+AGG + Chr4:76759851-76759870 None:intergenic 35.0%
TCATTAATTGCAGTGCCAAT+AGG - Chr4:76760919-76760938 MsG0480022795.01.T01:CDS 35.0%
TGATTCGCAATCTATAGAGT+GGG + Chr4:76759930-76759949 None:intergenic 35.0%
TGGAACATGTTACAGATTCT+TGG + Chr4:76761014-76761033 None:intergenic 35.0%
TTCACTAGAAAGTCCAGATA+TGG + Chr4:76758494-76758513 None:intergenic 35.0%
TTGCTAAAGCCACATTTACT+TGG - Chr4:76760133-76760152 MsG0480022795.01.T01:intron 35.0%
! AACTGGATGAATTTTACTCG+AGG - Chr4:76761198-76761217 MsG0480022795.01.T01:intron 35.0%
! AATCAACAGAAGCATGCAAT+TGG + Chr4:76758875-76758894 None:intergenic 35.0%
! ATGGATAAAATGAGAGCACA+AGG + Chr4:76760328-76760347 None:intergenic 35.0%
! GTAAGAGCATAAATATTGGC+TGG + Chr4:76760787-76760806 None:intergenic 35.0%
! TGGATAAAATGAGAGCACAA+GGG + Chr4:76760327-76760346 None:intergenic 35.0%
! TTAGTAGAGCTTCTAGTCTT+GGG - Chr4:76760000-76760019 MsG0480022795.01.T01:intron 35.0%
! TTGATTCGCAATCTATAGAG+TGG + Chr4:76759931-76759950 None:intergenic 35.0%
!! AAATGTGGCTTTAGCAATAG+GGG + Chr4:76760130-76760149 None:intergenic 35.0%
!! AATGAAAGCATCACCATATC+TGG - Chr4:76758478-76758497 MsG0480022795.01.T01:CDS 35.0%
!! ACCGACTTTTGTTATAGATG+GGG - Chr4:76758847-76758866 MsG0480022795.01.T01:intron 35.0%
!! AGGAGTGTCTTCACAAATAT+TGG + Chr4:76760759-76760778 None:intergenic 35.0%
!! GCAGATGGTAAATGGATTAA+AGG - Chr4:76761616-76761635 MsG0480022795.01.T01:intron 35.0%
!! GTAAATGTGGCTTTAGCAAT+AGG + Chr4:76760132-76760151 None:intergenic 35.0%
!! TAGTTTTGCTTAACGTGCTT+TGG + Chr4:76761445-76761464 None:intergenic 35.0%
!!! CACCGACTTTTGTTATAGAT+GGG - Chr4:76758846-76758865 MsG0480022795.01.T01:intron 35.0%
!!! CTATTTTAGTTCATCGCATC+AGG - Chr4:76761811-76761830 MsG0480022795.01.T01:CDS 35.0%
!!! TGTTTTGATGTGCATTTCTC+TGG - Chr4:76760878-76760897 MsG0480022795.01.T01:intron 35.0%
AACAGAAAGAAAGGTTTGGG+TGG + Chr4:76759876-76759895 None:intergenic 40.0%
AAGGATCTGGGTCATATTTC+CGG - Chr4:76761571-76761590 MsG0480022795.01.T01:intron 40.0%
ACGAAAAATACCACCACAAC+CGG + Chr4:76761593-76761612 None:intergenic 40.0%
AGAAGCTCTACTAACATGCA+TGG + Chr4:76759994-76760013 None:intergenic 40.0%
AGGCAAAATGCTTTCATGCA+CGG + Chr4:76759757-76759776 None:intergenic 40.0%
AGGTTGAATGTTTGGGTCTA+AGG - Chr4:76759483-76759502 MsG0480022795.01.T01:intron 40.0%
AGTAACAGCACGAATACAGA+TGG + Chr4:76759516-76759535 None:intergenic 40.0%
ATGGAACCCATGTGAAGATT+GGG - Chr4:76759324-76759343 MsG0480022795.01.T01:intron 40.0%
ATTCGCAATCTATAGAGTGG+GGG + Chr4:76759928-76759947 None:intergenic 40.0%
CAACAACCCAATCTTCACAT+GGG + Chr4:76759333-76759352 None:intergenic 40.0%
CATCAAAGTCCAAAGATCAG+GGG + Chr4:76758823-76758842 None:intergenic 40.0%
GAAGGAAGAATTGGAGATTC+AGG + Chr4:76760160-76760179 None:intergenic 40.0%
GAATTCAAGCTAAAGGTCAC+CGG + Chr4:76760380-76760399 None:intergenic 40.0%
GATCATCAAATGAGTCAGGA+TGG - Chr4:76760243-76760262 MsG0480022795.01.T01:intron 40.0%
GATTCAGGTCCAAGTAAATG+TGG + Chr4:76760145-76760164 None:intergenic 40.0%
GATTCGCAATCTATAGAGTG+GGG + Chr4:76759929-76759948 None:intergenic 40.0%
GCAAAATATCCGACTTCTCA+TGG - Chr4:76759305-76759324 MsG0480022795.01.T01:intron 40.0%
GGAACTTTAATTCACCCATG+AGG + Chr4:76758661-76758680 None:intergenic 40.0%
GGAGGTTGAATTCAAGCTAA+AGG + Chr4:76760387-76760406 None:intergenic 40.0%
GGGAACTCAAACAGAAAGAA+AGG + Chr4:76759885-76759904 None:intergenic 40.0%
GTGTCATCAGAAGGAAGAAT+TGG + Chr4:76760169-76760188 None:intergenic 40.0%
GTTAGTAGAGCTTCTAGTCT+TGG - Chr4:76759999-76760018 MsG0480022795.01.T01:intron 40.0%
TCAAGCCAAGAGTTACCTAT+TGG + Chr4:76760937-76760956 None:intergenic 40.0%
TCATCAAATGAGTCAGGATG+GGG - Chr4:76760245-76760264 MsG0480022795.01.T01:intron 40.0%
TCCAGATCATCAAATGAGTC+AGG - Chr4:76760239-76760258 MsG0480022795.01.T01:intron 40.0%
TGCAAGGTTCATCCTAAAAG+GGG + Chr4:76759849-76759868 None:intergenic 40.0%
TGCTATATCCTCATGGCTTA+AGG - Chr4:76760957-76760976 MsG0480022795.01.T01:CDS 40.0%
TTAAAACACCTCAACAGCGA+CGG - Chr4:76761541-76761560 MsG0480022795.01.T01:intron 40.0%
TTACTCGAGGTAGATGCAAT+AGG - Chr4:76761211-76761230 MsG0480022795.01.T01:intron 40.0%
TTCGTGATGCAGATGGTAAA+TGG - Chr4:76761608-76761627 MsG0480022795.01.T01:intron 40.0%
TTGTTATGCGTCGAGTCATT+AGG - Chr4:76759636-76759655 MsG0480022795.01.T01:intron 40.0%
! ATAAATATTGGCTGGCAGAG+AGG + Chr4:76760779-76760798 None:intergenic 40.0%
! ATTCAGCCACATCGGTTAAA+AGG + Chr4:76759709-76759728 None:intergenic 40.0%
! GATCATGTCAATGTTTTGCG+TGG + Chr4:76760061-76760080 None:intergenic 40.0%
! GGATAAAATGAGAGCACAAG+GGG + Chr4:76760326-76760345 None:intergenic 40.0%
! GGTATTTTTCGTGATGCAGA+TGG - Chr4:76761601-76761620 MsG0480022795.01.T01:intron 40.0%
! TCCTGACTCATTTGATGATC+TGG + Chr4:76760243-76760262 None:intergenic 40.0%
! TTCAGCCACATCGGTTAAAA+GGG + Chr4:76759708-76759727 None:intergenic 40.0%
!! ACTGAGTTTTGGTATGTTGG+TGG - Chr4:76758541-76758560 MsG0480022795.01.T01:intron 40.0%
!!! GCACCGACTTTTGTTATAGA+TGG - Chr4:76758845-76758864 MsG0480022795.01.T01:intron 40.0%
!!! GTTTTTTCTCAGGCCTATTG+AGG - Chr4:76761129-76761148 MsG0480022795.01.T01:intron 40.0%
AATATGACCCAGATCCTTGC+AGG + Chr4:76761569-76761588 None:intergenic 45.0%
AATGTGGGTGGCATGAATGT+GGG + Chr4:76760418-76760437 None:intergenic 45.0%
ACATGGGTTCCATGAGAAGT+CGG + Chr4:76759317-76759336 None:intergenic 45.0%
AGGCTATTCCTTAAGCCATG+AGG + Chr4:76760968-76760987 None:intergenic 45.0%
ATGCCTTACATGCTGAGATG+TGG - Chr4:76761665-76761684 MsG0480022795.01.T01:intron 45.0%
ATTACCAACAAGCACGACCT+TGG - Chr4:76760346-76760365 MsG0480022795.01.T01:intron 45.0%
CAGTCAAAGCATGGGATTGA+AGG - Chr4:76761047-76761066 MsG0480022795.01.T01:CDS 45.0%
CAGTGCCAATAGGTAACTCT+TGG - Chr4:76760929-76760948 MsG0480022795.01.T01:CDS 45.0%
CATGGAACCCATGTGAAGAT+TGG - Chr4:76759323-76759342 MsG0480022795.01.T01:intron 45.0%
CATTGCAGATTCAGCCACAT+CGG + Chr4:76759717-76759736 None:intergenic 45.0%
CTGGCATATCATCTTCGTCA+TGG + Chr4:76759411-76759430 None:intergenic 45.0%
CTTGAAACATTTGAGGGGGT+TGG + Chr4:76759073-76759092 None:intergenic 45.0%
CTTTAATCCAGTGGAAGGAC+CGG + Chr4:76758606-76758625 None:intergenic 45.0%
GCAACAACCCAATCTTCACA+TGG + Chr4:76759334-76759353 None:intergenic 45.0%
GCATGAATGTGGGTTCTCTA+AGG + Chr4:76760408-76760427 None:intergenic 45.0%
GCTTTAGCAATAGGGGAAGA+CGG + Chr4:76760123-76760142 None:intergenic 45.0%
GGACTGCACTTCTGATAAAC+TGG - Chr4:76761181-76761200 MsG0480022795.01.T01:intron 45.0%
GGCAAAATGCTTTCATGCAC+GGG + Chr4:76759756-76759775 None:intergenic 45.0%
GGCTTGATGCTATATCCTCA+TGG - Chr4:76760950-76760969 MsG0480022795.01.T01:CDS 45.0%
TACAACTCGGGATGGAACTT+TGG - Chr4:76760804-76760823 MsG0480022795.01.T01:CDS 45.0%
TATGCTCTTACAACTCGGGA+TGG - Chr4:76760796-76760815 MsG0480022795.01.T01:CDS 45.0%
TATTTCCTTCGCGCCAAGTA+TGG + Chr4:76761872-76761891 None:intergenic 45.0%
TCCATTCGTACCACCAATGT+GGG + Chr4:76760433-76760452 None:intergenic 45.0%
TGAGTCAGGATGGGGTTAAT+TGG - Chr4:76760253-76760272 MsG0480022795.01.T01:intron 45.0%
TGCCTTACATGCTGAGATGT+GGG - Chr4:76761666-76761685 MsG0480022795.01.T01:intron 45.0%
TTCGCAATCTATAGAGTGGG+GGG + Chr4:76759927-76759946 None:intergenic 45.0%
! AAGGTCGTGCTTGTTGGTAA+TGG + Chr4:76760347-76760366 None:intergenic 45.0%
! AGATTGGGTTGTTGCTAGTG+TGG - Chr4:76759339-76759358 MsG0480022795.01.T01:intron 45.0%
! CAGATCCCTTTTAACCGATG+TGG - Chr4:76759700-76759719 MsG0480022795.01.T01:intron 45.0%
! TGAATGTGGGTTCTCTAAGG+AGG + Chr4:76760405-76760424 None:intergenic 45.0%
!! AGCTCAACTGGTTTGAGCTA+CGG + Chr4:76759048-76759067 None:intergenic 45.0%
!!! GGTTTTGGTAGCGCATTAGT+TGG + Chr4:76761509-76761528 None:intergenic 45.0%
!! TTTAATTAAAATTAAACAAA+TGG - Chr4:76761334-76761353 MsG0480022795.01.T01:intron 5.0%
!!! ATTTTATTAATAAATGATAT+TGG + Chr4:76760562-76760581 None:intergenic 5.0%
!!! TATTATTATTTTCAATTAAT+AGG + Chr4:76760608-76760627 None:intergenic 5.0%
!!! TATTATTTTTCAAATTTTTT+AGG - Chr4:76760194-76760213 MsG0480022795.01.T01:intron 5.0%
AATCTATAGAGTGGGGGGGT+GGG + Chr4:76759922-76759941 None:intergenic 50.0%
ACTCACCATAGTATCCCGCA+TGG + Chr4:76760666-76760685 None:intergenic 50.0%
AGGTTTGGGTGGAGTATGCA+AGG + Chr4:76759865-76759884 None:intergenic 50.0%
AGTCCAAAGATCAGGGGACA+TGG + Chr4:76758817-76758836 None:intergenic 50.0%
AGTTGCCATGCGGGATACTA+TGG - Chr4:76760658-76760677 MsG0480022795.01.T01:intron 50.0%
ATCAACCATACTTGGCGCGA+AGG - Chr4:76761864-76761883 MsG0480022795.01.T01:CDS 50.0%
ATTCATGCCACCCACATTGG+TGG - Chr4:76760420-76760439 MsG0480022795.01.T01:intron 50.0%
ATTCGTACCACCAATGTGGG+TGG + Chr4:76760430-76760449 None:intergenic 50.0%
CAATGTGGGTGGCATGAATG+TGG + Chr4:76760419-76760438 None:intergenic 50.0%
CACAGCGACAGTCAAAGCAT+GGG - Chr4:76761039-76761058 MsG0480022795.01.T01:CDS 50.0%
CACATTCATGCCACCCACAT+TGG - Chr4:76760417-76760436 MsG0480022795.01.T01:intron 50.0%
CATCAGGAAGCTGCTGAGAA+TGG - Chr4:76761827-76761846 MsG0480022795.01.T01:CDS 50.0%
CCTTACATGCTGAGATGTGG+GGG - Chr4:76761668-76761687 MsG0480022795.01.T01:intron 50.0%
CTGGGTCATATTTCCGGTTG+TGG - Chr4:76761577-76761596 MsG0480022795.01.T01:intron 50.0%
CTTACATGCTGAGATGTGGG+GGG - Chr4:76761669-76761688 MsG0480022795.01.T01:intron 50.0%
GCAAAAGAGAGTTGCCATGC+GGG - Chr4:76760649-76760668 MsG0480022795.01.T01:intron 50.0%
GCCTTACATGCTGAGATGTG+GGG - Chr4:76761667-76761686 MsG0480022795.01.T01:intron 50.0%
GCGGGATACTATGGTGAGTT+TGG - Chr4:76760667-76760686 MsG0480022795.01.T01:intron 50.0%
GGAAGCTGCTGAGAATGGAT+TGG - Chr4:76761832-76761851 MsG0480022795.01.T01:CDS 50.0%
GGCAAAAGAGAGTTGCCATG+CGG - Chr4:76760648-76760667 MsG0480022795.01.T01:intron 50.0%
GGTCATATTTCCGGTTGTGG+TGG - Chr4:76761580-76761599 MsG0480022795.01.T01:intron 50.0%
GTCCAAAGATCAGGGGACAT+GGG + Chr4:76758816-76758835 None:intergenic 50.0%
GTCCATTCGTACCACCAATG+TGG + Chr4:76760434-76760453 None:intergenic 50.0%
GTTTGAGCTACGGGATAACG+AGG + Chr4:76759038-76759057 None:intergenic 50.0%
TATGCCAGAACAGTCAGCAC+AGG - Chr4:76759423-76759442 MsG0480022795.01.T01:intron 50.0%
TCACAGCGACAGTCAAAGCA+TGG - Chr4:76761038-76761057 MsG0480022795.01.T01:CDS 50.0%
TCACCAGAGGATGCTGAAGA+TGG - Chr4:76759244-76759263 MsG0480022795.01.T01:intron 50.0%
TCGCAATCTATAGAGTGGGG+GGG + Chr4:76759926-76759945 None:intergenic 50.0%
TTCAAGCTAAAGGTCACCGG+TGG + Chr4:76760377-76760396 None:intergenic 50.0%
TTGACTGTCGCTGTGACCAT+TGG + Chr4:76761034-76761053 None:intergenic 50.0%
TTTGCCAAGGTCGTGCTTGT+TGG + Chr4:76760353-76760372 None:intergenic 50.0%
! ACCCACATTGGTGGTACGAA+TGG - Chr4:76760429-76760448 MsG0480022795.01.T01:intron 50.0%
! CTACGGGATAACGAGGCATT+GGG + Chr4:76759031-76759050 None:intergenic 50.0%
!! CTGAGATGTGGGGGGTATTT+GGG - Chr4:76761677-76761696 MsG0480022795.01.T01:intron 50.0%
!! GCTCAACTGGTTTGAGCTAC+GGG + Chr4:76759047-76759066 None:intergenic 50.0%
AGGGGGTTGGATAGCTCAAC+TGG + Chr4:76759060-76759079 None:intergenic 55.0%
CAATCTATAGAGTGGGGGGG+TGG + Chr4:76759923-76759942 None:intergenic 55.0%
CACCCATGTCCCCTGATCTT+TGG - Chr4:76758811-76758830 MsG0480022795.01.T01:intron 55.0%
CACGACCTTGGCAAAACCAC+CGG - Chr4:76760358-76760377 MsG0480022795.01.T01:intron 55.0%
CCCCCACATCTCAGCATGTA+AGG + Chr4:76761671-76761690 None:intergenic 55.0%
GACGAAAGAGCAGTCACCAG+AGG - Chr4:76759231-76759250 MsG0480022795.01.T01:intron 55.0%
GCTACGGGATAACGAGGCAT+TGG + Chr4:76759032-76759051 None:intergenic 55.0%
GGACCATCTTCAGCATCCTC+TGG + Chr4:76759250-76759269 None:intergenic 55.0%
TTGGGTTCAAACCCGGACGA+AGG + Chr4:76759013-76759032 None:intergenic 55.0%
!! CAGTGGAAGGACCGGCTTTT+GGG + Chr4:76758598-76758617 None:intergenic 55.0%
!! CGAGGCATTGGGTTCAAACC+CGG + Chr4:76759020-76759039 None:intergenic 55.0%
!! GCTGAGATGTGGGGGGTATT+TGG - Chr4:76761676-76761695 MsG0480022795.01.T01:intron 55.0%
CCAAAAGCCGGTCCTTCCAC+TGG - Chr4:76758596-76758615 MsG0480022795.01.T01:intron 60.0%
GACGGTGCCTGCAAGGATCT+GGG - Chr4:76761559-76761578 MsG0480022795.01.T01:intron 60.0%
!! CCAGTGGAAGGACCGGCTTT+TGG + Chr4:76758599-76758618 None:intergenic 60.0%
!! GGTCACCGGTGGTTTTGCCA+AGG + Chr4:76760366-76760385 None:intergenic 60.0%
CAACAGCGACGGTGCCTGCA+AGG - Chr4:76761552-76761571 MsG0480022795.01.T01:intron 65.0%
CGACGGTGCCTGCAAGGATC+TGG - Chr4:76761558-76761577 MsG0480022795.01.T01:intron 65.0%
CTATAGAGTGGGGGGGTGGG+TGG + Chr4:76759919-76759938 None:intergenic 65.0%
! TGCAGGCACCGTCGCTGTTG+AGG + Chr4:76761552-76761571 None:intergenic 65.0%
!! GGGGCCTGTGCTGACTGTTC+TGG + Chr4:76759430-76759449 None:intergenic 65.0%
AGAGTGGGGGGGTGGGTGGT+GGG + Chr4:76759915-76759934 None:intergenic 70.0%
TAGAGTGGGGGGGTGGGTGG+TGG + Chr4:76759916-76759935 None:intergenic 70.0%
GAGTGGGGGGGTGGGTGGTG+GGG + Chr4:76759914-76759933 None:intergenic 75.0%
! AGTGGGGGGGTGGGTGGTGG+GGG + Chr4:76759913-76759932 None:intergenic 75.0%
!! GGGGTGGGTGGTGGGGGTGA+GGG + Chr4:76759907-76759926 None:intergenic 75.0%
!! GGGTGGGTGGTGGGGGTGAG+GGG + Chr4:76759906-76759925 None:intergenic 75.0%
!! GGTGGGTGGTGGGGGTGAGG+GGG + Chr4:76759905-76759924 None:intergenic 75.0%
!!! GGGGGTGGGTGGTGGGGGTG+AGG + Chr4:76759908-76759927 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76758449 76761892 76758449 ID=MsG0480022795.01;Name=MsG0480022795.01
Chr4 mRNA 76758449 76761892 76758449 ID=MsG0480022795.01.T01;Parent=MsG0480022795.01;Name=MsG0480022795.01.T01;_AED=0.65;_eAED=0.73;_QI=0|0|0|0.6|0.75|0.6|5|0|202
Chr4 exon 76761790 76761892 76761790 ID=MsG0480022795.01.T01:exon:10983;Parent=MsG0480022795.01.T01
Chr4 exon 76760907 76761114 76760907 ID=MsG0480022795.01.T01:exon:10982;Parent=MsG0480022795.01.T01
Chr4 exon 76760772 76760836 76760772 ID=MsG0480022795.01.T01:exon:10981;Parent=MsG0480022795.01.T01
Chr4 exon 76758643 76758802 76758643 ID=MsG0480022795.01.T01:exon:10980;Parent=MsG0480022795.01.T01
Chr4 exon 76758449 76758521 76758449 ID=MsG0480022795.01.T01:exon:10979;Parent=MsG0480022795.01.T01
Chr4 CDS 76761790 76761892 76761790 ID=MsG0480022795.01.T01:cds;Parent=MsG0480022795.01.T01
Chr4 CDS 76760907 76761114 76760907 ID=MsG0480022795.01.T01:cds;Parent=MsG0480022795.01.T01
Chr4 CDS 76760772 76760836 76760772 ID=MsG0480022795.01.T01:cds;Parent=MsG0480022795.01.T01
Chr4 CDS 76758643 76758802 76758643 ID=MsG0480022795.01.T01:cds;Parent=MsG0480022795.01.T01
Chr4 CDS 76758449 76758521 76758449 ID=MsG0480022795.01.T01:cds;Parent=MsG0480022795.01.T01
Gene Sequence

>MsG0480022795.01.T01

ATGGTGTGGGATCTTAGCAGGTATTGCTTAATGAAAGCATCACCATATCTGGACTTTCTAGTGAATTTTTTATCTGTTTCCCTGAAATGTTTACTGAGTTTTGGATTGACGAAAGAGCAGTCACCAGAGGATGCTGAAGATGGTCCACCAGAATTGCTTTTTATTCATGGTGGTCATACAAGCAAAATATCCGACTTCTCATGGAACCCATGTGAAGATTGGGTTGTTGCTAGTGTGGCTGAAGACAACATACTTCAAATATGGCAGATGGCAGAGAACATTTACCATGACGAAGATGATATGCCAGAACAGTGCTTTTCCATCTGTATTCGTGCTGTTACTCCTTTCTACGCAATTGTAGTTGTATTTCAATATGACTTAAAACACCTCAACAGCGACGGTGCCTGCAAGGATCTGGGTCATATTTCCGGTTGTGGTGGTATTTTTCGTGATGCAGATGGTAAATGGATTAAAGGCTACACTAAGAAGATTGGAGCTTGTGATGCCTTACATGCTGAGATGTGGGGGGTATTTGGTTCATCGCATCAGGAAGCTGCTGAGAATGGATTGGCATGTGCAAATCAACCATACTTGGCGCGAAGGAAATAG

Protein sequence

>MsG0480022795.01.T01

MVWDLSRYCLMKASPYLDFLVNFLSVSLKCLLSFGLTKEQSPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDMPEQCFSICIRAVTPFYAIVVVFQYDLKHLNSDGACKDLGHISGCGGIFRDADGKWIKGYTKKIGACDALHAEMWGVFGSSHQEAAENGLACANQPYLARRK*