Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039844.01.T01 | XP_003624200.1 | 98.81 | 84 | 0 | 1 | 3 | 85 | 327 | 410 | 3.73E-37 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039844.01.T01 | G7KRK9 | 98.810 | 84 | 0 | 1 | 3 | 85 | 327 | 410 | 1.78e-37 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047940.01 | MsG0780039844.01 | 0.881819 | 1.748669e-70 | 1.039496e-66 |
| MsG0080048113.01 | MsG0780039844.01 | 0.816648 | 4.961418e-52 | 3.535951e-49 |
| MsG0080048135.01 | MsG0780039844.01 | 0.835477 | 1.640199e-56 | 2.008028e-53 |
| MsG0080048600.01 | MsG0780039844.01 | 0.808034 | 3.776921e-50 | 2.136630e-47 |
| MsG0080048817.01 | MsG0780039844.01 | 0.802766 | 4.801801e-49 | 2.371978e-46 |
| MsG0080049013.01 | MsG0780039844.01 | -0.820451 | 6.813674e-53 | 5.393408e-50 |
| MsG0080049032.01 | MsG0780039844.01 | 0.800026 | 1.748109e-48 | 8.054885e-46 |
| MsG0180000139.01 | MsG0780039844.01 | 0.848201 | 7.125274e-60 | 1.297469e-56 |
| MsG0180000503.01 | MsG0780039844.01 | 0.808188 | 3.500652e-50 | 1.988575e-47 |
| MsG0180000575.01 | MsG0780039844.01 | 0.868151 | 8.077979e-66 | 2.892236e-62 |
| MsG0180000614.01 | MsG0780039844.01 | 0.843820 | 1.107672e-58 | 1.753911e-55 |
| MsG0180000615.01 | MsG0780039844.01 | 0.821723 | 3.470184e-53 | 2.845863e-50 |
| MsG0180000679.01 | MsG0780039844.01 | 0.802312 | 5.955923e-49 | 2.908344e-46 |
| MsG0180000743.01 | MsG0780039844.01 | 0.899663 | 1.585900e-77 | 1.980053e-73 |
| MsG0180002458.01 | MsG0780039844.01 | 0.814487 | 1.502961e-51 | 1.009831e-48 |
| MsG0180002482.01 | MsG0780039844.01 | 0.824724 | 6.911497e-54 | 6.173377e-51 |
| MsG0180002504.01 | MsG0780039844.01 | 0.809314 | 2.011261e-50 | 1.176981e-47 |
| MsG0180002895.01 | MsG0780039844.01 | 0.800158 | 1.643652e-48 | 7.598685e-46 |
| MsG0180003302.01 | MsG0780039844.01 | 0.862593 | 4.540455e-64 | 1.336830e-60 |
| MsG0180003409.01 | MsG0780039844.01 | 0.800892 | 1.164204e-48 | 5.483990e-46 |
| MsG0180004152.01 | MsG0780039844.01 | 0.821648 | 3.611147e-53 | 2.955199e-50 |
| MsG0180004481.01 | MsG0780039844.01 | 0.847183 | 1.359032e-59 | 2.395945e-56 |
| MsG0180004482.01 | MsG0780039844.01 | 0.831414 | 1.691988e-55 | 1.834733e-52 |
| MsG0180004509.01 | MsG0780039844.01 | 0.886634 | 2.884059e-72 | 2.076380e-68 |
| MsG0180004566.01 | MsG0780039844.01 | 0.805889 | 1.073556e-49 | 5.745903e-47 |
| MsG0180004779.01 | MsG0780039844.01 | 0.819629 | 1.050510e-52 | 8.126833e-50 |
| MsG0180004820.01 | MsG0780039844.01 | 0.804213 | 2.406025e-49 | 1.233370e-46 |
| MsG0180005851.01 | MsG0780039844.01 | 0.848111 | 7.548189e-60 | 1.370430e-56 |
| MsG0180005954.01 | MsG0780039844.01 | 0.803088 | 4.119562e-49 | 2.051523e-46 |
| MsG0180005993.01 | MsG0780039844.01 | 0.852492 | 4.454435e-61 | 9.323910e-58 |
| MsG0180006013.01 | MsG0780039844.01 | 0.821275 | 4.403966e-53 | 3.566432e-50 |
| MsG0180006261.01 | MsG0780039844.01 | 0.857475 | 1.591788e-62 | 3.933558e-59 |
| MsG0280006407.01 | MsG0780039844.01 | 0.873033 | 2.011381e-67 | 8.601303e-64 |
| MsG0280006422.01 | MsG0780039844.01 | 0.842580 | 2.370283e-58 | 3.610014e-55 |
| MsG0280006424.01 | MsG0780039844.01 | 0.807418 | 5.104969e-50 | 2.841906e-47 |
| MsG0280010776.01 | MsG0780039844.01 | 0.801870 | 7.343479e-49 | 3.545637e-46 |
| MsG0280010980.01 | MsG0780039844.01 | 0.804623 | 1.976570e-49 | 1.023961e-46 |
| MsG0280011003.01 | MsG0780039844.01 | 0.800211 | 1.602957e-48 | 7.420860e-46 |
| MsG0280011141.01 | MsG0780039844.01 | 0.803584 | 3.251425e-49 | 1.640153e-46 |
| MsG0280011388.01 | MsG0780039844.01 | 0.804943 | 1.694723e-49 | 8.853236e-47 |
| MsG0380012471.01 | MsG0780039844.01 | 0.827405 | 1.593100e-54 | 1.536681e-51 |
| MsG0380012661.01 | MsG0780039844.01 | -0.810233 | 1.276499e-50 | 7.652820e-48 |
| MsG0380013178.01 | MsG0780039844.01 | 0.820456 | 6.795563e-53 | 5.379842e-50 |
| MsG0380013754.01 | MsG0780039844.01 | 0.803458 | 3.452925e-49 | 1.736061e-46 |
| MsG0380014173.01 | MsG0780039844.01 | 0.818815 | 1.610096e-52 | 1.217782e-49 |
| MsG0380014647.01 | MsG0780039844.01 | 0.848574 | 5.620600e-60 | 1.035983e-56 |
| MsG0680030882.01 | MsG0780039844.01 | 0.800452 | 1.431585e-48 | 6.668202e-46 |
| MsG0680031361.01 | MsG0780039844.01 | 0.818573 | 1.827041e-52 | 1.372650e-49 |
| MsG0680031646.01 | MsG0780039844.01 | 0.815030 | 1.138813e-51 | 7.764620e-49 |
| MsG0680033699.01 | MsG0780039844.01 | 0.809971 | 1.453536e-50 | 8.655353e-48 |
| MsG0680033745.01 | MsG0780039844.01 | 0.804408 | 2.191913e-49 | 1.129225e-46 |
| MsG0680034501.01 | MsG0780039844.01 | 0.804055 | 2.595621e-49 | 1.325269e-46 |
| MsG0480018477.01 | MsG0780039844.01 | 0.801913 | 7.195558e-49 | 3.477902e-46 |
| MsG0480019486.01 | MsG0780039844.01 | 0.837560 | 4.835948e-57 | 6.305436e-54 |
| MsG0480020874.01 | MsG0780039844.01 | 0.817783 | 2.756617e-52 | 2.026662e-49 |
| MsG0480021215.01 | MsG0780039844.01 | 0.830023 | 3.709567e-55 | 3.861561e-52 |
| MsG0480021448.01 | MsG0780039844.01 | 0.829238 | 5.757204e-55 | 5.858254e-52 |
| MsG0480021451.01 | MsG0780039844.01 | 0.877826 | 4.602558e-69 | 2.347771e-65 |
| MsG0480021453.01 | MsG0780039844.01 | 0.874721 | 5.414202e-68 | 2.462846e-64 |
| MsG0480021465.01 | MsG0780039844.01 | 0.800512 | 1.391967e-48 | 6.493458e-46 |
| MsG0480021558.01 | MsG0780039844.01 | 0.800281 | 1.551032e-48 | 7.193518e-46 |
| MsG0480021750.01 | MsG0780039844.01 | 0.851734 | 7.316380e-61 | 1.495039e-57 |
| MsG0480021953.01 | MsG0780039844.01 | 0.833462 | 5.259953e-56 | 6.061623e-53 |
| MsG0480021994.01 | MsG0780039844.01 | 0.824821 | 6.557963e-54 | 5.873590e-51 |
| MsG0480022052.01 | MsG0780039844.01 | -0.805389 | 1.367017e-49 | 7.222919e-47 |
| MsG0480022164.01 | MsG0780039844.01 | 0.848691 | 5.214659e-60 | 9.648965e-57 |
| MsG0480022223.01 | MsG0780039844.01 | 0.806061 | 9.875003e-50 | 5.308743e-47 |
| MsG0480022696.01 | MsG0780039844.01 | 0.808919 | 2.444471e-50 | 1.415369e-47 |
| MsG0480022711.01 | MsG0780039844.01 | 0.809837 | 1.553048e-50 | 9.215652e-48 |
| MsG0480022768.01 | MsG0780039844.01 | 0.802445 | 5.590530e-49 | 2.739056e-46 |
| MsG0480022795.01 | MsG0780039844.01 | 0.920735 | 8.781088e-88 | 3.025199e-83 |
| MsG0480022836.01 | MsG0780039844.01 | 0.865137 | 7.341856e-65 | 2.363300e-61 |
| MsG0480022913.01 | MsG0780039844.01 | 0.824561 | 7.549304e-54 | 6.711018e-51 |
| MsG0480023399.01 | MsG0780039844.01 | 0.832094 | 1.149856e-55 | 1.272184e-52 |
| MsG0480023636.01 | MsG0780039844.01 | 0.813270 | 2.786056e-51 | 1.811039e-48 |
| MsG0480023771.01 | MsG0780039844.01 | 0.804251 | 2.362411e-49 | 1.212167e-46 |
| MsG0580024390.01 | MsG0780039844.01 | 0.821627 | 3.651337e-53 | 2.986261e-50 |
| MsG0580024754.01 | MsG0780039844.01 | 0.821909 | 3.142083e-53 | 2.590553e-50 |
| MsG0380015027.01 | MsG0780039844.01 | 0.835835 | 1.331529e-56 | 1.647703e-53 |
| MsG0380015164.01 | MsG0780039844.01 | 0.846123 | 2.645985e-59 | 4.507706e-56 |
| MsG0380015168.01 | MsG0780039844.01 | 0.809546 | 1.793580e-50 | 1.056114e-47 |
| MsG0380016067.01 | MsG0780039844.01 | 0.817909 | 2.582091e-52 | 1.904801e-49 |
| MsG0380016090.01 | MsG0780039844.01 | 0.802166 | 6.382948e-49 | 3.105069e-46 |
| MsG0380016559.01 | MsG0780039844.01 | 0.820084 | 8.267579e-53 | 6.478494e-50 |
| MsG0380016560.01 | MsG0780039844.01 | 0.802309 | 5.963081e-49 | 2.911614e-46 |
| MsG0380016775.01 | MsG0780039844.01 | 0.816897 | 4.364353e-52 | 3.131548e-49 |
| MsG0380016860.01 | MsG0780039844.01 | 0.838598 | 2.614740e-57 | 3.519540e-54 |
| MsG0380016886.01 | MsG0780039844.01 | 0.805816 | 1.112047e-49 | 5.940898e-47 |
| MsG0380017369.01 | MsG0780039844.01 | 0.844183 | 8.853104e-59 | 1.417969e-55 |
| MsG0380017382.01 | MsG0780039844.01 | 0.868490 | 6.281729e-66 | 2.276636e-62 |
| MsG0380017429.01 | MsG0780039844.01 | 0.819160 | 1.344003e-52 | 1.026238e-49 |
| MsG0480018163.01 | MsG0780039844.01 | 0.804522 | 2.074580e-49 | 1.071924e-46 |
| MsG0580029952.01 | MsG0780039844.01 | 0.812090 | 5.049054e-51 | 3.180227e-48 |
| MsG0280006483.01 | MsG0780039844.01 | 0.822786 | 1.966479e-53 | 1.662344e-50 |
| MsG0280006544.01 | MsG0780039844.01 | 0.828175 | 1.040487e-54 | 1.026336e-51 |
| MsG0280007058.01 | MsG0780039844.01 | -0.832842 | 7.503135e-56 | 8.487759e-53 |
| MsG0280007088.01 | MsG0780039844.01 | 0.811437 | 7.005734e-51 | 4.336563e-48 |
| MsG0280007222.01 | MsG0780039844.01 | 0.804496 | 2.100760e-49 | 1.084740e-46 |
| MsG0280009109.01 | MsG0780039844.01 | 0.836994 | 6.753525e-57 | 8.654586e-54 |
| MsG0280009140.01 | MsG0780039844.01 | 0.803196 | 3.912393e-49 | 1.953899e-46 |
| MsG0780036139.01 | MsG0780039844.01 | 0.809685 | 1.674263e-50 | 9.895218e-48 |
| MsG0780036184.01 | MsG0780039844.01 | -0.830530 | 2.788431e-55 | 2.945599e-52 |
| MsG0780036546.01 | MsG0780039844.01 | 0.823452 | 1.374813e-53 | 1.184170e-50 |
| MsG0780038400.01 | MsG0780039844.01 | 0.818716 | 1.695007e-52 | 1.278528e-49 |
| MsG0780038587.01 | MsG0780039844.01 | 0.804322 | 2.283848e-49 | 1.174040e-46 |
| MsG0780038645.01 | MsG0780039844.01 | 0.857686 | 1.377925e-62 | 3.429427e-59 |
| MsG0780038909.01 | MsG0780039844.01 | 0.812512 | 4.084134e-51 | 2.601903e-48 |
| MsG0780039137.01 | MsG0780039844.01 | 0.827992 | 1.151765e-54 | 1.130060e-51 |
| MsG0780039844.01 | MsG0780040162.01 | 0.800405 | 1.463658e-48 | 6.809586e-46 |
| MsG0780039844.01 | MsG0780040239.01 | 0.853366 | 2.505244e-61 | 5.400191e-58 |
| MsG0780039844.01 | MsG0780040545.01 | 0.822051 | 2.912391e-53 | 2.410772e-50 |
| MsG0780039844.01 | MsG0780040841.01 | 0.844892 | 5.705719e-59 | 9.343718e-56 |
| MsG0780039844.01 | MsG0780040858.01 | 0.815095 | 1.101643e-51 | 7.523844e-49 |
| MsG0780039844.01 | MsG0780041224.01 | 0.833763 | 4.424017e-56 | 5.144714e-53 |
| MsG0780039844.01 | MsG0780041295.01 | 0.826680 | 2.375435e-54 | 2.243119e-51 |
| MsG0780039844.01 | MsG0780041392.01 | 0.801701 | 7.952533e-49 | 3.823009e-46 |
| MsG0780039844.01 | MsG0780041402.01 | 0.844113 | 9.242840e-59 | 1.477165e-55 |
| MsG0780039844.01 | MsG0780041462.01 | 0.892285 | 1.827190e-74 | 1.658820e-70 |
| MsG0780039844.01 | MsG0880042131.01 | 0.803880 | 2.822491e-49 | 1.434620e-46 |
| MsG0780039844.01 | MsG0880042294.01 | 0.801827 | 7.491786e-49 | 3.613284e-46 |
| MsG0780039844.01 | MsG0880042519.01 | 0.803502 | 3.381035e-49 | 1.701902e-46 |
| MsG0780039844.01 | MsG0880042779.01 | 0.833734 | 4.498387e-56 | 5.226371e-53 |
| MsG0780039844.01 | MsG0880043477.01 | 0.825404 | 4.775165e-54 | 4.348265e-51 |
| MsG0780039844.01 | MsG0880045145.01 | 0.805622 | 1.221268e-49 | 6.491843e-47 |
| MsG0780039844.01 | MsG0880045653.01 | 0.807012 | 6.221597e-50 | 3.427141e-47 |
| MsG0780039844.01 | MsG0880045704.01 | -0.835112 | 2.028295e-56 | 2.455946e-53 |
| MsG0780039844.01 | MsG0880045937.01 | 0.805031 | 1.624291e-49 | 8.503758e-47 |
| MsG0780039844.01 | MsG0880046126.01 | 0.832546 | 8.887759e-56 | 9.966224e-53 |
| MsG0780039844.01 | MsG0880046458.01 | 0.822223 | 2.657861e-53 | 2.210936e-50 |
| MsG0780039844.01 | MsG0880046631.01 | 0.858321 | 8.923605e-63 | 2.268627e-59 |
| MsG0780039844.01 | MsG0880047427.01 | 0.878200 | 3.403325e-69 | 1.761122e-65 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039844.01.T01 | MTR_7g080320 | 98.810 | 84 | 0 | 1 | 3 | 85 | 327 | 410 | 4.52e-41 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCACATCCATAAGATTTA+TGG | 0.151914 | 7:+69680864 | None:intergenic |
| GCTTAGGTGTTGCTAAATTA+TGG | 0.257191 | 7:-69680750 | MsG0780039844.01.T01:three_prime_UTR |
| AGCAGCTGCCATAAATCTTA+TGG | 0.318878 | 7:-69680872 | MsG0780039844.01.T01:three_prime_UTR |
| CCACGTTCACGGTCCCTACT+AGG | 0.437974 | 7:+69681347 | None:intergenic |
| AACGGAGTAGGGATCGTGAC+AGG | 0.443961 | 7:-69681373 | MsG0780039844.01.T01:CDS |
| CATTGTCTCGCCCTCGCTCA+TGG | 0.461773 | 7:+69681318 | None:intergenic |
| GTGGGTGTTGAACCTTGTCT+TGG | 0.469863 | 7:-69680826 | MsG0780039844.01.T01:three_prime_UTR |
| AGGGCAACCAAGTCGATGAC+AGG | 0.489701 | 7:+69680635 | None:intergenic |
| CATATCCACGGTCTCTATCA+TGG | 0.494619 | 7:+69681267 | None:intergenic |
| CATGGCTCTCACCACGTTCA+CGG | 0.499053 | 7:+69681336 | None:intergenic |
| ATCGTGACAGGGAGCCTAGT+AGG | 0.501423 | 7:-69681361 | MsG0780039844.01.T01:CDS |
| ATTGAACAATATCTGAATGA+TGG | 0.531182 | 7:-69680784 | MsG0780039844.01.T01:three_prime_UTR |
| TATGGTTTGATGTTGCTTTG+CGG | 0.535034 | 7:-69680732 | MsG0780039844.01.T01:three_prime_UTR |
| ACAGATCAAAAGAACGGAGT+AGG | 0.538832 | 7:-69681385 | MsG0780039844.01.T01:CDS |
| GATGGATGTAACTTGAGCTT+AGG | 0.542349 | 7:-69680766 | MsG0780039844.01.T01:three_prime_UTR |
| ATAAGATGTGTAGTCTAGGT+GGG | 0.550978 | 7:-69680844 | MsG0780039844.01.T01:three_prime_UTR |
| TCGTGACAGGGAGCCTAGTA+GGG | 0.554514 | 7:-69681360 | MsG0780039844.01.T01:CDS |
| ACCGTGGATATGATCGAGAT+CGG | 0.556484 | 7:-69681256 | MsG0780039844.01.T01:CDS |
| CAGATCAAAAGAACGGAGTA+GGG | 0.561355 | 7:-69681384 | MsG0780039844.01.T01:CDS |
| TGTGATAAGATGTGTAGTCT+AGG | 0.567273 | 7:-69680848 | MsG0780039844.01.T01:three_prime_UTR |
| CTAGAGATTATGATCGTCAC+AGG | 0.572592 | 7:-69681172 | MsG0780039844.01.T01:intron |
| CCGTGGATATGATCGAGATC+GGG | 0.578018 | 7:-69681255 | MsG0780039844.01.T01:CDS |
| GCGACTTCTTGAATCATAGC+GGG | 0.581845 | 7:+69681220 | None:intergenic |
| GTAGGAGCAGAGATCGTGAC+AGG | 0.584050 | 7:-69681292 | MsG0780039844.01.T01:CDS |
| GCTCTCGAGATCGTGACCTC+CGG | 0.595184 | 7:+69681198 | None:intergenic |
| AAAATTATTTGTCCAAGACA+AGG | 0.599616 | 7:+69680814 | None:intergenic |
| CCTAGTAGGGACCGTGAACG+TGG | 0.608938 | 7:-69681347 | MsG0780039844.01.T01:CDS |
| GTGGTGAGAGCCATGAGCGA+GGG | 0.612251 | 7:-69681328 | MsG0780039844.01.T01:CDS |
| GATAAGATGTGTAGTCTAGG+TGG | 0.624297 | 7:-69680845 | MsG0780039844.01.T01:three_prime_UTR |
| CCCGATCTCGATCATATCCA+CGG | 0.629250 | 7:+69681255 | None:intergenic |
| CGTGGTGAGAGCCATGAGCG+AGG | 0.635589 | 7:-69681329 | MsG0780039844.01.T01:CDS |
| ATATGCACAGATCAAAAGAA+CGG | 0.645466 | 7:-69681391 | MsG0780039844.01.T01:CDS |
| ACGGAGTAGGGATCGTGACA+GGG | 0.652302 | 7:-69681372 | MsG0780039844.01.T01:CDS |
| GGGCAACCAAGTCGATGACA+GGG | 0.652657 | 7:+69680636 | None:intergenic |
| GAGGGCGAGACAATGATCGT+AGG | 0.664594 | 7:-69681310 | MsG0780039844.01.T01:CDS |
| ATGATTCAAGAAGTCGCCGG+AGG | 0.695304 | 7:-69681214 | MsG0780039844.01.T01:CDS |
| AGGCACCATGATAGAGACCG+TGG | 0.701940 | 7:-69681272 | MsG0780039844.01.T01:CDS |
| GGCGACTTCTTGAATCATAG+CGG | 0.719406 | 7:+69681219 | None:intergenic |
| GCTATGATTCAAGAAGTCGC+CGG | 0.727551 | 7:-69681217 | MsG0780039844.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAATTTTTATATTATCTA+TGG | - | Chr7:69681078-69681097 | MsG0780039844.01.T01:intron | 10.0% |
| ! | AAAATTATTTGTCCAAGACA+AGG | + | Chr7:69681214-69681233 | None:intergenic | 25.0% |
| ! | AGGAAGTAGTAATAAAGAAA+TGG | + | Chr7:69680894-69680913 | None:intergenic | 25.0% |
| ! | ATTGAACAATATCTGAATGA+TGG | - | Chr7:69681241-69681260 | MsG0780039844.01.T01:CDS | 25.0% |
| ! | TATCACATCCATAAGATTTA+TGG | + | Chr7:69681164-69681183 | None:intergenic | 25.0% |
| GATCAAATATGAGTGATACA+AGG | - | Chr7:69680961-69680980 | MsG0780039844.01.T01:intron | 30.0% | |
| ATAAGATGTGTAGTCTAGGT+GGG | - | Chr7:69681181-69681200 | MsG0780039844.01.T01:CDS | 35.0% | |
| CAAGCAAATTATACATCACG+AGG | + | Chr7:69681032-69681051 | None:intergenic | 35.0% | |
| TATAGGAGTGACAATCAAGT+AGG | + | Chr7:69681004-69681023 | None:intergenic | 35.0% | |
| TGTGATAAGATGTGTAGTCT+AGG | - | Chr7:69681177-69681196 | MsG0780039844.01.T01:CDS | 35.0% | |
| ! | ACATTTGACCCCTTCTTTTT+GGG | - | Chr7:69680915-69680934 | MsG0780039844.01.T01:intron | 35.0% |
| !! | GCTTAGGTGTTGCTAAATTA+TGG | - | Chr7:69681275-69681294 | MsG0780039844.01.T01:CDS | 35.0% |
| !! | TATGGTTTGATGTTGCTTTG+CGG | - | Chr7:69681293-69681312 | MsG0780039844.01.T01:CDS | 35.0% |
| AAAAAGGCCCCAAAAAGAAG+GGG | + | Chr7:69680926-69680945 | None:intergenic | 40.0% | |
| AAAAGAAGGGGTCAAATGTG+AGG | + | Chr7:69680914-69680933 | None:intergenic | 40.0% | |
| ACAGATCAAAAGAACGGAGT+AGG | - | Chr7:69680640-69680659 | MsG0780039844.01.T01:three_prime_UTR | 40.0% | |
| AGAAAAAGGCCCCAAAAAGA+AGG | + | Chr7:69680928-69680947 | None:intergenic | 40.0% | |
| AGCAGCTGCCATAAATCTTA+TGG | - | Chr7:69681153-69681172 | MsG0780039844.01.T01:intron | 40.0% | |
| CAGATCAAAAGAACGGAGTA+GGG | - | Chr7:69680641-69680660 | MsG0780039844.01.T01:three_prime_UTR | 40.0% | |
| CTAGAGATTATGATCGTCAC+AGG | - | Chr7:69680853-69680872 | MsG0780039844.01.T01:three_prime_UTR | 40.0% | |
| GAAAAAGGCCCCAAAAAGAA+GGG | + | Chr7:69680927-69680946 | None:intergenic | 40.0% | |
| GATAAGATGTGTAGTCTAGG+TGG | - | Chr7:69681180-69681199 | MsG0780039844.01.T01:CDS | 40.0% | |
| GATGGATGTAACTTGAGCTT+AGG | - | Chr7:69681259-69681278 | MsG0780039844.01.T01:CDS | 40.0% | |
| TACATCACGAGGAACACTAT+AGG | + | Chr7:69681021-69681040 | None:intergenic | 40.0% | |
| TATGAGTGATACAAGGTTCC+AGG | - | Chr7:69680968-69680987 | MsG0780039844.01.T01:intron | 40.0% | |
| ! | CACATTTGACCCCTTCTTTT+TGG | - | Chr7:69680914-69680933 | MsG0780039844.01.T01:intron | 40.0% |
| ! | CATTTGACCCCTTCTTTTTG+GGG | - | Chr7:69680916-69680935 | MsG0780039844.01.T01:intron | 40.0% |
| ! | CGTTCTTTTGATCTGTGCAT+GGG | + | Chr7:69680636-69680655 | None:intergenic | 40.0% |
| ACCGTGGATATGATCGAGAT+CGG | - | Chr7:69680769-69680788 | MsG0780039844.01.T01:three_prime_UTR | 45.0% | |
| CATATCCACGGTCTCTATCA+TGG | + | Chr7:69680761-69680780 | None:intergenic | 45.0% | |
| CCACTCGCACTTGTAGAAAA+AGG | + | Chr7:69680942-69680961 | None:intergenic | 45.0% | |
| GCGACTTCTTGAATCATAGC+GGG | + | Chr7:69680808-69680827 | None:intergenic | 45.0% | |
| GCTATGATTCAAGAAGTCGC+CGG | - | Chr7:69680808-69680827 | MsG0780039844.01.T01:three_prime_UTR | 45.0% | |
| GGCGACTTCTTGAATCATAG+CGG | + | Chr7:69680809-69680828 | None:intergenic | 45.0% | |
| ! | CCGTTCTTTTGATCTGTGCA+TGG | + | Chr7:69680637-69680656 | None:intergenic | 45.0% |
| ! | CCTTTTTCTACAAGTGCGAG+TGG | - | Chr7:69680939-69680958 | MsG0780039844.01.T01:intron | 45.0% |
| !! | TGTTTTCCCTGTCATCGACT+TGG | - | Chr7:69681383-69681402 | MsG0780039844.01.T01:CDS | 45.0% |
| ATGATTCAAGAAGTCGCCGG+AGG | - | Chr7:69680811-69680830 | MsG0780039844.01.T01:three_prime_UTR | 50.0% | |
| CAAGTAGGCACTACTGATCC+TGG | + | Chr7:69680989-69681008 | None:intergenic | 50.0% | |
| CAGCAAGACAGGTTAGTACG+AGG | + | Chr7:69681107-69681126 | None:intergenic | 50.0% | |
| CCCGATCTCGATCATATCCA+CGG | + | Chr7:69680773-69680792 | None:intergenic | 50.0% | |
| CCGTGGATATGATCGAGATC+GGG | - | Chr7:69680770-69680789 | MsG0780039844.01.T01:three_prime_UTR | 50.0% | |
| ! | GTTTTGCCAGGCGTCATGAT+CGG | - | Chr7:69681126-69681145 | MsG0780039844.01.T01:intron | 50.0% |
| !! | GTGGGTGTTGAACCTTGTCT+TGG | - | Chr7:69681199-69681218 | MsG0780039844.01.T01:CDS | 50.0% |
| !!! | ACCTGTCTTGCTGTTTTGCC+AGG | - | Chr7:69681114-69681133 | MsG0780039844.01.T01:intron | 50.0% |
| AACGGAGTAGGGATCGTGAC+AGG | - | Chr7:69680652-69680671 | MsG0780039844.01.T01:three_prime_UTR | 55.0% | |
| ACGGAGTAGGGATCGTGACA+GGG | - | Chr7:69680653-69680672 | MsG0780039844.01.T01:three_prime_UTR | 55.0% | |
| AGGCACCATGATAGAGACCG+TGG | - | Chr7:69680753-69680772 | MsG0780039844.01.T01:three_prime_UTR | 55.0% | |
| ATCGTGACAGGGAGCCTAGT+AGG | - | Chr7:69680664-69680683 | MsG0780039844.01.T01:three_prime_UTR | 55.0% | |
| CATGGCTCTCACCACGTTCA+CGG | + | Chr7:69680692-69680711 | None:intergenic | 55.0% | |
| GAGGGCGAGACAATGATCGT+AGG | - | Chr7:69680715-69680734 | MsG0780039844.01.T01:three_prime_UTR | 55.0% | |
| GCCTGGCAAAACAGCAAGAC+AGG | + | Chr7:69681118-69681137 | None:intergenic | 55.0% | |
| GGGCAACCAAGTCGATGACA+GGG | + | Chr7:69681392-69681411 | None:intergenic | 55.0% | |
| GTAGGAGCAGAGATCGTGAC+AGG | - | Chr7:69680733-69680752 | MsG0780039844.01.T01:three_prime_UTR | 55.0% | |
| TCGTGACAGGGAGCCTAGTA+GGG | - | Chr7:69680665-69680684 | MsG0780039844.01.T01:three_prime_UTR | 55.0% | |
| !! | CTAGTACCGATCATGACGCC+TGG | + | Chr7:69681135-69681154 | None:intergenic | 55.0% |
| CATTGTCTCGCCCTCGCTCA+TGG | + | Chr7:69680710-69680729 | None:intergenic | 60.0% | |
| CCACGTTCACGGTCCCTACT+AGG | + | Chr7:69680681-69680700 | None:intergenic | 60.0% | |
| CCTAGTAGGGACCGTGAACG+TGG | - | Chr7:69680678-69680697 | MsG0780039844.01.T01:three_prime_UTR | 60.0% | |
| GCTCTCGAGATCGTGACCTC+CGG | + | Chr7:69680830-69680849 | None:intergenic | 60.0% | |
| GTGGTGAGAGCCATGAGCGA+GGG | - | Chr7:69680697-69680716 | MsG0780039844.01.T01:three_prime_UTR | 60.0% | |
| CGTGGTGAGAGCCATGAGCG+AGG | - | Chr7:69680696-69680715 | MsG0780039844.01.T01:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 69680636 | 69681411 | 69680636 | ID=MsG0780039844.01;Name=MsG0780039844.01 |
| Chr7 | mRNA | 69680636 | 69681411 | 69680636 | ID=MsG0780039844.01.T01;Parent=MsG0780039844.01;Name=MsG0780039844.01.T01;_AED=0.46;_eAED=0.46;_QI=0|1|0.5|1|0|0|2|257|85 |
| Chr7 | exon | 69680636 | 69680911 | 69680636 | ID=MsG0780039844.01.T01:exon:12716;Parent=MsG0780039844.01.T01 |
| Chr7 | exon | 69681173 | 69681411 | 69681173 | ID=MsG0780039844.01.T01:exon:12715;Parent=MsG0780039844.01.T01 |
| Chr7 | CDS | 69681173 | 69681411 | 69681173 | ID=MsG0780039844.01.T01:cds;Parent=MsG0780039844.01.T01 |
| Chr7 | CDS | 69680893 | 69680911 | 69680893 | ID=MsG0780039844.01.T01:cds;Parent=MsG0780039844.01.T01 |
| Chr7 | three_prime_UTR | 69680636 | 69680892 | 69680636 | ID=MsG0780039844.01.T01:three_prime_utr;Parent=MsG0780039844.01.T01 |
| Gene Sequence |
| Protein sequence |
