AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041463.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041463.01.T01 MTR_7g111600 93.750 144 9 0 1 144 1 144 1.93e-75 229
MsG0780041463.01.T01 MTR_7g111600 93.750 144 9 0 1 144 1 144 4.46e-75 231
MsG0780041463.01.T01 MTR_7g111600 92.857 126 9 0 1 126 1 126 1.01e-61 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 81 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAAGAAATTGTGTTTC+TGG 0.151251 7:+91231387 None:intergenic
ACATCATCTCCAGTAGGTTT+TGG 0.266537 7:-91229576 MsG0780041463.01.T01:CDS
GCTGGATTTGTTGGTGATAA+TGG 0.267994 7:+91230974 None:intergenic
TTTGCTAAGCTGCATGGTTC+TGG 0.314068 7:-91229505 MsG0780041463.01.T01:CDS
AGTCCTCCATCTTCTTCTTC+AGG 0.320635 7:-91230818 MsG0780041463.01.T01:CDS
ATAAAGGAGTATTGAAGCTT+TGG 0.339783 7:-91231717 MsG0780041463.01.T01:five_prime_UTR
TGCATCTTCCCATCAGCTTC+AGG 0.344512 7:-91230445 MsG0780041463.01.T01:CDS
TTGTAACAGATCACAAGATT+TGG 0.357056 7:-91231129 MsG0780041463.01.T01:CDS
CCACCACCATCACCATTATC+AGG 0.376324 7:-91230887 MsG0780041463.01.T01:CDS
GTTCCTGTTCCTCCTGATAA+TGG 0.379708 7:+91230875 None:intergenic
GGTGAATTTGCTGGATTTGT+TGG 0.382630 7:+91230965 None:intergenic
CATGGTTCTGGTGACATTAT+TGG 0.382811 7:-91229493 MsG0780041463.01.T01:CDS
TTGGATTCCTCTCATTCAAC+TGG 0.389358 7:-91229537 MsG0780041463.01.T01:CDS
GGAACTGTTGGTGGTGTAAC+AGG 0.393025 7:+91230938 None:intergenic
TGTGTTTCTGGAATTTAGAA+TGG 0.403661 7:+91231399 None:intergenic
AGATAACGCACTTTGTATAA+AGG 0.409227 7:-91231733 MsG0780041463.01.T01:five_prime_UTR
GGAGGAGCTGGCGCAGGCAC+AGG 0.414477 7:-91230421 MsG0780041463.01.T01:CDS
GCTGGCGCAGGCACAGGCAC+AGG 0.415709 7:-91230415 MsG0780041463.01.T01:CDS
GGCACAGGCACAGGCACATC+CGG 0.418093 7:-91230406 MsG0780041463.01.T01:CDS
TTCACTGGTGTTGTTCCTCC+TGG 0.427069 7:+91230917 None:intergenic
GATGCAAGTAGAAGCTTCAT+TGG 0.437577 7:+91231360 None:intergenic
GTTACACCACCAACAGTTCC+AGG 0.439114 7:-91230935 MsG0780041463.01.T01:CDS
ACAGGTACTGGTGAATTTGC+TGG 0.439151 7:+91230956 None:intergenic
GTTGTTCCTCCTGGAACTGT+TGG 0.460619 7:+91230926 None:intergenic
TCAGCTTCAGGAGGAGGAGC+TGG 0.463929 7:-91230433 MsG0780041463.01.T01:CDS
GGTGTTGCACCTGGATTTGT+TGG 0.466876 7:+91231031 None:intergenic
AAACACAATTTCTTTCATCA+TGG 0.468138 7:-91231383 MsG0780041463.01.T01:exon
ACAGCTGGTGGAGTAGTAGA+AGG 0.473175 7:+91230998 None:intergenic
AGAAGAAAATGAGAAAAGAT+AGG 0.477075 7:+91231332 None:intergenic
CAGTGATGATTGTTGGTGAT+GGG 0.480237 7:+91231086 None:intergenic
GTTCCTCCTGGAACTGTTGG+TGG 0.482015 7:+91230929 None:intergenic
TGGGCCGCAAAGCTCTCCAT+TGG 0.483468 7:-91229556 MsG0780041463.01.T01:CDS
TCACCATTATCAGGAGGAAC+AGG 0.487525 7:-91230878 MsG0780041463.01.T01:CDS
TTCCCATCAGCTTCAGGAGG+AGG 0.492744 7:-91230439 MsG0780041463.01.T01:CDS
AGTACCAGAGCTGCAAAAGA+TGG 0.499400 7:+91229599 None:intergenic
TCAGGAGGAGGAGCTGGCGC+AGG 0.502820 7:-91230427 MsG0780041463.01.T01:CDS
CTTTGCGGCCCAAAACCTAC+TGG 0.504420 7:+91229567 None:intergenic
AGAAATAGTTGAAAATGCAT+TGG 0.517953 7:+91231204 None:intergenic
GATGGAGGACTTGTGCTTGA+AGG 0.519243 7:+91230830 None:intergenic
GAGACCTTTGCTAAGCTGCA+TGG 0.522316 7:-91229511 MsG0780041463.01.T01:CDS
GCACAGGCACAGGCACATCC+GGG 0.523253 7:-91230405 MsG0780041463.01.T01:CDS
GAAGGAACAGTGATGATTGT+TGG 0.527796 7:+91231079 None:intergenic
GAAGGTGGAGGATTTGTGAC+AGG 0.530909 7:+91230848 None:intergenic
GTTGGAGAAACTGTTGTGAC+AGG 0.533113 7:+91231049 None:intergenic
GAATCCAATGGAGAGCTTTG+CGG 0.535900 7:+91229552 None:intergenic
CCTGATAATGGTGATGGTGG+TGG 0.538366 7:+91230887 None:intergenic
CTCCTCCTCCTGAAGCTGAT+GGG 0.539809 7:+91230437 None:intergenic
TGAAGCTGATGGGAAGATGC+AGG 0.543799 7:+91230447 None:intergenic
CTACCTCCTGAAGAAGAAGA+TGG 0.552545 7:+91230812 None:intergenic
ACAGTGATGATTGTTGGTGA+TGG 0.553424 7:+91231085 None:intergenic
GTTCCTCCTGATAATGGTGA+TGG 0.553903 7:+91230881 None:intergenic
GCTCCTCCTCCTGAAGCTGA+TGG 0.558816 7:+91230436 None:intergenic
GGACTTGTGCTTGAAGGTGG+AGG 0.559600 7:+91230836 None:intergenic
GTTGGTGATAATGGAACAGC+TGG 0.559840 7:+91230983 None:intergenic
GTAGTAGAAGGAACTGTGAC+AGG 0.561662 7:+91231010 None:intergenic
ACAGTTTCTCCAACAAATCC+AGG 0.567466 7:-91231040 MsG0780041463.01.T01:CDS
GTACCAGAGCTGCAAAAGAT+GGG 0.574661 7:+91229600 None:intergenic
TTCACGGTTCTCACTTACCC+CGG 0.578172 7:+91230387 None:intergenic
GAACAAGGGAGTACTAATCA+TGG 0.582500 7:-91229633 MsG0780041463.01.T01:CDS
ACATCAATAGGTATGGAACA+AGG 0.584549 7:-91229648 MsG0780041463.01.T01:intron
GTTGGTGGTGTAACAGGTAC+TGG 0.587227 7:+91230944 None:intergenic
ACTGTGACAGGTGTTGCACC+TGG 0.594459 7:+91231022 None:intergenic
GTTGTGACAGGATTGGTTGA+AGG 0.600451 7:+91231061 None:intergenic
CCTCCATCTTCTTCTTCAGG+AGG 0.605110 7:-91230815 MsG0780041463.01.T01:intron
AGAAACTGTTGTGACAGGAT+TGG 0.611206 7:+91231054 None:intergenic
CCTCCTGATAATGGTGATGG+TGG 0.614026 7:+91230884 None:intergenic
TTATTGGTCAGTGGAAGACT+CGG 0.614232 7:-91229477 MsG0780041463.01.T01:CDS
GTTGAATGAGAGGAATCCAA+TGG 0.618258 7:+91229540 None:intergenic
CTGGTGACATTATTGGTCAG+TGG 0.619927 7:-91229486 MsG0780041463.01.T01:CDS
AGAACCATGCAGCTTAGCAA+AGG 0.620135 7:+91229507 None:intergenic
TCTCAGACCAGTTGAATGAG+AGG 0.621991 7:+91229530 None:intergenic
CATCAATAGGTATGGAACAA+GGG 0.622109 7:-91229647 MsG0780041463.01.T01:intron
GGAGGACTTGTGCTTGAAGG+TGG 0.626099 7:+91230833 None:intergenic
ATCTTCCCATCAGCTTCAGG+AGG 0.632762 7:-91230442 MsG0780041463.01.T01:CDS
GGTGATAATGGAACAGCTGG+TGG 0.636040 7:+91230986 None:intergenic
GGTGGTGGATAAGAATTCAC+TGG 0.638656 7:+91230902 None:intergenic
GGTACTACATCATCTCCAGT+AGG 0.642872 7:-91229582 MsG0780041463.01.T01:CDS
CCTCCTGAAGAAGAAGATGG+AGG 0.682773 7:+91230815 None:intergenic
CACAGGCACAGGCACATCCG+GGG 0.683057 7:-91230404 MsG0780041463.01.T01:CDS
CCACCATCACCATTATCAGG+AGG 0.700034 7:-91230884 MsG0780041463.01.T01:CDS
ACACCACCAACAGTTCCAGG+AGG 0.766003 7:-91230932 MsG0780041463.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTGATTTTATCTTT+TGG + Chr7:91231179-91231198 None:intergenic 15.0%
!!! TTTGTGTTTTAGAAATTTTA+AGG - Chr7:91230981-91231000 MsG0780041463.01.T01:CDS 15.0%
!!! TTTTCAACTTATTTTCATAA+GGG + Chr7:91231436-91231455 None:intergenic 15.0%
!! AATATGTTTCTTTGATACTA+AGG + Chr7:91229632-91229651 None:intergenic 20.0%
!! ATAAGCTATAAGCTTAAAAA+TGG + Chr7:91231260-91231279 None:intergenic 20.0%
!! ATACTCAATTCAAATATCTA+CGG - Chr7:91230925-91230944 MsG0780041463.01.T01:CDS 20.0%
!! ATTATAGATTAGATCTTACT+AGG + Chr7:91230679-91230698 None:intergenic 20.0%
!! ATTTGAATTGAGTATCTTAT+TGG + Chr7:91230920-91230939 None:intergenic 20.0%
!! TAAGCTATAAGCTTAAAAAT+GGG + Chr7:91231259-91231278 None:intergenic 20.0%
!! TCAAGCATAATATGAAAATT+AGG + Chr7:91230712-91230731 None:intergenic 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG - Chr7:91231443-91231462 MsG0780041463.01.T01:intron 20.0%
!!! AATATCTAAAACTAGCTTAT+AGG + Chr7:91231373-91231392 None:intergenic 20.0%
!!! ATATCTAAAACTAGCTTATA+GGG + Chr7:91231372-91231391 None:intergenic 20.0%
!!! CATGACAGAAATTTTTTTAA+AGG + Chr7:91229749-91229768 None:intergenic 20.0%
!!! GTTTTCAACTTATTTTCATA+AGG + Chr7:91231437-91231456 None:intergenic 20.0%
! AAACACAATTTCTTTCATCA+TGG - Chr7:91229854-91229873 MsG0780041463.01.T01:intron 25.0%
! ACTAAGCTTAATACATCAAT+AGG - Chr7:91231577-91231596 MsG0780041463.01.T01:intron 25.0%
! AGAAATAGTTGAAAATGCAT+TGG + Chr7:91230036-91230055 None:intergenic 25.0%
! AGAAGAAAATGAGAAAAGAT+AGG + Chr7:91229908-91229927 None:intergenic 25.0%
! GTGTAAAATAGCATTAAACA+AGG + Chr7:91229979-91229998 None:intergenic 25.0%
!! AATGCATTTTCAACTATTTC+TGG - Chr7:91230035-91230054 MsG0780041463.01.T01:intron 25.0%
!! ATTTTTCTTCTTTGTGCAAA+TGG - Chr7:91229576-91229595 MsG0780041463.01.T01:CDS 25.0%
!! GTTACAAAAAGACATTGATT+AGG + Chr7:91231007-91231026 None:intergenic 25.0%
!! TATCTAAAACTAGCTTATAG+GGG + Chr7:91231371-91231390 None:intergenic 25.0%
!! TGATACTAAGGAAATGTTTT+TGG + Chr7:91229620-91229639 None:intergenic 25.0%
!!! AAGTTGTTTTCACTTTTCAT+AGG - Chr7:91231218-91231237 MsG0780041463.01.T01:intron 25.0%
!!! AGTATCTTATTGGCTTAAAA+AGG + Chr7:91230910-91230929 None:intergenic 25.0%
!!! AGTTGTTTTCACTTTTCATA+GGG - Chr7:91231219-91231238 MsG0780041463.01.T01:intron 25.0%
AGATAACGCACTTTGTATAA+AGG - Chr7:91229504-91229523 MsG0780041463.01.T01:CDS 30.0%
AGCATAATTTAGACCTTGTT+TGG - Chr7:91231080-91231099 MsG0780041463.01.T01:CDS 30.0%
GATGAAAGAAATTGTGTTTC+TGG + Chr7:91229853-91229872 None:intergenic 30.0%
GATTGTTCACAAATAAACCA+AGG - Chr7:91230526-91230545 MsG0780041463.01.T01:intron 30.0%
GCTTAATACATCAATAGGTA+TGG - Chr7:91231582-91231601 MsG0780041463.01.T01:intron 30.0%
TTAAGCTGTATATCCAAACA+AGG + Chr7:91231096-91231115 None:intergenic 30.0%
TTGACTAAAAAAGACCAGTT+TGG - Chr7:91231295-91231314 MsG0780041463.01.T01:intron 30.0%
TTGTAACAGATCACAAGATT+TGG - Chr7:91230108-91230127 MsG0780041463.01.T01:intron 30.0%
! ACCTTTATACCTTTAGTTCA+AGG - Chr7:91229718-91229737 MsG0780041463.01.T01:intron 30.0%
! GAACTAAAGGTATAAAGGTT+AGG + Chr7:91229717-91229736 None:intergenic 30.0%
! TATACCTTTAGTTCAAGGAT+AGG - Chr7:91229723-91229742 MsG0780041463.01.T01:intron 30.0%
! TCCTTGAACTAAAGGTATAA+AGG + Chr7:91229722-91229741 None:intergenic 30.0%
! TTTCTCATTTTCTTCTGTTC+TGG - Chr7:91229912-91229931 MsG0780041463.01.T01:intron 30.0%
!! ATAAAGGAGTATTGAAGCTT+TGG - Chr7:91229520-91229539 MsG0780041463.01.T01:CDS 30.0%
!! GCTACTTTCAAATTCTTTTC+AGG - Chr7:91230008-91230027 MsG0780041463.01.T01:intron 30.0%
!! GGAATGAGAACTTTGAAATA+TGG - Chr7:91231043-91231062 MsG0780041463.01.T01:CDS 30.0%
!! TGTGTTTCTGGAATTTAGAA+TGG + Chr7:91229841-91229860 None:intergenic 30.0%
!!! TTCTGAAACTGTTTTAGACA+TGG + Chr7:91231469-91231488 None:intergenic 30.0%
ACATCAATAGGTATGGAACA+AGG - Chr7:91231589-91231608 MsG0780041463.01.T01:intron 35.0%
ATACACATTACGAGTCTGTT+TGG + Chr7:91231528-91231547 None:intergenic 35.0%
ATCTACACTTCAAACAGCAT+TGG - Chr7:91230477-91230496 MsG0780041463.01.T01:intron 35.0%
CAAAGTTCTCATTCCATCTA+AGG + Chr7:91231038-91231057 None:intergenic 35.0%
CATCAATAGGTATGGAACAA+GGG - Chr7:91231590-91231609 MsG0780041463.01.T01:intron 35.0%
TAATGAAAGCTTTCCCTTCA+CGG + Chr7:91230869-91230888 None:intergenic 35.0%
TACACATTACGAGTCTGTTT+GGG + Chr7:91231527-91231546 None:intergenic 35.0%
TATAGGGGATGAACATATAG+TGG + Chr7:91231356-91231375 None:intergenic 35.0%
TGTTCACAAATAAACCAAGG+TGG - Chr7:91230529-91230548 MsG0780041463.01.T01:intron 35.0%
TGTTGAATGCAAAAGAAGCA+TGG + Chr7:91230585-91230604 None:intergenic 35.0%
TTTGAATTGTGACTAGGTTC+TGG - Chr7:91230765-91230784 MsG0780041463.01.T01:intron 35.0%
! ACTAGGATTAGTGCTAGTAA+TGG + Chr7:91230662-91230681 None:intergenic 35.0%
! CTCTCTTTTGAATTGTGACT+AGG - Chr7:91230759-91230778 MsG0780041463.01.T01:intron 35.0%
!!! GACTTTGAGATCTTGCTTTT+TGG + Chr7:91230074-91230093 None:intergenic 35.0%
!!! GCATGGTTTTGAAGTGAATT+TGG + Chr7:91230568-91230587 None:intergenic 35.0%
!!! TTGAGATCTTGCTTTTTGGA+AGG + Chr7:91230070-91230089 None:intergenic 35.0%
AAGGCCTATCCTTGAACTAA+AGG + Chr7:91229730-91229749 None:intergenic 40.0%
ACAGTTTCTCCAACAAATCC+AGG - Chr7:91230197-91230216 MsG0780041463.01.T01:intron 40.0%
AGAAACTGTTGTGACAGGAT+TGG + Chr7:91230186-91230205 None:intergenic 40.0%
GAAGGAACAGTGATGATTGT+TGG + Chr7:91230161-91230180 None:intergenic 40.0%
GACTATGCTTGTGGAACAAA+AGG - Chr7:91230499-91230518 MsG0780041463.01.T01:intron 40.0%
GATGCAAGTAGAAGCTTCAT+TGG + Chr7:91229880-91229899 None:intergenic 40.0%
GTAACCAAACCTACCTTAGA+TGG - Chr7:91231022-91231041 MsG0780041463.01.T01:CDS 40.0%
GTTGAATGAGAGGAATCCAA+TGG + Chr7:91231700-91231719 None:intergenic 40.0%
TTATTGGTCAGTGGAAGACT+CGG - Chr7:91231760-91231779 MsG0780041463.01.T01:five_prime_UTR 40.0%
TTGGATTCCTCTCATTCAAC+TGG - Chr7:91231700-91231719 MsG0780041463.01.T01:five_prime_UTR 40.0%
! ACAGTGATGATTGTTGGTGA+TGG + Chr7:91230155-91230174 None:intergenic 40.0%
! ACATCATCTCCAGTAGGTTT+TGG - Chr7:91231661-91231680 MsG0780041463.01.T01:intron 40.0%
! ATTACGAGTCTGTTTGGGAT+TGG + Chr7:91231522-91231541 None:intergenic 40.0%
! CACTTTTCATAGGGTCTGTA+TGG - Chr7:91231228-91231247 MsG0780041463.01.T01:intron 40.0%
! CATCATCTCCAGTAGGTTTT+GGG - Chr7:91231662-91231681 MsG0780041463.01.T01:five_prime_UTR 40.0%
! CATTCCATCTAAGGTAGGTT+TGG + Chr7:91231029-91231048 None:intergenic 40.0%
! GCTGTTTGAAGTGTAGATTG+TGG + Chr7:91230475-91230494 None:intergenic 40.0%
! GGAATTTAGAATGGAGCTGT+TGG + Chr7:91229832-91229851 None:intergenic 40.0%
! GTTCTCATTCCATCTAAGGT+AGG + Chr7:91231034-91231053 None:intergenic 40.0%
!! CAGTGATGATTGTTGGTGAT+GGG + Chr7:91230154-91230173 None:intergenic 40.0%
!! CATGGTTCTGGTGACATTAT+TGG - Chr7:91231744-91231763 MsG0780041463.01.T01:five_prime_UTR 40.0%
!! GAACAAGGGAGTACTAATCA+TGG - Chr7:91231604-91231623 MsG0780041463.01.T01:intron 40.0%
!! GCTGGATTTGTTGGTGATAA+TGG + Chr7:91230266-91230285 None:intergenic 40.0%
!! GGTGAATTTGCTGGATTTGT+TGG + Chr7:91230275-91230294 None:intergenic 40.0%
AACAGAGCCACAAGCTATCT+TGG - Chr7:91231408-91231427 MsG0780041463.01.T01:intron 45.0%
AGAACCATGCAGCTTAGCAA+AGG + Chr7:91231733-91231752 None:intergenic 45.0%
AGTACCAGAGCTGCAAAAGA+TGG + Chr7:91231641-91231660 None:intergenic 45.0%
AGTCCTCCATCTTCTTCTTC+AGG - Chr7:91230419-91230438 MsG0780041463.01.T01:CDS 45.0%
AGTGTAGATTGTGGTGTTCC+AGG + Chr7:91230466-91230485 None:intergenic 45.0%
CAACAAGCTGTGACTTTGGA+GGG - Chr7:91230629-91230648 MsG0780041463.01.T01:intron 45.0%
CTACCTCCTGAAGAAGAAGA+TGG + Chr7:91230428-91230447 None:intergenic 45.0%
CTGGTGACATTATTGGTCAG+TGG - Chr7:91231751-91231770 MsG0780041463.01.T01:five_prime_UTR 45.0%
GAAGGTGACGTTTACCAAAC+TGG + Chr7:91231312-91231331 None:intergenic 45.0%
GAATCCAATGGAGAGCTTTG+CGG + Chr7:91231688-91231707 None:intergenic 45.0%
GATTGTAACAGCTACCACCT+TGG + Chr7:91230546-91230565 None:intergenic 45.0%
GGTACTACATCATCTCCAGT+AGG - Chr7:91231655-91231674 MsG0780041463.01.T01:intron 45.0%
GTACCAGAGCTGCAAAAGAT+GGG + Chr7:91231640-91231659 None:intergenic 45.0%
GTAGTAGAAGGAACTGTGAC+AGG + Chr7:91230230-91230249 None:intergenic 45.0%
GTTCCTGTTCCTCCTGATAA+TGG + Chr7:91230365-91230384 None:intergenic 45.0%
GTTGGAGAAACTGTTGTGAC+AGG + Chr7:91230191-91230210 None:intergenic 45.0%
TCACCATTATCAGGAGGAAC+AGG - Chr7:91230359-91230378 MsG0780041463.01.T01:intron 45.0%
TCTCAGACCAGTTGAATGAG+AGG + Chr7:91231710-91231729 None:intergenic 45.0%
TTCTTCTTCAGGAGGTAGCT+GGG - Chr7:91230430-91230449 MsG0780041463.01.T01:CDS 45.0%
TTTGCTAAGCTGCATGGTTC+TGG - Chr7:91231732-91231751 MsG0780041463.01.T01:five_prime_UTR 45.0%
! AACAAGCTGTGACTTTGGAG+GGG - Chr7:91230630-91230649 MsG0780041463.01.T01:intron 45.0%
! ACAGCATTGGACTATGCTTG+TGG - Chr7:91230490-91230509 MsG0780041463.01.T01:intron 45.0%
! AGATAGCTTGTGGCTCTGTT+TGG + Chr7:91231408-91231427 None:intergenic 45.0%
! ATTCCCATCTTTTGCAGCTC+TGG - Chr7:91231634-91231653 MsG0780041463.01.T01:intron 45.0%
!! ACAGGTACTGGTGAATTTGC+TGG + Chr7:91230284-91230303 None:intergenic 45.0%
!! GGTGGTGGATAAGAATTCAC+TGG + Chr7:91230338-91230357 None:intergenic 45.0%
!! GTTCCTCCTGATAATGGTGA+TGG + Chr7:91230359-91230378 None:intergenic 45.0%
!! GTTGGTGATAATGGAACAGC+TGG + Chr7:91230257-91230276 None:intergenic 45.0%
!! GTTGTGACAGGATTGGTTGA+AGG + Chr7:91230179-91230198 None:intergenic 45.0%
AAGGGCTCCAAGATAGCTTG+TGG + Chr7:91231418-91231437 None:intergenic 50.0%
ACAGCTGGTGGAGTAGTAGA+AGG + Chr7:91230242-91230261 None:intergenic 50.0%
ATCTTCCCATCAGCTTCAGG+AGG - Chr7:91230795-91230814 MsG0780041463.01.T01:intron 50.0%
CCACCACCATCACCATTATC+AGG - Chr7:91230350-91230369 MsG0780041463.01.T01:intron 50.0%
CCACCATCACCATTATCAGG+AGG - Chr7:91230353-91230372 MsG0780041463.01.T01:intron 50.0%
CCTCCATCTTCTTCTTCAGG+AGG - Chr7:91230422-91230441 MsG0780041463.01.T01:CDS 50.0%
CCTCCTGAAGAAGAAGATGG+AGG + Chr7:91230425-91230444 None:intergenic 50.0%
CTTCTTCTTCAGGAGGTAGC+TGG - Chr7:91230429-91230448 MsG0780041463.01.T01:CDS 50.0%
GAAGGTGGAGGATTTGTGAC+AGG + Chr7:91230392-91230411 None:intergenic 50.0%
GAGACCTTTGCTAAGCTGCA+TGG - Chr7:91231726-91231745 MsG0780041463.01.T01:five_prime_UTR 50.0%
GATGGAGGACTTGTGCTTGA+AGG + Chr7:91230410-91230429 None:intergenic 50.0%
GCAACAAGCTGTGACTTTGG+AGG - Chr7:91230628-91230647 MsG0780041463.01.T01:intron 50.0%
GCTGATAAGCTCGTGTGAGA+AGG + Chr7:91231330-91231349 None:intergenic 50.0%
GCTGCAACAAGCTGTGACTT+TGG - Chr7:91230625-91230644 MsG0780041463.01.T01:intron 50.0%
GGGTAAGTGAGAACCGTGAA+GGG - Chr7:91230853-91230872 MsG0780041463.01.T01:CDS 50.0%
GTTACACCACCAACAGTTCC+AGG - Chr7:91230302-91230321 MsG0780041463.01.T01:intron 50.0%
GTTGTTCCTCCTGGAACTGT+TGG + Chr7:91230314-91230333 None:intergenic 50.0%
TGAAGCTGATGGGAAGATGC+AGG + Chr7:91230793-91230812 None:intergenic 50.0%
TGCATCTTCCCATCAGCTTC+AGG - Chr7:91230792-91230811 MsG0780041463.01.T01:intron 50.0%
TTCACGGTTCTCACTTACCC+CGG + Chr7:91230853-91230872 None:intergenic 50.0%
! GGTGTTGCACCTGGATTTGT+TGG + Chr7:91230209-91230228 None:intergenic 50.0%
!! AAGTCACAGCTTGTTGCAGC+AGG + Chr7:91230625-91230644 None:intergenic 50.0%
!! CCTCCTGATAATGGTGATGG+TGG + Chr7:91230356-91230375 None:intergenic 50.0%
!! CCTGATAATGGTGATGGTGG+TGG + Chr7:91230353-91230372 None:intergenic 50.0%
!! GGAACTGTTGGTGGTGTAAC+AGG + Chr7:91230302-91230321 None:intergenic 50.0%
!! GGTGATAATGGAACAGCTGG+TGG + Chr7:91230254-91230273 None:intergenic 50.0%
!! GTTGGTGGTGTAACAGGTAC+TGG + Chr7:91230296-91230315 None:intergenic 50.0%
!! TTCACTGGTGTTGTTCCTCC+TGG + Chr7:91230323-91230342 None:intergenic 50.0%
ACACCACCAACAGTTCCAGG+AGG - Chr7:91230305-91230324 MsG0780041463.01.T01:intron 55.0%
CTCCTCCTCCTGAAGCTGAT+GGG + Chr7:91230803-91230822 None:intergenic 55.0%
CTTTGCGGCCCAAAACCTAC+TGG + Chr7:91231673-91231692 None:intergenic 55.0%
GGACTTGTGCTTGAAGGTGG+AGG + Chr7:91230404-91230423 None:intergenic 55.0%
GGAGGACTTGTGCTTGAAGG+TGG + Chr7:91230407-91230426 None:intergenic 55.0%
GGGGTAAGTGAGAACCGTGA+AGG - Chr7:91230852-91230871 MsG0780041463.01.T01:CDS 55.0%
GTTCCTCCTGGAACTGTTGG+TGG + Chr7:91230311-91230330 None:intergenic 55.0%
TAGCTGGGTGTGGCTAAACC+TGG - Chr7:91230445-91230464 MsG0780041463.01.T01:CDS 55.0%
TTCCCATCAGCTTCAGGAGG+AGG - Chr7:91230798-91230817 MsG0780041463.01.T01:intron 55.0%
! ACTGTGACAGGTGTTGCACC+TGG + Chr7:91230218-91230237 None:intergenic 55.0%
CTTCAGGAGGTAGCTGGGTG+TGG - Chr7:91230435-91230454 MsG0780041463.01.T01:CDS 60.0%
GCTCCTCCTCCTGAAGCTGA+TGG + Chr7:91230804-91230823 None:intergenic 60.0%
TCAGCTTCAGGAGGAGGAGC+TGG - Chr7:91230804-91230823 MsG0780041463.01.T01:intron 60.0%
TGGGCCGCAAAGCTCTCCAT+TGG - Chr7:91231681-91231700 MsG0780041463.01.T01:five_prime_UTR 60.0%
CACAGGCACAGGCACATCCG+GGG - Chr7:91230833-91230852 MsG0780041463.01.T01:CDS 65.0%
GCACAGGCACAGGCACATCC+GGG - Chr7:91230832-91230851 MsG0780041463.01.T01:CDS 65.0%
GGCACAGGCACAGGCACATC+CGG - Chr7:91230831-91230850 MsG0780041463.01.T01:CDS 65.0%
TCAGGAGGAGGAGCTGGCGC+AGG - Chr7:91230810-91230829 MsG0780041463.01.T01:intron 70.0%
GCTGGCGCAGGCACAGGCAC+AGG - Chr7:91230822-91230841 MsG0780041463.01.T01:CDS 75.0%
GGAGGAGCTGGCGCAGGCAC+AGG - Chr7:91230816-91230835 MsG0780041463.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 91229464 91231795 91229464 ID=MsG0780041463.01;Name=MsG0780041463.01
Chr7 mRNA 91229464 91231795 91229464 ID=MsG0780041463.01.T01;Parent=MsG0780041463.01;Name=MsG0780041463.01.T01;_AED=0.35;_eAED=0.35;_QI=171|0.5|0.4|1|0|0|5|0|252
Chr7 exon 91229464 91229660 91229464 ID=MsG0780041463.01.T01:exon:18492;Parent=MsG0780041463.01.T01
Chr7 exon 91230392 91230478 91230392 ID=MsG0780041463.01.T01:exon:18491;Parent=MsG0780041463.01.T01
Chr7 exon 91230816 91231229 91230816 ID=MsG0780041463.01.T01:exon:18490;Parent=MsG0780041463.01.T01
Chr7 exon 91231326 91231423 91231326 ID=MsG0780041463.01.T01:exon:18489;Parent=MsG0780041463.01.T01
Chr7 exon 91231662 91231795 91231662 ID=MsG0780041463.01.T01:exon:18488;Parent=MsG0780041463.01.T01
Chr7 five_prime_UTR 91231662 91231795 91231662 ID=MsG0780041463.01.T01:five_prime_utr;Parent=MsG0780041463.01.T01
Chr7 five_prime_UTR 91231387 91231423 91231387 ID=MsG0780041463.01.T01:five_prime_utr;Parent=MsG0780041463.01.T01
Chr7 CDS 91231326 91231386 91231326 ID=MsG0780041463.01.T01:cds;Parent=MsG0780041463.01.T01
Chr7 CDS 91230816 91231229 91230816 ID=MsG0780041463.01.T01:cds;Parent=MsG0780041463.01.T01
Chr7 CDS 91230392 91230478 91230392 ID=MsG0780041463.01.T01:cds;Parent=MsG0780041463.01.T01
Chr7 CDS 91229464 91229660 91229464 ID=MsG0780041463.01.T01:cds;Parent=MsG0780041463.01.T01
Gene Sequence

>MsG0780041463.01.T01

ATGGCCAATGAAGCTTCTACTTGCATCTTGTTCCTATCTTTTCTCATTTTCTTCTGTTCTGGAACCAATGCATTTTCAACTATTTCTGGAGCAAGATTCCTTCCAAAAAGCAAGATCTCAAAGTCTCAGATTCAGTTTCTTGTAACAGATCACAAGATTTGGAGAAAACTTCTAGACACAAACCCATCACCAACAATCATCACTGTTCCTTCAACCAATCCTGTCACAACAGTTTCTCCAACAAATCCAGGTGCAACACCTGTCACAGTTCCTTCTACTACTCCACCAGCTGTTCCATTATCACCAACAAATCCAGCAAATTCACCAGTACCTGTTACACCACCAACAGTTCCAGGAGGAACAACACCAGTGAATTCTTATCCACCACCATCACCATTATCAGGAGGAACAGGAACTGTTCCTGTCACAAATCCTCCACCTTCAAGCACAAGTCCTCCATCTTCTTCTTCAGGAGGTTCTGGTACCTGCATCTTCCCATCAGCTTCAGGAGGAGGAGCTGGCGCAGGCACAGGCACAGGCACATCCGGGGTAAGTGAGAACCGTATGGAACAAGGGAGTACTAATCATGGTCTTTTTATTCCCATCTTTTGCAGCTCTGGTACTACATCATCTCCAGTAGGTTTTGGGCCGCAAAGCTCTCCATTGGATTCCTCTCATTCAACTGGTCTGAGACCTTTGCTAAGCTGCATGGTTCTGGTGACATTATTGGTCAGTGGAAGACTCGGCATGAGCCCATAG
Protein sequence

>MsG0780041463.01.T01

MANEASTCILFLSFLIFFCSGTNAFSTISGARFLPKSKISKSQIQFLVTDHKIWRKLLDTNPSPTIITVPSTNPVTTVSPTNPGATPVTVPSTTPPAVPLSPTNPANSPVPVTPPTVPGGTTPVNSYPPPSPLSGGTGTVPVTNPPPSSTSPPSSSSGGSGTCIFPSASGGGAGAGTGTGTSGVSENRMEQGSTNHGLFIPIFCSSGTTSSPVGFGPQSSPLDSSHSTGLRPLLSCMVLVTLLVSGRLGMSP*