AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042150.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042150.01.T01 MTR_8g010000 69.906 319 33 3 1 256 1 319 2.72e-151 424
MsG0880042150.01.T01 MTR_8g010030 64.244 344 35 3 1 256 1 344 2.61e-148 418
MsG0880042150.01.T01 MTR_8g009820 60.580 345 45 5 1 256 60 402 1.84e-134 385
MsG0880042150.01.T01 MTR_8g009980 59.130 345 51 5 1 256 1 344 3.45e-134 382
MsG0880042150.01.T01 MTR_8g010020 62.791 344 8 4 1 256 1 312 8.96e-134 380
MsG0880042150.01.T01 MTR_8g009830 57.971 345 53 6 1 256 1 342 8.51e-130 371
MsG0880042150.01.T01 MTR_8g009840 58.407 339 49 6 1 250 1 336 5.59e-125 365
MsG0880042150.01.T01 MTR_4g082970 50.292 342 80 5 4 256 10 350 6.08e-99 293
MsG0880042150.01.T01 MTR_8g007325 65.625 192 37 3 1 165 1 190 2.86e-83 249
MsG0880042150.01.T01 MTR_7g406860 43.103 348 102 7 1 256 3 346 9.55e-80 244
MsG0880042150.01.T01 MTR_0011s0280 32.370 346 141 5 3 256 2 346 2.40e-55 181
MsG0880042150.01.T01 MTR_5g095030 42.857 133 42 1 156 254 4 136 7.00e-30 109
MsG0880042150.01.T01 MTR_2g088190 28.530 347 147 9 4 253 5 347 3.36e-29 113
MsG0880042150.01.T01 MTR_2g088220 29.275 345 147 8 4 253 6 348 2.80e-26 105
MsG0880042150.01.T01 MTR_2g088200 30.502 259 110 9 4 198 5 257 3.63e-23 96.7
MsG0880042150.01.T01 MTR_5g095020 52.632 57 26 1 29 85 6 61 8.50e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042150.01.T01 AT5G16970 53.216 342 68 6 6 256 5 345 4.74e-115 333
MsG0880042150.01.T01 AT5G17000 53.509 342 67 6 6 256 5 345 3.61e-114 332
MsG0880042150.01.T01 AT5G16990 53.372 341 68 6 6 256 4 343 2.23e-112 327
MsG0880042150.01.T01 AT1G26320 53.097 339 72 6 4 256 9 346 8.02e-110 320
MsG0880042150.01.T01 AT3G03080 51.734 346 74 6 2 256 7 350 4.12e-109 319
MsG0880042150.01.T01 AT1G26320 52.326 344 72 6 4 256 9 351 4.96e-109 318
MsG0880042150.01.T01 AT5G16960 48.986 345 84 6 1 254 1 344 4.36e-103 303
MsG0880042150.01.T01 AT5G16960 48.986 345 84 6 1 254 1 344 4.36e-103 303
MsG0880042150.01.T01 AT5G37940 48.105 343 85 6 6 256 12 353 5.74e-101 298
MsG0880042150.01.T01 AT5G38000 50.309 324 85 7 6 255 12 333 7.45e-101 297
MsG0880042150.01.T01 AT5G37980 48.547 344 82 7 6 256 12 353 5.07e-100 296
MsG0880042150.01.T01 AT5G38000 46.839 348 90 7 1 255 7 352 1.43e-97 290
MsG0880042150.01.T01 AT5G38000 45.481 343 89 8 1 247 7 347 3.10e-91 273
MsG0880042150.01.T01 AT3G59845 48.256 344 83 8 4 254 5 346 1.63e-90 271
MsG0880042150.01.T01 AT1G65560 43.642 346 100 7 4 256 7 350 1.73e-82 251
MsG0880042150.01.T01 AT5G16980 40.407 344 78 6 1 256 1 305 5.33e-71 220
MsG0880042150.01.T01 AT5G17000 59.788 189 46 4 6 165 5 192 7.77e-71 218
MsG0880042150.01.T01 AT5G16980 48.899 227 28 3 118 256 13 239 2.40e-60 191
MsG0880042150.01.T01 AT5G16980 48.899 227 28 3 118 256 13 239 2.40e-60 191
MsG0880042150.01.T01 AT1G65560 41.697 271 66 4 78 256 4 274 4.07e-58 186
MsG0880042150.01.T01 AT3G59845 46.939 245 40 5 99 254 1 244 1.68e-56 181
MsG0880042150.01.T01 AT5G37960 67.391 46 15 0 206 251 56 101 1.82e-15 70.9

Find 67 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGGTTGATAGAAGCTTT+TGG 0.282161 8:+4381201 None:intergenic
AAGTAAACGTCAATGCCTTC+TGG 0.294778 8:+4378621 None:intergenic
TCATACTATACTGGCATTCT+TGG 0.299905 8:-4380150 MsG0880042150.01.T01:intron
CAGGACAAACTCCAAGAATT+TGG 0.324816 8:+4378422 None:intergenic
ACAACATCGTTGGAACCTTC+TGG 0.330331 8:+4381282 None:intergenic
TCATCTATATGCCAAATTCT+TGG 0.335645 8:-4378433 MsG0880042150.01.T01:CDS
GTTCCTCTTTCATACTATAC+TGG 0.341418 8:-4380159 MsG0880042150.01.T01:CDS
TTATGGTGTGTCTAAAGTTC+TGG 0.342860 8:-4380295 MsG0880042150.01.T01:CDS
AACCATGCAATTTAGCGAAT+TGG 0.343765 8:+4379447 None:intergenic
ATGTAATTGCAGCCGATAAC+TGG 0.344517 8:-4380318 MsG0880042150.01.T01:intron
ATATGCCAACCAAGGCTTCC+GGG 0.359011 8:+4378337 None:intergenic
AATATGCCAACCAAGGCTTC+CGG 0.359999 8:+4378336 None:intergenic
ATATTGAGGTCTGATTCTTT+AGG 0.360299 8:+4381333 None:intergenic
GACACACCATAACCAGTTAT+CGG 0.365873 8:+4380306 None:intergenic
AGGTTCCAACGATGTTGTTT+TGG 0.367348 8:-4381277 MsG0880042150.01.T01:CDS
AATAACAAGCCCTCTTTGTA+TGG 0.380288 8:-4378231 MsG0880042150.01.T01:three_prime_UTR
GGAGCAGTTGGTCAACTTGT+TGG 0.381382 8:-4379470 MsG0880042150.01.T01:CDS
GTGTCTAAAGTTCTGGAATC+TGG 0.394753 8:-4380288 MsG0880042150.01.T01:CDS
TGCTATGTCGTTGGAAGTGC+TGG 0.402479 8:-4379425 MsG0880042150.01.T01:CDS
CTTCTGAAACATTACGTGTC+TGG 0.415851 8:-4381360 MsG0880042150.01.T01:CDS
AGAAGGTAAGGTTGTGTATG+TGG 0.422924 8:-4378388 MsG0880042150.01.T01:CDS
GCCTTGGTTGGCATATTTAG+TGG 0.427792 8:-4378330 MsG0880042150.01.T01:CDS
TTGAAATGTATTTGAGCTGC+AGG 0.432855 8:+4380198 None:intergenic
AGCCATAAACTTACAGATTG+AGG 0.442715 8:+4381168 None:intergenic
CGTTGGAAGTGCTGGAAGTA+AGG 0.454625 8:-4379417 MsG0880042150.01.T01:CDS
TTCTGGAAGCTTAAGACTTA+CGG 0.459893 8:+4381299 None:intergenic
TTGCAGCCGATAACTGGTTA+TGG 0.462292 8:-4380312 MsG0880042150.01.T01:intron
TTTAACCAAAACAACATCGT+TGG 0.463475 8:+4381272 None:intergenic
CTCATAAGAGTCCTCATGTA+AGG 0.474115 8:+4381228 None:intergenic
TGAAGAAAGATTAATACAAA+AGG 0.485443 8:+4378208 None:intergenic
TGAGAAAGGCCCGGAAGCCT+TGG 0.486866 8:-4378346 MsG0880042150.01.T01:CDS
TCAGCTGCCTCTGGAGCAGT+TGG 0.487420 8:-4379482 MsG0880042150.01.T01:intron
AAATTACATGGTCGCATACC+TGG 0.503064 8:-4378552 MsG0880042150.01.T01:intron
GGACACAAAGATTATAAAGA+AGG 0.506959 8:-4380267 MsG0880042150.01.T01:CDS
CTCTTGAATATGAAATTACA+TGG 0.509872 8:-4378564 MsG0880042150.01.T01:CDS
GCCTCATATCAGAGAAGGTA+AGG 0.512782 8:-4378400 MsG0880042150.01.T01:CDS
ACCTTACCTTCTCTGATATG+AGG 0.514350 8:+4378399 None:intergenic
CGGTACTGTCAATAATATTG+AGG 0.531939 8:+4381319 None:intergenic
ATAGCTGAGGGTCTTGAGAA+AGG 0.540813 8:-4378360 MsG0880042150.01.T01:CDS
AGTCCTCATGTAAGGATCAC+AGG 0.545130 8:+4381236 None:intergenic
ACTTACAGATTGAGGAACAT+AGG 0.548541 8:+4381176 None:intergenic
ATAAAGAAGGTGATATTGTG+TGG 0.550971 8:-4380254 MsG0880042150.01.T01:CDS
ATGCCAGTATAGTATGAAAG+AGG 0.552569 8:+4380156 None:intergenic
TACCTTCTCTGATATGAGGC+AGG 0.554222 8:+4378403 None:intergenic
TAAAGAAGGTGATATTGTGT+GGG 0.557070 8:-4380253 MsG0880042150.01.T01:CDS
AAAGGCCCGGAAGCCTTGGT+TGG 0.564505 8:-4378342 MsG0880042150.01.T01:CDS
TTGCATGGTTGCTATGTCGT+TGG 0.566124 8:-4379434 MsG0880042150.01.T01:CDS
GTTTACTTTGAGAACGTTGG+AGG 0.568105 8:-4378606 MsG0880042150.01.T01:CDS
ACCACTAAATATGCCAACCA+AGG 0.577357 8:+4378329 None:intergenic
GGCCAATTCGCTAAATTGCA+TGG 0.580995 8:-4379449 MsG0880042150.01.T01:CDS
TGAGGGTCTTGAGAAAGGCC+CGG 0.585958 8:-4378355 MsG0880042150.01.T01:CDS
GACGTTTACTTTGAGAACGT+TGG 0.592728 8:-4378609 MsG0880042150.01.T01:CDS
TACAAAAGGCCATACAAAGA+GGG 0.593386 8:+4378222 None:intergenic
TGAAATGTATTTGAGCTGCA+GGG 0.594487 8:+4380199 None:intergenic
GTCCTGCCTCATATCAGAGA+AGG 0.605227 8:-4378405 MsG0880042150.01.T01:CDS
GTAAGTCTTAAGCTTCCAGA+AGG 0.620151 8:-4381297 MsG0880042150.01.T01:CDS
TAAATCAGGCACTTTCCAGA+AGG 0.621084 8:-4378636 MsG0880042150.01.T01:intron
AAGTTGACCAACTGCTCCAG+AGG 0.627539 8:+4379475 None:intergenic
ATACAAAAGGCCATACAAAG+AGG 0.629268 8:+4378221 None:intergenic
AAAGAAGGTGATATTGTGTG+GGG 0.630696 8:-4380252 MsG0880042150.01.T01:CDS
GAAGTGCTGGAAGTAAGGAG+AGG 0.642449 8:-4379412 MsG0880042150.01.T01:intron
GATTGAGGAACATAGGCACG+TGG 0.681415 8:+4381183 None:intergenic
TGTCCTGTGATCCTTACATG+AGG 0.684226 8:-4381239 MsG0880042150.01.T01:CDS
AAGAAGGTGATATTGTGTGG+GGG 0.693745 8:-4380251 MsG0880042150.01.T01:CDS
ATTGAGGAACATAGGCACGT+GGG 0.716091 8:+4381184 None:intergenic
GTATGTGGAAGACATAGCTG+AGG 0.744288 8:-4378373 MsG0880042150.01.T01:CDS
TATGTGGAAGACATAGCTGA+GGG 0.752621 8:-4378372 MsG0880042150.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATATAAAAAAAAT+TGG + Chr8:4378949-4378968 None:intergenic 0.0%
!! TAATAAATATAAAAAAAATT+GGG + Chr8:4378948-4378967 None:intergenic 0.0%
!!! TTTATATTTATTATTTTATT+TGG - Chr8:4378955-4378974 MsG0880042150.01.T01:intron 0.0%
!!! TTTGATTATTGTATTTTTTT+GGG - Chr8:4378744-4378763 MsG0880042150.01.T01:intron 10.0%
!!! TTTTGATTATTGTATTTTTT+TGG - Chr8:4378743-4378762 MsG0880042150.01.T01:intron 10.0%
!! AAATGGGAAAATATAAATTT+AGG + Chr8:4379616-4379635 None:intergenic 15.0%
!! AACCAAATATTAATGAATAA+AGG + Chr8:4379679-4379698 None:intergenic 15.0%
!! AAGATATACATTTAAGTAAA+AGG + Chr8:4380648-4380667 None:intergenic 15.0%
!! AATTTAACAAATACTGAAAA+GGG + Chr8:4378397-4378416 None:intergenic 15.0%
!! ATCCTTTATTCATTAATATT+TGG - Chr8:4379674-4379693 MsG0880042150.01.T01:intron 15.0%
!! TAATTTAACAAATACTGAAA+AGG + Chr8:4378398-4378417 None:intergenic 15.0%
!!! AATAATAATTTGCTAAGAAA+TGG + Chr8:4378506-4378525 None:intergenic 15.0%
!!! AATCTTTTTTCTTTAAAACA+TGG + Chr8:4378703-4378722 None:intergenic 15.0%
!!! TCTTAGCAAATTATTATTTT+TGG - Chr8:4378508-4378527 MsG0880042150.01.T01:intron 15.0%
!!! TGTTTTAAAGAAAAAAGATT+AGG - Chr8:4378703-4378722 MsG0880042150.01.T01:intron 15.0%
!! AAAAACACAATAAGTCAAAA+AGG + Chr8:4379951-4379970 None:intergenic 20.0%
!! AATGAATAAAGGATCAATTT+CGG + Chr8:4379668-4379687 None:intergenic 20.0%
!! ACATAAAAAACTATACTTCA+AGG + Chr8:4378423-4378442 None:intergenic 20.0%
!! AGAAAATTATGTTTCTTTAG+TGG - Chr8:4378991-4379010 MsG0880042150.01.T01:intron 20.0%
!! ATATTTAGTGGTAAAAATGT+TGG - Chr8:4381217-4381236 MsG0880042150.01.T01:CDS 20.0%
!! ATCAGTTACAAATAACTATA+AGG + Chr8:4379740-4379759 None:intergenic 20.0%
!! GAAAATTATGTTTCTTTAGT+GGG - Chr8:4378992-4379011 MsG0880042150.01.T01:intron 20.0%
!! TATACATTTAAGTAAAAGGA+AGG + Chr8:4380644-4380663 None:intergenic 20.0%
!! TGAAGAAAGATTAATACAAA+AGG + Chr8:4381330-4381349 None:intergenic 20.0%
!! TTTATGTCTATTCATTTCAT+GGG - Chr8:4378436-4378455 MsG0880042150.01.T01:CDS 20.0%
!!! AAAAAAAAAAAGTGTCGTTT+CGG + Chr8:4380275-4380294 None:intergenic 20.0%
!!! TAAAGATAGAAACATTTTCT+TGG - Chr8:4378806-4378825 MsG0880042150.01.T01:intron 20.0%
!!! TAGGTTTTCAATTTTGATTT+TGG - Chr8:4378474-4378493 MsG0880042150.01.T01:intron 20.0%
!!! TATTTTTGTTGAGAATTTGA+AGG - Chr8:4379019-4379038 MsG0880042150.01.T01:intron 20.0%
!!! TTTTATGTCTATTCATTTCA+TGG - Chr8:4378435-4378454 MsG0880042150.01.T01:CDS 20.0%
! ACAAAAATTAGTCACCAAAA+TGG + Chr8:4378672-4378691 None:intergenic 25.0%
! ACAAGTTAAGGAACTAAAAA+AGG + Chr8:4378900-4378919 None:intergenic 25.0%
! ATTGAACAAGAGAAGAAAAT+GGG + Chr8:4379632-4379651 None:intergenic 25.0%
! CTCTTGAATATGAAATTACA+TGG - Chr8:4380971-4380990 MsG0880042150.01.T01:intron 25.0%
! GATATCAATTTGTGTAAATC+AGG - Chr8:4380885-4380904 MsG0880042150.01.T01:intron 25.0%
! GATCTGTTGAAGAATAAATT+TGG - Chr8:4380681-4380700 MsG0880042150.01.T01:intron 25.0%
!! TTGGAAAATTGAAACCATTT+TGG - Chr8:4378655-4378674 MsG0880042150.01.T01:intron 25.0%
ACAAAAACATTCTCCTTTCT+TGG + Chr8:4380032-4380051 None:intergenic 30.0%
ACGACACAAAAATGAATTTC+TGG + Chr8:4380596-4380615 None:intergenic 30.0%
ATAAAGAAGGTGATATTGTG+TGG - Chr8:4379281-4379300 MsG0880042150.01.T01:intron 30.0%
ATATTGAGGTCTGATTCTTT+AGG + Chr8:4378205-4378224 None:intergenic 30.0%
CAAAAACATTCTCCTTTCTT+GGG + Chr8:4380031-4380050 None:intergenic 30.0%
CACAATAATACACTTGATGT+CGG - Chr8:4379450-4379469 MsG0880042150.01.T01:CDS 30.0%
CATTGAACAAGAGAAGAAAA+TGG + Chr8:4379633-4379652 None:intergenic 30.0%
CTGTTTAGTATTGTAACAGA+CGG - Chr8:4379528-4379547 MsG0880042150.01.T01:intron 30.0%
GGAATAAGAATTGTTCTAGT+CGG - Chr8:4378614-4378633 MsG0880042150.01.T01:CDS 30.0%
GGACACAAAGATTATAAAGA+AGG - Chr8:4379268-4379287 MsG0880042150.01.T01:intron 30.0%
TAAAGAAGGTGATATTGTGT+GGG - Chr8:4379282-4379301 MsG0880042150.01.T01:intron 30.0%
TATAATCTTACTCAACCTGA+AGG - Chr8:4381024-4381043 MsG0880042150.01.T01:intron 30.0%
TATGTCTATTCCTTCAATGA+TGG + Chr8:4379559-4379578 None:intergenic 30.0%
TCATCTATATGCCAAATTCT+TGG - Chr8:4381102-4381121 MsG0880042150.01.T01:intron 30.0%
TGGCACATATCATATATAAG+CGG - Chr8:4381058-4381077 MsG0880042150.01.T01:intron 30.0%
TGTTTAGTATTGTAACAGAC+GGG - Chr8:4379529-4379548 MsG0880042150.01.T01:intron 30.0%
TTCCTCAATCTGTAAGTTTA+TGG - Chr8:4378365-4378384 MsG0880042150.01.T01:CDS 30.0%
TTGCTCTTCTTTGTAGTTAA+TGG + Chr8:4380718-4380737 None:intergenic 30.0%
TTTAACCAAAACAACATCGT+TGG + Chr8:4378266-4378285 None:intergenic 30.0%
TTTCTTCTCTTGTTCAATGA+AGG - Chr8:4379634-4379653 MsG0880042150.01.T01:intron 30.0%
! ACACAAAAATGAATTTCTGG+AGG + Chr8:4380593-4380612 None:intergenic 30.0%
! CTTGTTCAATGAAGGTTTTA+TGG - Chr8:4379642-4379661 MsG0880042150.01.T01:intron 30.0%
! GGAACTTGTGTATTCATTTT+TGG - Chr8:4378827-4378846 MsG0880042150.01.T01:intron 30.0%
! TTGTTTTCTCAACTGATTAC+CGG - Chr8:4380345-4380364 MsG0880042150.01.T01:intron 30.0%
!! TGGGTCAATTTGTTATTAGT+AGG - Chr8:4378455-4378474 MsG0880042150.01.T01:intron 30.0%
!! TTCTTTAAAACATGGAGAGT+TGG + Chr8:4378695-4378714 None:intergenic 30.0%
!!! AATTTGTTGTTTTAACCCTC+TGG - Chr8:4378536-4378555 MsG0880042150.01.T01:intron 30.0%
!!! ACGGTAACTATACGTTTTTT+TGG + Chr8:4380834-4380853 None:intergenic 30.0%
!!! ACTTTTTAACTTGTGCCTTA+AGG + Chr8:4378786-4378805 None:intergenic 30.0%
!!! AGTTGCACTTCTCTTATTTT+TGG - Chr8:4380522-4380541 MsG0880042150.01.T01:intron 30.0%
!!! CTTCTCTTATTTTTGGGATA+TGG - Chr8:4380529-4380548 MsG0880042150.01.T01:intron 30.0%
!!! CTTTTTAACTTGTGCCTTAA+GGG + Chr8:4378785-4378804 None:intergenic 30.0%
!!! GTTGCACTTCTCTTATTTTT+GGG - Chr8:4380523-4380542 MsG0880042150.01.T01:intron 30.0%
!!! TCAGTTTCATTTTTAAGTCG+CGG - Chr8:4379120-4379139 MsG0880042150.01.T01:intron 30.0%
!!! TGATTCTGTTTTTTCGAAGT+AGG - Chr8:4380001-4380020 MsG0880042150.01.T01:intron 30.0%
AAAGAAGGTGATATTGTGTG+GGG - Chr8:4379283-4379302 MsG0880042150.01.T01:intron 35.0%
AACCATGCAATTTAGCGAAT+TGG + Chr8:4380091-4380110 None:intergenic 35.0%
AACGTGAGAACACTACTAAT+AGG - Chr8:4380860-4380879 MsG0880042150.01.T01:intron 35.0%
AATAACAAGCCCTCTTTGTA+TGG - Chr8:4381304-4381323 MsG0880042150.01.T01:CDS 35.0%
AATGTATATCTTCTGCAACC+AGG - Chr8:4380656-4380675 MsG0880042150.01.T01:intron 35.0%
ACTTACAGATTGAGGAACAT+AGG + Chr8:4378362-4378381 None:intergenic 35.0%
AGCCATAAACTTACAGATTG+AGG + Chr8:4378370-4378389 None:intergenic 35.0%
ATACAAAAGGCCATACAAAG+AGG + Chr8:4381317-4381336 None:intergenic 35.0%
ATAGCATGCATGTAAGCTTA+TGG - Chr8:4379890-4379909 MsG0880042150.01.T01:intron 35.0%
ATGCCAGTATAGTATGAAAG+AGG + Chr8:4379382-4379401 None:intergenic 35.0%
CGGTACTGTCAATAATATTG+AGG + Chr8:4378219-4378238 None:intergenic 35.0%
GATTACGAACTTGGATTCTT+TGG - Chr8:4378636-4378655 MsG0880042150.01.T01:intron 35.0%
GTTCCTCTTTCATACTATAC+TGG - Chr8:4379376-4379395 MsG0880042150.01.T01:intron 35.0%
TAATTGAAGAGAGTTGTAGC+AGG - Chr8:4380478-4380497 MsG0880042150.01.T01:intron 35.0%
TACAAAAGGCCATACAAAGA+GGG + Chr8:4381316-4381335 None:intergenic 35.0%
TATTACAGTACTGTGTACAC+AGG + Chr8:4380387-4380406 None:intergenic 35.0%
TCATACTATACTGGCATTCT+TGG - Chr8:4379385-4379404 MsG0880042150.01.T01:intron 35.0%
TGAAATGTATTTGAGCTGCA+GGG + Chr8:4379339-4379358 None:intergenic 35.0%
TGATATGAACGCGTCAAATT+AGG - Chr8:4379475-4379494 MsG0880042150.01.T01:CDS 35.0%
TGCTACAACTCTCTTCAATT+AGG + Chr8:4380479-4380498 None:intergenic 35.0%
TTCCGACTTTATTAATCTCC+CGG + Chr8:4378598-4378617 None:intergenic 35.0%
TTGAAATGTATTTGAGCTGC+AGG + Chr8:4379340-4379359 None:intergenic 35.0%
TTGTATTGTGCAGTTACTGA+TGG - Chr8:4379191-4379210 MsG0880042150.01.T01:intron 35.0%
TTGTTTGAAAACAGTATGCC+AGG - Chr8:4379969-4379988 MsG0880042150.01.T01:intron 35.0%
! ACCTGAAGGTGTAACAAATT+TGG - Chr8:4381038-4381057 MsG0880042150.01.T01:intron 35.0%
! AGGACTTCGATTAAAAGTGT+GGG + Chr8:4380237-4380256 None:intergenic 35.0%
! TTATGGTGTGTCTAAAGTTC+TGG - Chr8:4379240-4379259 MsG0880042150.01.T01:intron 35.0%
! TTCTGGAAGCTTAAGACTTA+CGG + Chr8:4378239-4378258 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - Chr8:4378768-4378787 MsG0880042150.01.T01:intron 35.0%
!! GGTTTACTAGCTTTGTTTGA+AGG - Chr8:4379695-4379714 MsG0880042150.01.T01:intron 35.0%
!! TGTAATCACTTGTGTCGTTT+CGG + Chr8:4380315-4380334 None:intergenic 35.0%
AAATTACATGGTCGCATACC+TGG - Chr8:4380983-4381002 MsG0880042150.01.T01:intron 40.0%
AAGAAGGTGATATTGTGTGG+GGG - Chr8:4379284-4379303 MsG0880042150.01.T01:intron 40.0%
AAGTAAACGTCAATGCCTTC+TGG + Chr8:4380917-4380936 None:intergenic 40.0%
ACCACTAAATATGCCAACCA+AGG + Chr8:4381209-4381228 None:intergenic 40.0%
ACCTTACCTTCTCTGATATG+AGG + Chr8:4381139-4381158 None:intergenic 40.0%
AGAAGGTAAGGTTGTGTATG+TGG - Chr8:4381147-4381166 MsG0880042150.01.T01:intron 40.0%
AGAATTGCGAATTACCAGGA+AGG + Chr8:4378571-4378590 None:intergenic 40.0%
AGCCGGGAGATTAATAAAGT+CGG - Chr8:4378593-4378612 MsG0880042150.01.T01:CDS 40.0%
ATGTAATTGCAGCCGATAAC+TGG - Chr8:4379217-4379236 MsG0880042150.01.T01:intron 40.0%
CAGGACAAACTCCAAGAATT+TGG + Chr8:4381116-4381135 None:intergenic 40.0%
CAGGACTTCGATTAAAAGTG+TGG + Chr8:4380238-4380257 None:intergenic 40.0%
CTCATAAGAGTCCTCATGTA+AGG + Chr8:4378310-4378329 None:intergenic 40.0%
GACACACCATAACCAGTTAT+CGG + Chr8:4379232-4379251 None:intergenic 40.0%
GGTCAGTTTAACAGATTTGC+AGG - Chr8:4380759-4380778 MsG0880042150.01.T01:intron 40.0%
GTAAGTCTTAAGCTTCCAGA+AGG - Chr8:4378238-4378257 MsG0880042150.01.T01:three_prime_UTR 40.0%
GTGAGAACACTACTAATAGG+TGG - Chr8:4380863-4380882 MsG0880042150.01.T01:intron 40.0%
GTGTTCTCACGTTACAAACA+CGG + Chr8:4380853-4380872 None:intergenic 40.0%
TAAATCAGGCACTTTCCAGA+AGG - Chr8:4380899-4380918 MsG0880042150.01.T01:intron 40.0%
TATGTGGAAGACATAGCTGA+GGG - Chr8:4381163-4381182 MsG0880042150.01.T01:intron 40.0%
TATTCTTCAACAGATCCACC+TGG + Chr8:4380677-4380696 None:intergenic 40.0%
TGAAGGAACTGCTGGATATA+GGG - Chr8:4379036-4379055 MsG0880042150.01.T01:intron 40.0%
TGAGAATTTGAAGGAACTGC+TGG - Chr8:4379028-4379047 MsG0880042150.01.T01:intron 40.0%
TGTGTGGGGGATAACTAATT+GGG - Chr8:4379297-4379316 MsG0880042150.01.T01:intron 40.0%
TTCTAGTCGGATTACGAACT+TGG - Chr8:4378627-4378646 MsG0880042150.01.T01:CDS 40.0%
TTGAAGGAACTGCTGGATAT+AGG - Chr8:4379035-4379054 MsG0880042150.01.T01:intron 40.0%
TTGTGTGGGGGATAACTAAT+TGG - Chr8:4379296-4379315 MsG0880042150.01.T01:intron 40.0%
! GACGTTTACTTTGAGAACGT+TGG - Chr8:4380926-4380945 MsG0880042150.01.T01:intron 40.0%
! GTCAAAAAGGCACAACAGAA+TGG + Chr8:4379938-4379957 None:intergenic 40.0%
! GTTTACTTTGAGAACGTTGG+AGG - Chr8:4380929-4380948 MsG0880042150.01.T01:intron 40.0%
!! AGGTTCCAACGATGTTGTTT+TGG - Chr8:4378258-4378277 MsG0880042150.01.T01:three_prime_UTR 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + Chr8:4378924-4378943 None:intergenic 40.0%
!! CTTCTGAAACATTACGTGTC+TGG - Chr8:4378175-4378194 MsG0880042150.01.T01:three_prime_UTR 40.0%
!! GCCAAATTTGTTACACCTTC+AGG + Chr8:4381042-4381061 None:intergenic 40.0%
!! GTAATCACTTGTGTCGTTTC+GGG + Chr8:4380314-4380333 None:intergenic 40.0%
!! GTGTCTAAAGTTCTGGAATC+TGG - Chr8:4379247-4379266 MsG0880042150.01.T01:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + Chr8:4378925-4378944 None:intergenic 40.0%
!! TTCCTTAACTTGTGCCCTTA+GGG - Chr8:4378907-4378926 MsG0880042150.01.T01:intron 40.0%
!!! GTGGGTTGATAGAAGCTTTT+GGG + Chr8:4378336-4378355 None:intergenic 40.0%
AATATGCCAACCAAGGCTTC+CGG + Chr8:4381202-4381221 None:intergenic 45.0%
ACAACATCGTTGGAACCTTC+TGG + Chr8:4378256-4378275 None:intergenic 45.0%
ACAGAATCAGCAGTCATTCC+TGG + Chr8:4379990-4380009 None:intergenic 45.0%
AGTCCTCATGTAAGGATCAC+AGG + Chr8:4378302-4378321 None:intergenic 45.0%
ATAGCTGAGGGTCTTGAGAA+AGG - Chr8:4381175-4381194 MsG0880042150.01.T01:intron 45.0%
ATTGAGGAACATAGGCACGT+GGG + Chr8:4378354-4378373 None:intergenic 45.0%
CTACAAAGAAGAGCAAGACC+TGG - Chr8:4380722-4380741 MsG0880042150.01.T01:intron 45.0%
CTGCAGAATTGCGAATTACC+AGG + Chr8:4378575-4378594 None:intergenic 45.0%
GACATATTGTGTGAGAGAGC+TGG - Chr8:4379573-4379592 MsG0880042150.01.T01:intron 45.0%
GCCTCATATCAGAGAAGGTA+AGG - Chr8:4381135-4381154 MsG0880042150.01.T01:intron 45.0%
GCCTTGGTTGGCATATTTAG+TGG - Chr8:4381205-4381224 MsG0880042150.01.T01:CDS 45.0%
GGCCAATTCGCTAAATTGCA+TGG - Chr8:4380086-4380105 MsG0880042150.01.T01:intron 45.0%
GTAATTCGCAATTCTGCAGC+CGG - Chr8:4378576-4378595 MsG0880042150.01.T01:CDS 45.0%
GTATATCTTCTGCAACCAGG+TGG - Chr8:4380659-4380678 MsG0880042150.01.T01:intron 45.0%
GTATGTGGAAGACATAGCTG+AGG - Chr8:4381162-4381181 MsG0880042150.01.T01:intron 45.0%
TAATTCGCAATTCTGCAGCC+GGG - Chr8:4378577-4378596 MsG0880042150.01.T01:CDS 45.0%
TACCTTCTCTGATATGAGGC+AGG + Chr8:4381135-4381154 None:intergenic 45.0%
TGTCCTGTGATCCTTACATG+AGG - Chr8:4378296-4378315 MsG0880042150.01.T01:CDS 45.0%
TTGCAGCCGATAACTGGTTA+TGG - Chr8:4379223-4379242 MsG0880042150.01.T01:intron 45.0%
TTGCATGGTTGCTATGTCGT+TGG - Chr8:4380101-4380120 MsG0880042150.01.T01:intron 45.0%
!! GTTCCTTAACTTGTGCCCTT+AGG - Chr8:4378906-4378925 MsG0880042150.01.T01:intron 45.0%
!! GTTTTTGTTTCAGCTGCCTC+TGG - Chr8:4380044-4380063 MsG0880042150.01.T01:intron 45.0%
!! TTCGGTGTCAGATTTCAGAC+AGG + Chr8:4380257-4380276 None:intergenic 45.0%
!!! CGTGGGTTGATAGAAGCTTT+TGG + Chr8:4378337-4378356 None:intergenic 45.0%
!!! TTGTTTTAACCCTCTGGTCC+TGG - Chr8:4378542-4378561 MsG0880042150.01.T01:intron 45.0%
AAGTTGACCAACTGCTCCAG+AGG + Chr8:4380063-4380082 None:intergenic 50.0%
ATATGCCAACCAAGGCTTCC+GGG + Chr8:4381201-4381220 None:intergenic 50.0%
GAAGTAGGCTCTCCCAAGAA+AGG - Chr8:4380016-4380035 MsG0880042150.01.T01:intron 50.0%
GACCTTTCAATGCTGCATCC+AGG + Chr8:4380743-4380762 None:intergenic 50.0%
GATTGAGGAACATAGGCACG+TGG + Chr8:4378355-4378374 None:intergenic 50.0%
GGAGCAGTTGGTCAACTTGT+TGG - Chr8:4380065-4380084 MsG0880042150.01.T01:intron 50.0%
GTCCTGCCTCATATCAGAGA+AGG - Chr8:4381130-4381149 MsG0880042150.01.T01:intron 50.0%
! GACCTGGATGCAGCATTGAA+AGG - Chr8:4380738-4380757 MsG0880042150.01.T01:intron 50.0%
! TGCCCTAAGGGCACAAGTTA+AGG + Chr8:4378912-4378931 None:intergenic 50.0%
! TGCTATGTCGTTGGAAGTGC+TGG - Chr8:4380110-4380129 MsG0880042150.01.T01:intron 50.0%
! TTTTAACCCTCTGGTCCTGG+TGG - Chr8:4378545-4378564 MsG0880042150.01.T01:intron 50.0%
!! CGTTGGAAGTGCTGGAAGTA+AGG - Chr8:4380118-4380137 MsG0880042150.01.T01:intron 50.0%
!! GAAGTGCTGGAAGTAAGGAG+AGG - Chr8:4380123-4380142 MsG0880042150.01.T01:intron 50.0%
!! GACGGGTTAGCCATCATTGA+AGG - Chr8:4379546-4379565 MsG0880042150.01.T01:intron 50.0%
ACATGGTCGCATACCTGGTG+TGG - Chr8:4380988-4381007 MsG0880042150.01.T01:intron 55.0%
AGGACACTGACACGTCACAC+CGG + Chr8:4380367-4380386 None:intergenic 55.0%
CTGCGAGATCATTCCACACC+AGG + Chr8:4381004-4381023 None:intergenic 55.0%
GAATTACCAGGAAGGCCACC+AGG + Chr8:4378563-4378582 None:intergenic 55.0%
GTGTGAGAGAGCTGGTTGTC+TGG - Chr8:4379581-4379600 MsG0880042150.01.T01:intron 55.0%
TGAGGGTCTTGAGAAAGGCC+CGG - Chr8:4381180-4381199 MsG0880042150.01.T01:intron 55.0%
AAAGGCCCGGAAGCCTTGGT+TGG - Chr8:4381193-4381212 MsG0880042150.01.T01:CDS 60.0%
TGAGAAAGGCCCGGAAGCCT+TGG - Chr8:4381189-4381208 MsG0880042150.01.T01:CDS 60.0%
!! TCAGCTGCCTCTGGAGCAGT+TGG - Chr8:4380053-4380072 MsG0880042150.01.T01:intron 60.0%
AGGAAGGCCACCAGGACCAG+AGG + Chr8:4378555-4378574 None:intergenic 65.0%
GGAAGGCCACCAGGACCAGA+GGG + Chr8:4378554-4378573 None:intergenic 65.0%
TCTGGTCCTGGTGGCCTTCC+TGG - Chr8:4378554-4378573 MsG0880042150.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 4378148 4381409 4378148 ID=MsG0880042150.01;Name=MsG0880042150.01
Chr8 mRNA 4378148 4381409 4378148 ID=MsG0880042150.01.T01;Parent=MsG0880042150.01;Name=MsG0880042150.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.25|0.6|1|1|1|5|139|256
Chr8 exon 4378148 4378465 4378148 ID=MsG0880042150.01.T01:exon:2560;Parent=MsG0880042150.01.T01
Chr8 exon 4378553 4378650 4378553 ID=MsG0880042150.01.T01:exon:2559;Parent=MsG0880042150.01.T01
Chr8 exon 4379413 4379500 4379413 ID=MsG0880042150.01.T01:exon:2558;Parent=MsG0880042150.01.T01
Chr8 exon 4380151 4380328 4380151 ID=MsG0880042150.01.T01:exon:2557;Parent=MsG0880042150.01.T01
Chr8 exon 4381182 4381409 4381182 ID=MsG0880042150.01.T01:exon:2556;Parent=MsG0880042150.01.T01
Chr8 CDS 4381182 4381409 4381182 ID=MsG0880042150.01.T01:cds;Parent=MsG0880042150.01.T01
Chr8 CDS 4380151 4380328 4380151 ID=MsG0880042150.01.T01:cds;Parent=MsG0880042150.01.T01
Chr8 CDS 4379413 4379500 4379413 ID=MsG0880042150.01.T01:cds;Parent=MsG0880042150.01.T01
Chr8 CDS 4378553 4378650 4378553 ID=MsG0880042150.01.T01:cds;Parent=MsG0880042150.01.T01
Chr8 CDS 4378287 4378465 4378287 ID=MsG0880042150.01.T01:cds;Parent=MsG0880042150.01.T01
Chr8 three_prime_UTR 4378148 4378286 4378148 ID=MsG0880042150.01.T01:three_prime_utr;Parent=MsG0880042150.01.T01
Gene Sequence

>MsG0880042150.01.T01

ATGGCTCAAGTTAAGAACAAACAAGTGCTTCTGAAACATTACGTGTCTGGTTTTCCTAAAGAATCAGACCTCAATATTATTGACAGTACCGTAAGTCTTAAGCTTCCAGAAGGTTCCAACGATGTTGTTTTGGTTAAAAATCTTTACTTGTCCTGTGATCCTTACATGAGGACTCTTATGAGTGACCCAAAAGCTTCTATCAACCCACGTGCCTATGTTCCTCAATCTCCGATAACTGGTTATGGTGTGTCTAAAGTTCTGGAATCTGGACACAAAGATTATAAAGAAGGTGATATTGTGTGGGGGATAACTAATTGGGAAGAGTACAGCTTGATCCCTGCAGCTCAAATACATTTCAAAATTGAGCACACTGATGTTCCTCTTTCATACTATACTGGCATTCTTGCTGCCTCTGGAGCAGTTGGTCAACTTGTTGGCCAATTCGCTAAATTGCATGGTTGCTATGTCGTTGGAAGTGCTGGAAGTAAGGAGAGGCACTTTCCAGAAGGCATTGACGTTTACTTTGAGAACGTTGGAGGCAAGACACTTGATGCTGTACTCTTGAATATGAAATTACATGGTCGCATACCTGTTGATTACTATCATCTATATGCCAAATTCTTGGAGTTTGTCCTGCCTCATATCAGAGAAGGTAAGGTTGTGTATGTGGAAGACATAGCTGAGGGTCTTGAGAAAGGCCCGGAAGCCTTGGTTGGCATATTTAGTGGTAAAAATGTTGGCAAACAAGTGCTTGTTGTTGCTCATGAATGA
Protein sequence

>MsG0880042150.01.T01

MAQVKNKQVLLKHYVSGFPKESDLNIIDSTVSLKLPEGSNDVVLVKNLYLSCDPYMRTLMSDPKASINPRAYVPQSPITGYGVSKVLESGHKDYKEGDIVWGITNWEEYSLIPAAQIHFKIEHTDVPLSYYTGILAASGAVGQLVGQFAKLHGCYVVGSAGSKERHFPEGIDVYFENVGGKTLDAVLLNMKLHGRIPVDYYHLYAKFLEFVLPHIREGKVVYVEDIAEGLEKGPEALVGIFSGKNVGKQVLVVAHE*