AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042223.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042223.01.T01 MTR_8g010020 80.488 246 2 1 17 216 44 289 2.92e-135 382
MsG0880042223.01.T01 MTR_8g010030 72.835 254 23 1 9 216 68 321 1.91e-126 361
MsG0880042223.01.T01 MTR_8g009820 74.286 245 17 1 18 216 135 379 5.77e-123 354
MsG0880042223.01.T01 MTR_8g009980 68.852 244 30 1 19 216 78 321 1.05e-114 331
MsG0880042223.01.T01 MTR_8g009830 68.163 245 31 2 18 216 76 319 1.45e-111 323
MsG0880042223.01.T01 MTR_8g009840 68.571 245 30 2 18 216 76 319 2.45e-110 327
MsG0880042223.01.T01 MTR_8g010000 66.939 245 10 2 18 216 77 296 8.37e-105 305
MsG0880042223.01.T01 MTR_4g082970 63.265 245 44 1 18 216 83 327 1.65e-100 295
MsG0880042223.01.T01 MTR_8g007325 88.811 143 16 0 18 160 76 218 1.32e-89 263
MsG0880042223.01.T01 MTR_7g406860 69.399 183 55 1 19 200 79 261 1.19e-85 258
MsG0880042223.01.T01 MTR_0011s0280 54.545 176 80 0 24 199 85 260 1.84e-67 211
MsG0880042223.01.T01 MTR_2g088220 50.254 197 96 2 9 203 71 267 2.30e-59 191
MsG0880042223.01.T01 MTR_2g088190 50.265 189 88 3 19 203 80 266 4.88e-57 184
MsG0880042223.01.T01 MTR_2g088200 48.913 184 92 2 22 203 84 267 1.14e-54 178
MsG0880042223.01.T01 MTR_4g086400 43.333 120 66 2 80 199 276 393 3.18e-21 91.7
MsG0880042223.01.T01 MTR_4g086410 42.500 120 67 2 80 199 416 533 3.49e-21 91.7
MsG0880042223.01.T01 MTR_4g086400 43.333 120 66 2 80 199 416 533 4.03e-21 91.7
MsG0880042223.01.T01 MTR_5g095030 37.383 107 21 1 156 216 9 115 1.74e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042223.01.T01 AT5G16990 64.228 246 41 2 18 216 75 320 1.23e-105 308
MsG0880042223.01.T01 AT1G26320 62.353 255 49 2 14 221 79 333 2.04e-104 305
MsG0880042223.01.T01 AT5G17000 63.008 246 44 2 18 216 77 322 7.34e-104 304
MsG0880042223.01.T01 AT5G16970 62.195 246 46 2 18 216 77 322 9.85e-104 303
MsG0880042223.01.T01 AT3G03080 62.000 250 49 1 18 221 83 332 4.88e-103 302
MsG0880042223.01.T01 AT5G16960 60.569 246 50 2 18 216 78 323 6.00e-100 294
MsG0880042223.01.T01 AT5G16960 60.569 246 50 2 18 216 78 323 6.00e-100 294
MsG0880042223.01.T01 AT1G26320 60.784 255 48 3 14 221 79 328 6.00e-100 294
MsG0880042223.01.T01 AT5G37940 60.569 246 50 2 18 216 85 330 1.16e-99 293
MsG0880042223.01.T01 AT5G37980 60.569 246 50 2 18 216 85 330 5.95e-99 291
MsG0880042223.01.T01 AT5G38000 59.350 246 53 2 18 216 85 330 2.30e-97 288
MsG0880042223.01.T01 AT5G38000 59.350 246 53 2 18 216 85 330 2.53e-97 288
MsG0880042223.01.T01 AT3G59845 59.350 246 52 3 18 216 81 325 3.61e-91 271
MsG0880042223.01.T01 AT3G59845 60.714 224 40 3 40 216 1 223 1.04e-83 249
MsG0880042223.01.T01 AT5G16980 63.235 204 29 1 59 216 13 216 2.65e-83 248
MsG0880042223.01.T01 AT5G16980 63.235 204 29 1 59 216 13 216 2.65e-83 248
MsG0880042223.01.T01 AT5G38000 54.472 246 46 3 18 216 85 311 3.02e-83 251
MsG0880042223.01.T01 AT5G16980 63.235 204 29 1 59 216 79 282 4.85e-83 249
MsG0880042223.01.T01 AT1G65560 52.846 246 66 2 19 214 4 249 4.33e-82 246
MsG0880042223.01.T01 AT1G65560 52.846 246 66 2 19 214 80 325 8.20e-81 245
MsG0880042223.01.T01 AT5G17000 76.389 144 33 1 18 160 77 220 1.49e-77 234
MsG0880042223.01.T01 AT1G49670 42.500 120 67 2 80 199 412 529 1.14e-22 96.3
MsG0880042223.01.T01 AT1G49670 42.982 114 63 2 86 199 441 552 9.69e-22 93.6

Find 52 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTCTTCTTTGTAGTTAA+TGG 0.122574 8:+5571783 None:intergenic
GATCTGTTGAAGAATAAATT+TGG 0.232879 8:-5571817 MsG0880042223.01.T01:CDS
AAGTAAACGTCAATGCCTTC+TGG 0.294778 8:+5571580 None:intergenic
TCATACTATACTGGCATTCT+TGG 0.299905 8:-5573126 MsG0880042223.01.T01:intron
CCAGGAATGACTGCTGATTC+TGG 0.299952 8:-5572519 MsG0880042223.01.T01:CDS
GTTCCTCTTTCATACTATAC+TGG 0.341418 8:-5573135 MsG0880042223.01.T01:CDS
TTATGGTGTGTCTAAAGTTC+TGG 0.342860 8:-5573271 MsG0880042223.01.T01:CDS
AACCATGCAATTTAGCGAAT+TGG 0.343765 8:+5572415 None:intergenic
ATGTAATTGCAGCCGATAAC+TGG 0.344517 8:-5573294 MsG0880042223.01.T01:intron
GACACACCATAACCAGTTAT+CGG 0.365873 8:+5573282 None:intergenic
CCAGAATCAGCAGTCATTCC+TGG 0.377876 8:+5572519 None:intergenic
GGAGCAGTTGGTCAACTTGT+TGG 0.381382 8:-5572438 MsG0880042223.01.T01:CDS
AAAACATTCTCTCCTTTCTT+GGG 0.385342 8:+5572477 None:intergenic
GTGTCTAAAGTTCTGGAATC+TGG 0.394753 8:-5573264 MsG0880042223.01.T01:CDS
TGCTATGTCGTTGGAAGTGC+TGG 0.402479 8:-5572393 MsG0880042223.01.T01:CDS
AGAAGGTAAGGTTGTGTATG+TGG 0.422924 8:-5571346 MsG0880042223.01.T01:CDS
GCCTTGGTTGGCATATTTAG+TGG 0.427792 8:-5571289 None:intergenic
TTGAAATGTATTTGAGCTGC+AGG 0.432855 8:+5573174 None:intergenic
AATATGCCAACCAAGGCTTC+CGG 0.435745 8:+5571295 None:intergenic
CGTTGGAAGTGCTGGAAGTA+AGG 0.454625 8:-5572385 MsG0880042223.01.T01:CDS
GATTCTGGTTTCTTCGAAGT+AGG 0.456441 8:-5572504 MsG0880042223.01.T01:CDS
TTGCAGCCGATAACTGGTTA+TGG 0.462292 8:-5573288 MsG0880042223.01.T01:intron
TTGAGAAAGGCCGGAAGCCT+TGG 0.479023 8:-5571305 MsG0880042223.01.T01:CDS
TCAGCTGCCTCTGGAGCAGT+TGG 0.487420 8:-5572450 MsG0880042223.01.T01:CDS
ACCTGGATGCAGCATTGAAA+AGG 0.497218 8:-5571759 MsG0880042223.01.T01:intron
TGTTTGAAAACAGGTATGCC+AGG 0.504225 8:-5572537 MsG0880042223.01.T01:intron
GGACACAAAGATTATAAAGA+AGG 0.506959 8:-5573243 MsG0880042223.01.T01:CDS
CTCTTGAATATGAAATTACA+TGG 0.509872 8:-5571523 MsG0880042223.01.T01:CDS
GCCTCATATCAGAGAAGGTA+AGG 0.512782 8:-5571358 MsG0880042223.01.T01:intron
CTGAGGGTCTTGAGAAAGGC+CGG 0.527419 8:-5571314 MsG0880042223.01.T01:CDS
ATAGCTGAGGGTCTTGAGAA+AGG 0.540813 8:-5571318 MsG0880042223.01.T01:CDS
GAAGTAGGCTCTCCCAAGAA+AGG 0.547354 8:-5572489 MsG0880042223.01.T01:CDS
ATAAAGAAGGTGATATTGTG+TGG 0.550971 8:-5573230 MsG0880042223.01.T01:CDS
ATGCCAGTATAGTATGAAAG+AGG 0.552569 8:+5573132 None:intergenic
TAAAGAAGGTGATATTGTGT+GGG 0.557070 8:-5573229 MsG0880042223.01.T01:CDS
TTGCATGGTTGCTATGTCGT+TGG 0.566124 8:-5572402 MsG0880042223.01.T01:CDS
GTTTACTTTGAGAACGTTGG+AGG 0.568105 8:-5571565 MsG0880042223.01.T01:CDS
AAGTGCTGGAAGTAAGGAGA+AGG 0.573952 8:-5572379 MsG0880042223.01.T01:intron
GAAAGGCCGGAAGCCTTGGT+TGG 0.575679 8:-5571301 MsG0880042223.01.T01:CDS
ACCACTAAATATGCCAACCA+AGG 0.577357 8:+5571288 None:intergenic
GGCCAATTCGCTAAATTGCA+TGG 0.580995 8:-5572417 MsG0880042223.01.T01:CDS
GACGTTTACTTTGAGAACGT+TGG 0.592728 8:-5571568 MsG0880042223.01.T01:CDS
TGAAATGTATTTGAGCTGCA+GGG 0.594487 8:+5573175 None:intergenic
CTACAAAGAAGAGCAAGACC+TGG 0.596967 8:-5571776 MsG0880042223.01.T01:CDS
TAAATCAGGCACTTTCCAGA+AGG 0.621084 8:-5571595 MsG0880042223.01.T01:intron
AAGTTGACCAACTGCTCCAG+AGG 0.627539 8:+5572443 None:intergenic
AAAGAAGGTGATATTGTGTG+GGG 0.630696 8:-5573228 MsG0880042223.01.T01:CDS
TGCGAGATCATTCCACACAC+AGG 0.671185 8:+5571493 None:intergenic
CATGGTCGCATACCTGTGTG+TGG 0.685096 8:-5571505 MsG0880042223.01.T01:CDS
AAGAAGGTGATATTGTGTGG+GGG 0.693745 8:-5573227 MsG0880042223.01.T01:CDS
GTATGTGGAAGACATAGCTG+AGG 0.744288 8:-5571331 MsG0880042223.01.T01:CDS
TATGTGGAAGACATAGCTGA+GGG 0.752621 8:-5571330 MsG0880042223.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACCATATTAATGAATAA+AGG + Chr8:5571865-5571884 None:intergenic 15.0%
!! AAGATATACATTTAAGTAAA+AGG + Chr8:5572844-5572863 None:intergenic 15.0%
!! TAACATAAAAATTGAATGTT+GGG + Chr8:5571609-5571628 None:intergenic 15.0%
!! TTAACATAAAAATTGAATGT+TGG + Chr8:5571610-5571629 None:intergenic 15.0%
!! AAAAACACAATAAGTCAAAA+AGG + Chr8:5572138-5572157 None:intergenic 20.0%
!! AATGAATAAAGGATCAATTT+CGG + Chr8:5571854-5571873 None:intergenic 20.0%
!! GAAAGGGAAAATATAAATTT+AGG + Chr8:5571804-5571823 None:intergenic 20.0%
!! TATACATTTAAGTAAAAGGA+AGG + Chr8:5572840-5572859 None:intergenic 20.0%
!! TGATCCTTTATTCATTAATA+TGG - Chr8:5571858-5571877 MsG0880042223.01.T01:intron 20.0%
! CATCAGTTACAATAACTATA+AGG + Chr8:5571926-5571945 None:intergenic 25.0%
! CTCTTGAATATGAAATTACA+TGG - Chr8:5573171-5573190 MsG0880042223.01.T01:CDS 25.0%
! GATATCAATTTGTGTAAATC+AGG - Chr8:5573085-5573104 MsG0880042223.01.T01:intron 25.0%
! GATCTGTTGAAGAATAAATT+TGG - Chr8:5572877-5572896 MsG0880042223.01.T01:intron 25.0%
!! TTGCACTTCTCTTAATTTTT+GGG - Chr8:5572719-5572738 MsG0880042223.01.T01:intron 25.0%
!!! AAAAAAAAAACGTGTCGTTT+CGG + Chr8:5572467-5572486 None:intergenic 25.0%
!!! TAATATGGTTTTACTAGCTT+TGG - Chr8:5571873-5571892 MsG0880042223.01.T01:intron 25.0%
!!! TTCTCTTAATTTTTGGGATA+TGG - Chr8:5572725-5572744 MsG0880042223.01.T01:intron 25.0%
!!! TTGTGTTTTTGTTTGAAAAC+AGG - Chr8:5572148-5572167 MsG0880042223.01.T01:intron 25.0%
AAAAACATTCTCTCCTTTCT+TGG + Chr8:5572221-5572240 None:intergenic 30.0%
AAAACATTCTCTCCTTTCTT+GGG + Chr8:5572220-5572239 None:intergenic 30.0%
ACGACACAAAAATGAATTTC+TGG + Chr8:5572792-5572811 None:intergenic 30.0%
ATAAAGAAGGTGATATTGTG+TGG - Chr8:5571464-5571483 MsG0880042223.01.T01:intron 30.0%
CTGTTTAGTATTGTAACAGA+CGG - Chr8:5571716-5571735 MsG0880042223.01.T01:intron 30.0%
GGACACAAAGATTATAAAGA+AGG - Chr8:5571451-5571470 MsG0880042223.01.T01:intron 30.0%
TAAAGAAGGTGATATTGTGT+GGG - Chr8:5571465-5571484 MsG0880042223.01.T01:intron 30.0%
TATAATCTTACTCAACCTGA+AGG - Chr8:5573225-5573244 MsG0880042223.01.T01:CDS 30.0%
TATGTCTATTCCTTCAATGA+TGG + Chr8:5571747-5571766 None:intergenic 30.0%
TCAGTTTATAACAGATTTGC+AGG - Chr8:5572958-5572977 MsG0880042223.01.T01:intron 30.0%
TCATCTATATGCCAAATTCT+TGG - Chr8:5573303-5573322 MsG0880042223.01.T01:intron 30.0%
TCATTGAACAAGAGAAGAAA+GGG + Chr8:5571820-5571839 None:intergenic 30.0%
TGGCACATATCATATATAAG+CGG - Chr8:5573259-5573278 MsG0880042223.01.T01:CDS 30.0%
TGTTTAGTATTGTAACAGAC+GGG - Chr8:5571717-5571736 MsG0880042223.01.T01:intron 30.0%
TTCATTGAACAAGAGAAGAA+AGG + Chr8:5571821-5571840 None:intergenic 30.0%
TTGCTCTTCTTTGTAGTTAA+TGG + Chr8:5572914-5572933 None:intergenic 30.0%
TTTCTTCTCTTGTTCAATGA+AGG - Chr8:5571820-5571839 MsG0880042223.01.T01:CDS 30.0%
! ACACAAAAATGAATTTCTGG+AGG + Chr8:5572789-5572808 None:intergenic 30.0%
! CTTGTTCAATGAAGGTTTTA+TGG - Chr8:5571828-5571847 MsG0880042223.01.T01:intron 30.0%
! GTTGCACTTCTCTTAATTTT+TGG - Chr8:5572718-5572737 MsG0880042223.01.T01:intron 30.0%
! TTGTTTTCTCAACTGATTAC+CGG - Chr8:5572538-5572557 MsG0880042223.01.T01:intron 30.0%
!! TTCAGTTTCATTTTAAGTCG+CGG - Chr8:5571303-5571322 MsG0880042223.01.T01:CDS 30.0%
!!! ACGGTAACTATACGTTTTTT+TGG + Chr8:5573033-5573052 None:intergenic 30.0%
!!! TTTTACTAGCTTTGGTTTGA+AGG - Chr8:5571881-5571900 MsG0880042223.01.T01:intron 30.0%
AAAGAAGGTGATATTGTGTG+GGG - Chr8:5571466-5571485 MsG0880042223.01.T01:intron 35.0%
AACCATGCAATTTAGCGAAT+TGG + Chr8:5572282-5572301 None:intergenic 35.0%
AATGTATATCTTCTGCAACC+AGG - Chr8:5572852-5572871 MsG0880042223.01.T01:intron 35.0%
ACGTGAGAAACACTACTAAT+AGG - Chr8:5573060-5573079 MsG0880042223.01.T01:intron 35.0%
ATAGCATGCATGTAAGCTTA+TGG - Chr8:5572077-5572096 MsG0880042223.01.T01:intron 35.0%
ATGCCAGTATAGTATGAAAG+AGG + Chr8:5571565-5571584 None:intergenic 35.0%
ATTACAGTACTTGTGTACAC+AGG + Chr8:5572581-5572600 None:intergenic 35.0%
GTTCCTCTTTCATACTATAC+TGG - Chr8:5571559-5571578 MsG0880042223.01.T01:CDS 35.0%
TAATTGAAGAGAGTTGTAGC+AGG - Chr8:5572673-5572692 MsG0880042223.01.T01:intron 35.0%
TCATACTATACTGGCATTCT+TGG - Chr8:5571568-5571587 MsG0880042223.01.T01:CDS 35.0%
TGAAATGTATTTGAGCTGCA+GGG + Chr8:5571522-5571541 None:intergenic 35.0%
TGAGAAACACTACTAATAGG+TGG - Chr8:5573063-5573082 MsG0880042223.01.T01:intron 35.0%
TGATATGAACGCGTCAAATT+AGG - Chr8:5571663-5571682 MsG0880042223.01.T01:intron 35.0%
TGCTACAACTCTCTTCAATT+AGG + Chr8:5572674-5572693 None:intergenic 35.0%
TGTTTCTCACGTTACAAACA+CGG + Chr8:5573052-5573071 None:intergenic 35.0%
TTGAAATGTATTTGAGCTGC+AGG + Chr8:5571523-5571542 None:intergenic 35.0%
TTGTATTGTGCAGTTACTGA+TGG - Chr8:5571374-5571393 MsG0880042223.01.T01:intron 35.0%
! ACCTGAAGGTGTAACAAATT+TGG - Chr8:5573239-5573258 MsG0880042223.01.T01:CDS 35.0%
! AGGACTTCGATTAAAAGTGT+GGG + Chr8:5572429-5572448 None:intergenic 35.0%
! ATGTTTTCATGTGATGAACG+AGG - Chr8:5571686-5571705 MsG0880042223.01.T01:intron 35.0%
! TTATGGTGTGTCTAAAGTTC+TGG - Chr8:5571423-5571442 MsG0880042223.01.T01:intron 35.0%
!! TGTAATCACTTGTGTCGTTT+CGG + Chr8:5572508-5572527 None:intergenic 35.0%
AAGAAGGTGATATTGTGTGG+GGG - Chr8:5571467-5571486 MsG0880042223.01.T01:intron 40.0%
AAGTAAACGTCAATGCCTTC+TGG + Chr8:5573117-5573136 None:intergenic 40.0%
ACCTTACCTTCTCTGATATG+AGG + Chr8:5573340-5573359 None:intergenic 40.0%
AGAAGGTAAGGTTGTGTATG+TGG - Chr8:5573348-5573367 MsG0880042223.01.T01:intron 40.0%
ATGTAATTGCAGCCGATAAC+TGG - Chr8:5571400-5571419 MsG0880042223.01.T01:intron 40.0%
CAGGACAAACTCCAAGAATT+TGG + Chr8:5573317-5573336 None:intergenic 40.0%
CAGGACTTCGATTAAAAGTG+TGG + Chr8:5572430-5572449 None:intergenic 40.0%
GACACACCATAACCAGTTAT+CGG + Chr8:5571415-5571434 None:intergenic 40.0%
TAAATCAGGCACTTTCCAGA+AGG - Chr8:5573099-5573118 MsG0880042223.01.T01:intron 40.0%
TATGTGGAAGACATAGCTGA+GGG - Chr8:5573364-5573383 MsG0880042223.01.T01:intron 40.0%
TATTCTTCAACAGATCCACC+TGG + Chr8:5572873-5572892 None:intergenic 40.0%
TGTGTGGGGGATAACTAATT+GGG - Chr8:5571480-5571499 MsG0880042223.01.T01:intron 40.0%
TGTTTGAAAACAGGTATGCC+AGG - Chr8:5572157-5572176 MsG0880042223.01.T01:intron 40.0%
TTGTGTGGGGGATAACTAAT+TGG - Chr8:5571479-5571498 MsG0880042223.01.T01:intron 40.0%
! GACGTTTACTTTGAGAACGT+TGG - Chr8:5573126-5573145 MsG0880042223.01.T01:intron 40.0%
! GTCAAAAAGGCACAACAGAA+TGG + Chr8:5572125-5572144 None:intergenic 40.0%
! GTTTACTTTGAGAACGTTGG+AGG - Chr8:5573129-5573148 MsG0880042223.01.T01:CDS 40.0%
!! GATTCTGGTTTCTTCGAAGT+AGG - Chr8:5572190-5572209 MsG0880042223.01.T01:intron 40.0%
!! GCCAAATTTGTTACACCTTC+AGG + Chr8:5573243-5573262 None:intergenic 40.0%
!! GTAATCACTTGTGTCGTTTC+GGG + Chr8:5572507-5572526 None:intergenic 40.0%
!! GTGTCTAAAGTTCTGGAATC+TGG - Chr8:5571430-5571449 MsG0880042223.01.T01:intron 40.0%
AATATGCCAACCAAGGCTTC+CGG + Chr8:5573402-5573421 None:intergenic 45.0%
ATAGCTGAGGGTCTTGAGAA+AGG - Chr8:5573376-5573395 MsG0880042223.01.T01:CDS 45.0%
CTACAAAGAAGAGCAAGACC+TGG - Chr8:5572918-5572937 MsG0880042223.01.T01:intron 45.0%
GACATATTGTGTGAGAGAGC+TGG - Chr8:5571761-5571780 MsG0880042223.01.T01:CDS 45.0%
GCCTCATATCAGAGAAGGTA+AGG - Chr8:5573336-5573355 MsG0880042223.01.T01:intron 45.0%
GGCCAATTCGCTAAATTGCA+TGG - Chr8:5572277-5572296 MsG0880042223.01.T01:intron 45.0%
GTATATCTTCTGCAACCAGG+TGG - Chr8:5572855-5572874 MsG0880042223.01.T01:intron 45.0%
GTATGTGGAAGACATAGCTG+AGG - Chr8:5573363-5573382 MsG0880042223.01.T01:intron 45.0%
TACCTTCTCTGATATGAGGC+AGG + Chr8:5573336-5573355 None:intergenic 45.0%
TTGCAGCCGATAACTGGTTA+TGG - Chr8:5571406-5571425 MsG0880042223.01.T01:intron 45.0%
TTGCATGGTTGCTATGTCGT+TGG - Chr8:5572292-5572311 MsG0880042223.01.T01:intron 45.0%
! ACCTGGATGCAGCATTGAAA+AGG - Chr8:5572935-5572954 MsG0880042223.01.T01:intron 45.0%
! ACCTTTTCAATGCTGCATCC+AGG + Chr8:5572939-5572958 None:intergenic 45.0%
!! AAGTGCTGGAAGTAAGGAGA+AGG - Chr8:5572315-5572334 MsG0880042223.01.T01:intron 45.0%
!! GTTTTTGTTTCAGCTGCCTC+TGG - Chr8:5572235-5572254 MsG0880042223.01.T01:intron 45.0%
!! TTCGGTGTCAGATTTCAGAC+AGG + Chr8:5572449-5572468 None:intergenic 45.0%
AAGTTGACCAACTGCTCCAG+AGG + Chr8:5572254-5572273 None:intergenic 50.0%
CCAGAATCAGCAGTCATTCC+TGG + Chr8:5572178-5572197 None:intergenic 50.0%
GAAGTAGGCTCTCCCAAGAA+AGG - Chr8:5572205-5572224 MsG0880042223.01.T01:intron 50.0%
GGAGCAGTTGGTCAACTTGT+TGG - Chr8:5572256-5572275 MsG0880042223.01.T01:intron 50.0%
GTCCTGCCTCATATCAGAGA+AGG - Chr8:5573331-5573350 MsG0880042223.01.T01:intron 50.0%
TGCGAGATCATTCCACACAC+AGG + Chr8:5573204-5573223 None:intergenic 50.0%
! TGCTATGTCGTTGGAAGTGC+TGG - Chr8:5572301-5572320 MsG0880042223.01.T01:intron 50.0%
!! CCAGGAATGACTGCTGATTC+TGG - Chr8:5572175-5572194 MsG0880042223.01.T01:intron 50.0%
!! CGTTGGAAGTGCTGGAAGTA+AGG - Chr8:5572309-5572328 MsG0880042223.01.T01:intron 50.0%
!! GACGGGTTAGCCATCATTGA+AGG - Chr8:5571734-5571753 MsG0880042223.01.T01:intron 50.0%
CATGGTCGCATACCTGTGTG+TGG - Chr8:5573189-5573208 MsG0880042223.01.T01:CDS 55.0%
CTGAGGGTCTTGAGAAAGGC+CGG - Chr8:5573380-5573399 MsG0880042223.01.T01:CDS 55.0%
GGACACTGACACGTCAACAC+CGG + Chr8:5572560-5572579 None:intergenic 55.0%
GTGTGAGAGAGCTGGTTGTC+TGG - Chr8:5571769-5571788 MsG0880042223.01.T01:CDS 55.0%
TTGAGAAAGGCCGGAAGCCT+TGG - Chr8:5573389-5573408 MsG0880042223.01.T01:CDS 55.0%
GAAAGGCCGGAAGCCTTGGT+TGG - Chr8:5573393-5573412 MsG0880042223.01.T01:CDS 60.0%
!! TCAGCTGCCTCTGGAGCAGT+TGG - Chr8:5572244-5572263 MsG0880042223.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 5571290 5573426 5571290 ID=MsG0880042223.01;Name=MsG0880042223.01
Chr8 mRNA 5571290 5573426 5571290 ID=MsG0880042223.01.T01;Parent=MsG0880042223.01;Name=MsG0880042223.01.T01;_AED=0.47;_eAED=0.51;_QI=0|0.6|0.5|1|0.8|0.83|6|0|225
Chr8 exon 5573376 5573426 5573376 ID=MsG0880042223.01.T01:exon:1321;Parent=MsG0880042223.01.T01
Chr8 exon 5573127 5573304 5573127 ID=MsG0880042223.01.T01:exon:1320;Parent=MsG0880042223.01.T01
Chr8 exon 5572380 5572546 5572380 ID=MsG0880042223.01.T01:exon:1319;Parent=MsG0880042223.01.T01
Chr8 exon 5571760 5571842 5571760 ID=MsG0880042223.01.T01:exon:1318;Parent=MsG0880042223.01.T01
Chr8 exon 5571493 5571609 5571493 ID=MsG0880042223.01.T01:exon:1317;Parent=MsG0880042223.01.T01
Chr8 exon 5571290 5571368 5571290 ID=MsG0880042223.01.T01:exon:1316;Parent=MsG0880042223.01.T01
Chr8 CDS 5573376 5573426 5573376 ID=MsG0880042223.01.T01:cds;Parent=MsG0880042223.01.T01
Chr8 CDS 5573127 5573304 5573127 ID=MsG0880042223.01.T01:cds;Parent=MsG0880042223.01.T01
Chr8 CDS 5572380 5572546 5572380 ID=MsG0880042223.01.T01:cds;Parent=MsG0880042223.01.T01
Chr8 CDS 5571760 5571842 5571760 ID=MsG0880042223.01.T01:cds;Parent=MsG0880042223.01.T01
Chr8 CDS 5571493 5571609 5571493 ID=MsG0880042223.01.T01:cds;Parent=MsG0880042223.01.T01
Chr8 CDS 5571290 5571368 5571290 ID=MsG0880042223.01.T01:cds;Parent=MsG0880042223.01.T01
Gene Sequence

>MsG0880042223.01.T01

ATGAGATTAGAATTTCAGTTTCATTTTAAGTCGCGGATCAAGATTGAAATTCCGATAACTGGTTATGGTGTGTCTAAAGTTCTGGAATCTGGACACAAAGATTATAAAGAAGGTGATATTGTGTGGGGGATAACTAATTGGGAAGAGTACAGCTTGATCCCTGCAGCTCAAATACATTTCAAAATTGAGCACACTGATGTTCCTCTTTCATACTATACTGGCATTCTTGGTATGCCAGGAATGACTGCTGATTCTGGTTTCTTCGAAGTAGGCTCTCCCAAGAAAGGAGAGAATGTTTTTGTTTCAGCTGCCTCTGGAGCAGTTGGTCAACTTGTTGGCCAATTCGCTAAATTGCATGGTTGCTATGTCGTTGGAAGTGCTGGAAGTAAGGAGAAGGTGGATCTGTTGAAGAATAAATTTGGATACGATGAAGCCATTAACTACAAAGAAGAGCAAGACCTGGATGCAGCATTGAAAAGGCACTTTCCAGAAGGCATTGACGTTTACTTTGAGAACGTTGGAGGCAAGACACTTGATGCTGTACTCTTGAATATGAAATTACATGGTCGCATACCTGTGTGTGGAATGATCTCGCAAGAAGGTAAGGTTGTGTATGTGGAAGACATAGCTGAGGGTCTTGAGAAAGGCCGGAAGCCTTGGTTGGCATATTTAGTG

Protein sequence

>MsG0880042223.01.T01

MRLEFQFHFKSRIKIEIPITGYGVSKVLESGHKDYKEGDIVWGITNWEEYSLIPAAQIHFKIEHTDVPLSYYTGILGMPGMTADSGFFEVGSPKKGENVFVSAASGAVGQLVGQFAKLHGCYVVGSAGSKEKVDLLKNKFGYDEAINYKEEQDLDAALKRHFPEGIDVYFENVGGKTLDAVLLNMKLHGRIPVCGMISQEGKVVYVEDIAEGLEKGRKPWLAYLV