AlfalfaGEDB | MsG0880042558.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042558.01

KEGG: -
GO: GO:0005515 GO:0007165 GO:0043531
PFAM: PF00931 PF01582

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042558.01.T01	XP_003627179.2	71.329	1144	246	8	13	1084	24	1157	0	1573

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042558.01.T01	V9M398	34.169	878	501	17	16	829	27	891	2.84E-120	407

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042558.01.T01	G7LIX4	71.329	1144	246	8	13	1084	24	1157	0.0	1573

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000599.01	MsG0880042558.01	0.807981	3.875489e-50	2.189373e-47
MsG0180000949.01	MsG0880042558.01	0.822992	1.759907e-53	1.496454e-50
MsG0280008932.01	MsG0880042558.01	0.820964	5.191863e-53	4.168961e-50
MsG0280011401.01	MsG0880042558.01	0.801969	7.006064e-49	3.390974e-46
MsG0380012331.01	MsG0880042558.01	0.831676	1.458373e-55	1.593904e-52
MsG0380012438.01	MsG0880042558.01	0.805779	1.132349e-49	6.043609e-47
MsG0380014727.01	MsG0880042558.01	0.803218	3.872300e-49	1.934930e-46
MsG0380014866.01	MsG0880042558.01	0.810295	1.237482e-50	7.431018e-48
MsG0380015215.01	MsG0880042558.01	-0.804789	1.824651e-49	9.494086e-47
MsG0380015804.01	MsG0880042558.01	0.814008	1.917332e-51	1.271589e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880042558.01.T01	MTR_8g018480	71.329	1144	246	8	13	1084	24	1157	1573
MsG0880042558.01.T01	MTR_8g016440	67.973	1174	207	13	14	1123	16	1084	1506
MsG0880042558.01.T01	MTR_8g035990	67.476	1153	295	10	1	1084	3	1144	1470
MsG0880042558.01.T01	MTR_0363s0030	74.082	926	201	6	3	893	1	922	1337
MsG0880042558.01.T01	MTR_8g038815	74.082	926	201	6	3	893	1	922	1337
MsG0880042558.01.T01	MTR_8g016580	70.724	994	169	14	133	1091	18	924	1315
MsG0880042558.01.T01	MTR_8g016650	70.724	994	169	14	133	1091	13	919	1315
MsG0880042558.01.T01	MTR_8g016440	80.824	777	115	4	14	757	16	791	1245
MsG0880042558.01.T01	MTR_8g076910	67.716	858	243	5	1	825	1	857	1118
MsG0880042558.01.T01	MTR_8g038815	77.379	641	139	3	255	893	1	637	975

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042558.01.T01	AT5G17680	34.642	866	506	15	15	829	17	873	6.03e-139	454
MsG0880042558.01.T01	AT5G17680	34.527	866	506	16	15	829	17	872	1.53e-136	448
MsG0880042558.01.T01	AT5G18360	31.765	850	512	19	15	830	15	830	7.38e-116	382
MsG0880042558.01.T01	AT4G08450	32.648	876	499	20	3	830	1	833	2.02e-115	389
MsG0880042558.01.T01	AT4G08450	32.648	876	499	20	3	830	1	833	2.56e-115	388
MsG0880042558.01.T01	AT5G46270	32.240	884	509	21	3	838	1	842	2.87e-112	378
MsG0880042558.01.T01	AT5G46270	32.240	884	509	21	3	838	1	842	2.97e-112	378
MsG0880042558.01.T01	AT5G46270	31.917	871	505	20	16	838	23	853	6.40e-111	374
MsG0880042558.01.T01	AT5G46270	31.917	871	505	20	16	838	23	853	6.40e-111	374
MsG0880042558.01.T01	AT5G46270	31.917	871	505	19	16	838	23	853	7.52e-111	374

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Find 186 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTTTGGTATGAATG+TGG	0.551515	8:-10535909	None:intergenic
AAAACTTTGGAATGGAGTAG+TGG	0.603400	8:+10534705	MsG0880042558.01.T01:CDS
AAAATCTGAGATATATTCTA+TGG	0.275626	8:+10534599	MsG0880042558.01.T01:CDS
AAACTTCTAGAAAACTTGAT+TGG	0.341487	8:+10538044	MsG0880042558.01.T01:CDS
AAACTTGAACCTCTTTGAGT+CGG	0.558037	8:-10535716	None:intergenic
AAAGGCAACGTGGCACCATC+AGG	0.455863	8:+10536631	MsG0880042558.01.T01:CDS
AAAGTTGTGTAGAAGGGTAA+TGG	0.488317	8:-10536049	None:intergenic
AAATCTGAGATATATTCTAT+GGG	0.602606	8:+10534600	MsG0880042558.01.T01:CDS
AACAAAAGCTTTCATATTTC+TGG	0.140546	8:-10537997	None:intergenic
AACAAAGTCTCACCTGAGGA+TGG	0.558175	8:+10533853	MsG0880042558.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTGTTTGGTATGAATG+TGG	-	Chr8:10535912-10535931	None:intergenic	30.0%
AAAATACACATGTAACGAAG+TGG	-	Chr8:10533063-10533082	None:intergenic	30.0%
AAACATTGGTATTAATCGAC+GGG	-	Chr8:10532318-10532337	None:intergenic	30.0%
AAAGTCATGTGGAAAAACTT+TGG	+	Chr8:10534692-10534711	MsG0880042558.01.T01:CDS	30.0%
AAATAAGAAAGCAAATGGTG+AGG	-	Chr8:10537073-10537092	None:intergenic	30.0%
AAGCTAGACATTGTTAAGAT+TGG	+	Chr8:10536607-10536626	MsG0880042558.01.T01:CDS	30.0%
AAGGTCTCTTTCAAATATGA+TGG	+	Chr8:10533466-10533485	MsG0880042558.01.T01:CDS	30.0%
AAGTCTCAACAAAGTTTATG+AGG	+	Chr8:10537243-10537262	MsG0880042558.01.T01:intron	30.0%
AAGTTCAAATCATTGGACTT+TGG	+	Chr8:10533395-10533414	MsG0880042558.01.T01:CDS	30.0%
AATCTTAAACATGTGAACCT+TGG	+	Chr8:10535147-10535166	MsG0880042558.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	10531785	10538084	10531785	ID=MsG0880042558.01;Name=MsG0880042558.01
Chr8	mRNA	10531785	10538084	10531785	ID=MsG0880042558.01.T01;Parent=MsG0880042558.01;Name=MsG0880042558.01.T01;_AED=0.22;_eAED=0.26;_QI=0\|0\|0\|1\|1\|1\|7\|0\|1187
Chr8	exon	10531785	10532057	10531785	ID=MsG0880042558.01.T01:exon:4366;Parent=MsG0880042558.01.T01
Chr8	exon	10532140	10532264	10532140	ID=MsG0880042558.01.T01:exon:4367;Parent=MsG0880042558.01.T01
Chr8	exon	10533252	10534347	10533252	ID=MsG0880042558.01.T01:exon:4368;Parent=MsG0880042558.01.T01
Chr8	exon	10534433	10534726	10534433	ID=MsG0880042558.01.T01:exon:4369;Parent=MsG0880042558.01.T01
Chr8	exon	10535069	10536191	10535069	ID=MsG0880042558.01.T01:exon:4370;Parent=MsG0880042558.01.T01
Chr8	exon	10536278	10536732	10536278	ID=MsG0880042558.01.T01:exon:4371;Parent=MsG0880042558.01.T01
Chr8	exon	10537887	10538084	10537887	ID=MsG0880042558.01.T01:exon:4372;Parent=MsG0880042558.01.T01
Chr8	CDS	10531785	10532057	10531785	ID=MsG0880042558.01.T01:cds;Parent=MsG0880042558.01.T01
Chr8	CDS	10532140	10532264	10532140	ID=MsG0880042558.01.T01:cds;Parent=MsG0880042558.01.T01
Chr8	CDS	10533252	10534347	10533252	ID=MsG0880042558.01.T01:cds;Parent=MsG0880042558.01.T01
Chr8	CDS	10534433	10534726	10534433	ID=MsG0880042558.01.T01:cds;Parent=MsG0880042558.01.T01
Chr8	CDS	10535069	10536191	10535069	ID=MsG0880042558.01.T01:cds;Parent=MsG0880042558.01.T01
Chr8	CDS	10536278	10536732	10536278	ID=MsG0880042558.01.T01:cds;Parent=MsG0880042558.01.T01
Chr8	CDS	10537887	10538084	10537887	ID=MsG0880042558.01.T01:cds;Parent=MsG0880042558.01.T01

Gene Sequence

>MsG0880042558.01.T01

ATGGTTATGGCTTCTTCTTCCTCTCACGACGCTTCTTTGAAGAAATACGATGTTTTCATCAGCTTTCGAGGCGAAGATACACGCGCTGGTTTCATAAGCCATCTTTTTAAAGCTTTGCGCCGAGACCATATCCGTACCTACATCGACAACATGATCGAAAAAGGAGATCAAGTTTGGGGAGAACTTGTGAAGGCAATGAAAGAATCCACTTTGTTTCTTGTCGTGTTCTCGGTCTTCAACATGGTGTTTGAACGAACTCGTTCAAATAATGGATCTGGGAGTTATGGCACTGCGATGGCTAAACACAAGAAGCAAGGCAACGACCATGAGATGCAAAACTGGAATACTGCTCTTTCTCAAGCAGCTAATTTGTCTGGTTTTCATTCAACCACATACAGGACTGAATCCGAATTAATTGAAGACATTACCAGAGCTGTATTAAGAAAATTAAATCAACAATGCGCAATTGATCTTACATGCAATTTCATACCTGATGAAAACTATTGGAGCATTCAATCTTTAATAAAATTTGATTCAACAGAAGTTCAAATCATTGGACTTTGGGGTATGGGAGGCATTGGTAAGACAACCCTTGCCACTGCTATGTTTCAAAAGGTCTCTTTCAAATATGATGGCAGTTGCTTCTTTGAAAAGGTGACAGAAGTATCAAAAAGTCATGGAATCAATTACACATGCAACAAACTTCTTTCTAAGTTACTAAAAGAAGATCTTGATATTGACACTCCCAAATTAATACCATCCATGATCAGAAGAAGACTCAAAAGCATGAAATCTTTCATCGTACTAGATGATGTACATAATTCAGAACTTTTGCAAAACTTGATTGGAGTGGGACATGGTTGGCTAGGATCTGGTAGCACAGTCATTGTGACTGCTAGGGATAAGCATGTGCTGATGAGGGGAGGAATTGAAACAATTTATGACGTTAAGAAGATGAACTCCCGAAATTCCCTCAGACTTTTTAGTTTGAATGCTTTTAACAAAGTCTCACCTGAGGATGGATATGTGGAGCTCTCAAAAAGAGCAATTGATTATGCCAGAGGAAACCCTTTAGCTTTGCAAGTATTGGGATCATTACTTAGATGTAAAAGTGAAATAGAATGGGATTGTGCATTAGCTAAACTGAAAAAAATGCCAAACAACGAAATTGATTCTATATTTAGAATGAGTTTTAATGAATTGGATGAAACAGAGCAAAATATATTTTTGGATATTGCATGCTTTTTCAAAGGACAGGAAAGGAATAGCATAACAAAAATATTGAATGAGTGTGGATTCTTCGCTGATATAGGGATAAGTCATCTTATAGACAAGGCTCTTGTAAGGGTTGACTCTGAAAATTGCATACAAATGCATGGCTTAATACAGGAAATGGGAAAACAAATTGTTCGTGAAGAATCACTTAAGAATCCTGGACAACGCAGTAGATTATGTGATCCTAAGGAAGTTTATGATGTATTGAAAAATAATAGAGGATCTGAGAAAGTTGAAGCCATATTTTTAGATGCTACTGAATACACACATTTAATTTTAAGACCCGATGCATTTGAAAAGATGGAAAATCTAAGGTTACTTGCTTTTCAAGACCGCAAAGGAGTTAAATCTATAAGCGTTCCACACCGTCTTGGTTTATTGCCAGAAAATCTGAGATATATTCTATGGGATGGCTATCCATTGAAAACTCTCCCTCCAACCTCCTGTCTTGAAATGCTTGTGGAGCTTTCCTTGAAACAAAGTCATGTGGAAAAACTTTGGAATGGAGTAGTGAATTTGCCCAAATTAGAGAAAATTGACCTGAGTCACTTCAAAAAGCTGATAGAGTGTCCAAATGTGTCTGGTTCCCCGAATCTTAAACATGTGAACCTTGGTTATTGTGGAAGCATGTCTGAAGTTGATTCATCAATTTTCCATCTCCAAAAGCTTGAATTTTTAAACCTGACTAGCTGTAGGTCACTTAAGAGCCTTTCCAGTAACACTTGTTCACCAGCCCTCTGTTTTTTGAATGCTATGGATTGCATCAATCTCAAAGAGTTCTCAGTCCCATTTGATTCCGTTTATGGTCTGCGTTTGTTATTATCAAGGTGGGATGGGAATGAACTTCCATCATCAATATTGCATACACAAAATATTGAACGCTTTATCTTTCCTATTAGTGATTGTCTTGTGGACCTTCCTGAAAACTTTTGCGATTACATTTTGCTTACTAGTCAACAGAATCGTGAAGATGACCCTTTCATTACCTTAGATAAAGTACTTTCTAGTCCTGCCTTCCTCACTTTAAAACACTTATACTTTTATAAAATTCCTTTGTTGTCTGAAATCCCAGACAGTATCTCCTTACTATCATCATTAGAGAAATTGATGCTAATTCATATAGCCATTAAAAGCTTGCCTGAAACCATTAAGTATCTTCCCCGACTCAAAGAGGTTCAAGTTTACAACTGTAAATTGCTTCAATCTATTCCGACACTTCATCACTTCATTCCAATATTGGTTTGCTGGAATTGTGAATCTCTTGAGAAAGTTTCAACGGTTGAACCATATGACAAATCGTTGCCCAAGTATCTTCATCGTTTTACAGTGCTCCTTAACTGCAAAAAATTGGATCCACATTCATACCAAACAGTTTTGAAAGATGCTATCCATTGGATTGAACTTGAAGCAAGAAAAAATTCAGAAAACGAAGATGCACACAATGATTTTATTAAGTACATGTTACCTGCTATGCCTGGCATGGAAAATTGGTTCCATTACCCTTCTACACAACTTTCTGTCACTCTTGAGCTTCCTTCTAATTTGTTGGGTTTTGTCTACTACATGGTTCTTTCTCAAGGCCATATGGGATATGATGTAGGTTTTGGATGTGAGTGCTACTTGGAAAATAGTTCAGATCATTTGCTTTTATGGTATGATCCTCGAAGTTGCAAACAGATAATGGATGCAGTTGAACAAACAAAAGCCATTAGTGATGTGAACAGCACCAGTTACAATCCAAAGCTTACATTTACATTCTTTATTGATGAAACTCTATATGATGAAGTAGAAATAAAAGAGTGTGGATTTCGCTGGATTTATCAAGAGGAAACAGTTTCTTCGATAATTTCTGAATCACATGATGAAGAAGAAATTTTTCAATCCAATGATCATGAAGAAATAGTTTCTCCAACAAATTTTGAATCGGATGCTCTTGAAGACACAATTCCTCCTAGAAAGAAATTAAAGCTAGACATTGTTAAGATTGGAAAAGGCAACGTGGCACCATCAGGTGGCGAATCATATTCTGTTAATGATCAAAGACAGGTTGCATCTAATGCTGAAATTAAGGGCACGAGAAAGAGTTGCAGAATGTTTCTTAGAAACGTGACAGAAGAATCGGAAATGCATGGACTCAATTACAAGGAAGATGATGGTCTTGACAGGCCACTAAAAGTACCTGTTATTGTTATGAGAAGACTCCAGAAATATGAAAGCTTTTGTTGTACTAGATGGTGTGAATACTTCAAAACTTCTAGAAAACTTGATTGGAATTGGGTGCGAGTGTAG

Protein sequence

>MsG0880042558.01.T01

MVMASSSSHDASLKKYDVFISFRGEDTRAGFISHLFKALRRDHIRTYIDNMIEKGDQVWGELVKAMKESTLFLVVFSVFNMVFERTRSNNGSGSYGTAMAKHKKQGNDHEMQNWNTALSQAANLSGFHSTTYRTESELIEDITRAVLRKLNQQCAIDLTCNFIPDENYWSIQSLIKFDSTEVQIIGLWGMGGIGKTTLATAMFQKVSFKYDGSCFFEKVTEVSKSHGINYTCNKLLSKLLKEDLDIDTPKLIPSMIRRRLKSMKSFIVLDDVHNSELLQNLIGVGHGWLGSGSTVIVTARDKHVLMRGGIETIYDVKKMNSRNSLRLFSLNAFNKVSPEDGYVELSKRAIDYARGNPLALQVLGSLLRCKSEIEWDCALAKLKKMPNNEIDSIFRMSFNELDETEQNIFLDIACFFKGQERNSITKILNECGFFADIGISHLIDKALVRVDSENCIQMHGLIQEMGKQIVREESLKNPGQRSRLCDPKEVYDVLKNNRGSEKVEAIFLDATEYTHLILRPDAFEKMENLRLLAFQDRKGVKSISVPHRLGLLPENLRYILWDGYPLKTLPPTSCLEMLVELSLKQSHVEKLWNGVVNLPKLEKIDLSHFKKLIECPNVSGSPNLKHVNLGYCGSMSEVDSSIFHLQKLEFLNLTSCRSLKSLSSNTCSPALCFLNAMDCINLKEFSVPFDSVYGLRLLLSRWDGNELPSSILHTQNIERFIFPISDCLVDLPENFCDYILLTSQQNREDDPFITLDKVLSSPAFLTLKHLYFYKIPLLSEIPDSISLLSSLEKLMLIHIAIKSLPETIKYLPRLKEVQVYNCKLLQSIPTLHHFIPILVCWNCESLEKVSTVEPYDKSLPKYLHRFTVLLNCKKLDPHSYQTVLKDAIHWIELEARKNSENEDAHNDFIKYMLPAMPGMENWFHYPSTQLSVTLELPSNLLGFVYYMVLSQGHMGYDVGFGCECYLENSSDHLLLWYDPRSCKQIMDAVEQTKAISDVNSTSYNPKLTFTFFIDETLYDEVEIKECGFRWIYQEETVSSIISESHDEEEIFQSNDHEEIVSPTNFESDALEDTIPPRKKLKLDIVKIGKGNVAPSGGESYSVNDQRQVASNAEIKGTRKSCRMFLRNVTEESEMHGLNYKEDDGLDRPLKVPVIVMRRLQKYESFCCTRWCEYFKTSRKLDWNWVRV*