AlfalfaGEDB | MsG0880042592.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042592.01

KEGG: K02914
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF00468

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042592.01.T01	XP_013444363.1	84.416	154	3	1	1	154	1	133	1.12E-82	249

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042592.01.T01	B8GRD4	73.171	41	11	0	112	152	2	42	5.10E-12	60.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042592.01.T01	B7FGJ2	84.416	154	3	1	1	154	1	133	5.34e-83	249

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280009372.01	MsG0880042592.01	0.806394	8.403387e-50	4.555886e-47
MsG0480021293.01	MsG0880042592.01	0.813796	2.134454e-51	1.407496e-48
MsG0480023962.01	MsG0880042592.01	0.805453	1.325121e-49	7.013444e-47
MsG0680033646.01	MsG0880042592.01	0.815361	9.616523e-52	6.616090e-49
MsG0780041461.01	MsG0880042592.01	0.805029	1.626064e-49	8.512523e-47
MsG0880042592.01	MsG0880046844.01	0.813757	2.177140e-51	1.434111e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042592.01.T01	MTR_8g017420	84.416	154	3	1	1	154	1	133	1.35e-86	249

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042592.01.T01	AT3G13882	50.877	171	43	7	1	154	1	147	2.07e-43	140
MsG0880042592.01.T01	AT3G13882	46.386	166	53	6	23	154	38	201	6.13e-35	120

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Find 60 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACTAAGAACTAACAT+TGG	0.555802	8:-11103390	None:intergenic
AACGTTTCCACCGTTGAAAA+AGG	0.337295	8:+11103426	MsG0880042592.01.T01:three_prime_UTR
AAGAAGCTTCTTTGCTCTGA+TGG	0.444852	8:+11100319	MsG0880042592.01.T01:CDS
AAGGACAGAGAAAGTACCAT+CGG	0.597962	8:-11100386	None:intergenic
AATGCAATTGATCGGTTAAA+TGG	0.244533	8:+11100655	MsG0880042592.01.T01:CDS
AATTACCCTTCTGCCACCCC+TGG	0.487372	8:-11103026	None:intergenic
AATTGCTCGAAGAGTAGCGA+AGG	0.605700	8:+11103045	MsG0880042592.01.T01:CDS
ACAATACTTGCATGAAAATA+CGG	0.434888	8:-11103197	None:intergenic
ACCCATGATTCCTCTTCCGC+CGG	0.545911	8:-11102147	None:intergenic
ACTGATTCAGAGTCGTCTTG+AGG	0.573254	8:-11100295	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTCAGAAAACATCGTC+GGG	-	Chr8:11102001-11102020	None:intergenic	30.0%
AACTTCATCAAATTCAAGCT+GGG	+	Chr8:11100844-11100863	MsG0880042592.01.T01:intron	30.0%
AATGCAATTGATCGGTTAAA+TGG	+	Chr8:11100655-11100674	MsG0880042592.01.T01:CDS	30.0%
ACAATTAACTCAATGATGAG+GGG	-	Chr8:11102772-11102791	None:intergenic	30.0%
ACATTAGAGAGAGAAAAAGT+TGG	+	Chr8:11101065-11101084	MsG0880042592.01.T01:intron	30.0%
ACTTCCCATTTATTCACAAA+AGG	-	Chr8:11102892-11102911	None:intergenic	30.0%
AGAACCTATAGTAGAAAAGA+TGG	+	Chr8:11101091-11101110	MsG0880042592.01.T01:intron	30.0%
ATATAGATATATTTGGGGAC+AGG	-	Chr8:11101595-11101614	None:intergenic	30.0%
ATGACTATGCAAGATCAAAT+AGG	+	Chr8:11102336-11102355	MsG0880042592.01.T01:intron	30.0%
ATGATAAAACTAGGTGGAAT+AGG	+	Chr8:11103141-11103160	MsG0880042592.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	11100160	11103461	11100160	ID=MsG0880042592.01;Name=MsG0880042592.01
Chr8	mRNA	11100160	11103461	11100160	ID=MsG0880042592.01.T01;Parent=MsG0880042592.01;Name=MsG0880042592.01.T01;_AED=0.38;_eAED=0.42;_QI=0\|0.33\|0.5\|1\|0\|0\|4\|371\|154
Chr8	exon	11100160	11100402	11100160	ID=MsG0880042592.01.T01:exon:4576;Parent=MsG0880042592.01.T01
Chr8	exon	11100640	11100691	11100640	ID=MsG0880042592.01.T01:exon:4577;Parent=MsG0880042592.01.T01
Chr8	exon	11102083	11102179	11102083	ID=MsG0880042592.01.T01:exon:4578;Parent=MsG0880042592.01.T01
Chr8	exon	11103018	11103461	11103018	ID=MsG0880042592.01.T01:exon:4579;Parent=MsG0880042592.01.T01
Chr8	CDS	11100160	11100402	11100160	ID=MsG0880042592.01.T01:cds;Parent=MsG0880042592.01.T01
Chr8	CDS	11100640	11100691	11100640	ID=MsG0880042592.01.T01:cds;Parent=MsG0880042592.01.T01
Chr8	CDS	11102083	11102179	11102083	ID=MsG0880042592.01.T01:cds;Parent=MsG0880042592.01.T01
Chr8	CDS	11103018	11103090	11103018	ID=MsG0880042592.01.T01:cds;Parent=MsG0880042592.01.T01
Chr8	three_prime_UTR	11103091	11103461	11103091	ID=MsG0880042592.01.T01:three_prime_utr;Parent=MsG0880042592.01.T01

Gene Sequence

>MsG0880042592.01.T01

ATGGCTTCAAAATCGCTTCTGAGAAATGGTGCTGCATTGTTGAATCGATTATCACTATCAAATCCAAAATCACTTATTAATTACAATAATCCTCAACCTTATCTTTTCCCATCCATATCCAAGCTCCAAAATTTTCCTCAAGACGACTCTGAATCAGTGAAGAAGCTTCTTTGCTCTGATGGGTTTCTCTACCCTTGTGGCCTCCCTTCTCTTCGCTTCTTCTTACCCGATGGTACTTTCTCTTTGAAGTTTATTTCTAATGCAATTGATCGGTTAAATGGTGGATTGATGGATGGGGATTCTTCATCAGATGAAGCAATGATTTTATTCCCAAAAAGGACATTTCAACCTAGCACTATCCGGCGGAAGAGGAATCATGGGTTTTTTGCTCGGAAGGCAACCAGGGGTGGCAGAAGGGTAATTGCTCGAAGAGTAGCGAAGGGTCGGTTTAGGATCACAGCTTAG

Protein sequence

>MsG0880042592.01.T01

MASKSLLRNGAALLNRLSLSNPKSLINYNNPQPYLFPSISKLQNFPQDDSESVKKLLCSDGFLYPCGLPSLRFFLPDGTFSLKFISNAIDRLNGGLMDGDSSSDEAMILFPKRTFQPSTIRRKRNHGFFARKATRGGRRVIARRVAKGRFRITA*