AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042592.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042592.01.T01 MTR_8g017420 84.416 154 3 1 1 154 1 133 1.35e-86 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042592.01.T01 AT3G13882 50.877 171 43 7 1 154 1 147 2.07e-43 140
MsG0880042592.01.T01 AT3G13882 46.386 166 53 6 23 154 38 201 6.13e-35 120

Find 60 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTAATTAATAAGTGATTT+TGG 0.202802 8:-11100223 None:intergenic
AGTCGTCTTGAGGAAAATTT+TGG 0.204395 8:-11100285 None:intergenic
AATGCAATTGATCGGTTAAA+TGG 0.244533 8:+11100655 MsG0880042592.01.T01:CDS
CCAAGACTGCTTAATGATAT+AGG 0.296043 8:+11103307 MsG0880042592.01.T01:three_prime_UTR
AACGTTTCCACCGTTGAAAA+AGG 0.337295 8:+11103426 MsG0880042592.01.T01:three_prime_UTR
GCAAGTATTGTGTATGGATA+TGG 0.351871 8:+11103209 MsG0880042592.01.T01:three_prime_UTR
ATGATAAAACTAGGTGGAAT+AGG 0.366875 8:+11103141 MsG0880042592.01.T01:three_prime_UTR
GAGTAGCGAAGGGTCGGTTT+AGG 0.370639 8:+11103056 MsG0880042592.01.T01:CDS
TTTCATGCAAGTATTGTGTA+TGG 0.379644 8:+11103203 MsG0880042592.01.T01:three_prime_UTR
CAAGACTGCTTAATGATATA+GGG 0.385354 8:+11103308 MsG0880042592.01.T01:three_prime_UTR
TAAGTTTGAGGTAGATAGAA+TGG 0.419011 8:+11103345 MsG0880042592.01.T01:three_prime_UTR
TCAAAATCGCTTCTGAGAAA+TGG 0.424243 8:+11100166 MsG0880042592.01.T01:CDS
TCGGTTAAATGGTGGATTGA+TGG 0.432020 8:+11100666 MsG0880042592.01.T01:CDS
ACAATACTTGCATGAAAATA+CGG 0.434888 8:-11103197 None:intergenic
CCTATATCATTAAGCAGTCT+TGG 0.443855 8:-11103307 None:intergenic
AAGAAGCTTCTTTGCTCTGA+TGG 0.444852 8:+11100319 MsG0880042592.01.T01:CDS
CTCTTCCGCCGGATAGTGCT+AGG 0.461264 8:-11102136 None:intergenic
TAGGTGGAATAGGACAAAAC+AGG 0.461845 8:+11103151 MsG0880042592.01.T01:three_prime_UTR
AGAAGCTTCTTTGCTCTGAT+GGG 0.462280 8:+11100320 MsG0880042592.01.T01:CDS
AGGCAACCAGGGGTGGCAGA+AGG 0.465796 8:+11103020 MsG0880042592.01.T01:CDS
CTAGCACTATCCGGCGGAAG+AGG 0.469377 8:+11102137 MsG0880042592.01.T01:CDS
TTTGGAGCTTGGATATGGAT+GGG 0.482608 8:-11100267 None:intergenic
GCTTGAGCAGGAAGGCAACC+AGG 0.484277 8:+11103008 MsG0880042592.01.T01:intron
ATCCGGCGGAAGAGGAATCA+TGG 0.485130 8:+11102145 MsG0880042592.01.T01:CDS
AATTACCCTTCTGCCACCCC+TGG 0.487372 8:-11103026 None:intergenic
CTTCGCTTCTTCTTACCCGA+TGG 0.491386 8:+11100370 MsG0880042592.01.T01:CDS
CGAAGAGAAGGGAGGCCACA+AGG 0.498758 8:-11100352 None:intergenic
CATTTCAACCTAGCACTATC+CGG 0.508750 8:+11102128 MsG0880042592.01.T01:CDS
TGATTGATTTACTAAGTTTG+AGG 0.514915 8:+11103333 MsG0880042592.01.T01:three_prime_UTR
CTCGAAGAGTAGCGAAGGGT+CGG 0.516295 8:+11103050 MsG0880042592.01.T01:CDS
AGCAGGAAGGCAACCAGGGG+TGG 0.518385 8:+11103013 MsG0880042592.01.T01:intron
GGTAAGAAGAAGCGAAGAGA+AGG 0.522679 8:-11100364 None:intergenic
GTTCACTTCATGATAAAACT+AGG 0.526444 8:+11103132 MsG0880042592.01.T01:three_prime_UTR
GATATGGATGGGAAAAGATA+AGG 0.527791 8:-11100256 None:intergenic
ACCCATGATTCCTCTTCCGC+CGG 0.545911 8:-11102147 None:intergenic
TTATTTCTAATGCAATTGAT+CGG 0.551035 8:+11100647 MsG0880042592.01.T01:CDS
GAAGAGAAGGGAGGCCACAA+GGG 0.551312 8:-11100351 None:intergenic
GATGGGTTTCTCTACCCTTG+TGG 0.551941 8:+11100337 MsG0880042592.01.T01:CDS
AAACTACTAAGAACTAACAT+TGG 0.555802 8:-11103390 None:intergenic
GCAATTGATCGGTTAAATGG+TGG 0.565260 8:+11100658 MsG0880042592.01.T01:CDS
TTACATATTATTGCAGTAGA+CGG 0.566801 8:-11103267 None:intergenic
ACTGATTCAGAGTCGTCTTG+AGG 0.573254 8:-11100295 None:intergenic
GGCAACCAGGGGTGGCAGAA+GGG 0.575920 8:+11103021 MsG0880042592.01.T01:CDS
GCTTAGTTCATTGACTTCAG+AGG 0.581838 8:+11103085 MsG0880042592.01.T01:exon
CTTGAGCAGGAAGGCAACCA+GGG 0.589184 8:+11103009 MsG0880042592.01.T01:intron
GATGGGAAAAGATAAGGTTG+AGG 0.593924 8:-11100250 None:intergenic
GTAAGAAGAAGCGAAGAGAA+GGG 0.596370 8:-11100363 None:intergenic
TCCGGCGGAAGAGGAATCAT+GGG 0.596834 8:+11102146 MsG0880042592.01.T01:CDS
AAGGACAGAGAAAGTACCAT+CGG 0.597962 8:-11100386 None:intergenic
AATTGCTCGAAGAGTAGCGA+AGG 0.605700 8:+11103045 MsG0880042592.01.T01:CDS
TATCATGAAGTGAACTAAGG+TGG 0.611768 8:-11103124 None:intergenic
AGGACAGAGAAAGTACCATC+GGG 0.628162 8:-11100385 None:intergenic
CTAAGAACTAACATTGGACA+TGG 0.637813 8:-11103384 None:intergenic
TTAAATGGTGGATTGATGGA+TGG 0.646920 8:+11100670 MsG0880042592.01.T01:CDS
AGAAGAAGCGAAGAGAAGGG+AGG 0.653748 8:-11100360 None:intergenic
TTGAGCAGGAAGGCAACCAG+GGG 0.665750 8:+11103010 MsG0880042592.01.T01:intron
AGGTGGAATAGGACAAAACA+GGG 0.682322 8:+11103152 MsG0880042592.01.T01:three_prime_UTR
ATTGCTCGAAGAGTAGCGAA+GGG 0.713596 8:+11103046 MsG0880042592.01.T01:CDS
CACTTCATGATAAAACTAGG+TGG 0.714458 8:+11103135 MsG0880042592.01.T01:three_prime_UTR
TTCAACCTAGCACTATCCGG+CGG 0.728956 8:+11102131 MsG0880042592.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAAAATATATTCTAC+AGG - Chr8:11102039-11102058 None:intergenic 15.0%
!! AGAAAATAAAATAAACATAG+TGG + Chr8:11100983-11101002 MsG0880042592.01.T01:intron 15.0%
!! CTAAAAAAATATATTCTACA+GGG - Chr8:11102038-11102057 None:intergenic 15.0%
!!! ATTTGAAATTGAAGAAAAAA+TGG + Chr8:11100602-11100621 MsG0880042592.01.T01:intron 15.0%
!!! GAAATATACATTGATAATAA+GGG + Chr8:11102598-11102617 MsG0880042592.01.T01:intron 15.0%
!!! TGAAATATACATTGATAATA+AGG + Chr8:11102597-11102616 MsG0880042592.01.T01:intron 15.0%
!!! TGTTTATTTTATTTTCTTGT+TGG - Chr8:11100980-11100999 None:intergenic 15.0%
!!! TTGTAATTAATAAGTGATTT+TGG - Chr8:11100226-11100245 None:intergenic 15.0%
!!! TTTCTTGTTTCATAAAATAT+AGG - Chr8:11102219-11102238 None:intergenic 15.0%
!! AAAATAAATCAACACTTCAT+TGG - Chr8:11101786-11101805 None:intergenic 20.0%
!! AATATGATTACATTATACCT+TGG + Chr8:11102406-11102425 MsG0880042592.01.T01:intron 20.0%
!! TAAAAAGAAGATTGAACAAT+TGG + Chr8:11102649-11102668 MsG0880042592.01.T01:intron 20.0%
!! TATGCAAAAATCAAATACAT+AGG - Chr8:11102575-11102594 None:intergenic 20.0%
!!! AAATTTTGTGGATTTTGTTA+TGG + Chr8:11101516-11101535 MsG0880042592.01.T01:intron 20.0%
!!! ACTTAGAACATGATTTTATT+AGG + Chr8:11102698-11102717 MsG0880042592.01.T01:intron 20.0%
!!! AGTGTAAAGTTATGATTTTT+GGG + Chr8:11100441-11100460 MsG0880042592.01.T01:intron 20.0%
!!! ATTTCCTTTTGTGAATAAAT+GGG + Chr8:11102885-11102904 MsG0880042592.01.T01:intron 20.0%
!!! GTATAAAGTTTTGTTTTTTG+AGG + Chr8:11100497-11100516 MsG0880042592.01.T01:intron 20.0%
!!! TCATCTTTTTGTTGAAAAAA+TGG + Chr8:11100408-11100427 MsG0880042592.01.T01:intron 20.0%
!!! TGGTAAATTTTAAATTCTTG+TGG + Chr8:11102285-11102304 MsG0880042592.01.T01:intron 20.0%
!!! TGTTCTAATGTAAAATTTTG+TGG + Chr8:11101504-11101523 MsG0880042592.01.T01:intron 20.0%
!!! TTATTTCTAATGCAATTGAT+CGG + Chr8:11100647-11100666 MsG0880042592.01.T01:CDS 20.0%
!!! TTTTATTGGATAATGTTGTT+TGG + Chr8:11100930-11100949 MsG0880042592.01.T01:intron 20.0%
!!! TTTTTTCAACAAAAAGATGA+AGG - Chr8:11100408-11100427 None:intergenic 20.0%
! AAAATTTCAGAAAACATCGT+CGG - Chr8:11102002-11102021 None:intergenic 25.0%
! AAACTACTAAGAACTAACAT+TGG - Chr8:11103393-11103412 None:intergenic 25.0%
! AACCCCTATATAGATATATT+TGG - Chr8:11101602-11101621 None:intergenic 25.0%
! AAGAATTCAAATACTCTTCA+TGG - Chr8:11102468-11102487 None:intergenic 25.0%
! ACAATACTTGCATGAAAATA+CGG - Chr8:11103200-11103219 None:intergenic 25.0%
! ACCCCTATATAGATATATTT+GGG - Chr8:11101601-11101620 None:intergenic 25.0%
! ATCATTGAGTTAATTGTCAT+GGG + Chr8:11102775-11102794 MsG0880042592.01.T01:intron 25.0%
! CTAGTCAATATGAAATATTC+CGG + Chr8:11102861-11102880 MsG0880042592.01.T01:intron 25.0%
! TCCCCAAATATATCTATATA+GGG + Chr8:11101596-11101615 MsG0880042592.01.T01:intron 25.0%
! TGCTTTACATTTCTATTACA+AGG + Chr8:11101952-11101971 MsG0880042592.01.T01:intron 25.0%
! TTACATATTATTGCAGTAGA+CGG - Chr8:11103270-11103289 None:intergenic 25.0%
!! AGTTGAAGGGAAAATTTTAT+TGG + Chr8:11100916-11100935 MsG0880042592.01.T01:intron 25.0%
!! ATAAAATTTTCCCTTCAACT+TGG - Chr8:11100916-11100935 None:intergenic 25.0%
!! CAATGATTTTATTCCCAAAA+AGG + Chr8:11102104-11102123 MsG0880042592.01.T01:CDS 25.0%
!! CATTTCCTTTTGTGAATAAA+TGG + Chr8:11102884-11102903 MsG0880042592.01.T01:intron 25.0%
!! GAGTGTAAAGTTATGATTTT+TGG + Chr8:11100440-11100459 MsG0880042592.01.T01:intron 25.0%
!! TAAAATTTTCCCTTCAACTT+GGG - Chr8:11100915-11100934 None:intergenic 25.0%
!! TGATTGATTTACTAAGTTTG+AGG + Chr8:11103333-11103352 MsG0880042592.01.T01:three_prime_UTR 25.0%
!! TTTCATATTGACTAGAAAGT+AGG - Chr8:11102856-11102875 None:intergenic 25.0%
!! TTTTATCATGAAGTGAACTA+AGG - Chr8:11103130-11103149 None:intergenic 25.0%
!!! AAAAAATGGGTGTTTTTTGT+TGG + Chr8:11100474-11100493 MsG0880042592.01.T01:intron 25.0%
!!! AAAAATGGGTGTTTTTTGTT+GGG + Chr8:11100475-11100494 MsG0880042592.01.T01:intron 25.0%
!!! AACACAGTTTTGTTTTTTCT+TGG - Chr8:11102963-11102982 None:intergenic 25.0%
!!! GTTCTTAGTAGTTTTATTAG+AGG + Chr8:11103399-11103418 MsG0880042592.01.T01:three_prime_UTR 25.0%
!!! TAAAGTTTTGTTTTTTGAGG+TGG + Chr8:11100500-11100519 MsG0880042592.01.T01:intron 25.0%
AAATTTCAGAAAACATCGTC+GGG - Chr8:11102001-11102020 None:intergenic 30.0%
AACTTCATCAAATTCAAGCT+GGG + Chr8:11100844-11100863 MsG0880042592.01.T01:intron 30.0%
AATGCAATTGATCGGTTAAA+TGG + Chr8:11100655-11100674 MsG0880042592.01.T01:CDS 30.0%
ACAATTAACTCAATGATGAG+GGG - Chr8:11102772-11102791 None:intergenic 30.0%
ACATTAGAGAGAGAAAAAGT+TGG + Chr8:11101065-11101084 MsG0880042592.01.T01:intron 30.0%
ACTTCCCATTTATTCACAAA+AGG - Chr8:11102892-11102911 None:intergenic 30.0%
AGAACCTATAGTAGAAAAGA+TGG + Chr8:11101091-11101110 MsG0880042592.01.T01:intron 30.0%
ATATAGATATATTTGGGGAC+AGG - Chr8:11101595-11101614 None:intergenic 30.0%
ATGACTATGCAAGATCAAAT+AGG + Chr8:11102336-11102355 MsG0880042592.01.T01:intron 30.0%
ATGATAAAACTAGGTGGAAT+AGG + Chr8:11103141-11103160 MsG0880042592.01.T01:three_prime_UTR 30.0%
ATTACATTATACCTTGGATC+GGG + Chr8:11102412-11102431 MsG0880042592.01.T01:intron 30.0%
ATTAGAGAGAGAAAAAGTTG+GGG + Chr8:11101067-11101086 MsG0880042592.01.T01:intron 30.0%
CAAGACTGCTTAATGATATA+GGG + Chr8:11103308-11103327 MsG0880042592.01.T01:three_prime_UTR 30.0%
CATCATTGAGTTAATTGTCA+TGG + Chr8:11102774-11102793 MsG0880042592.01.T01:intron 30.0%
CATGAGTTGTAATGTTTGTT+TGG + Chr8:11100554-11100573 MsG0880042592.01.T01:intron 30.0%
CATTAGAGAGAGAAAAAGTT+GGG + Chr8:11101066-11101085 MsG0880042592.01.T01:intron 30.0%
CCCCAAATATATCTATATAG+GGG + Chr8:11101597-11101616 MsG0880042592.01.T01:intron 30.0%
CCCCTATATAGATATATTTG+GGG - Chr8:11101600-11101619 None:intergenic 30.0%
CTGATATTACTGATATCCAA+TGG - Chr8:11101703-11101722 None:intergenic 30.0%
GAATAAAAAGAGGCTTAGTT+TGG + Chr8:11101421-11101440 MsG0880042592.01.T01:intron 30.0%
GAATTGAACTAACACTACAA+TGG - Chr8:11101449-11101468 None:intergenic 30.0%
GACAATTAACTCAATGATGA+GGG - Chr8:11102773-11102792 None:intergenic 30.0%
GATTACATTATACCTTGGAT+CGG + Chr8:11102411-11102430 MsG0880042592.01.T01:intron 30.0%
GGGTGTTTGATGAAAAAAAT+GGG + Chr8:11100461-11100480 MsG0880042592.01.T01:intron 30.0%
GTCCCCAAATATATCTATAT+AGG + Chr8:11101595-11101614 MsG0880042592.01.T01:intron 30.0%
GTTCACTTCATGATAAAACT+AGG + Chr8:11103132-11103151 MsG0880042592.01.T01:three_prime_UTR 30.0%
TATTACTGATATCCAATGGT+TGG - Chr8:11101699-11101718 None:intergenic 30.0%
TATTTAGCAAATCCAACCAT+TGG + Chr8:11101684-11101703 MsG0880042592.01.T01:intron 30.0%
TCAACAGATAGCAGAAAAAA+GGG - Chr8:11101375-11101394 None:intergenic 30.0%
TGACAATTAACTCAATGATG+AGG - Chr8:11102774-11102793 None:intergenic 30.0%
TGACTATGCAAGATCAAATA+GGG + Chr8:11102337-11102356 MsG0880042592.01.T01:intron 30.0%
TGGGTGTTTGATGAAAAAAA+TGG + Chr8:11100460-11100479 MsG0880042592.01.T01:intron 30.0%
TTACTTCAGTGACTGAAAAT+TGG - Chr8:11101757-11101776 None:intergenic 30.0%
TTATTCACAAAAGGAAATGC+CGG - Chr8:11102883-11102902 None:intergenic 30.0%
TTCAACAGATAGCAGAAAAA+AGG - Chr8:11101376-11101395 None:intergenic 30.0%
TTGGATATCAGTAATATCAG+TGG + Chr8:11101703-11101722 MsG0880042592.01.T01:intron 30.0%
! AAATAAACATAGTGGAGATG+AGG + Chr8:11100991-11101010 MsG0880042592.01.T01:intron 30.0%
! ACATGATTTTATTAGGCTCT+AGG + Chr8:11102705-11102724 MsG0880042592.01.T01:intron 30.0%
! TAAGTTTGAGGTAGATAGAA+TGG + Chr8:11103345-11103364 MsG0880042592.01.T01:three_prime_UTR 30.0%
! TTGTTGTGATTTGTGTTGTT+CGG + Chr8:11100712-11100731 MsG0880042592.01.T01:intron 30.0%
! TTTCATGCAAGTATTGTGTA+TGG + Chr8:11103203-11103222 MsG0880042592.01.T01:three_prime_UTR 30.0%
!! AAATGGAAACTAGTCTTAGT+TGG + Chr8:11101117-11101136 MsG0880042592.01.T01:intron 30.0%
!! GGATTTTGTTATGGAAATCA+TGG + Chr8:11101525-11101544 MsG0880042592.01.T01:intron 30.0%
!! TAGGTTGAAATGTCCTTTTT+GGG - Chr8:11102120-11102139 None:intergenic 30.0%
!!! AAAATTTTGGAGCTTGGATA+TGG - Chr8:11100275-11100294 None:intergenic 30.0%
!!! CTGTACAGAGATTTTTTTCT+TGG + Chr8:11102521-11102540 MsG0880042592.01.T01:intron 30.0%
AACAGCTTTCCTTATCAATC+TGG - Chr8:11101488-11101507 None:intergenic 35.0%
AACGCCAAAAAGACAACAAA+CGG - Chr8:11103246-11103265 None:intergenic 35.0%
ACACAAGTAGAAGATAAGGA+AGG - Chr8:11102257-11102276 None:intergenic 35.0%
ACCTATAGTAGAAAAGATGG+TGG + Chr8:11101094-11101113 MsG0880042592.01.T01:intron 35.0%
ACTATGCAAGATCAAATAGG+GGG + Chr8:11102339-11102358 MsG0880042592.01.T01:intron 35.0%
ATAGGACTAAATGAGACATC+AGG - Chr8:11102201-11102220 None:intergenic 35.0%
CAACTTCATCAAATTCAAGC+TGG + Chr8:11100843-11100862 MsG0880042592.01.T01:intron 35.0%
CACTTCATGATAAAACTAGG+TGG + Chr8:11103135-11103154 MsG0880042592.01.T01:three_prime_UTR 35.0%
CCAAGACTGCTTAATGATAT+AGG + Chr8:11103307-11103326 MsG0880042592.01.T01:three_prime_UTR 35.0%
CCTATATCATTAAGCAGTCT+TGG - Chr8:11103310-11103329 None:intergenic 35.0%
CTAAGAACTAACATTGGACA+TGG - Chr8:11103387-11103406 None:intergenic 35.0%
GAACACACAAGTAGAAGATA+AGG - Chr8:11102261-11102280 None:intergenic 35.0%
GACTATGCAAGATCAAATAG+GGG + Chr8:11102338-11102357 MsG0880042592.01.T01:intron 35.0%
GATATGGATGGGAAAAGATA+AGG - Chr8:11100259-11100278 None:intergenic 35.0%
TAGGACTAAATGAGACATCA+GGG - Chr8:11102200-11102219 None:intergenic 35.0%
TATCATGAAGTGAACTAAGG+TGG - Chr8:11103127-11103146 None:intergenic 35.0%
TCAAACCGCTGAATAAAAAG+AGG + Chr8:11101411-11101430 MsG0880042592.01.T01:intron 35.0%
TGAACCCACTTATTGGAATA+AGG + Chr8:11101291-11101310 MsG0880042592.01.T01:intron 35.0%
TTACATTATACCTTGGATCG+GGG + Chr8:11102413-11102432 MsG0880042592.01.T01:intron 35.0%
! AGTCGTCTTGAGGAAAATTT+TGG - Chr8:11100288-11100307 None:intergenic 35.0%
! CTAAGCCTCTTTTTATTCAG+CGG - Chr8:11101419-11101438 None:intergenic 35.0%
! GCAAGTATTGTGTATGGATA+TGG + Chr8:11103209-11103228 MsG0880042592.01.T01:three_prime_UTR 35.0%
! TCAAAATCGCTTCTGAGAAA+TGG + Chr8:11100166-11100185 MsG0880042592.01.T01:CDS 35.0%
! TCCACCATCTTTTCTACTAT+AGG - Chr8:11101098-11101117 None:intergenic 35.0%
! TCTAAGTATGACACTTTTCC+TGG - Chr8:11102685-11102704 None:intergenic 35.0%
! TGTTGTTTGGAAAAGAGTGT+TGG + Chr8:11100943-11100962 MsG0880042592.01.T01:intron 35.0%
!! AGTAGAAAAGATGGTGGAAA+TGG + Chr8:11101100-11101119 MsG0880042592.01.T01:intron 35.0%
!! CAAGCCTTATTCCAATAAGT+GGG - Chr8:11101298-11101317 None:intergenic 35.0%
!! CTAGGTTGAAATGTCCTTTT+TGG - Chr8:11102121-11102140 None:intergenic 35.0%
!! GAAACTAGTCTTAGTTGGTT+TGG + Chr8:11101122-11101141 MsG0880042592.01.T01:intron 35.0%
!! GCAGAGTAAGTTTTGTAGTT+TGG + Chr8:11101866-11101885 MsG0880042592.01.T01:intron 35.0%
!! GTTGTTTGGAAAAGAGTGTT+GGG + Chr8:11100944-11100963 MsG0880042592.01.T01:intron 35.0%
!! TTAAATGGTGGATTGATGGA+TGG + Chr8:11100670-11100689 MsG0880042592.01.T01:CDS 35.0%
!!! ACATTATCCTTTTTCAACGG+TGG - Chr8:11103436-11103455 None:intergenic 35.0%
!!! GATTCCGTTTGTTGTCTTTT+TGG + Chr8:11103239-11103258 MsG0880042592.01.T01:three_prime_UTR 35.0%
!!! GGCACATTATCCTTTTTCAA+CGG - Chr8:11103439-11103458 None:intergenic 35.0%
!!! GTGGTATGACATTTTTTTGC+TGG + Chr8:11101722-11101741 MsG0880042592.01.T01:intron 35.0%
!!! GTTTTTTCTTTTGCTTGAGC+AGG + Chr8:11102996-11103015 MsG0880042592.01.T01:intron 35.0%
!!! TTGAGGAAAATTTTGGAGCT+TGG - Chr8:11100281-11100300 None:intergenic 35.0%
!!! TTGTTCACTGTTGTTTTGCA+GGG + Chr8:11102062-11102081 MsG0880042592.01.T01:intron 35.0%
!!! TTTGTTCACTGTTGTTTTGC+AGG + Chr8:11102061-11102080 MsG0880042592.01.T01:intron 35.0%
AAATTCTGCTGCCTCTAGTT+TGG + Chr8:11101549-11101568 MsG0880042592.01.T01:intron 40.0%
AACGTTTCCACCGTTGAAAA+AGG + Chr8:11103426-11103445 MsG0880042592.01.T01:three_prime_UTR 40.0%
AAGAAGCTTCTTTGCTCTGA+TGG + Chr8:11100319-11100338 MsG0880042592.01.T01:CDS 40.0%
AAGGAGAGTAGATCAGATAG+AGG + Chr8:11101178-11101197 MsG0880042592.01.T01:intron 40.0%
ACTTACTCTAGGCATACGTT+TGG + Chr8:11101623-11101642 MsG0880042592.01.T01:intron 40.0%
AGAAGCTTCTTTGCTCTGAT+GGG + Chr8:11100320-11100339 MsG0880042592.01.T01:CDS 40.0%
AGAGTAGATCAGATAGAGGA+TGG + Chr8:11101182-11101201 MsG0880042592.01.T01:intron 40.0%
AGATAGCAATTTGAGCGCAT+AGG - Chr8:11101923-11101942 None:intergenic 40.0%
AGGTGGAATAGGACAAAACA+GGG + Chr8:11103152-11103171 MsG0880042592.01.T01:three_prime_UTR 40.0%
ATGTAGCTGAACCCACTTAT+TGG + Chr8:11101284-11101303 MsG0880042592.01.T01:intron 40.0%
CATTCAACGCCAGATTGATA+AGG + Chr8:11101476-11101495 MsG0880042592.01.T01:intron 40.0%
CATTTCAACCTAGCACTATC+CGG + Chr8:11102128-11102147 MsG0880042592.01.T01:CDS 40.0%
CCACTTATTGGAATAAGGCT+TGG + Chr8:11101296-11101315 MsG0880042592.01.T01:intron 40.0%
CTTATCCCACTAAGTAGGAT+CGG + Chr8:11102821-11102840 MsG0880042592.01.T01:intron 40.0%
GAATCTGCACGTAAGCAATA+TGG - Chr8:11102929-11102948 None:intergenic 40.0%
GATGGGAAAAGATAAGGTTG+AGG - Chr8:11100253-11100272 None:intergenic 40.0%
GCAATTGATCGGTTAAATGG+TGG + Chr8:11100658-11100677 MsG0880042592.01.T01:CDS 40.0%
GCCTACTTTCTACAACAACA+AGG + Chr8:11102797-11102816 MsG0880042592.01.T01:intron 40.0%
GTAAGAAGAAGCGAAGAGAA+GGG - Chr8:11100366-11100385 None:intergenic 40.0%
TAAGGGCTTCTAGCATAATC+TGG + Chr8:11102615-11102634 MsG0880042592.01.T01:intron 40.0%
TAGGTGGAATAGGACAAAAC+AGG + Chr8:11103151-11103170 MsG0880042592.01.T01:three_prime_UTR 40.0%
TATAGGGGTTCACTTACTCT+AGG + Chr8:11101612-11101631 MsG0880042592.01.T01:intron 40.0%
TCAGTGACTGAAAATTGGTG+TGG - Chr8:11101752-11101771 None:intergenic 40.0%
TCTCTGTACAGCTCAAACAT+AGG - Chr8:11102512-11102531 None:intergenic 40.0%
TTCATCAAATTCAAGCTGGG+TGG + Chr8:11100847-11100866 MsG0880042592.01.T01:intron 40.0%
TTCTACTTGTGTGTTCGTGT+TGG + Chr8:11102265-11102284 MsG0880042592.01.T01:intron 40.0%
! AACTTACCACCCAAGTTGAA+GGG + Chr8:11100903-11100922 MsG0880042592.01.T01:intron 40.0%
! AATAAGTGGGTTCAGCTACA+TGG - Chr8:11101285-11101304 None:intergenic 40.0%
! AATTCTGCTGCCTCTAGTTT+GGG + Chr8:11101550-11101569 MsG0880042592.01.T01:intron 40.0%
! AATTTTCCCTTCAACTTGGG+TGG - Chr8:11100912-11100931 None:intergenic 40.0%
! AGGTAGAAATCGAGCATTGT+AGG - Chr8:11101903-11101922 None:intergenic 40.0%
! TAACTTACCACCCAAGTTGA+AGG + Chr8:11100902-11100921 MsG0880042592.01.T01:intron 40.0%
! TTTCTTTTGCTTGAGCAGGA+AGG + Chr8:11103000-11103019 MsG0880042592.01.T01:intron 40.0%
! TTTGGAGCTTGGATATGGAT+GGG - Chr8:11100270-11100289 None:intergenic 40.0%
!! AAGGACAGAGAAAGTACCAT+CGG - Chr8:11100389-11100408 None:intergenic 40.0%
!! CCAAGCCTTATTCCAATAAG+TGG - Chr8:11101299-11101318 None:intergenic 40.0%
!! GCCTTGTTGTTGTAGAAAGT+AGG - Chr8:11102801-11102820 None:intergenic 40.0%
!! GCTTAGTTCATTGACTTCAG+AGG + Chr8:11103085-11103104 MsG0880042592.01.T01:exon 40.0%
!! GGCATATACAGAGGTTTTGA+AGG + Chr8:11102360-11102379 MsG0880042592.01.T01:intron 40.0%
!! TCGGTTAAATGGTGGATTGA+TGG + Chr8:11100666-11100685 MsG0880042592.01.T01:CDS 40.0%
!!! GGAATCATGGGTTTTTTGCT+CGG + Chr8:11102158-11102177 MsG0880042592.01.T01:CDS 40.0%
!!! TACAGAGGTTTTGAAGGAGA+TGG + Chr8:11102366-11102385 MsG0880042592.01.T01:intron 40.0%
!!! TGTTCACTGTTGTTTTGCAG+GGG + Chr8:11102063-11102082 MsG0880042592.01.T01:intron 40.0%
!!! TTTTGGAGCTTGGATATGGA+TGG - Chr8:11100271-11100290 None:intergenic 40.0%
AATTGCTCGAAGAGTAGCGA+AGG + Chr8:11103045-11103064 MsG0880042592.01.T01:CDS 45.0%
ACAATTGGCAGATTACGACC+AGG + Chr8:11102664-11102683 MsG0880042592.01.T01:intron 45.0%
ATGTAGCCGATCCTACTTAG+TGG - Chr8:11102830-11102849 None:intergenic 45.0%
ATTGCTCGAAGAGTAGCGAA+GGG + Chr8:11103046-11103065 MsG0880042592.01.T01:CDS 45.0%
CAAGCAGAAACCCAAACTAG+AGG - Chr8:11101563-11101582 None:intergenic 45.0%
CGATCCTACTTAGTGGGATA+AGG - Chr8:11102823-11102842 None:intergenic 45.0%
GACTAAATGAGACATCAGGG+TGG - Chr8:11102197-11102216 None:intergenic 45.0%
GGTAAGAAGAAGCGAAGAGA+AGG - Chr8:11100367-11100386 None:intergenic 45.0%
TGTAGCCGATCCTACTTAGT+GGG - Chr8:11102829-11102848 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + Chr8:11100856-11100875 MsG0880042592.01.T01:intron 45.0%
! AAGGCCTTATCCCACTAAGT+AGG + Chr8:11102816-11102835 MsG0880042592.01.T01:intron 45.0%
! ACTGATTCAGAGTCGTCTTG+AGG - Chr8:11100298-11100317 None:intergenic 45.0%
! CAAATAGGGGGCATATACAG+AGG + Chr8:11102351-11102370 MsG0880042592.01.T01:intron 45.0%
!! AGGACAGAGAAAGTACCATC+GGG - Chr8:11100388-11100407 None:intergenic 45.0%
!! CTAGTCTTAGCACACATCCA+AGG - Chr8:11101023-11101042 None:intergenic 45.0%
!! GTTTGGAAAAGAGTGTTGGG+CGG + Chr8:11100947-11100966 MsG0880042592.01.T01:intron 45.0%
AGAAGAAGCGAAGAGAAGGG+AGG - Chr8:11100363-11100382 None:intergenic 50.0%
ATCATCTATGCCCCGATCCA+AGG - Chr8:11102426-11102445 None:intergenic 50.0%
CTCCTTGCTGCAGAATCTAC+AGG - Chr8:11101164-11101183 None:intergenic 50.0%
CTTCGCTTCTTCTTACCCGA+TGG + Chr8:11100370-11100389 MsG0880042592.01.T01:CDS 50.0%
GACCTGTAGATTCTGCAGCA+AGG + Chr8:11101159-11101178 MsG0880042592.01.T01:intron 50.0%
GGTCAGATCACTAGAGACGT+AGG + Chr8:11101203-11101222 MsG0880042592.01.T01:intron 50.0%
TTCAACCTAGCACTATCCGG+CGG + Chr8:11102131-11102150 MsG0880042592.01.T01:CDS 50.0%
! GATGGGTTTCTCTACCCTTG+TGG + Chr8:11100337-11100356 MsG0880042592.01.T01:CDS 50.0%
AATTACCCTTCTGCCACCCC+TGG - Chr8:11103029-11103048 None:intergenic 55.0%
ACCCATGATTCCTCTTCCGC+CGG - Chr8:11102150-11102169 None:intergenic 55.0%
ATCCGGCGGAAGAGGAATCA+TGG + Chr8:11102145-11102164 MsG0880042592.01.T01:CDS 55.0%
CTCGAAGAGTAGCGAAGGGT+CGG + Chr8:11103050-11103069 MsG0880042592.01.T01:CDS 55.0%
CTTGAGCAGGAAGGCAACCA+GGG + Chr8:11103009-11103028 MsG0880042592.01.T01:intron 55.0%
GAAGAGAAGGGAGGCCACAA+GGG - Chr8:11100354-11100373 None:intergenic 55.0%
TCCGGCGGAAGAGGAATCAT+GGG + Chr8:11102146-11102165 MsG0880042592.01.T01:CDS 55.0%
TGGAGATGAGGATGCTGCCT+TGG + Chr8:11101003-11101022 MsG0880042592.01.T01:intron 55.0%
TTGAGCAGGAAGGCAACCAG+GGG + Chr8:11103010-11103029 MsG0880042592.01.T01:intron 55.0%
! GAGTAGCGAAGGGTCGGTTT+AGG + Chr8:11103056-11103075 MsG0880042592.01.T01:CDS 55.0%
CGAAGAGAAGGGAGGCCACA+AGG - Chr8:11100355-11100374 None:intergenic 60.0%
CTAGCACTATCCGGCGGAAG+AGG + Chr8:11102137-11102156 MsG0880042592.01.T01:CDS 60.0%
CTCTTCCGCCGGATAGTGCT+AGG - Chr8:11102139-11102158 None:intergenic 60.0%
GCTTGAGCAGGAAGGCAACC+AGG + Chr8:11103008-11103027 MsG0880042592.01.T01:intron 60.0%
AGCAGGAAGGCAACCAGGGG+TGG + Chr8:11103013-11103032 MsG0880042592.01.T01:intron 65.0%
AGGCAACCAGGGGTGGCAGA+AGG + Chr8:11103020-11103039 MsG0880042592.01.T01:CDS 65.0%
GGCAACCAGGGGTGGCAGAA+GGG + Chr8:11103021-11103040 MsG0880042592.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 11100160 11103461 11100160 ID=MsG0880042592.01;Name=MsG0880042592.01
Chr8 mRNA 11100160 11103461 11100160 ID=MsG0880042592.01.T01;Parent=MsG0880042592.01;Name=MsG0880042592.01.T01;_AED=0.38;_eAED=0.42;_QI=0|0.33|0.5|1|0|0|4|371|154
Chr8 exon 11100160 11100402 11100160 ID=MsG0880042592.01.T01:exon:4576;Parent=MsG0880042592.01.T01
Chr8 exon 11100640 11100691 11100640 ID=MsG0880042592.01.T01:exon:4577;Parent=MsG0880042592.01.T01
Chr8 exon 11102083 11102179 11102083 ID=MsG0880042592.01.T01:exon:4578;Parent=MsG0880042592.01.T01
Chr8 exon 11103018 11103461 11103018 ID=MsG0880042592.01.T01:exon:4579;Parent=MsG0880042592.01.T01
Chr8 CDS 11100160 11100402 11100160 ID=MsG0880042592.01.T01:cds;Parent=MsG0880042592.01.T01
Chr8 CDS 11100640 11100691 11100640 ID=MsG0880042592.01.T01:cds;Parent=MsG0880042592.01.T01
Chr8 CDS 11102083 11102179 11102083 ID=MsG0880042592.01.T01:cds;Parent=MsG0880042592.01.T01
Chr8 CDS 11103018 11103090 11103018 ID=MsG0880042592.01.T01:cds;Parent=MsG0880042592.01.T01
Chr8 three_prime_UTR 11103091 11103461 11103091 ID=MsG0880042592.01.T01:three_prime_utr;Parent=MsG0880042592.01.T01
Gene Sequence

>MsG0880042592.01.T01

ATGGCTTCAAAATCGCTTCTGAGAAATGGTGCTGCATTGTTGAATCGATTATCACTATCAAATCCAAAATCACTTATTAATTACAATAATCCTCAACCTTATCTTTTCCCATCCATATCCAAGCTCCAAAATTTTCCTCAAGACGACTCTGAATCAGTGAAGAAGCTTCTTTGCTCTGATGGGTTTCTCTACCCTTGTGGCCTCCCTTCTCTTCGCTTCTTCTTACCCGATGGTACTTTCTCTTTGAAGTTTATTTCTAATGCAATTGATCGGTTAAATGGTGGATTGATGGATGGGGATTCTTCATCAGATGAAGCAATGATTTTATTCCCAAAAAGGACATTTCAACCTAGCACTATCCGGCGGAAGAGGAATCATGGGTTTTTTGCTCGGAAGGCAACCAGGGGTGGCAGAAGGGTAATTGCTCGAAGAGTAGCGAAGGGTCGGTTTAGGATCACAGCTTAG
Protein sequence

>MsG0880042592.01.T01

MASKSLLRNGAALLNRLSLSNPKSLINYNNPQPYLFPSISKLQNFPQDDSESVKKLLCSDGFLYPCGLPSLRFFLPDGTFSLKFISNAIDRLNGGLMDGDSSSDEAMILFPKRTFQPSTIRRKRNHGFFARKATRGGRRVIARRVAKGRFRITA*