AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042778.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042778.01.T01 MTR_8g022050 97.992 249 5 0 1 249 1 249 0.0 512
MsG0880042778.01.T01 MTR_4g124940 77.489 231 50 2 22 251 6 235 1.19e-131 378
MsG0880042778.01.T01 MTR_3g109090 74.661 221 50 3 34 249 13 232 8.06e-122 353
MsG0880042778.01.T01 MTR_3g109090 74.661 221 50 3 34 249 29 248 2.17e-121 353
MsG0880042778.01.T01 MTR_3g065190 33.163 196 115 5 63 249 26 214 4.39e-29 113
MsG0880042778.01.T01 MTR_3g101370 34.104 173 104 5 62 224 93 265 2.75e-25 101
MsG0880042778.01.T01 MTR_3g101370 34.104 173 104 5 62 224 93 265 1.53e-24 101
MsG0880042778.01.T01 MTR_2g097960 34.104 173 105 5 61 224 14 186 2.31e-24 100
MsG0880042778.01.T01 MTR_4g086600 32.597 181 108 5 58 224 112 292 2.34e-24 101
MsG0880042778.01.T01 MTR_1g020080 32.558 172 107 5 62 224 97 268 3.84e-24 98.6
MsG0880042778.01.T01 MTR_1g020080 32.558 172 107 5 62 224 97 268 2.33e-23 98.2
MsG0880042778.01.T01 MTR_1g020080 26.943 193 115 4 55 227 183 369 3.03e-15 75.1
MsG0880042778.01.T01 MTR_2g022950 33.143 175 106 5 61 224 59 233 2.87e-23 95.5
MsG0880042778.01.T01 MTR_2g022950 32.955 176 107 5 61 225 59 234 1.77e-22 95.5
MsG0880042778.01.T01 MTR_2g022950 26.374 182 107 4 63 223 156 331 8.05e-13 67.8
MsG0880042778.01.T01 MTR_2g022950 33.143 175 106 5 62 225 60 234 2.04e-22 93.6
MsG0880042778.01.T01 MTR_4g131970 30.085 236 152 6 14 236 22 257 1.95e-21 92.4
MsG0880042778.01.T01 MTR_3g102040 28.415 183 118 4 60 238 22 195 1.84e-18 84.7
MsG0880042778.01.T01 MTR_6g040190 28.144 167 114 3 63 225 26 190 6.34e-18 83.2
MsG0880042778.01.T01 MTR_6g040190 24.176 182 118 4 63 225 201 381 9.92e-12 64.7
MsG0880042778.01.T01 MTR_3g027140 28.729 181 115 2 57 223 55 235 8.93e-17 77.4
MsG0880042778.01.T01 MTR_4g085540 30.000 160 106 3 63 218 35 192 1.26e-16 79.3
MsG0880042778.01.T01 MTR_4g085540 29.609 179 115 4 57 225 113 290 2.29e-15 75.5
MsG0880042778.01.T01 MTR_4g085540 25.134 187 121 4 57 225 208 393 3.11e-13 69.3
MsG0880042778.01.T01 MTR_1g097440 29.651 172 110 4 57 218 109 279 1.62e-16 79.0
MsG0880042778.01.T01 MTR_1g097440 27.326 172 113 5 58 222 26 192 6.54e-13 68.2
MsG0880042778.01.T01 MTR_3g075500 29.609 179 114 2 57 223 104 282 5.32e-16 76.3
MsG0880042778.01.T01 MTR_7g102730 26.857 175 111 5 52 218 3 168 7.44e-16 77.0
MsG0880042778.01.T01 MTR_7g102730 25.414 181 116 3 63 225 190 369 1.34e-12 67.4
MsG0880042778.01.T01 MTR_4g104470 29.944 177 113 3 57 223 117 292 1.30e-15 75.1
MsG0880042778.01.T01 MTR_1g019150 26.374 182 127 4 42 218 11 190 3.29e-15 75.1
MsG0880042778.01.T01 MTR_1g019150 27.374 179 119 4 57 225 111 288 1.98e-13 69.7
MsG0880042778.01.T01 MTR_1g019150 25.824 182 115 4 63 225 212 392 4.18e-13 68.9
MsG0880042778.01.T01 MTR_6g040070 30.387 181 108 6 57 220 6 185 8.44e-15 73.9
MsG0880042778.01.T01 MTR_6g040070 27.429 175 107 5 63 218 106 279 2.16e-13 69.7
MsG0880042778.01.T01 MTR_4g109540 42.857 77 44 0 149 225 44 120 2.02e-14 71.2
MsG0880042778.01.T01 MTR_1g080150 35.484 93 57 1 147 236 132 224 3.32e-14 70.5
MsG0880042778.01.T01 MTR_3g084040 45.333 75 40 1 149 223 38 111 5.23e-14 67.8
MsG0880042778.01.T01 MTR_7g013730 39.241 79 48 0 149 227 42 120 5.45e-14 70.1
MsG0880042778.01.T01 MTR_1g064230 27.363 201 117 3 50 223 74 272 7.69e-14 69.7
MsG0880042778.01.T01 MTR_3g080130 39.024 82 50 0 149 230 38 119 2.22e-13 65.9
MsG0880042778.01.T01 MTR_3g075500 28.743 167 107 2 57 211 104 270 2.33e-13 68.6
MsG0880042778.01.T01 MTR_1g045510 25.904 166 117 2 64 223 115 280 1.03e-12 66.6
MsG0880042778.01.T01 MTR_4g109540 40.741 81 48 0 145 225 48 128 1.21e-12 66.2
MsG0880042778.01.T01 MTR_1g061870 25.610 164 116 3 59 218 12 173 1.62e-12 67.0
MsG0880042778.01.T01 MTR_1g061870 27.811 169 115 4 63 225 104 271 9.96e-12 64.7
MsG0880042778.01.T01 MTR_7g013740 38.667 75 46 0 149 223 42 116 1.87e-12 63.5
MsG0880042778.01.T01 MTR_8g092550 28.230 209 125 8 51 240 190 392 3.31e-12 66.2
MsG0880042778.01.T01 MTR_1g056520 24.719 178 120 3 61 224 107 284 3.89e-12 65.5
MsG0880042778.01.T01 MTR_7g105260 37.662 77 48 0 147 223 32 108 4.79e-12 62.4
MsG0880042778.01.T01 MTR_3g025880 38.961 77 47 0 149 225 46 122 1.33e-11 64.3
MsG0880042778.01.T01 MTR_7g106440 25.281 178 115 3 64 223 111 288 1.37e-11 63.9
MsG0880042778.01.T01 MTR_8g107310 42.857 77 44 0 148 224 212 288 1.74e-11 63.2
MsG0880042778.01.T01 MTR_4g088010 25.743 202 134 7 27 224 50 239 1.77e-11 63.5
MsG0880042778.01.T01 MTR_3g084040 48.276 58 30 0 149 206 38 95 1.87e-11 59.7
MsG0880042778.01.T01 MTR_4g122650 31.847 157 96 5 64 212 90 243 2.99e-11 63.5
MsG0880042778.01.T01 MTR_4g070080 38.462 78 48 0 146 223 5 82 6.36e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042778.01.T01 AT1G17370 88.532 218 25 0 32 249 24 241 6.05e-148 420
MsG0880042778.01.T01 AT1G17370 88.889 216 24 0 32 247 24 239 1.28e-147 419
MsG0880042778.01.T01 AT1G17370 24.631 203 115 5 57 225 134 332 1.85e-12 66.6
MsG0880042778.01.T01 AT3G14100 78.715 249 50 1 1 249 1 246 1.42e-140 401
MsG0880042778.01.T01 AT1G54080 77.200 250 56 1 1 249 1 250 5.57e-140 400
MsG0880042778.01.T01 AT1G54080 75.984 254 56 2 1 249 1 254 1.06e-137 394
MsG0880042778.01.T01 AT2G18510 34.694 196 112 5 63 249 26 214 6.18e-30 115
MsG0880042778.01.T01 AT5G19350 34.302 172 105 4 61 224 23 194 5.33e-26 105
MsG0880042778.01.T01 AT5G19350 34.302 172 105 4 61 224 23 194 5.70e-26 105
MsG0880042778.01.T01 AT3G19130 31.000 200 128 5 61 250 107 306 1.15e-25 104
MsG0880042778.01.T01 AT1G11650 29.545 220 135 6 33 241 42 252 1.15e-24 100
MsG0880042778.01.T01 AT4G27000 33.728 169 103 5 61 220 79 247 1.58e-24 101
MsG0880042778.01.T01 AT1G11650 29.412 221 136 6 33 242 42 253 3.40e-24 100
MsG0880042778.01.T01 AT1G49600 32.184 174 108 5 61 224 118 291 5.61e-24 100
MsG0880042778.01.T01 AT1G49600 26.316 190 105 5 63 223 214 397 7.89e-12 65.1
MsG0880042778.01.T01 AT1G49600 30.000 200 130 5 61 250 118 317 6.16e-24 100
MsG0880042778.01.T01 AT1G49600 26.316 190 105 5 63 223 214 397 1.91e-11 63.9
MsG0880042778.01.T01 AT1G49600 30.000 200 130 5 61 250 118 317 6.16e-24 100
MsG0880042778.01.T01 AT1G49600 26.316 190 105 5 63 223 214 397 1.91e-11 63.9
MsG0880042778.01.T01 AT5G54900 33.721 172 104 5 59 220 57 228 1.11e-23 98.6
MsG0880042778.01.T01 AT1G47490 32.571 175 106 6 62 224 101 275 1.54e-21 91.7
MsG0880042778.01.T01 AT1G47490 32.571 175 106 6 62 224 101 275 6.35e-21 91.3
MsG0880042778.01.T01 AT1G47500 31.429 175 108 6 62 224 103 277 9.02e-20 87.0
MsG0880042778.01.T01 AT1G47500 31.429 175 108 6 62 224 103 277 1.57e-19 87.4
MsG0880042778.01.T01 AT3G16380 32.143 168 108 3 63 225 113 279 1.13e-18 85.1
MsG0880042778.01.T01 AT3G16380 29.012 162 107 3 63 218 22 181 5.75e-13 68.6
MsG0880042778.01.T01 AT4G24770 30.682 176 113 2 57 223 145 320 3.89e-18 82.4
MsG0880042778.01.T01 AT4G24770 30.682 176 113 2 57 223 145 320 3.89e-18 82.4
MsG0880042778.01.T01 AT1G22760 30.818 159 105 3 63 218 50 206 6.59e-18 83.2
MsG0880042778.01.T01 AT1G22760 25.414 181 116 3 63 225 230 409 1.65e-13 70.1
MsG0880042778.01.T01 AT1G22760 29.255 188 120 4 57 232 127 313 2.69e-13 69.7
MsG0880042778.01.T01 AT3G52150 32.275 189 110 5 53 223 65 253 8.19e-18 80.5
MsG0880042778.01.T01 AT3G52150 32.275 189 110 5 53 223 65 253 8.19e-18 80.5
MsG0880042778.01.T01 AT2G37220 29.787 188 104 2 64 223 93 280 9.60e-18 80.9
MsG0880042778.01.T01 AT2G23350 33.728 169 105 3 63 225 135 302 1.76e-17 82.0
MsG0880042778.01.T01 AT2G23350 31.250 160 104 3 63 218 47 204 5.01e-15 74.7
MsG0880042778.01.T01 AT2G23350 25.967 181 115 4 63 225 226 405 3.94e-13 68.9
MsG0880042778.01.T01 AT4G34110 31.481 162 101 4 63 218 37 194 3.89e-17 80.9
MsG0880042778.01.T01 AT4G34110 29.609 179 115 4 57 225 115 292 2.82e-16 78.2
MsG0880042778.01.T01 AT4G34110 25.414 181 116 3 63 225 216 395 2.93e-13 69.3
MsG0880042778.01.T01 AT2G36660 33.537 164 95 5 63 218 25 182 4.78e-17 80.5
MsG0880042778.01.T01 AT1G71770 26.203 187 129 4 63 246 60 240 4.98e-17 80.5
MsG0880042778.01.T01 AT1G71770 31.383 188 116 5 57 232 137 323 1.58e-15 76.3
MsG0880042778.01.T01 AT1G71770 25.263 190 119 4 63 234 240 424 2.07e-14 72.8
MsG0880042778.01.T01 AT1G71770 26.203 187 129 4 63 246 60 240 4.98e-17 80.5
MsG0880042778.01.T01 AT1G71770 31.383 188 116 5 57 232 137 323 1.58e-15 76.3
MsG0880042778.01.T01 AT1G71770 25.263 190 119 4 63 234 240 424 2.07e-14 72.8
MsG0880042778.01.T01 AT5G50250 30.726 179 114 3 55 223 105 283 3.97e-16 76.6
MsG0880042778.01.T01 AT1G49760 29.808 208 127 6 57 250 124 326 4.29e-16 77.8
MsG0880042778.01.T01 AT1G49760 30.000 160 106 3 63 218 46 203 4.71e-15 74.7
MsG0880042778.01.T01 AT1G49760 27.072 181 113 3 63 225 225 404 2.08e-14 72.8
MsG0880042778.01.T01 AT1G49760 29.808 208 127 6 57 250 124 326 4.29e-16 77.8
MsG0880042778.01.T01 AT1G49760 30.000 160 106 3 63 218 46 203 4.71e-15 74.7
MsG0880042778.01.T01 AT1G49760 27.072 181 113 3 63 225 225 404 2.08e-14 72.8
MsG0880042778.01.T01 AT3G23830 46.753 77 41 0 149 225 37 113 1.08e-15 72.0
MsG0880042778.01.T01 AT3G23830 46.753 77 41 0 149 225 37 113 1.08e-15 72.0
MsG0880042778.01.T01 AT4G13860 41.176 85 48 1 149 233 5 87 3.24e-15 69.3
MsG0880042778.01.T01 AT1G60000 30.000 180 104 5 50 223 90 253 1.03e-14 72.0
MsG0880042778.01.T01 AT4G13850 44.737 76 42 0 149 224 37 112 2.47e-14 68.2
MsG0880042778.01.T01 AT3G52380 27.222 180 113 4 64 225 118 297 3.10e-14 71.6
MsG0880042778.01.T01 AT4G13850 44.737 76 42 0 149 224 37 112 3.17e-14 68.6
MsG0880042778.01.T01 AT4G13850 44.737 76 42 0 149 224 37 112 3.86e-14 68.6
MsG0880042778.01.T01 AT4G13850 44.737 76 42 0 149 224 37 112 4.30e-14 68.6
MsG0880042778.01.T01 AT1G34140 28.415 183 123 3 57 232 22 203 1.01e-13 70.5
MsG0880042778.01.T01 AT3G04500 33.684 95 60 1 147 238 137 231 1.36e-13 68.9
MsG0880042778.01.T01 AT5G61030 41.333 75 44 0 149 223 42 116 7.79e-13 67.4
MsG0880042778.01.T01 AT5G61030 41.333 75 44 0 149 223 42 116 7.79e-13 67.4
MsG0880042778.01.T01 AT4G39260 38.824 85 51 1 146 229 5 89 8.24e-13 63.2
MsG0880042778.01.T01 AT5G04280 43.421 76 43 0 148 223 8 83 1.09e-12 67.0
MsG0880042778.01.T01 AT1G74230 44.156 77 42 1 149 225 36 111 2.12e-12 65.9
MsG0880042778.01.T01 AT3G53460 45.333 75 41 0 149 223 259 333 2.97e-12 65.9
MsG0880042778.01.T01 AT3G53460 45.333 75 41 0 149 223 259 333 2.97e-12 65.9
MsG0880042778.01.T01 AT3G53460 45.333 75 41 0 149 223 259 333 2.97e-12 65.9
MsG0880042778.01.T01 AT3G53460 45.333 75 41 0 149 223 280 354 4.08e-12 65.5
MsG0880042778.01.T01 AT2G33410 28.902 173 96 5 64 211 8 178 6.51e-12 65.1
MsG0880042778.01.T01 AT3G08000 38.462 78 48 0 148 225 42 119 8.59e-12 61.6
MsG0880042778.01.T01 AT4G14300 28.977 176 92 6 64 211 8 178 1.25e-11 64.3
MsG0880042778.01.T01 AT4G14300 28.977 176 92 6 64 211 8 178 1.25e-11 64.3
MsG0880042778.01.T01 AT5G47320 41.333 75 44 0 149 223 33 107 1.30e-11 62.8
MsG0880042778.01.T01 AT4G39260 38.462 78 48 0 146 223 5 82 3.05e-11 59.7
MsG0880042778.01.T01 AT1G60650 38.372 86 53 0 149 234 14 99 4.03e-11 62.4
MsG0880042778.01.T01 AT1G60650 38.372 86 53 0 149 234 14 99 4.03e-11 62.4
MsG0880042778.01.T01 AT2G21660 38.158 76 47 0 146 221 7 82 6.99e-11 59.7
MsG0880042778.01.T01 AT4G39260 38.462 78 48 0 146 223 5 82 7.13e-11 59.7
MsG0880042778.01.T01 AT2G21660 38.158 76 47 0 146 221 7 82 9.42e-11 59.7

Find 72 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAACCTATCAAAGTTAAC+TGG 0.303964 8:+13943312 MsG0880042778.01.T01:CDS
CCTTCCATTGAGAGTTAATA+TGG 0.304042 8:-13943207 None:intergenic
ACTGGGCGATCAAGGGGATT+TGG 0.334423 8:+13943772 MsG0880042778.01.T01:CDS
AAAAGCTTACACCCTTCAAC+TGG 0.359205 8:-13943020 None:intergenic
TATGCCCAGTTAACTTTGAT+AGG 0.370081 8:-13943317 None:intergenic
CACACACTGCGGCAAGTACT+TGG 0.374575 8:-13942595 None:intergenic
GTAGACAAATACGCTGCAAC+TGG 0.382099 8:+13944271 MsG0880042778.01.T01:CDS
GTCTGTGCCTTTCAGGTAAG+TGG 0.392351 8:+13944241 MsG0880042778.01.T01:intron
GCGGGTACTGGCCCAGTTGA+AGG 0.395293 8:+13943008 MsG0880042778.01.T01:CDS
GGAAATTATTAGGGTTCAAA+GGG 0.397473 8:-13940416 None:intergenic
GGCCATTACAACATATTTGT+TGG 0.405771 8:+13943457 MsG0880042778.01.T01:intron
GGCAAATTTCCACTTGGGAT+TGG 0.418426 8:-13942559 None:intergenic
GAGGAGTCTCTTTCTGTAAG+AGG 0.424281 8:+13940377 MsG0880042778.01.T01:five_prime_UTR
TGCCTTTCAGGTAAGTGGCT+TGG 0.427719 8:+13944246 MsG0880042778.01.T01:intron
CGATCGCAGATCTGCTGCTC+TGG 0.428701 8:+13943184 MsG0880042778.01.T01:CDS
GAACTAACAAATGGTTCATC+TGG 0.429816 8:+13944354 MsG0880042778.01.T01:CDS
ATCAGAAGACTGGGCGATCA+AGG 0.435048 8:+13943764 MsG0880042778.01.T01:CDS
CCAAGTGGAAATTTGCCTCC+TGG 0.436571 8:+13942565 MsG0880042778.01.T01:CDS
CGCTGCAACTGGGCAACAAA+AGG 0.437840 8:+13944282 MsG0880042778.01.T01:CDS
TGGAAATTATTAGGGTTCAA+AGG 0.454765 8:-13940417 None:intergenic
AGCTGAAAATGCAGAATCAT+AGG 0.471928 8:+13940473 MsG0880042778.01.T01:exon
CTGGCCATATTAACTCTCAA+TGG 0.478563 8:+13943203 MsG0880042778.01.T01:CDS
GTTATGTGGGATCAGAAGAC+TGG 0.486448 8:+13943754 MsG0880042778.01.T01:CDS
GTGGCTCGGTTACTTGTGTA+TGG 0.493557 8:-13942968 None:intergenic
ATGAAGCTTACGAACAACTT+TGG 0.494255 8:-13943534 None:intergenic
AACTTCTTGCAGAAGTGGCT+CGG 0.499016 8:-13942982 None:intergenic
GGTCAGAGAGAGGATACATC+AGG 0.501078 8:+13943347 MsG0880042778.01.T01:CDS
AACTGGGCAACAAAAGGTGC+TGG 0.502538 8:+13944288 MsG0880042778.01.T01:CDS
CCAGGAGGCAAATTTCCACT+TGG 0.505891 8:-13942565 None:intergenic
CACCAACAAATATGTTGTAA+TGG 0.507913 8:-13943459 None:intergenic
CGGGTACTGGCCCAGTTGAA+GGG 0.510220 8:+13943009 MsG0880042778.01.T01:CDS
TGTTTCATTCCGTAGCCAGC+AGG 0.516705 8:+13943798 MsG0880042778.01.T01:CDS
TAGAGATGCAAGAGTTATGT+GGG 0.520268 8:+13943741 MsG0880042778.01.T01:intron
TTAGAGATGCAAGAGTTATG+TGG 0.526961 8:+13943740 MsG0880042778.01.T01:intron
TCAGAAGACTGGGCGATCAA+GGG 0.527570 8:+13943765 MsG0880042778.01.T01:CDS
TGTAAGAGGGTCACTGCGTA+GGG 0.532228 8:+13940391 MsG0880042778.01.T01:five_prime_UTR
CAGGAGGCAAATTTCCACTT+GGG 0.537949 8:-13942564 None:intergenic
TGGTCTCTTAGCTCCACCTC+AGG 0.539491 8:+13940588 MsG0880042778.01.T01:CDS
CTGTAAGAGGGTCACTGCGT+AGG 0.547670 8:+13940390 MsG0880042778.01.T01:five_prime_UTR
AGTGTGGTGGAACTAACAAA+TGG 0.554047 8:+13944345 MsG0880042778.01.T01:CDS
TGTATCCTCTCTCTGACCAC+TGG 0.563870 8:-13943342 None:intergenic
TGTTGGTGACCTCAGTCCTG+AGG 0.574357 8:+13943474 MsG0880042778.01.T01:CDS
TGTGAGAAAATGCAGGTATG+TGG 0.574705 8:+13942938 MsG0880042778.01.T01:intron
CAGAAGACTGGGCGATCAAG+GGG 0.575925 8:+13943766 MsG0880042778.01.T01:CDS
GAATAGGGACCAACCTGAGG+TGG 0.581351 8:-13940601 None:intergenic
CCATATTAACTCTCAATGGA+AGG 0.584606 8:+13943207 MsG0880042778.01.T01:CDS
TGAGGTGGAGCTAAGAGACC+AGG 0.584784 8:-13940586 None:intergenic
AGTGCTATAAATGATTTGAC+CGG 0.585401 8:+13943916 MsG0880042778.01.T01:CDS
GCATGCGAAAAGTGTAGCAT+CGG 0.586459 8:-13943500 None:intergenic
AGTGTAGCATCGGTAACCTC+AGG 0.587772 8:-13943490 None:intergenic
AGGAGTCTCTTTCTGTAAGA+GGG 0.588380 8:+13940378 MsG0880042778.01.T01:five_prime_UTR
CAAGTACTTGGATCAAAACC+AGG 0.592915 8:-13942583 None:intergenic
CAGATTGAACCAATCCCAAG+TGG 0.614650 8:+13942550 MsG0880042778.01.T01:intron
TAGACAAATACGCTGCAACT+GGG 0.625372 8:+13944272 MsG0880042778.01.T01:CDS
GCAACCTATCAAAGTTAACT+GGG 0.627335 8:+13943313 MsG0880042778.01.T01:CDS
TTTCCAGTGAAAATTTCACT+AGG 0.629878 8:+13940434 MsG0880042778.01.T01:five_prime_UTR
TTATGTGGGATCAGAAGACT+GGG 0.632262 8:+13943755 MsG0880042778.01.T01:CDS
CTCGGACAGTAAAAGTGTGG+TGG 0.632747 8:+13944332 MsG0880042778.01.T01:CDS
TATTGAAGAGAAGCAAAACT+CGG 0.637066 8:+13944314 MsG0880042778.01.T01:CDS
AAAGCTTACACCCTTCAACT+GGG 0.638369 8:-13943019 None:intergenic
GTGAGAAAATGCAGGTATGT+GGG 0.639135 8:+13942939 MsG0880042778.01.T01:intron
ATATGCCAGTGGTCAGAGAG+AGG 0.645760 8:+13943337 MsG0880042778.01.T01:CDS
TGGGCAACAAAAGGTGCTGG+CGG 0.665006 8:+13944291 MsG0880042778.01.T01:CDS
CAACAATCTCTCTATCACCC+TGG 0.672833 8:+13940568 MsG0880042778.01.T01:CDS
AAACTCGGACAGTAAAAGTG+TGG 0.685436 8:+13944329 MsG0880042778.01.T01:CDS
CTCCTCTGAGAAAATACCAG+AGG 0.686802 8:-13940360 None:intergenic
CATCGGTAACCTCAGGACTG+AGG 0.688396 8:-13943483 None:intergenic
GAGGTGGAGCTAAGAGACCA+GGG 0.691045 8:-13940585 None:intergenic
GAAATTATTAGGGTTCAAAG+GGG 0.698823 8:-13940415 None:intergenic
GTTAACTGGGCATATGCCAG+TGG 0.699312 8:+13943326 MsG0880042778.01.T01:CDS
TAGACAAAACTCACACACTG+CGG 0.742849 8:-13942606 None:intergenic
GTACTTGGATCAAAACCAGG+AGG 0.749205 8:-13942580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTTAATAAGAAAATT+GGG + Chr8:13940755-13940774 MsG0880042778.01.T01:intron 10.0%
!!! AAAAAAATTGAATTTTATAG+TGG + Chr8:13940940-13940959 MsG0880042778.01.T01:intron 10.0%
!!! AAAAAATTGAATTTTATAGT+GGG + Chr8:13940941-13940960 MsG0880042778.01.T01:intron 10.0%
!!! AAAAAATTGAATTTTTTTAG+TGG + Chr8:13940817-13940836 MsG0880042778.01.T01:intron 10.0%
!!! AAAAATTGAATTTTTTTAGT+GGG + Chr8:13940818-13940837 MsG0880042778.01.T01:intron 10.0%
!!! AAAATTGATTTTTTATTTAG+TGG + Chr8:13940859-13940878 MsG0880042778.01.T01:intron 10.0%
!!! AAATTGATTTTTTATTTAGT+GGG + Chr8:13940860-13940879 MsG0880042778.01.T01:intron 10.0%
!!! CTTTTAAAATAATTAAACAT+AGG - Chr8:13944103-13944122 None:intergenic 10.0%
!! AATAACATTTAGATTCATAA+AGG - Chr8:13941805-13941824 None:intergenic 15.0%
!! AATCATAAAACAAAAGAAAA+GGG - Chr8:13942670-13942689 None:intergenic 15.0%
!! AATCTTCATTTATTCAAAAT+GGG + Chr8:13943613-13943632 MsG0880042778.01.T01:intron 15.0%
!! ATAACATTTAGATTCATAAA+GGG - Chr8:13941804-13941823 None:intergenic 15.0%
!! CTTCAATTTAATAAGAAAAT+TGG + Chr8:13940754-13940773 MsG0880042778.01.T01:intron 15.0%
!! TAATTGGCTAAAATAAAATA+AGG - Chr8:13943968-13943987 None:intergenic 15.0%
!! TATGCTGAAAAAAAATATAT+AGG - Chr8:13944143-13944162 None:intergenic 15.0%
!! TCAATTTAATAAGAAAATTG+GGG + Chr8:13940756-13940775 MsG0880042778.01.T01:intron 15.0%
!! TTAACTCATACAAAAAATAA+TGG - Chr8:13941018-13941037 None:intergenic 15.0%
!! TTGATTATAAAATTGTTCAT+GGG - Chr8:13942173-13942192 None:intergenic 15.0%
!!! AAAATCTTAATTTGTGTTTT+GGG + Chr8:13943835-13943854 MsG0880042778.01.T01:intron 15.0%
!!! ATTATTTTTTGTATGAGTTA+AGG + Chr8:13941017-13941036 MsG0880042778.01.T01:intron 15.0%
!!! TAAAATCTTAATTTGTGTTT+TGG + Chr8:13943834-13943853 MsG0880042778.01.T01:intron 15.0%
!!! TATATTTTTTGTCATTTTGT+AGG + Chr8:13943885-13943904 MsG0880042778.01.T01:intron 15.0%
!!! TATTTTAGCCAATTATAATT+TGG + Chr8:13943973-13943992 MsG0880042778.01.T01:intron 15.0%
!!! TATTTTTACTAAGAAATCAT+AGG - Chr8:13943563-13943582 None:intergenic 15.0%
!!! TGATGAAAAAAATTGAATTT+TGG + Chr8:13940974-13940993 MsG0880042778.01.T01:intron 15.0%
!!! TTTGCATTTTTTGTTTATTA+GGG + Chr8:13940676-13940695 MsG0880042778.01.T01:intron 15.0%
!! AAAATAGTTCAGTACTTTAA+AGG - Chr8:13941714-13941733 None:intergenic 20.0%
!! AAGAAAAGATGAAAAGAAAA+AGG - Chr8:13942497-13942516 None:intergenic 20.0%
!! AAGGTAAAAAAGAAGAAAAA+AGG - Chr8:13942521-13942540 None:intergenic 20.0%
!! ACAAATATTCAATCTTGATT+TGG + Chr8:13942469-13942488 MsG0880042778.01.T01:intron 20.0%
!! AGAAAAGATGAAAAGAAAAA+GGG - Chr8:13942496-13942515 None:intergenic 20.0%
!! ATGAATCTAAATGTTATTAG+AGG + Chr8:13941807-13941826 MsG0880042778.01.T01:intron 20.0%
!! ATTTACTAACGAAAAATCAA+TGG - Chr8:13944007-13944026 None:intergenic 20.0%
!! CAATCATAAAACAAAAGAAA+AGG - Chr8:13942671-13942690 None:intergenic 20.0%
!! CAATCTTCATTTATTCAAAA+TGG + Chr8:13943612-13943631 MsG0880042778.01.T01:intron 20.0%
!! CCAATTCCAAATATATAAAA+TGG - Chr8:13943590-13943609 None:intergenic 20.0%
!! GATCAATAAGATTGAATAAA+AGG - Chr8:13942643-13942662 None:intergenic 20.0%
!! GTTGATTATAAAATTGTTCA+TGG - Chr8:13942174-13942193 None:intergenic 20.0%
!! TTATTCCATATATGTGATAA+TGG + Chr8:13943649-13943668 MsG0880042778.01.T01:intron 20.0%
!! TTGCAAGATATAATAAACTT+AGG - Chr8:13942784-13942803 None:intergenic 20.0%
!!! AAATCTTAATTTGTGTTTTG+GGG + Chr8:13943836-13943855 MsG0880042778.01.T01:intron 20.0%
!!! AATTTTCACTGGAAATTATT+AGG - Chr8:13940429-13940448 None:intergenic 20.0%
!!! AATTTTTTTTAGTGGGTATT+TGG + Chr8:13940907-13940926 MsG0880042778.01.T01:intron 20.0%
!!! AGACTTTTCCAAATTATAAT+TGG - Chr8:13943984-13944003 None:intergenic 20.0%
!!! ATATGTTTCTTTGAATTTTC+AGG + Chr8:13943436-13943455 MsG0880042778.01.T01:intron 20.0%
!!! ATGTTTTGAACAAATCATTT+TGG + Chr8:13943398-13943417 MsG0880042778.01.T01:intron 20.0%
!!! ATTTTCACTGGAAATTATTA+GGG - Chr8:13940428-13940447 None:intergenic 20.0%
!!! CATTTTCATTTTCTTCTATT+AGG + Chr8:13942327-13942346 MsG0880042778.01.T01:intron 20.0%
!!! CCATTTTATATATTTGGAAT+TGG + Chr8:13943587-13943606 MsG0880042778.01.T01:intron 20.0%
!!! CTTTGCATTTTTTGTTTATT+AGG + Chr8:13940675-13940694 MsG0880042778.01.T01:intron 20.0%
!!! TAGCATCCATTTTATATATT+TGG + Chr8:13943581-13943600 MsG0880042778.01.T01:intron 20.0%
!!! TCATACAAAAAATAATGGAA+TGG - Chr8:13941013-13941032 None:intergenic 20.0%
!!! TTAAGGTTGTTAATTTTTCT+GGG + Chr8:13941034-13941053 MsG0880042778.01.T01:intron 20.0%
!!! TTTTTTGTCTGTTATTGTTT+TGG + Chr8:13942375-13942394 MsG0880042778.01.T01:intron 20.0%
! AAAAACTAAACTACAACAGT+AGG - Chr8:13942269-13942288 None:intergenic 25.0%
! AAGAGAAGAAACAAACAATT+AGG - Chr8:13942891-13942910 None:intergenic 25.0%
! AATAAGAAAATTGGGGTAAT+GGG + Chr8:13940763-13940782 MsG0880042778.01.T01:intron 25.0%
! AGGAAAAACAAAAATCCTAT+GGG - Chr8:13942249-13942268 None:intergenic 25.0%
! AGTTCTTCTATAATTGTGTT+AGG + Chr8:13943243-13943262 MsG0880042778.01.T01:intron 25.0%
! ATAAGCTTGCAATTGATATA+TGG + Chr8:13941319-13941338 MsG0880042778.01.T01:intron 25.0%
! ATTTAGTAATATGATGTGGT+TGG + Chr8:13941229-13941248 MsG0880042778.01.T01:intron 25.0%
! CATCATATTACTAAATAGAC+TGG - Chr8:13941225-13941244 None:intergenic 25.0%
! GAAAAGATGAAAAGAAAAAG+GGG - Chr8:13942495-13942514 None:intergenic 25.0%
! GTCTATTTAGTAATATGATG+TGG + Chr8:13941225-13941244 MsG0880042778.01.T01:intron 25.0%
! TAATAAGAAAATTGGGGTAA+TGG + Chr8:13940762-13940781 MsG0880042778.01.T01:intron 25.0%
! TAGGAAAAACAAAAATCCTA+TGG - Chr8:13942250-13942269 None:intergenic 25.0%
! TATATATATGAAAGCTCACT+TGG + Chr8:13941160-13941179 MsG0880042778.01.T01:intron 25.0%
!! AATTCAATGGTTTGTAGATT+CGG + Chr8:13943290-13943309 MsG0880042778.01.T01:intron 25.0%
!! ATAATTGTGTTAGGTTAGTT+TGG + Chr8:13943252-13943271 MsG0880042778.01.T01:intron 25.0%
!! ATTATTTTCACTTATGATCG+AGG + Chr8:13944204-13944223 MsG0880042778.01.T01:intron 25.0%
!! CACTAACTTTATCTTTTTGA+TGG + Chr8:13943715-13943734 MsG0880042778.01.T01:intron 25.0%
!! GTTAAGGTTGTTAATTTTTC+TGG + Chr8:13941033-13941052 MsG0880042778.01.T01:intron 25.0%
!!! AATTTTTTTCCTTTTTGTGC+TGG + Chr8:13941287-13941306 MsG0880042778.01.T01:intron 25.0%
!!! ATTTTAGATAACTTGTCCTT+GGG + Chr8:13942068-13942087 MsG0880042778.01.T01:intron 25.0%
!!! ATTTTTTATTTAGTGGGTGT+TGG + Chr8:13940866-13940885 MsG0880042778.01.T01:intron 25.0%
!!! TAATGGGTTTGATTTTTAGT+GGG + Chr8:13940779-13940798 MsG0880042778.01.T01:intron 25.0%
!!! TATTTTAGATAACTTGTCCT+TGG + Chr8:13942067-13942086 MsG0880042778.01.T01:intron 25.0%
!!! TTTAGTTTGTATTCAAACTG+TGG + Chr8:13941467-13941486 MsG0880042778.01.T01:intron 25.0%
!!! TTTAGTTTGTGATCAATATG+TGG + Chr8:13941525-13941544 MsG0880042778.01.T01:intron 25.0%
!!! TTTAGTTTTTATTCGAACTG+TGG + Chr8:13942279-13942298 MsG0880042778.01.T01:intron 25.0%
!!! TTTTTGAGTGGAAAGTAAAA+GGG + Chr8:13942036-13942055 MsG0880042778.01.T01:intron 25.0%
!!! TTTTTTATTTAGTGGGTGTT+GGG + Chr8:13940867-13940886 MsG0880042778.01.T01:intron 25.0%
AAACCATATTCTCAGTTCAA+AGG + Chr8:13944036-13944055 MsG0880042778.01.T01:intron 30.0%
AACATTAACTAGAGTGAATG+GGG - Chr8:13942418-13942437 None:intergenic 30.0%
AACCCCATTAAGTCATATTA+GGG + Chr8:13941628-13941647 MsG0880042778.01.T01:intron 30.0%
AAGAAAACATAACTCCTATC+TGG - Chr8:13941437-13941456 None:intergenic 30.0%
AAGAAAATGAAAATGAGTCC+AGG - Chr8:13942322-13942341 None:intergenic 30.0%
AATATGTGGTATTGTTTCCT+TGG + Chr8:13941539-13941558 MsG0880042778.01.T01:intron 30.0%
AGAAAATGAAAATGAGTCCA+GGG - Chr8:13942321-13942340 None:intergenic 30.0%
AGTGCTATAAATGATTTGAC+CGG + Chr8:13943916-13943935 MsG0880042778.01.T01:CDS 30.0%
ATATGGTATTGTTTCCTTTG+AGG + Chr8:13941336-13941355 MsG0880042778.01.T01:intron 30.0%
ATGAGAGAGTGAAAATACAA+GGG + Chr8:13942005-13942024 MsG0880042778.01.T01:intron 30.0%
ATGCACCATTATCACATATA+TGG - Chr8:13943657-13943676 None:intergenic 30.0%
CAAGAAGTAACATACAGTAA+TGG - Chr8:13942835-13942854 None:intergenic 30.0%
CACCAACAAATATGTTGTAA+TGG - Chr8:13943462-13943481 None:intergenic 30.0%
GAAATGAATCTACATGGTTT+AGG + Chr8:13941574-13941593 MsG0880042778.01.T01:intron 30.0%
GAAATTATTAGGGTTCAAAG+GGG - Chr8:13940418-13940437 None:intergenic 30.0%
GAACATTAACTAGAGTGAAT+GGG - Chr8:13942419-13942438 None:intergenic 30.0%
GGAAATTATTAGGGTTCAAA+GGG - Chr8:13940419-13940438 None:intergenic 30.0%
TATAAAATTGTTCATGGGAC+AGG - Chr8:13942168-13942187 None:intergenic 30.0%
TATCAATACAGTATAGCATG+AGG - Chr8:13942441-13942460 None:intergenic 30.0%
TATGAGAGAGTGAAAATACA+AGG + Chr8:13942004-13942023 MsG0880042778.01.T01:intron 30.0%
TATTGAAGAGAAGCAAAACT+CGG + Chr8:13944314-13944333 MsG0880042778.01.T01:CDS 30.0%
TGCATACTAAACAACTTTGT+TGG + Chr8:13943677-13943696 MsG0880042778.01.T01:intron 30.0%
TGGAAATTATTAGGGTTCAA+AGG - Chr8:13940420-13940439 None:intergenic 30.0%
TTACACTCAGTTCAATTCAA+TGG + Chr8:13943277-13943296 MsG0880042778.01.T01:intron 30.0%
TTTCCAGTGAAAATTTCACT+AGG + Chr8:13940434-13940453 MsG0880042778.01.T01:five_prime_UTR 30.0%
! ATTCAATGGTTTGTAGATTC+GGG + Chr8:13943291-13943310 MsG0880042778.01.T01:intron 30.0%
! TTTCCCTTTTGCAAATCAAA+CGG - Chr8:13941655-13941674 None:intergenic 30.0%
! TTTTTATTCGAACTGTGGAT+GGG + Chr8:13942284-13942303 MsG0880042778.01.T01:intron 30.0%
!! GTTTGATTTGCAGAAAGTAA+GGG - Chr8:13942225-13942244 None:intergenic 30.0%
!! TAAGCTTTTTAGGAAAGAGA+AGG + Chr8:13943034-13943053 MsG0880042778.01.T01:CDS 30.0%
!! TGTTTGATTTGCAGAAAGTA+AGG - Chr8:13942226-13942245 None:intergenic 30.0%
!!! CTGAGAATATGGTTTTGTTT+CGG - Chr8:13944031-13944050 None:intergenic 30.0%
!!! GGTAAAGAAGCATTTTTTGT+AGG + Chr8:13941181-13941200 MsG0880042778.01.T01:intron 30.0%
!!! GTAATGGGTTTGATTTTTAG+TGG + Chr8:13940778-13940797 MsG0880042778.01.T01:intron 30.0%
!!! GTTTTTGAGTGGAAAGTAAA+AGG + Chr8:13942035-13942054 MsG0880042778.01.T01:intron 30.0%
!!! TGAATTTTATAGTGGGTAGT+TGG + Chr8:13940948-13940967 MsG0880042778.01.T01:intron 30.0%
!!! TGGAAAGTAAAAGGGTATTT+TGG + Chr8:13942044-13942063 MsG0880042778.01.T01:intron 30.0%
!!! TTTGATTTTTAGTGGGTGTT+TGG + Chr8:13940786-13940805 MsG0880042778.01.T01:intron 30.0%
!!! TTTTTCAGCATATTGACTTC+TGG + Chr8:13944151-13944170 MsG0880042778.01.T01:intron 30.0%
ACTCCTTTGAACTGAGAATA+TGG - Chr8:13944042-13944061 None:intergenic 35.0%
AGAAAGAGATTGTAGAGAGT+CGG + Chr8:13941830-13941849 MsG0880042778.01.T01:intron 35.0%
AGAGAAGATGATCGAAGAAA+TGG - Chr8:13940631-13940650 None:intergenic 35.0%
AGCTGAAAATGCAGAATCAT+AGG + Chr8:13940473-13940492 MsG0880042778.01.T01:exon 35.0%
AGTTGGGAAATGAATCTACA+TGG + Chr8:13941568-13941587 MsG0880042778.01.T01:intron 35.0%
ATGAAGCTTACGAACAACTT+TGG - Chr8:13943537-13943556 None:intergenic 35.0%
ATGGTTTAATGCAACAGAAC+TGG - Chr8:13942816-13942835 None:intergenic 35.0%
CATCAAAACTTCAGTTGTTC+TGG - Chr8:13942196-13942215 None:intergenic 35.0%
CATGACTTAGAGTTAATGTC+TGG + Chr8:13941380-13941399 MsG0880042778.01.T01:intron 35.0%
CCATATTAACTCTCAATGGA+AGG + Chr8:13943207-13943226 MsG0880042778.01.T01:CDS 35.0%
CCTTCCATTGAGAGTTAATA+TGG - Chr8:13943210-13943229 None:intergenic 35.0%
CGAAGAAATGGAGATGAATA+GGG - Chr8:13940619-13940638 None:intergenic 35.0%
CTTTATCTGTGAGAAAATGC+AGG + Chr8:13942931-13942950 MsG0880042778.01.T01:intron 35.0%
GAACCCCATTAAGTCATATT+AGG + Chr8:13941627-13941646 MsG0880042778.01.T01:intron 35.0%
GAACTAACAAATGGTTCATC+TGG + Chr8:13944354-13944373 MsG0880042778.01.T01:CDS 35.0%
GACATTAACTCTAAGTCATG+CGG - Chr8:13941380-13941399 None:intergenic 35.0%
GACCCTAATATGACTTAATG+GGG - Chr8:13941633-13941652 None:intergenic 35.0%
GCAACCTATCAAAGTTAACT+GGG + Chr8:13943313-13943332 MsG0880042778.01.T01:CDS 35.0%
GGAACATTAACTAGAGTGAA+TGG - Chr8:13942420-13942439 None:intergenic 35.0%
GGACCCTAATATGACTTAAT+GGG - Chr8:13941634-13941653 None:intergenic 35.0%
GGCCATTACAACATATTTGT+TGG + Chr8:13943457-13943476 MsG0880042778.01.T01:intron 35.0%
GTCAATGACAAGTTTCTTAC+CGG - Chr8:13943938-13943957 None:intergenic 35.0%
GTTCAATCTGCAAAACGAAA+AGG - Chr8:13942540-13942559 None:intergenic 35.0%
TAAGACAAAAATAGACCTGC+TGG - Chr8:13943816-13943835 None:intergenic 35.0%
TAGAGATGCAAGAGTTATGT+GGG + Chr8:13943741-13943760 MsG0880042778.01.T01:intron 35.0%
TATGATTGTGAGACAAGCTT+AGG + Chr8:13942683-13942702 MsG0880042778.01.T01:intron 35.0%
TATGCCCAGTTAACTTTGAT+AGG - Chr8:13943320-13943339 None:intergenic 35.0%
TCGAAGAAATGGAGATGAAT+AGG - Chr8:13940620-13940639 None:intergenic 35.0%
TTAGAGATGCAAGAGTTATG+TGG + Chr8:13943740-13943759 MsG0880042778.01.T01:intron 35.0%
! ACTATTTGTACCGTTTTGTC+CGG - Chr8:13941681-13941700 None:intergenic 35.0%
! ACTTCTGCAAGAAGTTTTTG+CGG + Chr8:13942989-13943008 MsG0880042778.01.T01:CDS 35.0%
! ATTTGCAAAAGGGAAAGTAC+CGG + Chr8:13941659-13941678 MsG0880042778.01.T01:intron 35.0%
! CATGAATCTGAACTTTTGTC+CGG + Chr8:13942122-13942141 MsG0880042778.01.T01:intron 35.0%
! CTTCCTAGTGAAATTTTCAC+TGG - Chr8:13940440-13940459 None:intergenic 35.0%
! GGGTTTTCATCAATTGAGTA+GGG + Chr8:13941054-13941073 MsG0880042778.01.T01:intron 35.0%
! GGTTTTCATCAATTGAGTAG+GGG + Chr8:13941055-13941074 MsG0880042778.01.T01:intron 35.0%
! GTTTTTATTCGAACTGTGGA+TGG + Chr8:13942283-13942302 MsG0880042778.01.T01:intron 35.0%
! TCTCTTTTGCAGTCATCTTA+TGG + Chr8:13943146-13943165 MsG0880042778.01.T01:intron 35.0%
! TGAATTTGACTTTGCCAGAT+AGG + Chr8:13941420-13941439 MsG0880042778.01.T01:intron 35.0%
! TGGGTTTTCATCAATTGAGT+AGG + Chr8:13941053-13941072 MsG0880042778.01.T01:intron 35.0%
! TGTGTGTTTGAAGTGTGAAA+TGG + Chr8:13941107-13941126 MsG0880042778.01.T01:intron 35.0%
!! AAACAACTTTGTTGGTGACT+TGG + Chr8:13943685-13943704 MsG0880042778.01.T01:intron 35.0%
!! GGTTGGTGTTAATGTAACTA+TGG + Chr8:13941246-13941265 MsG0880042778.01.T01:intron 35.0%
!! GTTTCCTTTGAGGTTTAGTT+GGG + Chr8:13941346-13941365 MsG0880042778.01.T01:intron 35.0%
!! TGTTTCCTTTGAGGTTTAGT+TGG + Chr8:13941345-13941364 MsG0880042778.01.T01:intron 35.0%
!! TTGAAGGGTGTAAGCTTTTT+AGG + Chr8:13943024-13943043 MsG0880042778.01.T01:CDS 35.0%
AAAAGCTTACACCCTTCAAC+TGG - Chr8:13943023-13943042 None:intergenic 40.0%
AAACTCGGACAGTAAAAGTG+TGG + Chr8:13944329-13944348 MsG0880042778.01.T01:CDS 40.0%
AAACTGTGGATGTGTTGTGT+TGG + Chr8:13941481-13941500 MsG0880042778.01.T01:intron 40.0%
AAAGCTTACACCCTTCAACT+GGG - Chr8:13943022-13943041 None:intergenic 40.0%
AACTGTGGATGTGTTGTGTT+GGG + Chr8:13941482-13941501 MsG0880042778.01.T01:intron 40.0%
AGAGAGACAGAGAGATAAAG+GGG + Chr8:13941943-13941962 MsG0880042778.01.T01:intron 40.0%
AGAGAGAGACAGAGAGATAA+AGG + Chr8:13941941-13941960 MsG0880042778.01.T01:intron 40.0%
AGGAGTCTCTTTCTGTAAGA+GGG + Chr8:13940378-13940397 MsG0880042778.01.T01:five_prime_UTR 40.0%
ATGTGGTATTGTTTCCTTGG+AGG + Chr8:13941542-13941561 MsG0880042778.01.T01:intron 40.0%
ATTTCCCAACTAAACCTCCA+AGG - Chr8:13941559-13941578 None:intergenic 40.0%
ATTTGCAGAAAGTAAGGGAC+TGG - Chr8:13942220-13942239 None:intergenic 40.0%
CAAGTACTTGGATCAAAACC+AGG - Chr8:13942586-13942605 None:intergenic 40.0%
CGGACCCTAATATGACTTAA+TGG - Chr8:13941635-13941654 None:intergenic 40.0%
CTGGCCATATTAACTCTCAA+TGG + Chr8:13943203-13943222 MsG0880042778.01.T01:CDS 40.0%
CTTTCCCAACTAAACCTCAA+AGG - Chr8:13941353-13941372 None:intergenic 40.0%
GAAAGAGATTGTAGAGAGTC+GGG + Chr8:13941831-13941850 MsG0880042778.01.T01:intron 40.0%
GAGAGAGACAGAGAGATAAA+GGG + Chr8:13941942-13941961 MsG0880042778.01.T01:intron 40.0%
GCAAAAACTTCTTGCAGAAG+TGG - Chr8:13942990-13943009 None:intergenic 40.0%
GCTACATAGTACAAAACCCT+AGG - Chr8:13940715-13940734 None:intergenic 40.0%
GGCAACCTATCAAAGTTAAC+TGG + Chr8:13943312-13943331 MsG0880042778.01.T01:CDS 40.0%
GTGAGAAAATGCAGGTATGT+GGG + Chr8:13942939-13942958 MsG0880042778.01.T01:intron 40.0%
GTTCAAAGGAGTTGCACATT+AGG + Chr8:13944050-13944069 MsG0880042778.01.T01:intron 40.0%
GTTTCCTTGGAGGTTTAGTT+GGG + Chr8:13941552-13941571 MsG0880042778.01.T01:intron 40.0%
TAGACAAAACTCACACACTG+CGG - Chr8:13942609-13942628 None:intergenic 40.0%
TAGACAAATACGCTGCAACT+GGG + Chr8:13944272-13944291 MsG0880042778.01.T01:CDS 40.0%
TCATGTCCTTCGCTAAACTA+CGG - Chr8:13942107-13942126 None:intergenic 40.0%
TCTGCAAATCAAACACCCAT+AGG + Chr8:13942231-13942250 MsG0880042778.01.T01:intron 40.0%
TGTGAGAAAATGCAGGTATG+TGG + Chr8:13942938-13942957 MsG0880042778.01.T01:intron 40.0%
TGTTTCCTTGGAGGTTTAGT+TGG + Chr8:13941551-13941570 MsG0880042778.01.T01:intron 40.0%
TTATGTGGGATCAGAAGACT+GGG + Chr8:13943755-13943774 MsG0880042778.01.T01:CDS 40.0%
TTCATGGGACAGGACAAAAT+GGG - Chr8:13942158-13942177 None:intergenic 40.0%
TTGTCCATCAAACATCGAAC+AGG - Chr8:13941741-13941760 None:intergenic 40.0%
TTGTCCTGTTCGATGTTTGA+TGG + Chr8:13941734-13941753 MsG0880042778.01.T01:intron 40.0%
! AAAAATAGACCTGCTGGCTA+CGG - Chr8:13943810-13943829 None:intergenic 40.0%
! AGTGTGGTGGAACTAACAAA+TGG + Chr8:13944345-13944364 MsG0880042778.01.T01:CDS 40.0%
! CTTCTGCAAGAAGTTTTTGC+GGG + Chr8:13942990-13943009 MsG0880042778.01.T01:CDS 40.0%
! GTTCGATGTTTGATGGACAA+TGG + Chr8:13941741-13941760 MsG0880042778.01.T01:intron 40.0%
!! AGGGAGAGAATGTTTTTGAG+TGG + Chr8:13942024-13942043 MsG0880042778.01.T01:intron 40.0%
!! CTTTGAGGTTTAGTTGGGAA+AGG + Chr8:13941351-13941370 MsG0880042778.01.T01:intron 40.0%
!! GGTCCGTTTGATTTGCAAAA+GGG + Chr8:13941649-13941668 MsG0880042778.01.T01:intron 40.0%
!! TTTCCTTTTTGTGCTGGCAT+TGG + Chr8:13941293-13941312 MsG0880042778.01.T01:intron 40.0%
!!! AGTGGGTATTTGGCTTTTGA+TGG + Chr8:13940917-13940936 MsG0880042778.01.T01:intron 40.0%
AACTTCTTGCAGAAGTGGCT+CGG - Chr8:13942985-13943004 None:intergenic 45.0%
ACACCAATGCCAGCACAAAA+AGG - Chr8:13941299-13941318 None:intergenic 45.0%
AGGGATTGCACTAAACACCT+AGG + Chr8:13940695-13940714 MsG0880042778.01.T01:intron 45.0%
ATAAAGGGGAGAGAGATAGG+AGG + Chr8:13941957-13941976 MsG0880042778.01.T01:intron 45.0%
CAACAATCTCTCTATCACCC+TGG + Chr8:13940568-13940587 MsG0880042778.01.T01:CDS 45.0%
CAGATTGAACCAATCCCAAG+TGG + Chr8:13942550-13942569 MsG0880042778.01.T01:intron 45.0%
CAGGAGGCAAATTTCCACTT+GGG - Chr8:13942567-13942586 None:intergenic 45.0%
CATGTCCTTCGCTAAACTAC+GGG - Chr8:13942106-13942125 None:intergenic 45.0%
GAGATAAAGGGGAGAGAGAT+AGG + Chr8:13941954-13941973 MsG0880042778.01.T01:intron 45.0%
GAGGAGTCTCTTTCTGTAAG+AGG + Chr8:13940377-13940396 MsG0880042778.01.T01:five_prime_UTR 45.0%
GGCAAATTTCCACTTGGGAT+TGG - Chr8:13942562-13942581 None:intergenic 45.0%
GGGATTGCACTAAACACCTA+GGG + Chr8:13940696-13940715 MsG0880042778.01.T01:intron 45.0%
GTACTTGGATCAAAACCAGG+AGG - Chr8:13942583-13942602 None:intergenic 45.0%
GTAGACAAATACGCTGCAAC+TGG + Chr8:13944271-13944290 MsG0880042778.01.T01:CDS 45.0%
GTTATGTGGGATCAGAAGAC+TGG + Chr8:13943754-13943773 MsG0880042778.01.T01:CDS 45.0%
GTTCATGGGACAGGACAAAA+TGG - Chr8:13942159-13942178 None:intergenic 45.0%
TAAAGGGGAGAGAGATAGGA+GGG + Chr8:13941958-13941977 MsG0880042778.01.T01:intron 45.0%
TCATGGGACAGGACAAAATG+GGG - Chr8:13942157-13942176 None:intergenic 45.0%
TTCCAAGCCACTTACCTGAA+AGG - Chr8:13944251-13944270 None:intergenic 45.0%
! CAAGAAGTTTTTGCGGGTAC+TGG + Chr8:13942996-13943015 MsG0880042778.01.T01:CDS 45.0%
! CTCCTCTGAGAAAATACCAG+AGG - Chr8:13940363-13940382 None:intergenic 45.0%
! GCATGCGAAAAGTGTAGCAT+CGG - Chr8:13943503-13943522 None:intergenic 45.0%
! GTCCTCTGGTATTTTCTCAG+AGG + Chr8:13940358-13940377 MsG0880042778.01.T01:five_prime_UTR 45.0%
!! ACTTTGTTGGTGACTTGGCA+TGG + Chr8:13943690-13943709 MsG0880042778.01.T01:intron 45.0%
!! AGGGAAAGTACCGGACAAAA+CGG + Chr8:13941668-13941687 MsG0880042778.01.T01:intron 45.0%
!! GGGTCCGTTTGATTTGCAAA+AGG + Chr8:13941648-13941667 MsG0880042778.01.T01:intron 45.0%
!! GGTTTTAGTGAAGAGTCCTC+TGG + Chr8:13940344-13940363 MsG0880042778.01.T01:five_prime_UTR 45.0%
!! TGGCTCTGAAATTGCGTTTG+AGG + Chr8:13941127-13941146 MsG0880042778.01.T01:intron 45.0%
!!! AAAAATTTAATTTTTTTTAG+TGG + Chr8:13940899-13940918 MsG0880042778.01.T01:intron 5.0%
!!! AAAATTTAATTTTTTTTAGT+GGG + Chr8:13940900-13940919 MsG0880042778.01.T01:intron 5.0%
ACAGGACAAAATGGGGAGCA+AGG - Chr8:13942150-13942169 None:intergenic 50.0%
ATATGCCAGTGGTCAGAGAG+AGG + Chr8:13943337-13943356 MsG0880042778.01.T01:CDS 50.0%
ATCAGAAGACTGGGCGATCA+AGG + Chr8:13943764-13943783 MsG0880042778.01.T01:CDS 50.0%
ATGTCCTGTCTGTGCCTTTC+AGG + Chr8:13944234-13944253 MsG0880042778.01.T01:intron 50.0%
CAGGACAAAATGGGGAGCAA+GGG - Chr8:13942149-13942168 None:intergenic 50.0%
CCAAGTGGAAATTTGCCTCC+TGG + Chr8:13942565-13942584 MsG0880042778.01.T01:CDS 50.0%
CCAGGAGGCAAATTTCCACT+TGG - Chr8:13942568-13942587 None:intergenic 50.0%
GAACTGTGGATGGGTGTGTT+GGG + Chr8:13942293-13942312 MsG0880042778.01.T01:intron 50.0%
GAGAACGAGAGACGTGAGAT+AGG + Chr8:13941880-13941899 MsG0880042778.01.T01:intron 50.0%
GATGAATAGGGACCAACCTG+AGG - Chr8:13940607-13940626 None:intergenic 50.0%
GGAGAGAGAGAGAGAGATAG+AGG + Chr8:13941852-13941871 MsG0880042778.01.T01:intron 50.0%
GGTCAGAGAGAGGATACATC+AGG + Chr8:13943347-13943366 MsG0880042778.01.T01:CDS 50.0%
GTTAACTGGGCATATGCCAG+TGG + Chr8:13943326-13943345 MsG0880042778.01.T01:CDS 50.0%
GTTGTCCCGTAGTTTAGCGA+AGG + Chr8:13942098-13942117 MsG0880042778.01.T01:intron 50.0%
TCAGAAGACTGGGCGATCAA+GGG + Chr8:13943765-13943784 MsG0880042778.01.T01:CDS 50.0%
TGTAAGAGGGTCACTGCGTA+GGG + Chr8:13940391-13940410 MsG0880042778.01.T01:five_prime_UTR 50.0%
TGTATCCTCTCTCTGACCAC+TGG - Chr8:13943345-13943364 None:intergenic 50.0%
TGTTTCATTCCGTAGCCAGC+AGG + Chr8:13943798-13943817 MsG0880042778.01.T01:CDS 50.0%
! AACTGGGCAACAAAAGGTGC+TGG + Chr8:13944288-13944307 MsG0880042778.01.T01:CDS 50.0%
! CGGGACAACTTTTTGTCCCA+AGG - Chr8:13942087-13942106 None:intergenic 50.0%
! CTCGGACAGTAAAAGTGTGG+TGG + Chr8:13944332-13944351 MsG0880042778.01.T01:CDS 50.0%
! CTTACCTGAAAGGCACAGAC+AGG - Chr8:13944241-13944260 None:intergenic 50.0%
! GTCTGTGCCTTTCAGGTAAG+TGG + Chr8:13944241-13944260 MsG0880042778.01.T01:intron 50.0%
! TGCCTTTCAGGTAAGTGGCT+TGG + Chr8:13944246-13944265 MsG0880042778.01.T01:intron 50.0%
!! AGTGTAGCATCGGTAACCTC+AGG - Chr8:13943493-13943512 None:intergenic 50.0%
!! GTGGCTCGGTTACTTGTGTA+TGG - Chr8:13942971-13942990 None:intergenic 50.0%
ACTGGGCGATCAAGGGGATT+TGG + Chr8:13943772-13943791 MsG0880042778.01.T01:CDS 55.0%
CAAAATGGGGAGCAAGGGAC+CGG - Chr8:13942144-13942163 None:intergenic 55.0%
CACACACTGCGGCAAGTACT+TGG - Chr8:13942598-13942617 None:intergenic 55.0%
CAGAAGACTGGGCGATCAAG+GGG + Chr8:13943766-13943785 MsG0880042778.01.T01:CDS 55.0%
CATCGGTAACCTCAGGACTG+AGG - Chr8:13943486-13943505 None:intergenic 55.0%
CGAACTGTGGATGGGTGTGT+TGG + Chr8:13942292-13942311 MsG0880042778.01.T01:intron 55.0%
CGCTGCAACTGGGCAACAAA+AGG + Chr8:13944282-13944301 MsG0880042778.01.T01:CDS 55.0%
CTCTTAGCTCCACCTCAGGT+TGG + Chr8:13940592-13940611 MsG0880042778.01.T01:intron 55.0%
CTGTAAGAGGGTCACTGCGT+AGG + Chr8:13940390-13940409 MsG0880042778.01.T01:five_prime_UTR 55.0%
GAATAGGGACCAACCTGAGG+TGG - Chr8:13940604-13940623 None:intergenic 55.0%
GAGAGATAGGAGGGAGAGAG+AGG + Chr8:13941967-13941986 MsG0880042778.01.T01:intron 55.0%
GAGGTGGAGCTAAGAGACCA+GGG - Chr8:13940588-13940607 None:intergenic 55.0%
GATAGGAGGGAGAGAGAGGA+AGG + Chr8:13941971-13941990 MsG0880042778.01.T01:intron 55.0%
TGAGGTGGAGCTAAGAGACC+AGG - Chr8:13940589-13940608 None:intergenic 55.0%
TGGTCTCTTAGCTCCACCTC+AGG + Chr8:13940588-13940607 MsG0880042778.01.T01:CDS 55.0%
!! TGGGCAACAAAAGGTGCTGG+CGG + Chr8:13944291-13944310 MsG0880042778.01.T01:CDS 55.0%
!! TGTTGGTGACCTCAGTCCTG+AGG + Chr8:13943474-13943493 MsG0880042778.01.T01:CDS 55.0%
CGATCGCAGATCTGCTGCTC+TGG + Chr8:13943184-13943203 MsG0880042778.01.T01:CDS 60.0%
!! CGGGTACTGGCCCAGTTGAA+GGG + Chr8:13943009-13943028 MsG0880042778.01.T01:CDS 60.0%
GATGGGTGTGTTGGGTGCCC+TGG + Chr8:13942301-13942320 MsG0880042778.01.T01:intron 65.0%
!! GCGGGTACTGGCCCAGTTGA+AGG + Chr8:13943008-13943027 MsG0880042778.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 13940339 13944383 13940339 ID=MsG0880042778.01;Name=MsG0880042778.01
Chr8 mRNA 13940339 13944383 13940339 ID=MsG0880042778.01.T01;Parent=MsG0880042778.01;Name=MsG0880042778.01.T01;_AED=0.50;_eAED=0.50;_QI=142|1|0.88|1|1|1|9|0|251
Chr8 exon 13940339 13940609 13940339 ID=MsG0880042778.01.T01:exon:13363;Parent=MsG0880042778.01.T01
Chr8 exon 13942553 13942614 13942553 ID=MsG0880042778.01.T01:exon:13364;Parent=MsG0880042778.01.T01
Chr8 exon 13942953 13943055 13942953 ID=MsG0880042778.01.T01:exon:13365;Parent=MsG0880042778.01.T01
Chr8 exon 13943158 13943234 13943158 ID=MsG0880042778.01.T01:exon:13366;Parent=MsG0880042778.01.T01
Chr8 exon 13943307 13943368 13943307 ID=MsG0880042778.01.T01:exon:13367;Parent=MsG0880042778.01.T01
Chr8 exon 13943458 13943545 13943458 ID=MsG0880042778.01.T01:exon:13368;Parent=MsG0880042778.01.T01
Chr8 exon 13943744 13943819 13943744 ID=MsG0880042778.01.T01:exon:13369;Parent=MsG0880042778.01.T01
Chr8 exon 13943907 13943937 13943907 ID=MsG0880042778.01.T01:exon:13370;Parent=MsG0880042778.01.T01
Chr8 exon 13944256 13944383 13944256 ID=MsG0880042778.01.T01:exon:13371;Parent=MsG0880042778.01.T01
Chr8 five_prime_UTR 13940339 13940480 13940339 ID=MsG0880042778.01.T01:five_prime_utr;Parent=MsG0880042778.01.T01
Chr8 CDS 13940481 13940609 13940481 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Chr8 CDS 13942553 13942614 13942553 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Chr8 CDS 13942953 13943055 13942953 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Chr8 CDS 13943158 13943234 13943158 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Chr8 CDS 13943307 13943368 13943307 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Chr8 CDS 13943458 13943545 13943458 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Chr8 CDS 13943744 13943819 13943744 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Chr8 CDS 13943907 13943937 13943907 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Chr8 CDS 13944256 13944383 13944256 ID=MsG0880042778.01.T01:cds;Parent=MsG0880042778.01.T01
Gene Sequence

>MsG0880042778.01.T01

ATGCAGAATCATAGGTTGAAGCAACAGCAACATCAGCAGCAGCAACAACAACAACAAGCTATGATGCAACAAGCTGCTCTTCTTCAACAACAATCTCTCTATCACCCTGGTCTCTTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATTTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGCAATGTCCATACACAAGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGGTGTAAGCTTTTTAGGAAAGAGAAGTCATCTTATGGATTCATTCATTACTTCGATCGCAGATCTGCTGCTCTGGCCATATTAACTCTCAATGGAAGGCATCTATTCGGGCAACCTATCAAAGTTAACTGGGCATATGCCAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACCGATGCTACACTTTTCGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGATCAAGGGGATTTGGATTTGTTTCATTCCGTAGCCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGCGGTATTGAAGAGAAGCAAAACTCGGACAGTAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGGTGAGTAA
Protein sequence

>MsG0880042778.01.T01

MQNHRLKQQQHQQQQQQQQAMMQQAALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSGE*