AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030622.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030622.01.T01 AT3G01410 47.664 107 56 0 44 150 5 111 1.40e-28 107
MsG0680030622.01.T01 AT3G01410 47.664 107 56 0 44 150 5 111 1.40e-28 107
MsG0680030622.01.T01 AT1G24090 45.614 114 53 1 43 156 76 180 1.69e-23 94.7
MsG0680030622.01.T01 AT5G51080 43.269 104 59 0 47 150 14 117 3.09e-19 82.0
MsG0680030622.01.T01 AT5G51080 43.269 104 59 0 47 150 77 180 9.06e-19 81.6
MsG0680030622.01.T01 AT5G51080 43.269 104 59 0 47 150 77 180 9.06e-19 81.6

Find 31 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATAACTGAGATTCATTTA+AGG 0.243703 6:-6195409 None:intergenic
AGATCACTGAGATTCATTTA+AGG 0.243703 6:-6195481 None:intergenic
ACTTGCTGTTTGTCCTTATC+AGG 0.263702 6:+6198651 MsG0680030622.01.T01:CDS
TTTCAGGATCCATGTTCTTC+AGG 0.275363 6:+6199296 MsG0680030622.01.T01:intron
GTAAAGAAAGGGAATGTTAT+TGG 0.292028 6:+6197280 MsG0680030622.01.T01:CDS
CATGTAAATGCGGGTAGTTT+TGG 0.319436 6:+6198625 MsG0680030622.01.T01:CDS
GATAACTGAGATTCATTTAA+GGG 0.354981 6:-6195408 None:intergenic
GATCACTGAGATTCATTTAA+GGG 0.359406 6:-6195480 None:intergenic
TCTTGTCTCACATGGACTTA+AGG 0.366869 6:+6198576 MsG0680030622.01.T01:CDS
CTTGTCTCACATGGACTTAA+GGG 0.382399 6:+6198577 MsG0680030622.01.T01:CDS
GCTTTCTATGTTGTAAAGAA+AGG 0.433125 6:+6197268 MsG0680030622.01.T01:CDS
AAAGTGTCTCAAACCTGATA+AGG 0.474134 6:-6198664 None:intergenic
TTCAGGAGGAGGAACTGTTA+TGG 0.477459 6:+6199313 MsG0680030622.01.T01:CDS
CTTTCTATGTTGTAAAGAAA+GGG 0.478602 6:+6197269 MsG0680030622.01.T01:CDS
GCGTATGGAGAAGTATTTGT+TGG 0.492994 6:+6195374 None:intergenic
CGTATGGAGAAGTATTTGTT+GGG 0.520638 6:+6195375 None:intergenic
ATCTTGCGATCTCTTTAATG+AGG 0.527010 6:-6199342 None:intergenic
AGCAGCACTGATAGAGTAAG+TGG 0.536190 6:-6198602 None:intergenic
CAGGATCCATGTTCTTCAGG+AGG 0.547487 6:+6199299 MsG0680030622.01.T01:intron
TTCTTTACCTCAAGAAACTG+AGG 0.573541 6:+6198549 MsG0680030622.01.T01:CDS
CATACAGAAGATGAAAGTAA+AGG 0.576695 6:-6197331 None:intergenic
ATCACTGAGATTCATTTAAG+GGG 0.580063 6:-6195479 None:intergenic
GATCCATGTTCTTCAGGAGG+AGG 0.580570 6:+6199302 MsG0680030622.01.T01:CDS
AGATACTCCTCAGTTTCTTG+AGG 0.586973 6:-6198556 None:intergenic
AGTGCTGCTCATGTAAATGC+GGG 0.591618 6:+6198616 MsG0680030622.01.T01:CDS
CAGTGCTGCTCATGTAAATG+CGG 0.597847 6:+6198615 MsG0680030622.01.T01:CDS
TCGAGAGATTAGTCTCTGCA+TGG 0.601580 6:+6195431 MsG0680030622.01.T01:CDS
ATAACTGAGATTCATTTAAG+GGG 0.604669 6:-6195407 None:intergenic
GTTCCTCCTCCTGAAGAACA+TGG 0.608819 6:-6199305 None:intergenic
TTAAAGTTGATAACTCACAC+TGG 0.661319 6:-6199381 None:intergenic
GAGGAGTATCTTGTCTCACA+TGG 0.666064 6:+6198568 MsG0680030622.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTAATTATAAAAATGT+TGG - Chr6:6195708-6195727 None:intergenic 10.0%
!! AAGAATTTAATTAATATACA+CGG - Chr6:6196401-6196420 None:intergenic 10.0%
!!! AATCTTTTTCTTTTTTTTTT+TGG - Chr6:6196251-6196270 None:intergenic 10.0%
!!! ATTTTTAATAGTGAAACTTT+AGG - Chr6:6196214-6196233 None:intergenic 15.0%
!!! GGCAAAAAATAATATTTTTT+TGG - Chr6:6196075-6196094 None:intergenic 15.0%
!! AAATGGAGTTCATTTATAAA+GGG + Chr6:6198055-6198074 MsG0680030622.01.T01:intron 20.0%
!! AATACAATCCAACATAATAA+GGG - Chr6:6199158-6199177 None:intergenic 20.0%
!! AGTCATAGTCAATTAATATT+TGG + Chr6:6196008-6196027 MsG0680030622.01.T01:intron 20.0%
!! ATCAGATATAATGATAGTTA+TGG - Chr6:6199195-6199214 None:intergenic 20.0%
!! CAATGAATAATGTATATGTA+AGG - Chr6:6196535-6196554 None:intergenic 20.0%
!! TAAATGGAGTTCATTTATAA+AGG + Chr6:6198054-6198073 MsG0680030622.01.T01:intron 20.0%
!! TCCTTTATATTGAACTTATT+GGG + Chr6:6198383-6198402 MsG0680030622.01.T01:intron 20.0%
!! TTATTCAAACATGATCTATA+TGG + Chr6:6197937-6197956 MsG0680030622.01.T01:intron 20.0%
!! TTTATGATTATATTAGTGGA+TGG - Chr6:6198103-6198122 None:intergenic 20.0%
!!! AAATATTATTTTTTGCCATC+AGG + Chr6:6196078-6196097 MsG0680030622.01.T01:intron 20.0%
!!! AATCACACTTAATTTTAGAA+AGG - Chr6:6196172-6196191 None:intergenic 20.0%
!!! AATCAGTTTGAATTTTGAAA+AGG - Chr6:6197058-6197077 None:intergenic 20.0%
!!! ACTTTCAAAGTGATTTTAAA+GGG - Chr6:6196046-6196065 None:intergenic 20.0%
!!! AGAATCACTTTTTTAATGAT+TGG - Chr6:6197088-6197107 None:intergenic 20.0%
!!! ATCAGTTTGAATTTTGAAAA+GGG - Chr6:6197057-6197076 None:intergenic 20.0%
!!! ATGGATTTTTTTCTGTATTT+AGG + Chr6:6197468-6197487 MsG0680030622.01.T01:intron 20.0%
!!! ATGTTTTTTTCATAAGCTAA+AGG - Chr6:6198186-6198205 None:intergenic 20.0%
!!! GATTTAAGAGTTTGTTTTTA+AGG + Chr6:6196267-6196286 MsG0680030622.01.T01:intron 20.0%
!!! TACTTTCAAAGTGATTTTAA+AGG - Chr6:6196047-6196066 None:intergenic 20.0%
!!! TGGATTTTTTTCTGTATTTA+GGG + Chr6:6197469-6197488 MsG0680030622.01.T01:intron 20.0%
!!! TTATGATTATATTAGTGGAT+GGG - Chr6:6198102-6198121 None:intergenic 20.0%
!!! TTGGATTTTTTCTGTATTTT+GGG + Chr6:6198004-6198023 MsG0680030622.01.T01:intron 20.0%
!!! TTTGGATTTTTTCTGTATTT+TGG + Chr6:6198003-6198022 MsG0680030622.01.T01:intron 20.0%
! AAAAAATAAGCCAATCCAAA+CGG - Chr6:6197496-6197515 None:intergenic 25.0%
! AAAGACAAAAACTTTGCATA+AGG - Chr6:6197360-6197379 None:intergenic 25.0%
! ACAAGATATTACTAGTATGT+TGG - Chr6:6195732-6195751 None:intergenic 25.0%
! ACCCAATAAGTTCAATATAA+AGG - Chr6:6198387-6198406 None:intergenic 25.0%
! ACTATTAAAAATTGAGAGCT+TGG + Chr6:6196222-6196241 MsG0680030622.01.T01:intron 25.0%
! AGATAACTGAGATTCATTTA+AGG - Chr6:6195412-6195431 None:intergenic 25.0%
! ATAACTGAGATTCATTTAAG+GGG - Chr6:6195410-6195429 None:intergenic 25.0%
! ATTAAACTGTTTATCCAAAC+TGG + Chr6:6198348-6198367 MsG0680030622.01.T01:intron 25.0%
! CAATACAATCCAACATAATA+AGG - Chr6:6199159-6199178 None:intergenic 25.0%
! CATACTAGTAATATCTTGTT+TGG + Chr6:6195733-6195752 MsG0680030622.01.T01:intron 25.0%
! CATTATTCATAAGTTTGTCA+AGG - Chr6:6197609-6197628 None:intergenic 25.0%
! CGTGTTCAATCTAATAATAT+TGG - Chr6:6196312-6196331 None:intergenic 25.0%
! CTATTAAAAATTGAGAGCTT+GGG + Chr6:6196223-6196242 MsG0680030622.01.T01:intron 25.0%
! CTATTTCATCCAATGATTAT+CGG - Chr6:6198777-6198796 None:intergenic 25.0%
! CTCCTTTATATTGAACTTAT+TGG + Chr6:6198382-6198401 MsG0680030622.01.T01:intron 25.0%
! CTTTCTATGTTGTAAAGAAA+GGG + Chr6:6197269-6197288 MsG0680030622.01.T01:CDS 25.0%
! GATAACTGAGATTCATTTAA+GGG - Chr6:6195411-6195430 None:intergenic 25.0%
! GTGGTTTATGATTATATTAG+TGG - Chr6:6198107-6198126 None:intergenic 25.0%
! GTTCAAATTCTGTTATTCTA+TGG + Chr6:6199095-6199114 MsG0680030622.01.T01:intron 25.0%
! TAATGTATATGTAAGGTTTG+TGG - Chr6:6196528-6196547 None:intergenic 25.0%
! TAATTGACTATGACTATATG+AGG - Chr6:6196003-6196022 None:intergenic 25.0%
! TATAAATGAACTCCATTTAG+TGG - Chr6:6198053-6198072 None:intergenic 25.0%
! TATGAATTGCATAAATTCAG+TGG + Chr6:6195925-6195944 MsG0680030622.01.T01:intron 25.0%
! TTATATTGAACTTATTGGGT+TGG + Chr6:6198387-6198406 MsG0680030622.01.T01:intron 25.0%
! TTTCCTCTTATATTGGATAA+AGG + Chr6:6198727-6198746 MsG0680030622.01.T01:intron 25.0%
!! AGTCAAAATTGTTTTCATCA+AGG - Chr6:6198221-6198240 None:intergenic 25.0%
!! CAATAGTGTAAGTTACATTT+TGG - Chr6:6197125-6197144 None:intergenic 25.0%
!! CGTAAATTTTCCTCTTATAT+TGG + Chr6:6198720-6198739 MsG0680030622.01.T01:intron 25.0%
!! TAAAAATGTTGGAGATCTTT+TGG - Chr6:6195697-6195716 None:intergenic 25.0%
!! TTATGCAAAGTTTTTGTCTT+TGG + Chr6:6197359-6197378 MsG0680030622.01.T01:intron 25.0%
!!! AAGCTGTAAGTGTTTTTAAA+GGG + Chr6:6198524-6198543 MsG0680030622.01.T01:CDS 25.0%
!!! CACTTTTTTAATGATTGGAA+AGG - Chr6:6197083-6197102 None:intergenic 25.0%
!!! CTTTGTTGTTTTGGTTAAAA+TGG + Chr6:6198449-6198468 MsG0680030622.01.T01:intron 25.0%
!!! GTTTTGGTTAAAATGGAAAT+GGG + Chr6:6198456-6198475 MsG0680030622.01.T01:intron 25.0%
!!! TGTTTTGGTTAAAATGGAAA+TGG + Chr6:6198455-6198474 MsG0680030622.01.T01:intron 25.0%
!!! TTTGGAATTTTTCTGCATTT+GGG + Chr6:6197377-6197396 MsG0680030622.01.T01:intron 25.0%
!!! TTTTGGTTAAAATGGAAATG+GGG + Chr6:6198457-6198476 MsG0680030622.01.T01:intron 25.0%
!!! TTTTTTTCATAAGCTAAAGG+CGG - Chr6:6198183-6198202 None:intergenic 25.0%
AAAAAAGTGATTCTGCAACT+GGG + Chr6:6197094-6197113 MsG0680030622.01.T01:intron 30.0%
AAAAATAAGCCAATCCAAAC+GGG - Chr6:6197495-6197514 None:intergenic 30.0%
AAAAGAAATTCACTTCAAGC+TGG - Chr6:6195796-6195815 None:intergenic 30.0%
AAAGAAATTCACTTCAAGCT+GGG - Chr6:6195795-6195814 None:intergenic 30.0%
AAGACAAAAACTTAGCATGA+AGG - Chr6:6197985-6198004 None:intergenic 30.0%
AATAAGCAGAAAACAGCTTA+TGG - Chr6:6197798-6197817 None:intergenic 30.0%
AATATAAAGGAGCTCCATTT+AGG - Chr6:6198374-6198393 None:intergenic 30.0%
ACAGAAAAAAATCCATAAGC+TGG - Chr6:6197464-6197483 None:intergenic 30.0%
AGATAGATTATACTTCCTGA+TGG - Chr6:6196096-6196115 None:intergenic 30.0%
AGATCACTGAGATTCATTTA+AGG - Chr6:6195484-6195503 None:intergenic 30.0%
ATCACTGAGATTCATTTAAG+GGG - Chr6:6195482-6195501 None:intergenic 30.0%
CACAAATCATGCATAACTAA+GGG - Chr6:6197669-6197688 None:intergenic 30.0%
CAGAAAAAAATCCATAAGCT+GGG - Chr6:6197463-6197482 None:intergenic 30.0%
CATACAGAAGATGAAAGTAA+AGG - Chr6:6197334-6197353 None:intergenic 30.0%
CGATAATCATTGGATGAAAT+AGG + Chr6:6198775-6198794 MsG0680030622.01.T01:intron 30.0%
CTTTCAAAGCCAAATATAGA+CGG - Chr6:6195865-6195884 None:intergenic 30.0%
GAAGAGATTAATGTTCTTTC+AGG + Chr6:6199280-6199299 MsG0680030622.01.T01:intron 30.0%
GATCACTGAGATTCATTTAA+GGG - Chr6:6195483-6195502 None:intergenic 30.0%
GCTTTCTATGTTGTAAAGAA+AGG + Chr6:6197268-6197287 MsG0680030622.01.T01:CDS 30.0%
GTAAAGAAAGGGAATGTTAT+TGG + Chr6:6197280-6197299 MsG0680030622.01.T01:CDS 30.0%
TAAAAAAGTGATTCTGCAAC+TGG + Chr6:6197093-6197112 MsG0680030622.01.T01:intron 30.0%
TAGCTTATGAAAACAGCTTA+TGG + Chr6:6197836-6197855 MsG0680030622.01.T01:intron 30.0%
TCACAAATCATGCATAACTA+AGG - Chr6:6197670-6197689 None:intergenic 30.0%
TGAACACGTTCACTTAATTA+AGG + Chr6:6196324-6196343 MsG0680030622.01.T01:intron 30.0%
TGAGCTTAACTAAGTTAGTA+GGG - Chr6:6196559-6196578 None:intergenic 30.0%
TTCAAACATGATCTATATGG+AGG + Chr6:6197940-6197959 MsG0680030622.01.T01:intron 30.0%
TTCATTTATAAAGGGCTCTT+TGG + Chr6:6198063-6198082 MsG0680030622.01.T01:intron 30.0%
TTGAATGTAACCACATGTAT+AGG + Chr6:6198802-6198821 MsG0680030622.01.T01:intron 30.0%
TTTCAAAGCCAAATATAGAC+GGG - Chr6:6195864-6195883 None:intergenic 30.0%
! AACACATAGTTTGTCATATC+TGG - Chr6:6196791-6196810 None:intergenic 30.0%
! ATTTTCCTCCCTTATTATGT+TGG + Chr6:6199147-6199166 MsG0680030622.01.T01:intron 30.0%
! TCATGCTAAGTTTTTGTCTT+TGG + Chr6:6197985-6198004 MsG0680030622.01.T01:intron 30.0%
!! GAAGCTGTAAGTGTTTTTAA+AGG + Chr6:6198523-6198542 MsG0680030622.01.T01:CDS 30.0%
!! TTAAAGTTGATAACTCACAC+TGG - Chr6:6199384-6199403 None:intergenic 30.0%
!!! AAACTGTTGTCGTGTTTTTT+GGG - Chr6:6196953-6196972 None:intergenic 30.0%
!!! CTTTGGAATTTTTCTGCATT+TGG + Chr6:6197376-6197395 MsG0680030622.01.T01:intron 30.0%
!!! GTTTTAGAAACGATACGTTA+TGG - Chr6:6196835-6196854 None:intergenic 30.0%
!!! TAAACTGTTGTCGTGTTTTT+TGG - Chr6:6196954-6196973 None:intergenic 30.0%
AAGGTTTGTGGTTCAAACTT+CGG - Chr6:6196516-6196535 None:intergenic 35.0%
ACAACACATACAACACATCT+GGG + Chr6:6196669-6196688 MsG0680030622.01.T01:intron 35.0%
ACAATCCAACATAATAAGGG+AGG - Chr6:6199155-6199174 None:intergenic 35.0%
AGCTAACAATATCAAGCCTT+TGG - Chr6:6198916-6198935 None:intergenic 35.0%
AGGCCTTTATCCAATATAAG+AGG - Chr6:6198733-6198752 None:intergenic 35.0%
ATACATCACCCGTCTATATT+TGG + Chr6:6195853-6195872 MsG0680030622.01.T01:intron 35.0%
ATACTACATCTGAACAGATG+TGG + Chr6:6195961-6195980 MsG0680030622.01.T01:intron 35.0%
ATCTTGCGATCTCTTTAATG+AGG - Chr6:6199345-6199364 None:intergenic 35.0%
ATTCGCAATTGACAACATTG+AGG - Chr6:6198968-6198987 None:intergenic 35.0%
CCAAAACAACAAAGAAGACA+TGG - Chr6:6198443-6198462 None:intergenic 35.0%
GTGAGCTTAACTAAGTTAGT+AGG - Chr6:6196560-6196579 None:intergenic 35.0%
TGAGACTGTTTGAGAGTTTA+AGG + Chr6:6197754-6197773 MsG0680030622.01.T01:intron 35.0%
TGCAAGCAAACAAGCATAAA+GGG - Chr6:6197219-6197238 None:intergenic 35.0%
TGTGATGTTGAACCACTAAA+TGG + Chr6:6198038-6198057 MsG0680030622.01.T01:intron 35.0%
TGTTGGATTGTATTGCATAG+TGG + Chr6:6199164-6199183 MsG0680030622.01.T01:intron 35.0%
TTCTTTACCTCAAGAAACTG+AGG + Chr6:6198549-6198568 MsG0680030622.01.T01:CDS 35.0%
TTGAACTACTAGAGCATGTT+TGG + Chr6:6197692-6197711 MsG0680030622.01.T01:intron 35.0%
TTGTGTAGTACTAGCATAAG+CGG + Chr6:6197731-6197750 MsG0680030622.01.T01:intron 35.0%
! AAAGTGTCTCAAACCTGATA+AGG - Chr6:6198667-6198686 None:intergenic 35.0%
! AGTGTTTTCATTTTCCAAGC+AGG + Chr6:6198492-6198511 MsG0680030622.01.T01:intron 35.0%
! TTTATCCAAACTGGCCTAAA+TGG + Chr6:6198357-6198376 MsG0680030622.01.T01:intron 35.0%
!! AAGAAGACATGGTTGTTTTC+AGG - Chr6:6198432-6198451 None:intergenic 35.0%
!!! CCATGTCTTCTTTGTTGTTT+TGG + Chr6:6198440-6198459 MsG0680030622.01.T01:intron 35.0%
!!! GTTTTTTGGGATGTTCATGT+TGG - Chr6:6196940-6196959 None:intergenic 35.0%
!!! TGCTTGCAGATTTTTTGCAA+TGG + Chr6:6197231-6197250 MsG0680030622.01.T01:intron 35.0%
AAACCACTCATGAGACTGTT+TGG + Chr6:6198120-6198139 MsG0680030622.01.T01:intron 40.0%
AAACTTGCCAGAGACACAAA+TGG - Chr6:6199235-6199254 None:intergenic 40.0%
AACACTCCTGGGAAAATACT+TGG - Chr6:6196754-6196773 None:intergenic 40.0%
AACCACTCATGAGACTGTTT+GGG + Chr6:6198121-6198140 MsG0680030622.01.T01:intron 40.0%
ACACATTGTCACACAACATC+TGG + Chr6:6196641-6196660 MsG0680030622.01.T01:intron 40.0%
ACACTCCTGGGAAAATACTT+GGG - Chr6:6196753-6196772 None:intergenic 40.0%
ACAGCGTTATAGCTGTAACT+TGG + Chr6:6199028-6199047 MsG0680030622.01.T01:intron 40.0%
AGATACTCCTCAGTTTCTTG+AGG - Chr6:6198559-6198578 None:intergenic 40.0%
ATGTCGTCACCGATAATCAT+TGG + Chr6:6198765-6198784 MsG0680030622.01.T01:intron 40.0%
ATTAAATCTGGGCCACACAA+TGG - Chr6:6196710-6196729 None:intergenic 40.0%
CACAACACATACAACACATC+TGG + Chr6:6196668-6196687 MsG0680030622.01.T01:intron 40.0%
CCTTTGGACACACAAAACAA+GGG - Chr6:6198900-6198919 None:intergenic 40.0%
CGAATCGCAAATGACAATAG+TGG + Chr6:6198983-6199002 MsG0680030622.01.T01:intron 40.0%
CTAACTTAGTTAAGCTCACG+AGG + Chr6:6196561-6196580 MsG0680030622.01.T01:intron 40.0%
CTGCAAGCAAACAAGCATAA+AGG - Chr6:6197220-6197239 None:intergenic 40.0%
CTTGTCTCACATGGACTTAA+GGG + Chr6:6198577-6198596 MsG0680030622.01.T01:CDS 40.0%
GAATCGACACTTCACATTGA+AGG - Chr6:6198863-6198882 None:intergenic 40.0%
GATGTGTTGTATGTGTTGTG+TGG - Chr6:6196668-6196687 None:intergenic 40.0%
GCTATAACGCTGTAGCATAA+TGG - Chr6:6199021-6199040 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG - Chr6:6196628-6196609 None:intergenic 40.0%
GTCTCTGGCAAGTTTGTAAT+TGG + Chr6:6199240-6199259 MsG0680030622.01.T01:intron 40.0%
GTGGTCCAGATTTAATGTCA+CGG - Chr6:6196616-6196635 None:intergenic 40.0%
TACATCTGAACAGATGTGGT+GGG + Chr6:6195965-6195984 MsG0680030622.01.T01:intron 40.0%
TATGTTCTTCTCCCAGCTTA+TGG + Chr6:6197449-6197468 MsG0680030622.01.T01:intron 40.0%
TCTTGTCTCACATGGACTTA+AGG + Chr6:6198576-6198595 MsG0680030622.01.T01:CDS 40.0%
TGCGTATCACAGAACAATAG+TGG + Chr6:6199069-6199088 MsG0680030622.01.T01:intron 40.0%
TGTCACCGTGACATTAAATC+TGG + Chr6:6196608-6196627 MsG0680030622.01.T01:intron 40.0%
TGTCACCGTGACATTAAATC+TGG - Chr6:6196627-6196608 None:intergenic 40.0%
TTTCAGGATCCATGTTCTTC+AGG + Chr6:6199296-6199315 MsG0680030622.01.T01:intron 40.0%
! CATGTAAATGCGGGTAGTTT+TGG + Chr6:6198625-6198644 MsG0680030622.01.T01:CDS 40.0%
! TCATTTTCCAAGCAGGTTTC+TGG + Chr6:6198499-6198518 MsG0680030622.01.T01:intron 40.0%
! TTAGTCTTTGCAGTTGCGTA+CGG + Chr6:6195583-6195602 MsG0680030622.01.T01:intron 40.0%
!! ACTTGCTGTTTGTCCTTATC+AGG + Chr6:6198651-6198670 MsG0680030622.01.T01:CDS 40.0%
!! AGACATGGTTGTTTTCAGGA+AGG - Chr6:6198428-6198447 None:intergenic 40.0%
!! TTGTAGTTGATGATGATGCG+TGG - Chr6:6197012-6197031 None:intergenic 40.0%
AATTGTTGCGACAACACTCC+TGG - Chr6:6196766-6196785 None:intergenic 45.0%
ACTTAGTTAAGCTCACGAGG+AGG + Chr6:6196564-6196583 MsG0680030622.01.T01:intron 45.0%
ATGGCTGACACCTATACATG+TGG - Chr6:6198815-6198834 None:intergenic 45.0%
ATTGTTGCGACAACACTCCT+GGG - Chr6:6196765-6196784 None:intergenic 45.0%
CACAACACAACACCATTGTG+TGG + Chr6:6196695-6196714 MsG0680030622.01.T01:intron 45.0%
CATGTATAGGTGTCAGCCAT+CGG + Chr6:6198815-6198834 MsG0680030622.01.T01:intron 45.0%
CTACATCTGAACAGATGTGG+TGG + Chr6:6195964-6195983 MsG0680030622.01.T01:intron 45.0%
CTTAGTTAAGCTCACGAGGA+GGG + Chr6:6196565-6196584 MsG0680030622.01.T01:intron 45.0%
GCCTTTGGACACACAAAACA+AGG - Chr6:6198901-6198920 None:intergenic 45.0%
GTGGCCCAGATTTAATGTCA+CGG + Chr6:6196714-6196733 MsG0680030622.01.T01:intron 45.0%
GTGTGACAATGTGTGTTGTG+TGG - Chr6:6196635-6196654 None:intergenic 45.0%
TTAGTTAAGCTCACGAGGAG+GGG + Chr6:6196566-6196585 MsG0680030622.01.T01:intron 45.0%
TTCAGGAGGAGGAACTGTTA+TGG + Chr6:6199313-6199332 MsG0680030622.01.T01:CDS 45.0%
! AGTGCTGCTCATGTAAATGC+GGG + Chr6:6198616-6198635 MsG0680030622.01.T01:CDS 45.0%
! CAGTGCTGCTCATGTAAATG+CGG + Chr6:6198615-6198634 MsG0680030622.01.T01:CDS 45.0%
! GCTTATGCCATTTGTGTCTC+TGG + Chr6:6199225-6199244 MsG0680030622.01.T01:intron 45.0%
! TATTTAGGGCCCGTTTGGAT+TGG + Chr6:6197483-6197502 MsG0680030622.01.T01:intron 45.0%
! TGTCACCCAAGTATTTTCCC+AGG + Chr6:6196745-6196764 MsG0680030622.01.T01:intron 45.0%
! TTCTGTATTTAGGGCCCGTT+TGG + Chr6:6197478-6197497 MsG0680030622.01.T01:intron 45.0%
! TTGAAGGTGTGTTCAGTGTC+CGG - Chr6:6198847-6198866 None:intergenic 45.0%
!! AGCAGCACTGATAGAGTAAG+TGG - Chr6:6198605-6198624 None:intergenic 45.0%
!! CACAATGGTGTTGTGTTGTG+TGG - Chr6:6196695-6196714 None:intergenic 45.0%
!! GAGGAGTATCTTGTCTCACA+TGG + Chr6:6198568-6198587 MsG0680030622.01.T01:CDS 45.0%
!! TCGAGAGATTAGTCTCTGCA+TGG + Chr6:6195431-6195450 MsG0680030622.01.T01:CDS 45.0%
!!! CCCTTGTTTTGTGTGTCCAA+AGG + Chr6:6198897-6198916 MsG0680030622.01.T01:intron 45.0%
AGCTTCACCAGAAACCTGCT+TGG - Chr6:6198509-6198528 None:intergenic 50.0%
CAGGATCCATGTTCTTCAGG+AGG + Chr6:6199299-6199318 MsG0680030622.01.T01:intron 50.0%
CTCCCAAACAGTCTCATGAG+TGG - Chr6:6198126-6198145 None:intergenic 50.0%
GACGACATGCAGTGCTTCAT+AGG - Chr6:6198753-6198772 None:intergenic 50.0%
GAGCTCCATTTAGGCCAGTT+TGG - Chr6:6198365-6198384 None:intergenic 50.0%
GATCCATGTTCTTCAGGAGG+AGG + Chr6:6199302-6199321 MsG0680030622.01.T01:CDS 50.0%
GTTCCTCCTCCTGAAGAACA+TGG - Chr6:6199308-6199327 None:intergenic 50.0%
!! CTGAACAGATGTGGTGGGTG+AGG + Chr6:6195970-6195989 MsG0680030622.01.T01:intron 55.0%
TGTCAGCCATCGGCATGTGC+CGG + Chr6:6198825-6198844 MsG0680030622.01.T01:intron 60.0%
!! CACGAGGAGGGGAAGCACTT+GGG + Chr6:6196577-6196596 MsG0680030622.01.T01:intron 60.0%
!! TCACGAGGAGGGGAAGCACT+TGG + Chr6:6196576-6196595 MsG0680030622.01.T01:intron 60.0%
CAGTGTCCGGCACATGCCGA+TGG - Chr6:6198834-6198853 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 6195378 6199403 6195378 ID=MsG0680030622.01;Name=MsG0680030622.01
Chr6 mRNA 6195378 6199403 6195378 ID=MsG0680030622.01.T01;Parent=MsG0680030622.01;Name=MsG0680030622.01.T01;_AED=0.61;_eAED=0.63;_QI=0|0.33|0.25|0.75|1|0.75|4|0|162
Chr6 exon 6195378 6195496 6195378 ID=MsG0680030622.01.T01:exon:3713;Parent=MsG0680030622.01.T01
Chr6 exon 6197240 6197348 6197240 ID=MsG0680030622.01.T01:exon:3714;Parent=MsG0680030622.01.T01
Chr6 exon 6198514 6198672 6198514 ID=MsG0680030622.01.T01:exon:3715;Parent=MsG0680030622.01.T01
Chr6 exon 6199302 6199403 6199302 ID=MsG0680030622.01.T01:exon:3716;Parent=MsG0680030622.01.T01
Chr6 CDS 6195378 6195496 6195378 ID=MsG0680030622.01.T01:cds;Parent=MsG0680030622.01.T01
Chr6 CDS 6197240 6197348 6197240 ID=MsG0680030622.01.T01:cds;Parent=MsG0680030622.01.T01
Chr6 CDS 6198514 6198672 6198514 ID=MsG0680030622.01.T01:cds;Parent=MsG0680030622.01.T01
Chr6 CDS 6199302 6199403 6199302 ID=MsG0680030622.01.T01:cds;Parent=MsG0680030622.01.T01
Gene Sequence

>MsG0680030622.01.T01

ATGGAGAAGTATTTGTTGGGAGATGTCAACCCCTTAAATGAATCTCAGTTATCTCGAGAGATTAGTCTCTGCATGGAGAAGTATTTGTTGAGAGATGTCAACCCCTTAAATGAATCTCAATTTTTTGCAATGGCTGATGAGAAAGATGCTTTCTATGTTGTAAAGAAAGGGAATGTTATTGGCATATACAAGTCTTTCACTGATATTCAACCTTTACTTTCATCTTCTGTTTCTGGTGAAGCTGTAAGTGTTTTTAAAGGGTTTTCTTTACCTCAAGAAACTGAGGAGTATCTTGTCTCACATGGACTTAAGGGAGCCACTTACTCTATCAGTGCTGCTCATGTAAATGCGGGTAGTTTTGGAAGACTTGCTGTTTGTCCTTATCAGGATCCATGTTCTTCAGGAGGAGGAACTGTTATGGCAAATTCCTCATTAAAGAGATCGCAAGATGCATTGCAAGCTGACACCAGTGTGAGTTATCAACTTTAA
Protein sequence

>MsG0680030622.01.T01

MEKYLLGDVNPLNESQLSREISLCMEKYLLRDVNPLNESQFFAMADEKDAFYVVKKGNVIGIYKSFTDIQPLLSSSVSGEAVSVFKGFSLPQETEEYLVSHGLKGATYSISAAHVNAGSFGRLAVCPYQDPCSSGGGTVMANSSLKRSQDALQADTSVSYQL*