AlfalfaGEDB | MsG0680030622.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030622.01

KEGG: -
GO: -
PFAM: PF01693

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030622.01.T01	XP_024641190.1	94.017	117	7	0	44	160	1	117	2.81E-63	207

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030622.01.T01	A0A396H9H0	94.017	117	7	0	44	160	1	117	1.63e-63	207

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048258.01	MsG0680030622.01	0.801566	8.477936e-49	4.061762e-46
MsG0180000111.01	MsG0680030622.01	0.813747	2.189158e-51	1.441585e-48
MsG0180002583.01	MsG0680030622.01	0.815184	1.052994e-51	7.209018e-49
MsG0180003416.01	MsG0680030622.01	0.802083	6.636683e-49	3.221757e-46
MsG0180003485.01	MsG0680030622.01	0.821874	3.200942e-53	2.636535e-50
MsG0180004375.01	MsG0680030622.01	0.805417	1.348568e-49	7.130753e-47
MsG0180006231.01	MsG0680030622.01	0.801530	8.619774e-49	4.126101e-46
MsG0280006540.01	MsG0680030622.01	0.808230	3.429886e-50	1.950483e-47
MsG0280007359.01	MsG0680030622.01	0.809723	1.643437e-50	9.722859e-48
MsG0280009866.01	MsG0680030622.01	0.808962	2.392697e-50	1.387042e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030622.01.T01	AT3G01410	47.664	107	56	0	44	150	5	111	1.40e-28	107
MsG0680030622.01.T01	AT3G01410	47.664	107	56	0	44	150	5	111	1.40e-28	107
MsG0680030622.01.T01	AT1G24090	45.614	114	53	1	43	156	76	180	1.69e-23	94.7
MsG0680030622.01.T01	AT5G51080	43.269	104	59	0	47	150	14	117	3.09e-19	82.0
MsG0680030622.01.T01	AT5G51080	43.269	104	59	0	47	150	77	180	9.06e-19	81.6
MsG0680030622.01.T01	AT5G51080	43.269	104	59	0	47	150	77	180	9.06e-19	81.6

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Find 31 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTCTCAAACCTGATA+AGG	0.474134	6:-6198664	None:intergenic
ACTTGCTGTTTGTCCTTATC+AGG	0.263702	6:+6198651	MsG0680030622.01.T01:CDS
AGATAACTGAGATTCATTTA+AGG	0.243703	6:-6195409	None:intergenic
AGATACTCCTCAGTTTCTTG+AGG	0.586973	6:-6198556	None:intergenic
AGATCACTGAGATTCATTTA+AGG	0.243703	6:-6195481	None:intergenic
AGCAGCACTGATAGAGTAAG+TGG	0.536190	6:-6198602	None:intergenic
AGTGCTGCTCATGTAAATGC+GGG	0.591618	6:+6198616	MsG0680030622.01.T01:CDS
ATAACTGAGATTCATTTAAG+GGG	0.604669	6:-6195407	None:intergenic
ATCACTGAGATTCATTTAAG+GGG	0.580063	6:-6195479	None:intergenic
ATCTTGCGATCTCTTTAATG+AGG	0.527010	6:-6199342	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGTGATTCTGCAACT+GGG	+	Chr6:6197094-6197113	MsG0680030622.01.T01:intron	30.0%
AAAAATAAGCCAATCCAAAC+GGG	-	Chr6:6197495-6197514	None:intergenic	30.0%
AAAAGAAATTCACTTCAAGC+TGG	-	Chr6:6195796-6195815	None:intergenic	30.0%
AAAGAAATTCACTTCAAGCT+GGG	-	Chr6:6195795-6195814	None:intergenic	30.0%
AAGACAAAAACTTAGCATGA+AGG	-	Chr6:6197985-6198004	None:intergenic	30.0%
AATAAGCAGAAAACAGCTTA+TGG	-	Chr6:6197798-6197817	None:intergenic	30.0%
AATATAAAGGAGCTCCATTT+AGG	-	Chr6:6198374-6198393	None:intergenic	30.0%
ACAGAAAAAAATCCATAAGC+TGG	-	Chr6:6197464-6197483	None:intergenic	30.0%
AGATAGATTATACTTCCTGA+TGG	-	Chr6:6196096-6196115	None:intergenic	30.0%
AGATCACTGAGATTCATTTA+AGG	-	Chr6:6195484-6195503	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	6195378	6199403	6195378	ID=MsG0680030622.01;Name=MsG0680030622.01
Chr6	mRNA	6195378	6199403	6195378	ID=MsG0680030622.01.T01;Parent=MsG0680030622.01;Name=MsG0680030622.01.T01;_AED=0.61;_eAED=0.63;_QI=0\|0.33\|0.25\|0.75\|1\|0.75\|4\|0\|162
Chr6	exon	6195378	6195496	6195378	ID=MsG0680030622.01.T01:exon:3713;Parent=MsG0680030622.01.T01
Chr6	exon	6197240	6197348	6197240	ID=MsG0680030622.01.T01:exon:3714;Parent=MsG0680030622.01.T01
Chr6	exon	6198514	6198672	6198514	ID=MsG0680030622.01.T01:exon:3715;Parent=MsG0680030622.01.T01
Chr6	exon	6199302	6199403	6199302	ID=MsG0680030622.01.T01:exon:3716;Parent=MsG0680030622.01.T01
Chr6	CDS	6195378	6195496	6195378	ID=MsG0680030622.01.T01:cds;Parent=MsG0680030622.01.T01
Chr6	CDS	6197240	6197348	6197240	ID=MsG0680030622.01.T01:cds;Parent=MsG0680030622.01.T01
Chr6	CDS	6198514	6198672	6198514	ID=MsG0680030622.01.T01:cds;Parent=MsG0680030622.01.T01
Chr6	CDS	6199302	6199403	6199302	ID=MsG0680030622.01.T01:cds;Parent=MsG0680030622.01.T01

Gene Sequence

>MsG0680030622.01.T01

ATGGAGAAGTATTTGTTGGGAGATGTCAACCCCTTAAATGAATCTCAGTTATCTCGAGAGATTAGTCTCTGCATGGAGAAGTATTTGTTGAGAGATGTCAACCCCTTAAATGAATCTCAATTTTTTGCAATGGCTGATGAGAAAGATGCTTTCTATGTTGTAAAGAAAGGGAATGTTATTGGCATATACAAGTCTTTCACTGATATTCAACCTTTACTTTCATCTTCTGTTTCTGGTGAAGCTGTAAGTGTTTTTAAAGGGTTTTCTTTACCTCAAGAAACTGAGGAGTATCTTGTCTCACATGGACTTAAGGGAGCCACTTACTCTATCAGTGCTGCTCATGTAAATGCGGGTAGTTTTGGAAGACTTGCTGTTTGTCCTTATCAGGATCCATGTTCTTCAGGAGGAGGAACTGTTATGGCAAATTCCTCATTAAAGAGATCGCAAGATGCATTGCAAGCTGACACCAGTGTGAGTTATCAACTTTAA

Protein sequence

>MsG0680030622.01.T01

MEKYLLGDVNPLNESQLSREISLCMEKYLLRDVNPLNESQFFAMADEKDAFYVVKKGNVIGIYKSFTDIQPLLSSSVSGEAVSVFKGFSLPQETEEYLVSHGLKGATYSISAAHVNAGSFGRLAVCPYQDPCSSGGGTVMANSSLKRSQDALQADTSVSYQL*