AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004124.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004124.01.T01 MTR_1g075660 97.797 227 5 0 41 267 50 276 3.96e-160 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004124.01.T01 AT3G23400 74.468 188 48 0 80 267 97 284 5.49e-104 304
MsG0180004124.01.T01 AT3G23400 77.119 118 27 0 80 197 97 214 2.13e-63 198
MsG0180004124.01.T01 AT3G23400 76.316 76 18 0 80 155 97 172 2.22e-34 124
MsG0180004124.01.T01 AT3G23400 76.316 76 18 0 80 155 97 172 2.22e-34 124

Find 32 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAACAAATATTCCTTTA+AGG 0.088989 1:-73726333 None:intergenic
AACTTTAATTTCAAAGTAAT+TGG 0.172588 1:-73726416 None:intergenic
TGTAACATATTTAACCTTAA+AGG 0.202545 1:+73726319 MsG0180004124.01.T01:exon
GATATACCCAACCCACACTA+TGG 0.396755 1:+73726272 MsG0180004124.01.T01:exon
TGTTTATAGATAATTACATA+TGG 0.416492 1:+73726348 MsG0180004124.01.T01:exon
GGAGCTCCATAGTGTGGGTT+GGG 0.430889 1:-73726278 None:intergenic
CTCAATGCATCTGGAATTTG+AGG 0.437203 1:-73726076 None:intergenic
AAAACCACAGTGAAGACAAC+CGG 0.437328 1:+73726022 MsG0180004124.01.T01:exon
CTCTATCTCCTCTGGTGACG+CGG 0.440764 1:-73726156 None:intergenic
GATTGTGGCCTCAATGCATC+TGG 0.448068 1:-73726085 None:intergenic
TAGCTCACCTCTATCTCCTC+TGG 0.476879 1:-73726164 None:intergenic
ATTGGAGACTAAAACTGAAA+AGG 0.488872 1:-73726398 None:intergenic
GAGGAGATAGAGGTGAGCTA+AGG 0.492802 1:+73726167 MsG0180004124.01.T01:exon
CTCAAATTCCAGATGCATTG+AGG 0.496761 1:+73726077 MsG0180004124.01.T01:exon
AGGAGATAGAGGTGAGCTAA+GGG 0.519071 1:+73726168 MsG0180004124.01.T01:exon
CCACAATCTAATAGAGGAAG+TGG 0.521959 1:+73726100 MsG0180004124.01.T01:exon
AGGAGCTCCATAGTGTGGGT+TGG 0.524813 1:-73726279 None:intergenic
GCCCTAGGAGCTCCATAGTG+TGG 0.534101 1:-73726284 None:intergenic
CCCACACTATGGAGCTCCTA+GGG 0.543476 1:+73726283 MsG0180004124.01.T01:exon
TTGAGGCCACAATCTAATAG+AGG 0.552114 1:+73726094 MsG0180004124.01.T01:exon
CCACTTCCTCTATTAGATTG+TGG 0.557605 1:-73726100 None:intergenic
CCCTAGGAGCTCCATAGTGT+GGG 0.557670 1:-73726283 None:intergenic
ACCCACACTATGGAGCTCCT+AGG 0.567793 1:+73726282 MsG0180004124.01.T01:exon
CGGCAACTGTGAAAATGTCC+CGG 0.576615 1:-73726041 None:intergenic
TCTATCTCCTCTGGTGACGC+GGG 0.580159 1:-73726155 None:intergenic
CGCGTCACCAGAGGAGATAG+AGG 0.588847 1:+73726157 MsG0180004124.01.T01:exon
AAACCACAGTGAAGACAACC+GGG 0.596707 1:+73726023 MsG0180004124.01.T01:exon
GCGGATACCCGCGTCACCAG+AGG 0.641068 1:+73726148 MsG0180004124.01.T01:exon
GGAATTTGAGGCAAATCTAG+AGG 0.645956 1:-73726064 None:intergenic
ATTTGAGGCAAATCTAGAGG+CGG 0.686437 1:-73726061 None:intergenic
TGAAGTTACATATCTTGACG+CGG 0.700354 1:+73726129 MsG0180004124.01.T01:exon
TGTCCCGGTTGTCTTCACTG+TGG 0.714687 1:-73726026 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATAGATATAGTAT+AGG + Chr1:73724584-73724603 MsG0180004124.01.T01:intron 10.0%
!! ATAATTGCATAATAAAAATA+GGG + Chr1:73724528-73724547 MsG0180004124.01.T01:intron 10.0%
!! TATAAGTATTTATCATATAA+GGG + Chr1:73724970-73724989 MsG0180004124.01.T01:intron 10.0%
!! TATAATTGCATAATAAAAAT+AGG + Chr1:73724527-73724546 MsG0180004124.01.T01:intron 10.0%
!!! TTATTTTAGTTAACATTAAT+TGG - Chr1:73723457-73723476 None:intergenic 10.0%
!! AAATATTACATCATTATATC+AGG - Chr1:73725542-73725561 None:intergenic 15.0%
!! AACATTAATTGGAAATTATT+GGG - Chr1:73723446-73723465 None:intergenic 15.0%
!! ATATTTGCATATTAGAAAAA+TGG + Chr1:73723686-73723705 MsG0180004124.01.T01:intron 15.0%
!! ATTGTCATTAAAATGTATTT+AGG + Chr1:73724672-73724691 MsG0180004124.01.T01:intron 15.0%
!! GTATAAGTATTTATCATATA+AGG + Chr1:73724969-73724988 MsG0180004124.01.T01:intron 15.0%
!! TAACATTAATTGGAAATTAT+TGG - Chr1:73723447-73723466 None:intergenic 15.0%
!! TAAGAATAAGAAATAAAATG+TGG + Chr1:73723075-73723094 MsG0180004124.01.T01:intron 15.0%
!! TAATTGCATAATAAAAATAG+GGG + Chr1:73724529-73724548 MsG0180004124.01.T01:intron 15.0%
!! TATAAACAAATATTCCTTTA+AGG - Chr1:73726336-73726355 None:intergenic 15.0%
!! TGTTTATAGATAATTACATA+TGG + Chr1:73726348-73726367 MsG0180004124.01.T01:exon 15.0%
!!! AACTTTAATTTCAAAGTAAT+TGG - Chr1:73726419-73726438 None:intergenic 15.0%
!!! ACATTTGATAAACATATTTT+TGG - Chr1:73725675-73725694 None:intergenic 15.0%
!!! ACTTAAGTATATAAGTTTTA+TGG + Chr1:73724631-73724650 MsG0180004124.01.T01:intron 15.0%
!!! TATATATTTTTGTTTTGCAA+AGG - Chr1:73724574-73724593 None:intergenic 15.0%
!!! TTTTTATGATAGTATTGTAT+TGG + Chr1:73726218-73726237 MsG0180004124.01.T01:exon 15.0%
!! AACTTAAAATGCAAGAAATT+TGG - Chr1:73722877-73722896 None:intergenic 20.0%
!! AATAAGAAATAAAATGTGGT+GGG + Chr1:73723079-73723098 MsG0180004124.01.T01:intron 20.0%
!! ACATTAATTGGAAATTATTG+GGG - Chr1:73723445-73723464 None:intergenic 20.0%
!! GATTATGTATAAGTTGTAAA+CGG + Chr1:73724992-73725011 MsG0180004124.01.T01:intron 20.0%
!! GTGTTGAAATGATTATTATT+GGG - Chr1:73722733-73722752 None:intergenic 20.0%
!! TGGATAAATAACTTGATTTA+GGG + Chr1:73724702-73724721 MsG0180004124.01.T01:intron 20.0%
!! TGTAACATATTTAACCTTAA+AGG + Chr1:73726319-73726338 MsG0180004124.01.T01:exon 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG + Chr1:73725063-73725082 MsG0180004124.01.T01:intron 20.0%
!!! ATGGGTAATTAGAATAATTT+TGG - Chr1:73722756-73722775 None:intergenic 20.0%
!!! ATTATGTTTTAGTCTCATTT+CGG + Chr1:73725627-73725646 MsG0180004124.01.T01:intron 20.0%
!!! CAAAGATTTTGATAATATAG+TGG + Chr1:73725749-73725768 MsG0180004124.01.T01:CDS 20.0%
!!! CTTTTGTTTGACAAATTAAA+TGG + Chr1:73724448-73724467 MsG0180004124.01.T01:intron 20.0%
!!! TGGGTAATTAGAATAATTTT+GGG - Chr1:73722755-73722774 None:intergenic 20.0%
!!! TTGAAAAATTGATTTGGATT+TGG - Chr1:73722805-73722824 None:intergenic 20.0%
! AAAATAGGGGAAATAGTTAT+AGG + Chr1:73724542-73724561 MsG0180004124.01.T01:intron 25.0%
! AAACAAAAGAAATCAGTCAT+AGG - Chr1:73723660-73723679 None:intergenic 25.0%
! AAATCAAGTTATTTATCCAG+AGG - Chr1:73724701-73724720 None:intergenic 25.0%
! AATCAAGTTATTTATCCAGA+GGG - Chr1:73724700-73724719 None:intergenic 25.0%
! AGTGTTATACTATATCCAAA+AGG - Chr1:73723540-73723559 None:intergenic 25.0%
! ATAAGAAATAAAATGTGGTG+GGG + Chr1:73723080-73723099 MsG0180004124.01.T01:intron 25.0%
! ATTTGGATTTGGATAATTGT+TGG - Chr1:73722794-73722813 None:intergenic 25.0%
! CTGGATAAATAACTTGATTT+AGG + Chr1:73724701-73724720 MsG0180004124.01.T01:intron 25.0%
! GAATAAGAAATAAAATGTGG+TGG + Chr1:73723078-73723097 MsG0180004124.01.T01:intron 25.0%
! TAGATTATACGAAAACAGTT+TGG + Chr1:73724847-73724866 MsG0180004124.01.T01:intron 25.0%
! TATAGGTGCATGATAATTAT+CGG - Chr1:73723418-73723437 None:intergenic 25.0%
! TCAAAAATCAAGATACGATA+CGG - Chr1:73723765-73723784 None:intergenic 25.0%
! TGGATATAGTATAACACTTA+TGG + Chr1:73723542-73723561 MsG0180004124.01.T01:intron 25.0%
! TTCAACTTTAACATCTTCAA+TGG - Chr1:73723127-73723146 None:intergenic 25.0%
! TTTGGATTTGGATAATTGTT+GGG - Chr1:73722793-73722812 None:intergenic 25.0%
! TTTGGTGAAAAACCAAAATT+AGG - Chr1:73722859-73722878 None:intergenic 25.0%
!! GGTGTTGAAATGATTATTAT+TGG - Chr1:73722734-73722753 None:intergenic 25.0%
!!! ACTGTTTTGTTTTTGCTATT+AGG + Chr1:73725701-73725720 MsG0180004124.01.T01:intron 25.0%
AAATGAAGAAGACCTACAAA+AGG + Chr1:73725322-73725341 MsG0180004124.01.T01:CDS 30.0%
AAGTAGAAAATGGTAGTAGA+GGG - Chr1:73724184-73724203 None:intergenic 30.0%
AATCCTTATGTAGTTGTGTA+AGG - Chr1:73725164-73725183 None:intergenic 30.0%
ATCAAGTTATTTATCCAGAG+GGG - Chr1:73724699-73724718 None:intergenic 30.0%
ATCAATGTTCTTACTCCAAA+GGG + Chr1:73724236-73724255 MsG0180004124.01.T01:intron 30.0%
ATCCTTATGTAGTTGTGTAA+GGG - Chr1:73725163-73725182 None:intergenic 30.0%
ATTGGAGACTAAAACTGAAA+AGG - Chr1:73726401-73726420 None:intergenic 30.0%
CAAGAACAAGAAGTAGAAAA+TGG - Chr1:73724194-73724213 None:intergenic 30.0%
CAAGGATAACTTATGAAAAC+AGG + Chr1:73724821-73724840 MsG0180004124.01.T01:intron 30.0%
GTAGAATCAAAAGGATTAGA+AGG - Chr1:73724340-73724359 None:intergenic 30.0%
TCAAAAGGATTAGAAGGAAT+TGG - Chr1:73724334-73724353 None:intergenic 30.0%
TCACAGTAAATGGTTAACAA+AGG + Chr1:73723847-73723866 MsG0180004124.01.T01:intron 30.0%
TGTGGAAGAGATTAGATTAA+TGG - Chr1:73724106-73724125 None:intergenic 30.0%
TTAAGAGAGGGAAAATAATG+TGG + Chr1:73723158-73723177 MsG0180004124.01.T01:intron 30.0%
TTACTGTATCAGAGAGTTTA+TGG - Chr1:73725107-73725126 None:intergenic 30.0%
TTGTTCATAACTATCTTTCC+TGG + Chr1:73725569-73725588 MsG0180004124.01.T01:intron 30.0%
! AACTTGATTTAGGGTTTGTT+TGG + Chr1:73724711-73724730 MsG0180004124.01.T01:intron 30.0%
! AATCACTTGCTACACTATTT+GGG + Chr1:73724771-73724790 MsG0180004124.01.T01:intron 30.0%
! ACACAACTACATAAGGATTT+TGG + Chr1:73725165-73725184 MsG0180004124.01.T01:intron 30.0%
! CATCAAAACGTACCTAATTT+TGG + Chr1:73722844-73722863 MsG0180004124.01.T01:intron 30.0%
! CGTTGGTTGAAAAATTGATT+TGG - Chr1:73722811-73722830 None:intergenic 30.0%
! TAATCACTTGCTACACTATT+TGG + Chr1:73724770-73724789 MsG0180004124.01.T01:intron 30.0%
! TGGGATTTTCGTAGTTAAAT+GGG - Chr1:73722774-73722793 None:intergenic 30.0%
! TTAGCTTAGCTTCTTTTCTT+TGG + Chr1:73724408-73724427 MsG0180004124.01.T01:intron 30.0%
! TTGGGATTTTCGTAGTTAAA+TGG - Chr1:73722775-73722794 None:intergenic 30.0%
! TTTAGGGTTTGTTTGGAATT+TGG + Chr1:73724718-73724737 MsG0180004124.01.T01:intron 30.0%
!! AACTTCACTTAGTTTGCTAA+TGG - Chr1:73722684-73722703 None:intergenic 30.0%
!! AATGAGTGTTGAATTAAGAG+AGG + Chr1:73723145-73723164 MsG0180004124.01.T01:intron 30.0%
!! ACGTTTTGATGTATGTTTTG+AGG - Chr1:73722835-73722854 None:intergenic 30.0%
!! ACTACATAAGGATTTTGGAA+TGG + Chr1:73725170-73725189 MsG0180004124.01.T01:intron 30.0%
!! ATGAGTGTTGAATTAAGAGA+GGG + Chr1:73723146-73723165 MsG0180004124.01.T01:intron 30.0%
!!! CGTCATCCATTTTAAAGTAT+CGG - Chr1:73723258-73723277 None:intergenic 30.0%
!!! GTCATCCATTTTAAAGTATC+GGG - Chr1:73723257-73723276 None:intergenic 30.0%
!!! TCATCCATTTTAAAGTATCG+GGG - Chr1:73723256-73723275 None:intergenic 30.0%
!!! TGAGTATAGTGCTTCTTTTT+TGG + Chr1:73723486-73723505 MsG0180004124.01.T01:intron 30.0%
AACCCTTACACAACTACATA+AGG + Chr1:73725158-73725177 MsG0180004124.01.T01:intron 35.0%
AACTAATCATGCACTCAACA+TGG - Chr1:73724505-73724524 None:intergenic 35.0%
ACACTTAAACAAAAAGCCCT+AGG - Chr1:73726302-73726321 None:intergenic 35.0%
ACCAGAAGATTGAACTTCAA+GGG - Chr1:73724367-73724386 None:intergenic 35.0%
ACTAATCATGCACTCAACAT+GGG - Chr1:73724504-73724523 None:intergenic 35.0%
ACTGCTTTCATAAGCTATCT+CGG + Chr1:73725028-73725047 MsG0180004124.01.T01:intron 35.0%
ACTTGTTTGAGCTTATCTAC+TGG + Chr1:73724745-73724764 MsG0180004124.01.T01:intron 35.0%
AGCTTTCACAATAAGGATGA+AGG - Chr1:73724275-73724294 None:intergenic 35.0%
ATAAGTTGTAAACGGTCTCA+CGG + Chr1:73725000-73725019 MsG0180004124.01.T01:intron 35.0%
ATACTATCCCGATAAGTATC+GGG - Chr1:73723395-73723414 None:intergenic 35.0%
ATCTTCCTTGCAACTTATCA+AGG - Chr1:73725406-73725425 None:intergenic 35.0%
ATGGGGTTAACCATTGTAAA+TGG + Chr1:73723221-73723240 MsG0180004124.01.T01:intron 35.0%
CAACTTATGGACATGTCATA+AGG + Chr1:73725076-73725095 MsG0180004124.01.T01:intron 35.0%
CATCAATGTTCTTACTCCAA+AGG + Chr1:73724235-73724254 MsG0180004124.01.T01:intron 35.0%
CTCAAATTTGTGAGCTAATG+TGG - Chr1:73725823-73725842 None:intergenic 35.0%
GAAGCTGATATTTCAATCTC+TGG + Chr1:73724301-73724320 MsG0180004124.01.T01:CDS 35.0%
GAAGTAGAAAATGGTAGTAG+AGG - Chr1:73724185-73724204 None:intergenic 35.0%
GACATGTTCATAAGCTTTCA+AGG + Chr1:73724803-73724822 MsG0180004124.01.T01:intron 35.0%
GATACTATCCCGATAAGTAT+CGG - Chr1:73723396-73723415 None:intergenic 35.0%
GATACTCTTCTGATACGTAT+CGG - Chr1:73723327-73723346 None:intergenic 35.0%
GGCTTAATATGTTTACCCTT+TGG - Chr1:73724254-73724273 None:intergenic 35.0%
GTGTTGGGAATTGAAAAAGT+GGG + Chr1:73723182-73723201 MsG0180004124.01.T01:intron 35.0%
TAACCATTTACTGTGAAACC+CGG - Chr1:73723843-73723862 None:intergenic 35.0%
TAATGTGGCAGTTACTTCAA+GGG - Chr1:73725808-73725827 None:intergenic 35.0%
TAATTGGAAATTATTGGGGC+AGG - Chr1:73723441-73723460 None:intergenic 35.0%
TCAAGTTATTTATCCAGAGG+GGG - Chr1:73724698-73724717 None:intergenic 35.0%
TGAAAGACCAAAATCCTTGT+TGG + Chr1:73723899-73723918 MsG0180004124.01.T01:intron 35.0%
TGAAGTTACATATCTTGACG+CGG + Chr1:73726129-73726148 MsG0180004124.01.T01:exon 35.0%
TTGATAAGTTGCAAGGAAGA+TGG + Chr1:73725405-73725424 MsG0180004124.01.T01:CDS 35.0%
! AACACTTATGGTGCTCTTTT+TGG + Chr1:73723554-73723573 MsG0180004124.01.T01:intron 35.0%
! ACACTTATGGTGCTCTTTTT+GGG + Chr1:73723555-73723574 MsG0180004124.01.T01:intron 35.0%
! AGCACTAACAATGTTCCTTT+TGG + Chr1:73723522-73723541 MsG0180004124.01.T01:intron 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG + Chr1:73723181-73723200 MsG0180004124.01.T01:intron 35.0%
! GGAAAATAATGTGGAGTGTT+GGG + Chr1:73723167-73723186 MsG0180004124.01.T01:intron 35.0%
! TGATACGTATCGGAAAGTAT+CGG - Chr1:73723317-73723336 None:intergenic 35.0%
!! AATATAGTGGACCTTCAGTT+GGG + Chr1:73725762-73725781 MsG0180004124.01.T01:CDS 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG + Chr1:73723191-73723210 MsG0180004124.01.T01:intron 35.0%
!! TAATATAGTGGACCTTCAGT+TGG + Chr1:73725761-73725780 MsG0180004124.01.T01:CDS 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG + Chr1:73723192-73723211 MsG0180004124.01.T01:intron 35.0%
!!! ACATAAGGATTTTGGAATGG+TGG + Chr1:73725173-73725192 MsG0180004124.01.T01:intron 35.0%
!!! TCTCTTCCACACTTTTTTCA+TGG + Chr1:73724115-73724134 MsG0180004124.01.T01:intron 35.0%
AAAACCACAGTGAAGACAAC+CGG + Chr1:73726022-73726041 MsG0180004124.01.T01:exon 40.0%
AAATCAAGATACGATACGGC+TGG - Chr1:73723761-73723780 None:intergenic 40.0%
AACATTGATGTTGTTGCTCC+TGG - Chr1:73724225-73724244 None:intergenic 40.0%
AAGGGGGAAGTAGAATCAAA+AGG - Chr1:73724349-73724368 None:intergenic 40.0%
AATCAAGATACGATACGGCT+GGG - Chr1:73723760-73723779 None:intergenic 40.0%
AATGTGGCAGTTACTTCAAG+GGG - Chr1:73725807-73725826 None:intergenic 40.0%
ACAAACCACTCACAGTAAAG+AGG - Chr1:73725963-73725982 None:intergenic 40.0%
ACATTGATGTTGTTGCTCCT+GGG - Chr1:73724224-73724243 None:intergenic 40.0%
ACTTATCAAGGTTGTCTGTG+AGG - Chr1:73725394-73725413 None:intergenic 40.0%
ATAAGCCCGTTTATCTGAAC+AGG + Chr1:73724933-73724952 MsG0180004124.01.T01:intron 40.0%
CAGAAGATTGAACTTCAAGG+GGG - Chr1:73724365-73724384 None:intergenic 40.0%
CCACAATCTAATAGAGGAAG+TGG + Chr1:73726100-73726119 MsG0180004124.01.T01:exon 40.0%
CCACTTCCTCTATTAGATTG+TGG - Chr1:73726103-73726122 None:intergenic 40.0%
CCAGAAGATTGAACTTCAAG+GGG - Chr1:73724366-73724385 None:intergenic 40.0%
CGATACTTCCCGATACTTAT+CGG + Chr1:73723384-73723403 MsG0180004124.01.T01:intron 40.0%
CTAATGTGGCAGTTACTTCA+AGG - Chr1:73725809-73725828 None:intergenic 40.0%
CTCAAATTCCAGATGCATTG+AGG + Chr1:73726077-73726096 MsG0180004124.01.T01:exon 40.0%
GAAATTATTGGGGCAGGTAT+AGG - Chr1:73723435-73723454 None:intergenic 40.0%
GACAACCTTGATAAGTTGCA+AGG + Chr1:73725398-73725417 MsG0180004124.01.T01:CDS 40.0%
GACCAGAAGATTGAACTTCA+AGG - Chr1:73724368-73724387 None:intergenic 40.0%
GATACTTCCCGATACTTATC+GGG + Chr1:73723385-73723404 MsG0180004124.01.T01:intron 40.0%
GCTTCACAGACCATTTACAA+TGG - Chr1:73723234-73723253 None:intergenic 40.0%
GGGAAAATAATGTGGAGTGT+TGG + Chr1:73723166-73723185 MsG0180004124.01.T01:intron 40.0%
TAAGCCCGTTTATCTGAACA+GGG + Chr1:73724934-73724953 MsG0180004124.01.T01:intron 40.0%
TATCCGGGTTTCACAGTAAA+TGG + Chr1:73723837-73723856 MsG0180004124.01.T01:intron 40.0%
TGCTTTCTACTGCATATACG+TGG + Chr1:73725860-73725879 MsG0180004124.01.T01:intron 40.0%
TTGAGGCCACAATCTAATAG+AGG + Chr1:73726094-73726113 MsG0180004124.01.T01:exon 40.0%
TTGTTGGAGATAGCAAAACG+TGG + Chr1:73723915-73723934 MsG0180004124.01.T01:intron 40.0%
! ATTTGAGGCAAATCTAGAGG+CGG - Chr1:73726064-73726083 None:intergenic 40.0%
! CTCAATGCATCTGGAATTTG+AGG - Chr1:73726079-73726098 None:intergenic 40.0%
! CTTGTTCTTGTTTCTTTCCC+AGG + Chr1:73724204-73724223 MsG0180004124.01.T01:intron 40.0%
! GAAGCCCCGATACTTTAAAA+TGG + Chr1:73723249-73723268 MsG0180004124.01.T01:intron 40.0%
! GCTATCTCCAACAAGGATTT+TGG - Chr1:73723909-73723928 None:intergenic 40.0%
! GGAATTTGAGGCAAATCTAG+AGG - Chr1:73726067-73726086 None:intergenic 40.0%
! TAGTTGTGTAAGGGTTTGCT+TGG - Chr1:73725154-73725173 None:intergenic 40.0%
! TGAGTGGTTTGTGATGATTC+AGG + Chr1:73725971-73725990 MsG0180004124.01.T01:intron 40.0%
!! ACGTTTTGCTATCTCCAACA+AGG - Chr1:73723916-73723935 None:intergenic 40.0%
!! GATACGTATCGGAAAGTATC+GGG - Chr1:73723316-73723335 None:intergenic 40.0%
!!! GATGTATGTTTTGAGGACGT+TGG - Chr1:73722828-73722847 None:intergenic 40.0%
AAACCACAGTGAAGACAACC+GGG + Chr1:73726023-73726042 MsG0180004124.01.T01:exon 45.0%
AAATGTATTTAGGCCCCCTC+TGG + Chr1:73724682-73724701 MsG0180004124.01.T01:intron 45.0%
AACCACTCACAGTAAAGAGG+CGG - Chr1:73725960-73725979 None:intergenic 45.0%
AAGGAACTTGAAGAAGCTGG+AGG + Chr1:73725359-73725378 MsG0180004124.01.T01:CDS 45.0%
AGGAGATAGAGGTGAGCTAA+GGG + Chr1:73726168-73726187 MsG0180004124.01.T01:exon 45.0%
AGGCTCCTTCCTATAACTCT+TGG + Chr1:73725497-73725516 MsG0180004124.01.T01:CDS 45.0%
CAGACCTGTCCAAGAGTTAT+AGG - Chr1:73725509-73725528 None:intergenic 45.0%
CAGCAGCAGCTTTCACAATA+AGG - Chr1:73724282-73724301 None:intergenic 45.0%
CCCCTTGAAGTTCAATCTTC+TGG + Chr1:73724363-73724382 MsG0180004124.01.T01:CDS 45.0%
CCTGTCCAAGAGTTATAGGA+AGG - Chr1:73725505-73725524 None:intergenic 45.0%
CCTTCCTATAACTCTTGGAC+AGG + Chr1:73725502-73725521 MsG0180004124.01.T01:CDS 45.0%
CTTGCCCTGTTCAGATAAAC+GGG - Chr1:73724941-73724960 None:intergenic 45.0%
GATATACCCAACCCACACTA+TGG + Chr1:73726272-73726291 MsG0180004124.01.T01:exon 45.0%
GCTAAGGAACTTGAAGAAGC+TGG + Chr1:73725356-73725375 MsG0180004124.01.T01:CDS 45.0%
GCTCACAAATTTGAGCTCGT+AGG + Chr1:73725828-73725847 MsG0180004124.01.T01:CDS 45.0%
GCTTGCCCTGTTCAGATAAA+CGG - Chr1:73724942-73724961 None:intergenic 45.0%
GGAGATCAAAGCACACACAT+AGG - Chr1:73725654-73725673 None:intergenic 45.0%
GGGAAGCCATGAAAAAAGTG+TGG - Chr1:73724124-73724143 None:intergenic 45.0%
TCCGTATCGTATCTCGTATC+CGG + Chr1:73723821-73723840 MsG0180004124.01.T01:CDS 45.0%
!! GGTGTTGAAGGGTGTTGAAT+GGG + Chr1:73723203-73723222 MsG0180004124.01.T01:intron 45.0%
!! GTGTTGAAGGGTGTTGAATG+GGG + Chr1:73723204-73723223 MsG0180004124.01.T01:intron 45.0%
!! AAAAAATAAAATTTAATCTT+CGG - Chr1:73723349-73723368 None:intergenic 5.0%
AGGGGTGAAGAAGGAGATTG+AGG - Chr1:73724145-73724164 None:intergenic 50.0%
AGGGTGAGAGAGAGAAGTTG+AGG - Chr1:73724165-73724184 None:intergenic 50.0%
ATAGGAAGGAGCCTTCCTGT+GGG - Chr1:73725491-73725510 None:intergenic 50.0%
CCCGGATACGAGATACGATA+CGG - Chr1:73723825-73723844 None:intergenic 50.0%
CCGTATCGTATCTCGTATCC+GGG + Chr1:73723822-73723841 MsG0180004124.01.T01:CDS 50.0%
CCTACAAAAGGCAGATGCTG+CGG + Chr1:73725334-73725353 MsG0180004124.01.T01:CDS 50.0%
CGGCAACTGTGAAAATGTCC+CGG - Chr1:73726044-73726063 None:intergenic 50.0%
GAGAAGTTGAGGGGTGAAGA+AGG - Chr1:73724154-73724173 None:intergenic 50.0%
GAGGAGATAGAGGTGAGCTA+AGG + Chr1:73726167-73726186 MsG0180004124.01.T01:exon 50.0%
GATTGTGGCCTCAATGCATC+TGG - Chr1:73726088-73726107 None:intergenic 50.0%
GCTGTTGCTGGGCTAAATAG+AGG + Chr1:73725290-73725309 MsG0180004124.01.T01:CDS 50.0%
GGGGTGAAGAAGGAGATTGA+GGG - Chr1:73724144-73724163 None:intergenic 50.0%
GGGTGAGAGAGAGAAGTTGA+GGG - Chr1:73724164-73724183 None:intergenic 50.0%
GGTGAGAGAGAGAAGTTGAG+GGG - Chr1:73724163-73724182 None:intergenic 50.0%
GTTGCTCAGTTGCAACTTCC+AGG - Chr1:73725590-73725609 None:intergenic 50.0%
TAGCTCACCTCTATCTCCTC+TGG - Chr1:73726167-73726186 None:intergenic 50.0%
TATAGGAAGGAGCCTTCCTG+TGG - Chr1:73725492-73725511 None:intergenic 50.0%
TCTCCTCTCGTACTCTAGGT+GGG + Chr1:73725450-73725469 MsG0180004124.01.T01:CDS 50.0%
TTCTCCTCTCGTACTCTAGG+TGG + Chr1:73725449-73725468 MsG0180004124.01.T01:CDS 50.0%
!! GGAAAGTATCGGGCAGGTAT+CGG - Chr1:73723306-73723325 None:intergenic 50.0%
!! GGGTGTTGAAGGGTGTTGAA+TGG + Chr1:73723202-73723221 MsG0180004124.01.T01:intron 50.0%
AAAGGCAGATGCTGCGGCTA+AGG + Chr1:73725340-73725359 MsG0180004124.01.T01:CDS 55.0%
ACCCACACTATGGAGCTCCT+AGG + Chr1:73726282-73726301 MsG0180004124.01.T01:exon 55.0%
ACCTTCAGTTGGGTGCTCCA+TGG + Chr1:73725772-73725791 MsG0180004124.01.T01:CDS 55.0%
AGGAGCTCCATAGTGTGGGT+TGG - Chr1:73726282-73726301 None:intergenic 55.0%
AGGCATGCATGTCGACAGAG+AGG + Chr1:73723867-73723886 MsG0180004124.01.T01:intron 55.0%
CCCACACTATGGAGCTCCTA+GGG + Chr1:73726283-73726302 MsG0180004124.01.T01:exon 55.0%
CCCTAGGAGCTCCATAGTGT+GGG - Chr1:73726286-73726305 None:intergenic 55.0%
GACCGCCTCTTTACTGTGAG+TGG + Chr1:73725955-73725974 MsG0180004124.01.T01:intron 55.0%
GCGTTCTCCTCTCGTACTCT+AGG + Chr1:73725446-73725465 MsG0180004124.01.T01:CDS 55.0%
GGAGCTCCATAGTGTGGGTT+GGG - Chr1:73726281-73726300 None:intergenic 55.0%
GTGGCAGTTACTTCAAGGGG+CGG - Chr1:73725804-73725823 None:intergenic 55.0%
GTTACTTCAAGGGGCGGTAG+AGG - Chr1:73725798-73725817 None:intergenic 55.0%
TGTCCCGGTTGTCTTCACTG+TGG - Chr1:73726029-73726048 None:intergenic 55.0%
! CCGCAGCATCTGCCTTTTGT+AGG - Chr1:73725337-73725356 None:intergenic 55.0%
! CTCTATCTCCTCTGGTGACG+CGG - Chr1:73726159-73726178 None:intergenic 55.0%
! GTATCGGTGCAGGATACGCA+GGG - Chr1:73723290-73723309 None:intergenic 55.0%
! TCTATCTCCTCTGGTGACGC+GGG - Chr1:73726158-73726177 None:intergenic 55.0%
!! ATGCTGCAGAGTGCTGTTGC+TGG + Chr1:73725278-73725297 MsG0180004124.01.T01:intron 55.0%
!! CGTATCGGAAAGTATCGGGC+AGG - Chr1:73723312-73723331 None:intergenic 55.0%
!! TGCTGCAGAGTGCTGTTGCT+GGG + Chr1:73725279-73725298 MsG0180004124.01.T01:intron 55.0%
CGCGTCACCAGAGGAGATAG+AGG + Chr1:73726157-73726176 MsG0180004124.01.T01:exon 60.0%
GCCCTAGGAGCTCCATAGTG+TGG - Chr1:73726287-73726306 None:intergenic 60.0%
GCTCCCACCTAGAGTACGAG+AGG - Chr1:73725456-73725475 None:intergenic 60.0%
TTCCTGTGGGAGGTCCAGGA+CGG - Chr1:73725478-73725497 None:intergenic 60.0%
! GCCATGGAGCACCCAACTGA+AGG - Chr1:73725776-73725795 None:intergenic 60.0%
!! GGTATCGGTGCAGGATACGC+AGG - Chr1:73723291-73723310 None:intergenic 60.0%
!! TATCGGGCAGGTATCGGTGC+AGG - Chr1:73723300-73723319 None:intergenic 60.0%
ACTCTAGGTGGGAGCCGTCC+TGG + Chr1:73725461-73725480 MsG0180004124.01.T01:CDS 65.0%
AGCCTTCCTGTGGGAGGTCC+AGG - Chr1:73725482-73725501 None:intergenic 65.0%
GGAAGGAGCCTTCCTGTGGG+AGG - Chr1:73725488-73725507 None:intergenic 65.0%
GTCCTGGACCTCCCACAGGA+AGG + Chr1:73725477-73725496 MsG0180004124.01.T01:CDS 65.0%
TCAAGGGGCGGTAGAGGCCA+TGG - Chr1:73725792-73725811 None:intergenic 65.0%
AGCCGTCCTGGACCTCCCAC+AGG + Chr1:73725473-73725492 MsG0180004124.01.T01:CDS 70.0%
GCGGATACCCGCGTCACCAG+AGG + Chr1:73726148-73726167 MsG0180004124.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 73722632 73726449 73722632 ID=MsG0180004124.01;
Chr1 mRNA 73722632 73726449 73722632 ID=MsG0180004124.01.T01;Parent=MsG0180004124.01
Chr1 exon 73722632 73722852 73722632 ID=MsG0180004124.01.T01.exon;Parent=MsG0180004124.01.T01
Chr1 exon 73723253 73723341 73723253 ID=MsG0180004124.01.T01.exon;Parent=MsG0180004124.01.T01
Chr1 CDS 73723268 73723341 73723268 ID=MsG0180004124.01.T01.cds;Parent=MsG0180004124.01.T01
Chr1 CDS 73723814 73723851 73723814 ID=MsG0180004124.01.T01.cds;Parent=MsG0180004124.01.T01
Chr1 exon 73723814 73723851 73723814 ID=MsG0180004124.01.T01.exon;Parent=MsG0180004124.01.T01
Chr1 CDS 73724272 73724384 73724272 ID=MsG0180004124.01.T01.cds;Parent=MsG0180004124.01.T01
Chr1 exon 73724272 73724384 73724272 ID=MsG0180004124.01.T01.exon;Parent=MsG0180004124.01.T01
Chr1 CDS 73725287 73725523 73725287 ID=MsG0180004124.01.T01.cds;Parent=MsG0180004124.01.T01
Chr1 exon 73725287 73725523 73725287 ID=MsG0180004124.01.T01.exon;Parent=MsG0180004124.01.T01
Chr1 CDS 73725723 73725849 73725723 ID=MsG0180004124.01.T01.cds;Parent=MsG0180004124.01.T01
Chr1 exon 73725723 73725849 73725723 ID=MsG0180004124.01.T01.exon;Parent=MsG0180004124.01.T01
Chr1 CDS 73725993 73726207 73725993 ID=MsG0180004124.01.T01.cds;Parent=MsG0180004124.01.T01
Chr1 exon 73725993 73726449 73725993 ID=MsG0180004124.01.T01.exon;Parent=MsG0180004124.01.T01
Gene Sequence

>MsG0180004124.01.T01

ATGGATGACGTATCGTATGCCCTGCGTATCCTGCACCGATACCTGCCCGATACTTTCCGATACGTATCAGAAGATATCGTATCCGTATCGTATCTCGTATCCGGGTTTCACACCTTCATCCTTATTGTGAAAGCTGCTGCTGAAGCTGATATTTCAATCTCTGGCTCTATTCCAATTCCTTCTAATCCTTTTGATTCTACTTCCCCCTTGAAGTTCAATCTTCTGAGTGCTGTTGCTGGGCTAAATAGAGGTCTTGCTGCAAATGAAGAAGACCTACAAAAGGCAGATGCTGCGGCTAAGGAACTTGAAGAAGCTGGAGGATTAGTAGACCTCACAGACAACCTTGATAAGTTGCAAGGAAGATGGAAACTGATATATAGCAGCGCGTTCTCCTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACAGGAAGGCTCCTTCCTATAACTCTTGGACAGGTTTTTCAACGAATTGACATCTTAAGCAAAGATTTTGATAATATAGTGGACCTTCAGTTGGGTGCTCCATGGCCTCTACCGCCCCTTGAAGTAACTGCCACATTAGCTCACAAATTTGAGCTCGTAGGATCTTCGAAGATCAAGATAATATTTGAGAAAACCACAGTGAAGACAACCGGGACATTTTCACAGTTGCCGCCTCTAGATTTGCCTCAAATTCCAGATGCATTGAGGCCACAATCTAATAGAGGAAGTGGTGATTTTGAAGTTACATATCTTGACGCGGATACCCGCGTCACCAGAGGAGATAGAGGTGAGCTAAGGGTCTTTGTGATTGCATAA

Protein sequence

>MsG0180004124.01.T01

MDDVSYALRILHRYLPDTFRYVSEDIVSVSYLVSGFHTFILIVKAAAEADISISGSIPIPSNPFDSTSPLKFNLLSAVAGLNRGLAANEEDLQKADAAAKELEEAGGLVDLTDNLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIVDLQLGAPWPLPPLEVTATLAHKFELVGSSKIKIIFEKTTVKTTGTFSQLPPLDLPQIPDALRPQSNRGSGDFEVTYLDADTRVTRGDRGELRVFVIA*